VariantSeq: tutorial for usage with case study.

We aim to provide end users with sufficient information and training materials to guide them through the management of server-side pipelines and workflows for characterizing Single Point Mutations and Indels (SPMI) in VariantSeq and GPRO Server Side. The tutorial will enable the user get familiarize themselves with the two execution modes VariantSeq.

Execution modes:

• Step-by-step mode: the different steps of the variant analysis workflow (for instance, quality analysis, preprocessing, postprocessing, mapping, variant calling, variant filtering, and annotation) are organized into individual tabs that summarize the command line interface (CLI) software available for each step.

• Pipeline mode: allows the user to automatically run all the steps of the workflow as a pipeline.

For more details, the manual for VariantSeq is available at https://gpro.biotechvana.com/tool/variantseq/manual/overview