Tamaño de fuente
  • A-
  • A
  • A+
Color del sitio
  • R
  • A
  • A
  • A
eCampus
  • INICIO
    • eCAMPUS
    AULA
  • FORO
  • English ‎(en)‎ Español - Internacional ‎(es)‎
  • Acceder
Salta al contenido principal

Tutorial RNASeq for detection of pre-tumoral biomarkers using a group case study of Proliferative Verrucous Leukoplakia

  1. Página Principal
  2. Nuestros cursos
  3. RNASeq Leukoplakia
  4. Pipeline mode: Tophat & Cufflinks protocol results
  5. 04_CUFFLINKS
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
  • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
  • 4. ACKNOWLEDGEMENTS
  • 5. BIBLIOGRAPHY
  • CITE US

04_CUFFLINKS

    • transcriptstranscripts
      • JVB-R1_S1_R1_001.fasta.zipJVB-R1_S1_R1_001.fasta.zip
      • JVB-R2_S2_R1_001.fasta.zipJVB-R2_S2_R1_001.fasta.zip
      • JVB-R3_S8_R1_001.fasta.zipJVB-R3_S8_R1_001.fasta.zip
      • JVB-R4_S9_R1_001.fasta.zipJVB-R4_S9_R1_001.fasta.zip
      • JVB-R5_S3_R1_001.fasta.zipJVB-R5_S3_R1_001.fasta.zip
      • JVB-R6_S4_R1_001.fasta.zipJVB-R6_S4_R1_001.fasta.zip
      • JVB-R7_S10_R1_001.fasta.zipJVB-R7_S10_R1_001.fasta.zip
      • JVB-R8_S11_R1_001.fasta.zipJVB-R8_S11_R1_001.fasta.zip
      • JVB-R9_S5_R1_001.fasta.zipJVB-R9_S5_R1_001.fasta.zip
      • JVB-R10_S12_R1_001.fasta.zipJVB-R10_S12_R1_001.fasta.zip
      • JVB-R11_S6_R1_001.fasta.zipJVB-R11_S6_R1_001.fasta.zip
      • JVB-R12_S7_R1_001.fasta.zipJVB-R12_S7_R1_001.fasta.zip
      • JVB-R13_S13_R1_001.fasta.zipJVB-R13_S13_R1_001.fasta.zip
      • JVB-R14_S14_R1_001.fasta.zipJVB-R14_S14_R1_001.fasta.zip
      • JVB-R15_S15_R1_001.fasta.zipJVB-R15_S15_R1_001.fasta.zip
    • JVB-R1_S1_R1_001.bam.zipJVB-R1_S1_R1_001.bam.zip
    • JVB-R2_S2_R1_001.bam.zipJVB-R2_S2_R1_001.bam.zip
    • JVB-R3_S8_R1_001.bam.zipJVB-R3_S8_R1_001.bam.zip
    • JVB-R4_S9_R1_001.bam.zipJVB-R4_S9_R1_001.bam.zip
    • JVB-R5_S3_R1_001.bam.zipJVB-R5_S3_R1_001.bam.zip
    • JVB-R6_S4_R1_001.bam.zipJVB-R6_S4_R1_001.bam.zip
    • JVB-R7_S10_R1_001.bam.zipJVB-R7_S10_R1_001.bam.zip
    • JVB-R8_S11_R1_001.bam.zipJVB-R8_S11_R1_001.bam.zip
    • JVB-R9_S5_R1_001.bam.zipJVB-R9_S5_R1_001.bam.zip
    • JVB-R10_S12_R1_001.bam.zipJVB-R10_S12_R1_001.bam.zip
    • JVB-R11_S6_R1_001.bam.zipJVB-R11_S6_R1_001.bam.zip
    • JVB-R12_S7_R1_001.bam.zipJVB-R12_S7_R1_001.bam.zip
    • JVB-R13_S13_R1_001.bam.zipJVB-R13_S13_R1_001.bam.zip
    • JVB-R14_S14_R1_001.bam.zipJVB-R14_S14_R1_001.bam.zip
    • JVB-R15_S15_R1_001.bam.zipJVB-R15_S15_R1_001.bam.zip
Actividad previa ◄ 03_TOPHAT
Siguiente actividad 05_CUFFDIFF ►
  • Página Principal
  • Calendario
  • Secciones del curso
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
    • 2.1.1 - Preparing your experiment
    • 2.1.2 - Quality analysis and preprocessing
    • 2.1.3 - Mapping
    • 2.1.4 - Transcriptome Assembly
    • 2.1.5 - Differential Expression analysis
    • 2.1.6 - GOSeq
    • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 4. ACKNOWLEDGEMENTS
    • Pipeline mode: Tophat & Cufflinks protocol results
    • 5. BIBLIOGRAPHY
    • CITE US
Configuraciones de accesibilidad
About us
Team
Publications
R&D
Patents & trademarks
Announcements
Careers
Journal Sequencing Partners

Biotechvana

Valencia Lab
Parc Cientific Universitat de Valencia
Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
Contact us
Phone: +34 960 06 74 93
Email: biotechvana@biotechvana.com

Esta plataforma forma parte de: IVACE PROJECT IMDIGB/2020/56

Projectes de Digitalizació de PIME (DIGITALIZA-CV TELETREBALL)2020
IVACE PROJECT IMDIGB/2020/56
Biotechvana © 2021
eCampus Privacy policy    eCampus Terms of use