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Tutorial RNASeq for detection of pre-tumoral biomarkers using a group case study of Proliferative Verrucous Leukoplakia
Página Principal
Nuestros cursos
RNASeq Leukoplakia
Pipeline mode: Tophat & Cufflinks protocol results
05_CUFFDIFF
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating RNASeq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1. - TOPHAT/HISAT2 & CUFFLINKS
2.1.1 - Preparing your experiment
2.1.2 - Quality analysis and preprocessing
2.1.3 - Mapping
2.1.4 - Transcriptome Assembly
2.1.5 - Differential Expression analysis
2.1.6 - GOSeq
3. PIPELINE MODE TUTORIAL
3.1 - TopHat/Hisat2 & Cufflinks protocol
4. ACKNOWLEDGEMENTS
5. BIBLIOGRAPHY
CITE US
05_CUFFDIFF
genes
control_vs_enfermedad_MAplot_count.pdf
control_vs_enfermedad_MAplot.pdf
control_vs_enfermedad_Scatter.pdf
control_vs_enfermedad_Volcano.pdf
enfermedad_vs_control_Boxplot.png
enfermedad_vs_control_dendro_replicates.pdf
enfermedad_vs_control_dendro.png
enfermedad_vs_control_density.pdf
enfermedad_vs_control_diffgenes_combined_combined_with_ec.csv
enfermedad_vs_control_diffgenes.txt
enfermedad_vs_control_dispersionPlot.pdf
enfermedad_vs_control_genes.txt
enfermedad_vs_control_MDSplot.pdf
enfermedad_vs_control_ScatterMatrix.pdf
genes.count_tracking.
genes.fpkm_tracking.
genes.read_group_tracking.
read_groups.info
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01_FASTQC
02_PRINSEQ
03_TOPHAT
04_CUFFLINKS
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Calendario
Secciones del curso
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating RNASeq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1. - TOPHAT/HISAT2 & CUFFLINKS
2.1.1 - Preparing your experiment
2.1.2 - Quality analysis and preprocessing
2.1.3 - Mapping
2.1.4 - Transcriptome Assembly
2.1.5 - Differential Expression analysis
2.1.6 - GOSeq
3. PIPELINE MODE TUTORIAL
3.1 - TopHat/Hisat2 & Cufflinks protocol
4. ACKNOWLEDGEMENTS
Pipeline mode: Tophat & Cufflinks protocol results
5. BIBLIOGRAPHY
CITE US
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