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VariantSeq: tutorial for usage with case study.

  1. Home
  2. Courses
  3. VariantSeq Tutorial
  4. Pipeline mode: SNP/Indels results
  5. 06_picardMarkDuplicates
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating VariantSeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
  • 3. PIPELINE MODE TUTORIAL
  • 4. BIBLIOGRAPHY
  • CITE US

06_picardMarkDuplicates

    • CAN2_R.baiCAN2_R.bai
    • CAN2_R.bamCAN2_R.bam
    • CAN2_R.metrics.txtCAN2_R.metrics.txt
    • CAN3_R.baiCAN3_R.bai
    • CAN3_R.bamCAN3_R.bam
    • CAN3_R.metrics.txtCAN3_R.metrics.txt
    • CAN4_R.baiCAN4_R.bai
    • CAN4_R.bamCAN4_R.bam
    • CAN4_R.metrics.txtCAN4_R.metrics.txt
    • CAN5_R.baiCAN5_R.bai
    • CAN5_R.bamCAN5_R.bam
    • CAN5_R.metrics.txtCAN5_R.metrics.txt
    • CAN12_R.baiCAN12_R.bai
    • CAN12_R.bamCAN12_R.bam
    • CAN12_R.metrics.txtCAN12_R.metrics.txt
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  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating Variantseq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
    • 3. PIPELINE MODE TUTORIAL
    • 4. BIBLIOGRAPHY
    • Pipeline mode: SNP/Indels results
    • CITE US
    • 4. BIBLIOGRAPHY
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Valencia Lab
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Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
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