Font size
  • A-
  • A
  • A+
Site color
  • R
  • A
  • A
  • A
eCampus
  • MAIN
    • eCAMPUS
    CLASS
  • FORUM
  • English ‎(en)‎ Español - Internacional ‎(es)‎
  • Acceder
Skip to main content

VariantSeq: tutorial for usage with case study.

  1. Home
  2. Courses
  3. VariantSeq Tutorial
  4. Variant filtering
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating VariantSeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
  • 3. PIPELINE MODE TUTORIAL
  • 4. BIBLIOGRAPHY
  • CITE US

Variant filtering

    • calculateContaminationcalculateContamination
      • CAN2_R.contamination.tableCAN2_R.contamination.table
      • CAN3_R.contamination.tableCAN3_R.contamination.table
      • CAN4_R.contamination.tableCAN4_R.contamination.table
      • CAN5_R.contamination.tableCAN5_R.contamination.table
      • CAN12_R.contamination.tableCAN12_R.contamination.table
    • filterMutectCallsfilterMutectCalls
      • CAN2_R.vcfCAN2_R.vcf
      • CAN2_R.vcf.filteringStats.tsvCAN2_R.vcf.filteringStats.tsv
      • CAN2_R.vcf.idxCAN2_R.vcf.idx
      • CAN3_R.vcfCAN3_R.vcf
      • CAN3_R.vcf.filteringStats.tsvCAN3_R.vcf.filteringStats.tsv
      • CAN3_R.vcf.idxCAN3_R.vcf.idx
      • CAN4_R.vcfCAN4_R.vcf
      • CAN4_R.vcf.filteringStats.tsvCAN4_R.vcf.filteringStats.tsv
      • CAN4_R.vcf.idxCAN4_R.vcf.idx
      • CAN5_R.vcfCAN5_R.vcf
      • CAN5_R.vcf.filteringStats.tsvCAN5_R.vcf.filteringStats.tsv
      • CAN5_R.vcf.idxCAN5_R.vcf.idx
      • CAN12_R.vcfCAN12_R.vcf
      • CAN12_R.vcf.filteringStats.tsvCAN12_R.vcf.filteringStats.tsv
      • CAN12_R.vcf.idxCAN12_R.vcf.idx
  • Variant filtering
  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating Variantseq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1 - Preparing your experiment
    • 2.2 - Quality analysis and preprocessing
    • 2.3 - Mapping
    • 2.4 - Postprocessing
    • 2.5 - Variant calling
    • 2.6 - Variant filtering
    • 2.7 - Annotation
    • 3. PIPELINE MODE TUTORIAL
    • 4. BIBLIOGRAPHY
    • Pipeline mode: SNP/Indels results
    • CITE US
    • 4. BIBLIOGRAPHY
Accessibility settings
About us
Team
Publications
R&D
Patents & trademarks
Announcements
Careers
Journal Sequencing Partners

Biotechvana

Valencia Lab
Parc Cientific Universitat de Valencia
Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
Contact us
Phone: +34 960 06 74 93
Email: biotechvana@biotechvana.com

Esta plataforma forma parte de: IVACE PROJECT IMDIGB/2020/56

Projectes de Digitalizació de PIME (DIGITALIZA-CV TELETREBALL)2020
IVACE PROJECT IMDIGB/2020/56
Biotechvana © 2021
eCampus Privacy policy    eCampus Terms of use