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Tutorial RNASeq for detection of pre-tumoral biomarkers using a group case study of Proliferative Verrucous Leukoplakia

  1. Home
  2. Courses
  3. RNASeq Leukoplakia
  4. Pipeline mode: Tophat & Cufflinks protocol results
  5. 05_CUFFDIFF
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
  • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
  • 4. ACKNOWLEDGEMENTS
  • 5. BIBLIOGRAPHY
  • CITE US

05_CUFFDIFF

    • genesgenes
      • control_vs_enfermedad_MAplot_count.pdfcontrol_vs_enfermedad_MAplot_count.pdf
      • control_vs_enfermedad_MAplot.pdfcontrol_vs_enfermedad_MAplot.pdf
      • control_vs_enfermedad_Scatter.pdfcontrol_vs_enfermedad_Scatter.pdf
      • control_vs_enfermedad_Volcano.pdfcontrol_vs_enfermedad_Volcano.pdf
      • enfermedad_vs_control_Boxplot.png
      • enfermedad_vs_control_dendro_replicates.pdfenfermedad_vs_control_dendro_replicates.pdf
      • enfermedad_vs_control_dendro.png
      • enfermedad_vs_control_density.pdfenfermedad_vs_control_density.pdf
      • enfermedad_vs_control_diffgenes_combined_combined_with_ec.csvenfermedad_vs_control_diffgenes_combined_combined_with_ec.csv
      • enfermedad_vs_control_diffgenes.txtenfermedad_vs_control_diffgenes.txt
      • enfermedad_vs_control_dispersionPlot.pdfenfermedad_vs_control_dispersionPlot.pdf
      • enfermedad_vs_control_genes.txtenfermedad_vs_control_genes.txt
      • enfermedad_vs_control_MDSplot.pdfenfermedad_vs_control_MDSplot.pdf
      • enfermedad_vs_control_ScatterMatrix.pdfenfermedad_vs_control_ScatterMatrix.pdf
      • genes.count_tracking.genes.count_tracking.
      • genes.fpkm_tracking.genes.fpkm_tracking.
      • genes.read_group_tracking.genes.read_group_tracking.
      • read_groups.inforead_groups.info
Previous activity ◄ 04_CUFFLINKS
  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
    • 2.1.1 - Preparing your experiment
    • 2.1.2 - Quality analysis and preprocessing
    • 2.1.3 - Mapping
    • 2.1.4 - Transcriptome Assembly
    • 2.1.5 - Differential Expression analysis
    • 2.1.6 - GOSeq
    • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 4. ACKNOWLEDGEMENTS
    • Pipeline mode: Tophat & Cufflinks protocol results
    • 5. BIBLIOGRAPHY
    • CITE US
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