goseq_oa     -s   /data_store/ahafez/bagan/JVB-R/10_METseq/gene_size.txt   -c   /data_store/ahafez/bagan/JVB-R/10_METseq/maps_homo_sapiens.txt   -a   /data_store/ahafez/bagan/JVB-R/10_METseq/assayed_genes.txt


##[1549368845]##Processing##[/data_store/ahafez/bagan/JVB-R/10_METseq/diff_genes.csv]

Processing : /data_store/ahafez/bagan/JVB-R/10_METseq/diff_genes.csv
[1] "Using default Threshold 0.05"
[1] "Using default pValue Correction method BH-FDR "
[1] "After finishing the result will be stored in :  /data_store/ahafez/bagan/JVB-R/10_METseq/metseq_result"
[1] "Reading  /data_store/ahafez/bagan/JVB-R/10_METseq/diff_genes.csv"
Read 140 items
[1] "Reading  /data_store/ahafez/bagan/JVB-R/10_METseq/assayed_genes.txt"
Read 64914 items
[1] "Reading  /data_store/ahafez/bagan/JVB-R/10_METseq/gene_size.txt"
Read 64914 items
[1] "Reading  /data_store/ahafez/bagan/JVB-R/10_METseq/maps_homo_sapiens.txt"
[1] "Finish reading input."
Warning message:
In pcls(G) : initial point very close to some inequality constraints
pdf 
  2 
Using manually entered categories.
Calculating the p-values...
[1] "Using manually entered categories."
[1] "Running the simulation..."
Using manually entered categories.
Running the simulation...
Calculating the p-values...
pdf 
  2 
Using manually entered categories.
Calculating the p-values...
pdf 
  2 
[1] TRUE
[1] "Goseq Finished."


##[1549368888]##Processed##[/data_store/ahafez/bagan/JVB-R/10_METseq/diff_genes.csv]