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VariantSeq: tutorial for usage with case study.

  1. Página Principal
  2. Nuestros cursos
  3. VariantSeq Tutorial
  4. Pipeline mode: SNP/Indels results
  5. 06_picardMarkDuplicates
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating VariantSeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
  • 3. PIPELINE MODE TUTORIAL
  • 4. BIBLIOGRAPHY
  • CITE US

06_picardMarkDuplicates

 
 CAN2_R.baiCAN2_R.bai
 CAN2_R.bamCAN2_R.bam
 CAN2_R.metrics.txtCAN2_R.metrics.txt
 CAN3_R.baiCAN3_R.bai
 CAN3_R.bamCAN3_R.bam
 CAN3_R.metrics.txtCAN3_R.metrics.txt
 CAN4_R.baiCAN4_R.bai
 CAN4_R.bamCAN4_R.bam
 CAN4_R.metrics.txtCAN4_R.metrics.txt
 CAN5_R.baiCAN5_R.bai
 CAN5_R.bamCAN5_R.bam
 CAN5_R.metrics.txtCAN5_R.metrics.txt
 CAN12_R.baiCAN12_R.bai
 CAN12_R.bamCAN12_R.bam
 CAN12_R.metrics.txtCAN12_R.metrics.txt
Actividad previa ◄ 05_picardAddReplaceReadGroups
Siguiente actividad 07_BQSR ►
  • Página Principal
  • Calendario
  • Secciones del curso
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating Variantseq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
    • 3. PIPELINE MODE TUTORIAL
    • 4. BIBLIOGRAPHY
    • Pipeline mode: SNP/Indels results
    • CITE US
    • 4. BIBLIOGRAPHY
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Biotechvana

Valencia Lab
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Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
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Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
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Email: biotechvana@biotechvana.com

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