Differential Expression
- Cuffdiff
- BI_vs_BC
- CDS
- genes
- BC_vs_BI_MAplot_count.pdf
- BC_vs_BI_MAplot.pdf
- BC_vs_BI_Scatter.pdf
- BC_vs_BI_Volcano.pdf
- BI_vs_BC_Boxplot.png
- BI_vs_BC_dendro_replicates.pdf
- BI_vs_BC_dendro.png
- BI_vs_BC_density.pdf
- BI_vs_BC_diffgenes.txt
- BI_vs_BC_dispersionPlot.pdf
- BI_vs_BC_genes_annotated.csv
- BI_vs_BC_genes.txt
- BI_vs_BC_MDSplot.pdf
- BI_vs_BC_ScatterMatrix.pdf
- isoforms
- TSS
- bias_params.info
- cds_exp.diff
- cds.count_tracking
- cds.diff
- cds.fpkm_tracking
- cds.read_group_tracking
- cuff.db
- gene_exp.diff
- genes.count_tracking
- genes.fpkm_tracking
- genes.read_group_tracking
- isoform_exp.diff
- isoforms.count_tracking
- isoforms.fpkm_tracking
- isoforms.read_group_tracking
- promoters.diff
- read_groups.info
- run.info
- splicing.diff
- tss_group_exp.diff
- tss_groups.count_tracking
- tss_groups.fpkm_tracking
- tss_groups.read_group_tracking
- var_model.info