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VariantSeq: tutorial for usage with case study.
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VariantSeq Tutorial
Preprocessing
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating VariantSeq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1 - Preparing your experiment
2.2 - Quality analysis and preprocessing
2.3 - Mapping
2.4 - Postprocessing
2.5 - Variant calling
2.6 - Variant filtering
2.7 - Annotation
3. PIPELINE MODE TUTORIAL
4. BIBLIOGRAPHY
CITE US
Preprocessing
01_PRINSEQ
02_FASTQC_PRINSEQ
Preprocessing
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Course sections
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating Variantseq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1 - Preparing your experiment
2.2 - Quality analysis and preprocessing
2.3 - Mapping
2.4 - Postprocessing
2.5 - Variant calling
2.6 - Variant filtering
2.7 - Annotation
3. PIPELINE MODE TUTORIAL
4. BIBLIOGRAPHY
Pipeline mode: SNP/Indels results
CITE US
4. BIBLIOGRAPHY
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Biotechvana
Valencia Lab
Parc Cientific Universitat de Valencia
Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
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Phone: +34 960 06 74 93
Email:
biotechvana@biotechvana.com
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