## htsjdk.samtools.metrics.StringHeader
# picard.sam.markduplicates.MarkDuplicates INPUT=[/home/rceprian/tutorial_VariantSeq/05_addreplacegroups/picardAddReplaceReadGroups/CAN4_R.bam] OUTPUT=/home/rceprian/tutorial_VariantSeq/06_MarkDuplicates/picardMarkDuplicates/CAN4_R.bam METRICS_FILE=/home/rceprian/tutorial_VariantSeq/06_MarkDuplicates/picardMarkDuplicates/CAN4_R.metrics.txt VALIDATION_STRINGENCY=LENIENT CREATE_INDEX=true    MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 TAG_DUPLICATE_SET_MEMBERS=false REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX=<optimized capture of last three ':' separated fields as numeric values> OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Feb 21 10:31:38 CET 2022

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
CAN4_R	22112	14875401	1129730	25618	14863	8235771	23500	0.553738	7802650

## HISTOGRAM	java.lang.Double
BIN	VALUE
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2.0	1.149211
3.0	1.171307
4.0	1.17459
5.0	1.175078
6.0	1.175151
7.0	1.175161
8.0	1.175163
9.0	1.175163
10.0	1.175163
11.0	1.175163
12.0	1.175163
13.0	1.175163
14.0	1.175163
15.0	1.175163
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17.0	1.175163
18.0	1.175163
19.0	1.175163
20.0	1.175163
21.0	1.175163
22.0	1.175163
23.0	1.175163
24.0	1.175163
25.0	1.175163
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27.0	1.175163
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29.0	1.175163
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31.0	1.175163
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35.0	1.175163
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37.0	1.175163
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39.0	1.175163
40.0	1.175163
41.0	1.175163
42.0	1.175163
43.0	1.175163
44.0	1.175163
45.0	1.175163
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47.0	1.175163
48.0	1.175163
49.0	1.175163
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56.0	1.175163
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60.0	1.175163
61.0	1.175163
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64.0	1.175163
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68.0	1.175163
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90.0	1.175163
91.0	1.175163
92.0	1.175163
93.0	1.175163
94.0	1.175163
95.0	1.175163
96.0	1.175163
97.0	1.175163
98.0	1.175163
99.0	1.175163
100.0	1.175163