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Tutorial RNASeq for detection of pre-tumoral biomarkers using a group case study of Proliferative Verrucous Leukoplakia
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Courses
RNASeq Leukoplakia
Pipeline mode: Tophat & Cufflinks protocol results
04_CUFFLINKS
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating RNASeq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1. - TOPHAT/HISAT2 & CUFFLINKS
2.1.1 - Preparing your experiment
2.1.2 - Quality analysis and preprocessing
2.1.3 - Mapping
2.1.4 - Transcriptome Assembly
2.1.5 - Differential Expression analysis
2.1.6 - GOSeq
3. PIPELINE MODE TUTORIAL
3.1 - TopHat/Hisat2 & Cufflinks protocol
4. ACKNOWLEDGEMENTS
5. BIBLIOGRAPHY
CITE US
04_CUFFLINKS
transcripts
JVB-R1_S1_R1_001.fasta.zip
JVB-R2_S2_R1_001.fasta.zip
JVB-R3_S8_R1_001.fasta.zip
JVB-R4_S9_R1_001.fasta.zip
JVB-R5_S3_R1_001.fasta.zip
JVB-R6_S4_R1_001.fasta.zip
JVB-R7_S10_R1_001.fasta.zip
JVB-R8_S11_R1_001.fasta.zip
JVB-R9_S5_R1_001.fasta.zip
JVB-R10_S12_R1_001.fasta.zip
JVB-R11_S6_R1_001.fasta.zip
JVB-R12_S7_R1_001.fasta.zip
JVB-R13_S13_R1_001.fasta.zip
JVB-R14_S14_R1_001.fasta.zip
JVB-R15_S15_R1_001.fasta.zip
JVB-R1_S1_R1_001.bam.zip
JVB-R2_S2_R1_001.bam.zip
JVB-R3_S8_R1_001.bam.zip
JVB-R4_S9_R1_001.bam.zip
JVB-R5_S3_R1_001.bam.zip
JVB-R6_S4_R1_001.bam.zip
JVB-R7_S10_R1_001.bam.zip
JVB-R8_S11_R1_001.bam.zip
JVB-R9_S5_R1_001.bam.zip
JVB-R10_S12_R1_001.bam.zip
JVB-R11_S6_R1_001.bam.zip
JVB-R12_S7_R1_001.bam.zip
JVB-R13_S13_R1_001.bam.zip
JVB-R14_S14_R1_001.bam.zip
JVB-R15_S15_R1_001.bam.zip
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Course sections
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating RNASeq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1. - TOPHAT/HISAT2 & CUFFLINKS
2.1.1 - Preparing your experiment
2.1.2 - Quality analysis and preprocessing
2.1.3 - Mapping
2.1.4 - Transcriptome Assembly
2.1.5 - Differential Expression analysis
2.1.6 - GOSeq
3. PIPELINE MODE TUTORIAL
3.1 - TopHat/Hisat2 & Cufflinks protocol
4. ACKNOWLEDGEMENTS
Pipeline mode: Tophat & Cufflinks protocol results
5. BIBLIOGRAPHY
CITE US
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