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VariantSeq: tutorial for usage with case study.

  1. Home
  2. Courses
  3. VariantSeq Tutorial
  4. Quality Analysis
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating VariantSeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
  • 3. PIPELINE MODE TUTORIAL
  • 4. BIBLIOGRAPHY
  • CITE US

Quality Analysis

    • CAN2_R1_all_fastqc.htmlCAN2_R1_all_fastqc.html
    • CAN2_R2_all_fastqc.htmlCAN2_R2_all_fastqc.html
    • CAN3_R1_all_fastqc.htmlCAN3_R1_all_fastqc.html
    • CAN3_R2_all_fastqc.htmlCAN3_R2_all_fastqc.html
    • CAN4_R1_all_fastqc.htmlCAN4_R1_all_fastqc.html
    • CAN4_R2_all_fastqc.htmlCAN4_R2_all_fastqc.html
    • CAN5_R1_all_fastqc.htmlCAN5_R1_all_fastqc.html
    • CAN5_R2_all_fastqc.htmlCAN5_R2_all_fastqc.html
    • CAN12_R1_all_fastqc.htmlCAN12_R1_all_fastqc.html
    • CAN12_R2_all_fastqc.htmlCAN12_R2_all_fastqc.html
  • Quality Analysis
  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating Variantseq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
    • 3. PIPELINE MODE TUTORIAL
    • 4. BIBLIOGRAPHY
    • Pipeline mode: SNP/Indels results
    • CITE US
    • 4. BIBLIOGRAPHY
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Biotechvana

Valencia Lab
Parc Cientific Universitat de Valencia
Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
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Phone: +34 960 06 74 93
Email: biotechvana@biotechvana.com

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