## htsjdk.samtools.metrics.StringHeader
# picard.sam.markduplicates.MarkDuplicates INPUT=[/home/rceprian/tutorial_VariantSeq/05_addreplacegroups/picardAddReplaceReadGroups/CAN12_R.bam] OUTPUT=/home/rceprian/tutorial_VariantSeq/06_MarkDuplicates/picardMarkDuplicates/CAN12_R.bam METRICS_FILE=/home/rceprian/tutorial_VariantSeq/06_MarkDuplicates/picardMarkDuplicates/CAN12_R.metrics.txt VALIDATION_STRINGENCY=LENIENT CREATE_INDEX=true    MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 TAG_DUPLICATE_SET_MEMBERS=false REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX=<optimized capture of last three ':' separated fields as numeric values> OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Feb 21 10:43:38 CET 2022

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
CAN12_R	34821	24753685	1631937	40435	20420	8091815	46263	0.327076	29154816

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.001189
2.0	1.429522
3.0	1.612773
4.0	1.691172
5.0	1.724713
6.0	1.739063
7.0	1.745202
8.0	1.747829
9.0	1.748952
10.0	1.749433
11.0	1.749639
12.0	1.749727
13.0	1.749764
14.0	1.749781
15.0	1.749787
16.0	1.74979
17.0	1.749792
18.0	1.749792
19.0	1.749792
20.0	1.749792
21.0	1.749793
22.0	1.749793
23.0	1.749793
24.0	1.749793
25.0	1.749793
26.0	1.749793
27.0	1.749793
28.0	1.749793
29.0	1.749793
30.0	1.749793
31.0	1.749793
32.0	1.749793
33.0	1.749793
34.0	1.749793
35.0	1.749793
36.0	1.749793
37.0	1.749793
38.0	1.749793
39.0	1.749793
40.0	1.749793
41.0	1.749793
42.0	1.749793
43.0	1.749793
44.0	1.749793
45.0	1.749793
46.0	1.749793
47.0	1.749793
48.0	1.749793
49.0	1.749793
50.0	1.749793
51.0	1.749793
52.0	1.749793
53.0	1.749793
54.0	1.749793
55.0	1.749793
56.0	1.749793
57.0	1.749793
58.0	1.749793
59.0	1.749793
60.0	1.749793
61.0	1.749793
62.0	1.749793
63.0	1.749793
64.0	1.749793
65.0	1.749793
66.0	1.749793
67.0	1.749793
68.0	1.749793
69.0	1.749793
70.0	1.749793
71.0	1.749793
72.0	1.749793
73.0	1.749793
74.0	1.749793
75.0	1.749793
76.0	1.749793
77.0	1.749793
78.0	1.749793
79.0	1.749793
80.0	1.749793
81.0	1.749793
82.0	1.749793
83.0	1.749793
84.0	1.749793
85.0	1.749793
86.0	1.749793
87.0	1.749793
88.0	1.749793
89.0	1.749793
90.0	1.749793
91.0	1.749793
92.0	1.749793
93.0	1.749793
94.0	1.749793
95.0	1.749793
96.0	1.749793
97.0	1.749793
98.0	1.749793
99.0	1.749793
100.0	1.749793