1. PRELIMINARY INFORMATION►

  • CONTENTS

    1. PRELIMINARY INFORMATION

        1.1 - Tutorial objective

        1.2 - Tutorial material and case study

        1.3 - Experiment design and support

        1.4 - Installing and activating VariantSeq and the Server-Side

    2. STEP-BY-STEP MODE TUTORIAL

        2.1. - Preparing your experiment

        2.2 - Quality analysis and preprocessing

               - Quality analysis

               - Preprocessing

        2.3 - Mapping

        2.4 - Postprocessing

               - AddReplaceGroups

               - MarkDuplicates

               - Base quality score recalibration (BQSR)

             2.1.5 - Variant calling

        2.6 - Variant filtering

        2.7 - Annotation

    3. PIPELINE MODE TUTORIAL

    4. BIBLIOGRAPHY

    1. PRELIMINARY INFORMATION►