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Tutorial RNASeq for detection of pre-tumoral biomarkers using a group case study of Proliferative Verrucous Leukoplakia

  1. Home
  2. Courses
  3. RNASeq Leukoplakia
  4. PATHseq
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
  • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
  • 4. ACKNOWLEDGEMENTS
  • 5. BIBLIOGRAPHY
  • CITE US

PATHseq

    • diff_genes_Biased_Data.pdfdiff_genes_Biased_Data.pdf
    • diff_genes_GO.enrichment.samp.csvdiff_genes_GO.enrichment.samp.csv
    • diff_genes_GO.enrichment.wall.csvdiff_genes_GO.enrichment.wall.csv
    • diff_genes_GO.samp.csvdiff_genes_GO.samp.csv
    • diff_genes_GO.wall.csvdiff_genes_GO.wall.csv
    • diff_genes_pwf_fit.pdfdiff_genes_pwf_fit.pdf
    • diff_genes_pwf.csvdiff_genes_pwf.csv
    • diff_genes_WALLvsNOBIAS.pdfdiff_genes_WALLvsNOBIAS.pdf
    • diff_genes_WALLvsSAMP.pdfdiff_genes_WALLvsSAMP.pdf
    • goseq_loggoseq_log
  • PATHseq
  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
    • 2.1.1 - Preparing your experiment
    • 2.1.2 - Quality analysis and preprocessing
    • 2.1.3 - Mapping
    • 2.1.4 - Transcriptome Assembly
    • 2.1.5 - Differential Expression analysis
    • 2.1.6 - GOSeq
    • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 4. ACKNOWLEDGEMENTS
    • Pipeline mode: Tophat & Cufflinks protocol results
    • 5. BIBLIOGRAPHY
    • CITE US
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