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VariantSeq: tutorial for usage with case study.

  1. Home
  2. Courses
  3. VariantSeq Tutorial
  4. Pipeline mode: SNP/Indels results
  5. 03_FASTQC
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating VariantSeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
  • 3. PIPELINE MODE TUTORIAL
  • 4. BIBLIOGRAPHY
  • CITE US

03_FASTQC

    • CAN2_R1_allCAN2_R1_all
    • CAN2_R2_allCAN2_R2_all
    • CAN3_R1_allCAN3_R1_all
    • CAN3_R2_allCAN3_R2_all
    • CAN4_R1_allCAN4_R1_all
    • CAN4_R2_allCAN4_R2_all
    • CAN5_R1_allCAN5_R1_all
    • CAN5_R2_allCAN5_R2_all
    • CAN12_R1_allCAN12_R1_all
    • CAN12_R2_allCAN12_R2_all
Previous activity ◄ 02_PRINSEQ
Next activity 04_Bwa ►
  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating Variantseq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
    • 3. PIPELINE MODE TUTORIAL
    • 4. BIBLIOGRAPHY
    • Pipeline mode: SNP/Indels results
    • CITE US
    • 4. BIBLIOGRAPHY
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Biotechvana

Valencia Lab
Parc Cientific Universitat de Valencia
Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
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Email: biotechvana@biotechvana.com

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