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VariantSeq: tutorial for usage with case study.
Página Principal
Nuestros cursos
VariantSeq Tutorial
05_TOPHAT
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating VariantSeq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1 - Preparing your experiment
2.2 - Quality analysis and preprocessing
2.3 - Mapping
2.4 - Postprocessing
2.5 - Variant calling
2.6 - Variant filtering
2.7 - Annotation
3. PIPELINE MODE TUTORIAL
4. BIBLIOGRAPHY
CITE US
05_TOPHAT
Actividad previa
◄ 04_FASTQC
Ir a...
Ir a...
01_FASTQC
02_PRINSEQ
03_FASTQC
04_Bwa
05_picardAddReplaceReadGroups
06_picardMarkDuplicates
07_BQSR
08_mutect2
01_FASTQC
02_CUTADAPT
03_PRINSEQ
04_FASTQC
06_CUFFLINKS
06_CUFFDIFF
01_FASTQC
02_CUTADAPT
03_PRINSEQ
04_FASTQC
05_TOPHAT
06_CUFFLINKS
06_CUFFDIFF
01_FASTQC
02_CUTADAPT
03_PRINSEQ
04_FASTQC
05_Bowtie2
06_CORSET
07_edgeR
01_FASTQC
02_CUTADAPT
03_PRINSEQ
04_FASTQC
05_Bowtie2
06_CORSET
07_edgeR
Siguiente actividad
06_CUFFLINKS ►
05_TOPHAT
Página Principal
Calendario
Secciones del curso
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating Variantseq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1 - Preparing your experiment
2.2 - Quality analysis and preprocessing
2.3 - Mapping
2.4 - Postprocessing
2.5 - Variant calling
2.6 - Variant filtering
2.7 - Annotation
3. PIPELINE MODE TUTORIAL
4. BIBLIOGRAPHY
Pipeline mode: SNP/Indels results
CITE US
4. BIBLIOGRAPHY
About us
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Sequencing Partners
Biotechvana
Valencia Lab
Parc Cientific Universitat de Valencia
Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
Contact us
Phone: +34 960 06 74 93
Email:
biotechvana@biotechvana.com
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