## htsjdk.samtools.metrics.StringHeader
# picard.sam.markduplicates.MarkDuplicates INPUT=[/home/rceprian/tutorial_VariantSeq/05_addreplacegroups/picardAddReplaceReadGroups/CAN2_R.bam] OUTPUT=/home/rceprian/tutorial_VariantSeq/06_MarkDuplicates/picardMarkDuplicates/CAN2_R.bam METRICS_FILE=/home/rceprian/tutorial_VariantSeq/06_MarkDuplicates/picardMarkDuplicates/CAN2_R.metrics.txt VALIDATION_STRINGENCY=LENIENT CREATE_INDEX=true    MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 TAG_DUPLICATE_SET_MEMBERS=false REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX=<optimized capture of last three ':' separated fields as numeric values> OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Feb 21 10:31:38 CET 2022

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
CAN2_R	71351	57250562	1754976	88953	58389	46035265	124387	0.80411	11286824

## HISTOGRAM	java.lang.Double
BIN	VALUE
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2.0	1.006338
3.0	1.006377
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6.0	1.006378
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97.0	1.006378
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100.0	1.006378