Differential Expression
Cuffdiff
BI_vs_BC
CDS
genes
BC_vs_BI_MAplot_count.pdf
BC_vs_BI_MAplot.pdf
BC_vs_BI_Scatter.pdf
BC_vs_BI_Volcano.pdf
BI_vs_BC_Boxplot.png
BI_vs_BC_dendro_replicates.pdf
BI_vs_BC_dendro.png
BI_vs_BC_density.pdf
BI_vs_BC_diffgenes.txt
BI_vs_BC_dispersionPlot.pdf
BI_vs_BC_genes_annotated.csv
BI_vs_BC_genes.txt
BI_vs_BC_MDSplot.pdf
BI_vs_BC_ScatterMatrix.pdf
isoforms
TSS
bias_params.info
cds_exp.diff
cds.count_tracking
cds.diff
cds.fpkm_tracking
cds.read_group_tracking
cuff.db
gene_exp.diff
genes.count_tracking
genes.fpkm_tracking
genes.read_group_tracking
isoform_exp.diff
isoforms.count_tracking
isoforms.fpkm_tracking
isoforms.read_group_tracking
promoters.diff
read_groups.info
run.info
splicing.diff
tss_group_exp.diff
tss_groups.count_tracking
tss_groups.fpkm_tracking
tss_groups.read_group_tracking
var_model.info