##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="Accept as a confident somatic mutation">
##FILTER=<ID=REJECT,Description="Rejected as a confident somatic mutation">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=BQ,Number=A,Type=Float,Description="Average base quality for reads supporting alleles">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=FA,Number=A,Type=Float,Description="Allele fraction of the alternate allele with regard to reference">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=SS,Number=1,Type=Integer,Description="Variant status relative to non-adjacent Normal,0=wildtype,1=germline,2=somatic,3=LOH,4=post-transcriptional modification,5=unknown">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.4-46-gbc02625,Date="Tue Oct 20 00:04:40 CEST 2015",Epoch=1445292280427,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=[intervals_list.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=100 reference_sequence=ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=200 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=SRR768531.final.vcf)]), (RodBindingCollection [(RodBinding name=variant2 source=SRR768530.final.vcf)]), (RodBindingCollection [(RodBinding name=variant3 source=SRR768529.final.vcf)]), (RodBindingCollection [(RodBinding name=variant4 source=SRR766062.final.vcf)]), (RodBindingCollection [(RodBinding name=variant5 source=SRR766027.final.vcf)]), (RodBindingCollection [(RodBinding name=variant6 source=SRR766011.final.vcf)]), (RodBindingCollection [(RodBinding name=variant7 source=SRR766005.final.vcf)]), (RodBindingCollection [(RodBinding name=variant8 source=SRR765982.final.vcf)]), (RodBindingCollection [(RodBinding name=variant9 source=SRR765992.final.vcf)]), (RodBindingCollection [(RodBinding name=variant10 source=SRR764760.final.vcf)]), (RodBindingCollection [(RodBinding name=variant11 source=SRR764761.final.vcf)])] out=/data2/cllorens2/10_pon/HPON.vcf genotypemergeoption=UNIQUIFY filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=null printComplexMerges=false filteredAreUncalled=true minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic event">
##INFO=<ID=VT,Number=1,Type=String,Description="Variant type, can be SNP, INS or DEL">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##MuTect="analysis_type=MuTect input_file=[/data1/cllorens2/humanos/9_PON/SRR768529.final.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null tag=NA read_filter=[] intervals=[intervals_list.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data1/cllorens2/scripts/bundle_hg19/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableRandomization=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=200 enable_experimental_downsampling=false baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=SILENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false noop=false enable_extended_output=false artifact_detection_mode=true tumor_sample_name=sampleSRR768529 bam_tumor_sample_name=null normal_sample_name=none force_output=false force_alleles=false only_passing_calls=false initial_tumor_lod=4.0 tumor_lod=6.3 fraction_contamination=0.02 minimum_mutation_cell_fraction=0.0 normal_lod=-3.4028235E38 normal_artifact_lod=3.4028235E38 strand_artifact_lod=2.0 strand_artifact_power_threshold=0.9 dbsnp_normal_lod=-3.4028235E38 somatic_classification_normal_power_threshold=0.95 minimum_normal_allele_fraction=0.0 tumor_f_pretest=0.005 min_qscore=5 gap_events_threshold=3 heavily_clipped_read_fraction=0.3 clipping_bias_pvalue_threshold=0.05 fraction_mapq0_threshold=0.5 pir_median_threshold=10.0 pir_mad_threshold=3.0 required_maximum_alt_allele_mapping_quality_score=20 max_alt_alleles_in_normal_count=2 max_alt_alleles_in_normal_qscore_sum=20 max_alt_allele_in_normal_fraction=0.03 power_constant_qscore=30 absolute_copy_number_data=null power_constant_af=0.30000001192092896 vcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub dbsnp=[(RodBinding name=dbsnp source=/data1/cllorens2/scripts/bundle_hg19/dbsnp_138.hg19.vcf)] cosmic=[(RodBinding name=cosmic source=/data1/cllorens2/scripts/bundle_hg19/WGSCoding19.vcf)] normal_panel=[] coverage_20_q20_file=null power_file=null tumor_depth_file=null normal_depth_file=null filter_mismatching_base_and_quals=false"
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
##contig=<ID=chr3,length=198022430,assembly=hg19>
##contig=<ID=chr4,length=191154276,assembly=hg19>
##contig=<ID=chr5,length=180915260,assembly=hg19>
##contig=<ID=chr6,length=171115067,assembly=hg19>
##contig=<ID=chr7,length=159138663,assembly=hg19>
##contig=<ID=chr8,length=146364022,assembly=hg19>
##contig=<ID=chr9,length=141213431,assembly=hg19>
##contig=<ID=chr10,length=135534747,assembly=hg19>
##contig=<ID=chr11,length=135006516,assembly=hg19>
##contig=<ID=chr12,length=133851895,assembly=hg19>
##contig=<ID=chr13,length=115169878,assembly=hg19>
##contig=<ID=chr14,length=107349540,assembly=hg19>
##contig=<ID=chr15,length=102531392,assembly=hg19>
##contig=<ID=chr16,length=90354753,assembly=hg19>
##contig=<ID=chr17,length=81195210,assembly=hg19>
##contig=<ID=chr18,length=78077248,assembly=hg19>
##contig=<ID=chr19,length=59128983,assembly=hg19>
##contig=<ID=chr20,length=63025520,assembly=hg19>
##contig=<ID=chr21,length=48129895,assembly=hg19>
##contig=<ID=chr22,length=51304566,assembly=hg19>
##contig=<ID=chrX,length=155270560,assembly=hg19>
##contig=<ID=chrY,length=59373566,assembly=hg19>
##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
##contig=<ID=chr4_ctg9_hap1,length=590426,assembly=hg19>
##contig=<ID=chr4_gl000193_random,length=189789,assembly=hg19>
##contig=<ID=chr4_gl000194_random,length=191469,assembly=hg19>
##contig=<ID=chr6_apd_hap1,length=4622290,assembly=hg19>
##contig=<ID=chr6_cox_hap2,length=4795371,assembly=hg19>
##contig=<ID=chr6_dbb_hap3,length=4610396,assembly=hg19>
##contig=<ID=chr6_mann_hap4,length=4683263,assembly=hg19>
##contig=<ID=chr6_mcf_hap5,length=4833398,assembly=hg19>
##contig=<ID=chr6_qbl_hap6,length=4611984,assembly=hg19>
##contig=<ID=chr6_ssto_hap7,length=4928567,assembly=hg19>
##contig=<ID=chr7_gl000195_random,length=182896,assembly=hg19>
##contig=<ID=chr8_gl000196_random,length=38914,assembly=hg19>
##contig=<ID=chr8_gl000197_random,length=37175,assembly=hg19>
##contig=<ID=chr9_gl000198_random,length=90085,assembly=hg19>
##contig=<ID=chr9_gl000199_random,length=169874,assembly=hg19>
##contig=<ID=chr9_gl000200_random,length=187035,assembly=hg19>
##contig=<ID=chr9_gl000201_random,length=36148,assembly=hg19>
##contig=<ID=chr11_gl000202_random,length=40103,assembly=hg19>
##contig=<ID=chr17_ctg5_hap1,length=1680828,assembly=hg19>
##contig=<ID=chr17_gl000203_random,length=37498,assembly=hg19>
##contig=<ID=chr17_gl000204_random,length=81310,assembly=hg19>
##contig=<ID=chr17_gl000205_random,length=174588,assembly=hg19>
##contig=<ID=chr17_gl000206_random,length=41001,assembly=hg19>
##contig=<ID=chr18_gl000207_random,length=4262,assembly=hg19>
##contig=<ID=chr19_gl000208_random,length=92689,assembly=hg19>
##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
##contig=<ID=chr21_gl000210_random,length=27682,assembly=hg19>
##contig=<ID=chrUn_gl000211,length=166566,assembly=hg19>
##contig=<ID=chrUn_gl000212,length=186858,assembly=hg19>
##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
##contig=<ID=chrUn_gl000214,length=137718,assembly=hg19>
##contig=<ID=chrUn_gl000215,length=172545,assembly=hg19>
##contig=<ID=chrUn_gl000216,length=172294,assembly=hg19>
##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
##contig=<ID=chrUn_gl000219,length=179198,assembly=hg19>
##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
##contig=<ID=chrUn_gl000221,length=155397,assembly=hg19>
##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
##contig=<ID=chrUn_gl000226,length=15008,assembly=hg19>
##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
##contig=<ID=chrUn_gl000228,length=129120,assembly=hg19>
##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##reference=file:///data2/cllorens2/10_pon/ucsc.hg19.fasta
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	none.variant	none.variant10	none.variant11	none.variant2	none.variant3	none.variant4	none.variant5	none.variant6	none.variant7	none.variant8	none.variant9	sampleSRR764760.variant10	sampleSRR764761.variant11	sampleSRR765982.variant8	sampleSRR765992.variant9	sampleSRR766005.variant7	sampleSRR766011.variant6	sampleSRR766027.variant5	sampleSRR766062.variant4	sampleSRR768529.variant3	sampleSRR768530.variant2	sampleSRR768531.variant
chr1	30376	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:83,10:33:93:0.108:2	0/1:54,6:32:60:0.100:2	./.	0/1:114,7:31:121:0.058:2	0/1:66,8:28:74:0.108:2	0/1:124,4:32:128:0.031:2	0/1:50,10:31:60:0.167:2	./.	0/1:121,10:32:131:0.076:2	0/1:80,8:32:88:0.091:2	0/1:182,14:32:196:0.071:2
chr1	30411	.	G	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,36:33:99:0.364:2	0/1:57,13:33:70:0.186:2	./.	0/1:100,16:32:116:0.138:2	0/1:64,16:31:80:0.200:2	0/1:107,16:32:123:0.130:2	0/1:36,21:32:59:0.368:2	0/1:56,15:31:71:0.211:2	0/1:100,29:33:129:0.225:2	0/1:65,17:33:82:0.207:2	0/1:164,27:33:191:0.141:2
chr1	30489	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,12:32:129:0.093:2	0/1:88,11:32:99:0.111:2	./.	./.	./.	0/1:169,8:31:177:0.045:2	./.	0/1:107,4:32:111:0.036:2	0/1:161,13:33:174:0.075:2	0/1:98,8:31:106:0.075:2	0/1:186,13:30:199:0.065:2
chr1	35142	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,12:32:167:0.072:2	./.	./.	./.
chr1	35172	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.	0/1:109,6:30:115:0.052:2	./.	./.	./.	./.
chr1	69270	rs201219564	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:129,53:30:183:0.291:2	0/1:137,57:28:194:0.294:2	0/1:104,42:29:146:0.288:2	./.	0/1:177,12:29:189:0.063:2	0/1:171,19:31:190:0.100:2	0/1:170,27:31:197:0.137:2	0/1:159,36:29:195:0.185:2	0/1:161,22:32:186:0.120:2	0/1:152,34:32:187:0.183:2	0/1:164,23:29:190:0.123:2
chr1	69369	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,19:31:197:0.096:2	./.	./.	./.
chr1	69428	rs140739101	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,12:31:82:0.146:2	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	0/1:193,5:29:198:0.025:2	0/1:178,6:30:184:0.033:2
chr1	69511	rs75062661	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,187:29:188:1.00:2	0/1:0,179:29:179:1.00:2	0/1:0,103:29:103:1.00:2	0/1:1,4:31:5:0.800:2	0/1:1,183:29:184:0.995:2	0/1:0,183:29:183:1.00:2	0/1:0,190:29:190:1.00:2	0/1:1,181:29:182:0.995:2	0/1:0,179:29:179:1.00:2	0/1:1,187:28:188:0.995:2	0/1:1,187:28:188:0.995:2
chr1	69552	rs55874132	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,33:34:193:0.171:2	./.	./.
chr1	69569	rs372127752	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr1	69761	rs200505207	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,17:31:197:0.086:2	./.	0/1:168,26:32:194:0.134:2	0/1:172,23:33:195:0.118:2	./.	./.
chr1	69768	rs373014042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	69849	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,21:30:199:0.106:2	./.	./.	./.	./.	./.
chr1	69897	rs200676709	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:131,67:30:198:0.338:2	0/1:125,72:29:197:0.365:2	0/1:40,21:29:61:0.344:2	./.	0/1:172,26:29:198:0.131:2	0/1:171,23:30:194:0.119:2	0/1:162,37:30:199:0.186:2	0/1:159,38:29:197:0.193:2	0/1:164,34:31:198:0.172:2	0/1:172,27:30:199:0.136:2	0/1:156,37:30:193:0.192:2
chr1	69932	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,19:29:197:0.096:2	0/1:168,28:30:196:0.143:2	./.	./.	./.	./.
chr1	762109	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,22:31:196:0.112:2	./.	./.	./.	./.
chr1	762273	rs3115849	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,131:32:131:1.00:2	0/1:105,82:30:187:0.439:2	0/1:3,149:32:152:0.980:2	0/1:2,166:32:168:0.988:2	0/1:1,138:31:139:0.993:2	0/1:0,135:32:135:1.00:2	0/1:76,51:32:127:0.402:2	0/1:0,122:32:122:1.00:2
chr1	762307	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:152,6:32:158:0.038:2	0/1:105,5:30:110:0.045:2	./.	0/1:180,6:30:187:0.032:2	./.	./.	./.	./.	./.	./.	0/1:149,5:33:155:0.032:2
chr1	762330	rs74045217	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:176,17:30:193:0.088:2	0/1:102,10:31:112:0.089:2	./.	0/1:177,11:30:188:0.059:2	./.	./.	0/1:183,7:30:190:0.037:2	./.	0/1:181,12:31:193:0.062:2	./.	0/1:152,20:30:172:0.116:2
chr1	762345	rs74045218	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:173,21:26:194:0.108:2	0/1:103,13:27:116:0.112:2	./.	0/1:176,19:28:195:0.097:2	./.	./.	0/1:187,10:26:197:0.051:2	./.	0/1:178,16:28:194:0.082:2	./.	0/1:154,25:24:179:0.140:2
chr1	762472	rs145493205	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,11:29:182:0.060:2	./.	./.	./.	./.	0/1:157,18:28:175:0.103:2	./.
chr1	762485	rs148989274	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,13:29:171:0.076:2	./.	./.	./.	./.	0/1:145,23:29:168:0.137:2	./.
chr1	762569	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,11:32:93:0.118:2	./.	./.	./.	./.	./.	./.	./.
chr1	762579	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,5:28:74:0.068:2	0/1:42,6:27:48:0.125:2	0/1:13,4:28:17:0.235:2	0/1:72,9:25:81:0.111:2	./.	0/1:55,19:25:74:0.257:2	./.	./.	0/1:62,16:27:78:0.205:2	./.	0/1:40,7:23:47:0.149:2
chr1	762589	rs71507461	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,42:27:52:0.808:2	0/1:10,22:27:32:0.688:2	0/1:4,9:27:13:0.692:2	0/1:8,44:26:52:0.846:2	0/1:59,30:26:89:0.337:2	0/1:15,36:28:51:0.706:2	0/1:2,44:28:46:0.957:2	0/1:1,52:27:53:0.981:2	0/1:14,40:27:54:0.741:2	0/1:56,11:26:67:0.164:2	0/1:8,18:28:26:0.692:2
chr1	762592	rs71507462	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,42:30:53:0.792:2	0/1:11,21:29:32:0.656:2	0/1:4,9:31:13:0.692:2	0/1:8,43:30:51:0.843:2	0/1:59,29:29:89:0.330:2	0/1:15,36:28:51:0.706:2	0/1:2,44:29:46:0.957:2	0/1:1,52:30:53:0.981:2	0/1:13,39:31:52:0.750:2	0/1:56,11:31:67:0.164:2	0/1:7,18:29:25:0.720:2
chr1	762601	rs71507463	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,41:32:52:0.788:2	0/1:11,24:33:35:0.686:2	0/1:4,11:32:15:0.733:2	0/1:8,45:32:53:0.849:2	0/1:55,32:32:87:0.368:2	0/1:15,45:32:60:0.750:2	0/1:2,51:32:53:0.962:2	0/1:1,59:32:60:0.983:2	0/1:15,38:33:53:0.717:2	0/1:57,12:32:69:0.174:2	0/1:9,17:32:26:0.654:2
chr1	762632	rs61768173	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,28:33:37:0.757:2	0/1:8,24:32:32:0.750:2	0/1:2,7:33:9:0.778:2	0/1:6,38:32:44:0.864:2	0/1:58,37:31:96:0.389:2	0/1:7,53:30:60:0.883:2	0/1:1,63:31:64:0.984:2	0/1:1,50:32:51:0.980:2	0/1:6,40:34:47:0.870:2	0/1:45,15:32:60:0.250:2	0/1:6,30:30:36:0.833:2
chr1	762815	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,12:28:66:0.182:2	./.	./.	./.	./.
chr1	762852	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,17:30:78:0.218:2	./.	./.	./.	./.
chr1	762886	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,16:33:72:0.222:2	./.	./.	./.	./.
chr1	877831	rs6672356	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.
chr1	878331	rs148327885	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:32:50:0.620:2	0/1:4,12:30:16:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	879317	rs7523549	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:30:30:0.567:2	./.
chr1	880502	rs74047418	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,42:33:79:0.532:2	./.	./.	./.	./.
chr1	881627	rs2272757	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:31:53:0.472:2	0/1:13,17:31:30:0.567:2	0/1:0,5:31:5:1.00:2	0/1:50,44:32:94:0.468:2	0/1:36,36:32:72:0.500:2	./.	0/1:44,19:32:63:0.302:2	0/1:43,50:31:93:0.538:2	./.	0/1:35,24:32:59:0.407:2	0/1:24,42:31:66:0.636:2
chr1	886591	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,5:32:132:0.038:2	./.	./.	./.
chr1	887801	rs3828047	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,31:32:31:1.00:2	0/1:29,24:32:53:0.453:2	0/1:0,35:32:35:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,22:31:22:1.00:2
chr1	888563	rs150127608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr1	888639	rs201746872	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,167:32:168:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,166:32:166:1.00:2	0/1:102,69:31:171:0.404:2	0/1:0,131:32:131:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,179:32:179:1.00:2
chr1	888659	rs3748597	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:31:95:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,165:32:165:1.00:2	0/1:1,134:31:135:0.993:2	0/1:0,163:32:163:1.00:2	0/1:91,63:31:154:0.409:2	0/1:0,133:32:133:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,147:31:147:1.00:2
chr1	889238	rs3828049	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:30:66:0.545:2	./.	./.	./.	./.
chr1	891486	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.
chr1	891528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.
chr1	891550	rs370709441	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.
chr1	892309	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.	./.	./.
chr1	892323	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.
chr1	894573	rs13303010	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,38:30:38:1.00:2	0/1:16,20:32:36:0.556:2	0/1:0,59:31:59:1.00:2	0/1:0,31:32:31:1.00:2	0/1:17,8:31:25:0.320:2	0/1:0,29:30:29:1.00:2
chr1	897325	rs4970441	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,136:32:136:1.00:2	0/1:2,175:32:177:0.989:2	0/1:0,157:32:157:1.00:2	0/1:86,73:32:159:0.459:2	0/1:0,162:31:162:1.00:2	0/1:2,153:33:155:0.987:2	0/1:0,108:32:108:1.00:2	0/1:0,92:31:92:1.00:2
chr1	897738	rs6696971	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	./.	./.	./.	./.
chr1	898086	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2
chr1	900505	rs28705211	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,30:29:66:0.455:2	0/1:15,15:30:30:0.500:2	./.	0/1:44,64:30:109:0.593:2	0/1:67,69:30:136:0.507:2	0/1:4,100:30:104:0.962:2	./.	0/1:53,65:30:118:0.551:2	0/1:0,88:31:88:1.00:2	./.	0/1:21,27:30:48:0.563:2
chr1	906272	rs28507236	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2
chr1	908319	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,8:16:37:0.216:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	908325	rs181207265	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,8:18:37:0.216:2	./.	./.	./.	./.	0/1:29,6:17:35:0.171:2	./.	0/1:51,13:15:65:0.203:2	./.	0/1:32,7:15:39:0.179:2	0/1:17,5:22:22:0.227:2
chr1	909238	rs3829740	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,19:33:31:0.613:2	0/1:13,12:32:25:0.480:2	0/1:5,4:34:9:0.444:2	0/1:0,89:32:89:1.00:2	0/1:29,24:31:53:0.453:2	0/1:1,67:32:68:0.985:2	0/1:19,14:31:33:0.424:2	0/1:35,23:31:58:0.397:2	0/1:20,17:34:37:0.459:2	./.	0/1:0,33:32:33:1.00:2
chr1	909309	rs3829738	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,55:32:57:0.965:2	./.	./.	0/1:22,9:34:31:0.290:2	./.	./.
chr1	909768	rs2340593	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:52:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,46:32:46:1.00:2	0/1:1,64:33:65:0.985:2
chr1	911595	rs7417106	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:28:15:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,4:30:4:1.00:2	0/1:1,24:29:25:0.960:2	0/1:0,24:28:24:1.00:2	./.	0/1:0,26:28:26:1.00:2	0/1:1,20:29:21:0.952:2	./.	0/1:14,6:28:20:0.300:2	0/1:0,10:27:10:1.00:2
chr1	911916	rs74045046	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,85:30:85:1.00:2	./.	./.	0/1:53,50:31:103:0.485:2	./.	./.
chr1	914333	rs13302979	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,12:32:12:1.00:2	./.	./.	./.	./.	./.	0/1:5,4:30:9:0.444:2	0/1:0,5:33:5:1.00:2
chr1	914582	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,21:30:36:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr1	914727	rs181798425	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr1	914839	rs34903276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:31:25:0.480:2
chr1	914852	rs13303368	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,11:32:11:1.00:2	0/1:1,4:34:5:0.800:2	0/1:2,22:32:24:0.917:2	0/1:33,14:32:47:0.298:2	./.	0/1:21,6:31:27:0.222:2	0/1:16,11:32:27:0.407:2	./.	0/1:14,5:31:19:0.263:2	0/1:0,33:30:33:1.00:2
chr1	914876	rs13302983	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,63:30:63:1.00:2	0/1:1,48:29:49:0.980:2	0/1:0,38:29:38:1.00:2	0/1:40,24:30:64:0.375:2	0/1:18,8:30:26:0.308:2	0/1:0,52:29:52:1.00:2
chr1	914940	rs13303033	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:27:28:1.00:2	0/1:0,23:28:23:1.00:2	0/1:5,3:29:8:0.375:2	0/1:1,52:29:53:0.981:2	0/1:34,16:26:50:0.320:2	./.	0/1:31,19:28:50:0.380:2	0/1:32,12:28:44:0.273:2	./.	0/1:23,11:29:34:0.324:2	0/1:0,43:27:43:1.00:2
chr1	915227	rs13303355	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,91:32:92:0.989:2	0/1:0,143:31:143:1.00:2	0/1:0,91:32:92:1.00:2	0/1:1,136:32:137:0.993:2	0/1:0,96:32:96:1.00:2	0/1:48,43:34:91:0.473:2	0/1:37,24:31:61:0.393:2	0/1:0,74:32:74:1.00:2
chr1	915246	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,16:10:85:0.188:2	./.	./.	./.	./.	./.	./.	./.
chr1	915388	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,6:25:162:0.037:2	./.	./.	./.	0/1:149,5:31:154:0.032:2	./.	./.	0/1:143,4:31:147:0.027:2
chr1	915440	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:28:100:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	915449	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,7:30:137:0.051:2	0/1:102,4:31:106:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	915460	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,6:26:123:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	916549	rs6660139	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,23:27:23:1.00:2	./.	0/1:1,66:28:67:0.985:2	0/1:34,33:28:67:0.493:2	0/1:0,64:28:64:1.00:2	0/1:32,23:28:55:0.418:2	0/1:46,36:27:82:0.439:2	0/1:31,36:29:67:0.537:2	0/1:29,19:29:48:0.396:2	0/1:0,43:27:44:1.00:2
chr1	935222	rs2298214	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	948921	rs15842	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,118:30:120:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,127:30:128:1.00:2	0/1:0,97:30:97:1.00:2	0/1:49,40:29:89:0.449:2	0/1:0,59:30:59:1.00:2
chr1	949608	rs1921	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	0/1:59,43:30:102:0.422:2	0/1:59,45:31:104:0.433:2	0/1:65,18:31:83:0.217:2	0/1:60,60:30:120:0.500:2	0/1:50,31:31:81:0.383:2	./.	./.
chr1	949654	rs8997	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,56:30:56:1.00:2	0/1:1,77:31:78:0.987:2	0/1:0,62:32:63:1.00:2	0/1:39,31:30:70:0.443:2	0/1:0,42:30:42:1.00:2
chr1	970691	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2
chr1	978762	rs138288952	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	981931	rs2465128	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:0,3:26:3:1.00:2	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,7:30:7:1.00:2	./.	0/1:4,6:27:10:0.600:2	./.
chr1	982062	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.
chr1	982994	rs10267	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,63:31:63:1.00:2	./.	0/1:2,176:32:178:0.989:2	0/1:0,90:32:90:1.00:2	0/1:2,132:32:134:0.985:2	0/1:0,125:32:125:1.00:2	0/1:0,166:32:166:1.00:2	0/1:119,72:33:191:0.377:2	0/1:74,39:32:113:0.345:2	0/1:1,126:33:127:0.992:2
chr1	984302	rs9442391	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,11:32:11:1.00:2	./.	0/1:0,20:30:20:1.00:2	./.	./.	0/1:1,12:30:13:0.923:2	0/1:0,26:31:26:1.00:2	0/1:24,17:33:41:0.415:2	0/1:19,20:31:39:0.513:2	0/1:0,10:32:10:1.00:2
chr1	984971	rs111818381	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.	./.	./.	./.	./.
chr1	985855	rs147990356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:30:99:0.485:2	./.	./.	./.	./.	./.
chr1	986443	rs2710887	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,28:32:28:1.00:2	0/1:6,9:32:15:0.600:2	0/1:0,51:31:51:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,91:32:92:0.989:2	0/1:31,31:31:62:0.500:2	0/1:41,25:32:66:0.379:2	0/1:0,68:32:68:1.00:2
chr1	987200	rs9803031	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:31:118:1.00:2	0/1:0,69:31:69:1.00:2	0/1:17,6:31:23:0.261:2	0/1:0,151:31:152:1.00:2	0/1:1,149:31:150:0.993:2	0/1:0,128:31:128:1.00:2	0/1:0,139:31:139:1.00:2	0/1:4,140:31:144:0.972:2	0/1:84,77:32:161:0.478:2	0/1:54,76:31:131:0.585:2	0/1:0,110:31:110:1.00:2
chr1	989281	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	990280	rs4275402	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,10:30:10:1.00:2	./.	0/1:0,9:30:9:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,6:25:6:1.00:2
chr1	1019753	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,10:11:33:0.303:2	./.	./.	./.
chr1	1021346	rs10907177	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,16:32:33:0.485:2	0/1:12,10:30:22:0.455:2	./.	./.	./.	0/1:33,19:33:52:0.365:2	./.	./.	./.	./.	./.
chr1	1026707	rs4074137	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,25:31:26:0.962:2	0/1:0,21:31:21:1.00:2	./.	0/1:2,43:31:45:0.956:2	0/1:9,19:29:28:0.679:2	./.	0/1:16,13:32:29:0.448:2	0/1:0,35:31:35:1.00:2	./.	0/1:17,15:32:32:0.469:2	0/1:0,12:31:12:1.00:2
chr1	1026870	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.
chr1	1026913	rs115662838	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:31:50:0.580:2	0/1:21,5:32:26:0.192:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1115510	rs114359609	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:32:54:0.556:2	./.	./.	./.	./.	./.
chr1	1115548	rs114390380	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	0/1:18,47:32:65:0.723:2	./.	./.	./.	./.	./.	./.
chr1	1116231	rs13374146	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,20:29:49:0.408:2	./.	./.	./.	./.	./.	./.	./.
chr1	1118275	rs61733845	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,64:30:136:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr1	1120377	rs116321663	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,36:32:70:0.514:2	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1120431	rs1320571	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,75:31:178:0.421:2	./.	./.	./.	0/1:115,78:31:193:0.404:2	./.	./.	./.
chr1	1132938	rs2274791	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1140871	rs142770542	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,38:29:96:0.396:2	./.	./.	./.	./.
chr1	1147422	rs17568	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,28:30:55:0.509:2	0/1:16,16:31:32:0.500:2	./.	0/1:34,33:28:67:0.493:2	./.	./.	./.	0/1:35,23:29:58:0.397:2	./.	./.	./.
chr1	1148445	rs34160451	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,15:29:50:0.300:2	./.	./.	./.
chr1	1149164	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1153113	rs12036216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:30:30:0.500:2	./.	./.	./.
chr1	1158631	rs6603781	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,150:29:151:1.00:2	0/1:2,103:28:105:0.981:2	0/1:1,22:29:23:0.957:2	0/1:106,82:28:188:0.436:2	0/1:1,188:29:189:0.995:2	0/1:105,82:29:187:0.439:2	0/1:0,178:29:178:1.00:2	0/1:1,175:28:176:0.994:2	0/1:103,88:29:191:0.461:2	0/1:0,181:28:181:1.00:2	0/1:0,172:27:172:1.00:2
chr1	1178245	rs11260566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:30:70:0.400:2	./.	./.	./.
chr1	1178482	rs78555129	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,10:30:39:0.256:2	./.	./.	./.
chr1	1178855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.
chr1	1178925	rs12093154	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:30:17:0.529:2	./.	./.	./.
chr1	1179800	rs115586508	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:29:71:0.563:2	./.	./.	./.
chr1	1219360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr1	1220954	rs12751100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.
chr1	1220988	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,66:29:184:0.359:2	./.	./.	./.	./.	./.
chr1	1222963	rs74735644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:32:16:0.625:2	./.
chr1	1226348	rs373520165	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,46:27:91:0.505:2	./.	./.	./.	./.
chr1	1226507	rs183010802	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:27:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1229261	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1231587	rs139600717	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:30:86:0.523:2	./.	./.	./.
chr1	1246004	rs2296474	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,63:32:64:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,47:32:47:1.00:2	0/1:45,27:32:72:0.375:2
chr1	1246303	rs41285824	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,50:32:92:0.549:2	./.	./.	./.	0/1:49,30:33:79:0.380:2	./.
chr1	1247494	rs12103	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:29:12:1.00:2	0/1:0,14:27:14:1.00:2	0/1:1,3:30:4:0.750:2	0/1:1,34:29:35:0.971:2	0/1:0,34:29:34:1.00:2	0/1:0,27:28:27:1.00:2	0/1:26,9:29:35:0.257:2	0/1:0,30:29:30:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,25:28:25:1.00:2	0/1:18,6:21:24:0.250:2
chr1	1248283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2	./.	./.
chr1	1248469	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.	./.	./.
chr1	1249187	rs12142199	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,75:32:76:1.00:2	0/1:12,11:32:23:0.478:2	0/1:0,174:32:174:1.00:2	0/1:3,189:31:192:0.984:2	0/1:0,183:31:183:1.00:2	0/1:120,75:32:195:0.385:2	0/1:6,178:32:184:0.967:2	0/1:3,160:33:163:0.982:2	0/1:1,149:32:150:0.993:2	0/1:87,98:32:185:0.530:2
chr1	1254436	rs1886773	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:27:44:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,66:29:67:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,61:29:61:1.00:2	0/1:20,16:29:36:0.444:2
chr1	1254443	rs1886772	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,44:32:44:1.00:2	0/1:1,73:32:74:0.986:2	0/1:1,47:31:48:0.979:2	0/1:0,87:32:87:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,66:33:66:1.00:2	0/1:21,14:33:35:0.400:2
chr1	1254841	rs10907179	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,59:31:59:1.00:2	0/1:1,86:32:87:0.989:2	0/1:0,66:31:66:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,76:31:76:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,41:32:41:1.00:2	0/1:26,21:32:47:0.447:2
chr1	1257286	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,13:15:166:0.079:2	./.	./.	./.	./.
chr1	1257289	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,10:17:171:0.059:2	./.	./.	./.	./.
chr1	1262635	rs142934629	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:33:7:0.571:2
chr1	1262966	rs307349	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:33:4:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,7:31:7:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.
chr1	1263144	rs307350	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:31:11:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,11:30:11:1.00:2	0/1:4,8:32:12:0.667:2
chr1	1266738	rs76755863	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,31:30:79:0.392:2	0/1:35,25:31:60:0.417:2	./.	./.	0/1:87,101:30:188:0.537:2	./.	./.	./.	./.	./.	./.
chr1	1266740	rs141430443	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,31:32:81:0.383:2	0/1:36,25:32:61:0.410:2	./.	./.	0/1:88,101:32:189:0.534:2	./.	./.	./.	./.	./.	./.
chr1	1269554	rs307377	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:1,34:31:35:0.971:2	0/1:0,20:32:20:1.00:2	0/1:1,122:31:123:0.992:2	0/1:0,99:31:99:1.00:2	0/1:1,105:30:106:0.991:2	0/1:2,82:30:84:0.976:2	0/1:0,104:31:104:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,85:31:85:1.00:2	0/1:33,33:31:66:0.500:2
chr1	1269796	rs150371886	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr1	1269802	rs148758835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.
chr1	1275652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.
chr1	1277533	rs307362	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:26:22:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,28:27:28:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,23:27:23:1.00:2	0/1:0,11:27:11:1.00:2
chr1	1288655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2
chr1	1290156	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.
chr1	1310074	rs2765035	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,55:31:55:1.00:2	0/1:28,33:30:61:0.541:2
chr1	1322672	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:31:51:0.353:2
chr1	1325655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,6:32:115:0.052:2	./.	./.	./.	./.	./.	./.
chr1	1334005	rs370863686	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.
chr1	1334475	rs17851391	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:33:99:0.500:2	./.	./.
chr1	1342394	rs11548045	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,35:30:77:0.455:2	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.
chr1	1354515	rs904589	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,37:30:77:0.481:2
chr1	1354594	rs3766165	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:30:9:0.333:2
chr1	1354756	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,22:30:31:0.710:2	./.	./.	./.	./.	./.	./.	./.
chr1	1361530	rs144957058	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	./.	./.	0/1:1,86:29:87:0.989:2	./.	./.	0/1:31,19:30:50:0.380:2	./.
chr1	1375810	rs4590	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	./.	./.	./.
chr1	1386089	rs149262155	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,49:32:123:0.402:2
chr1	1387432	rs112072883	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:33:190:0.037:2	./.	./.	0/1:170,5:33:175:0.029:2
chr1	1387764	rs9793256	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,39:30:42:0.929:2	./.	0/1:90,94:31:184:0.511:2	./.	0/1:111,76:31:187:0.406:2	./.	./.	./.	0/1:88,100:31:188:0.532:2
chr1	1390875	rs1781147	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,11:31:12:0.917:2	./.	0/1:75,61:30:136:0.449:2	./.	0/1:53,80:30:133:0.602:2	./.	./.	./.	0/1:45,38:30:83:0.458:2
chr1	1391655	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,62:30:190:0.328:2	./.	./.
chr1	1391672	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:30:23:0.261:2	./.	./.	./.	0/1:141,42:30:183:0.230:2	./.	./.	./.	./.
chr1	1396244	rs150798221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,46:30:81:0.575:2
chr1	1403776	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.
chr1	1414071	rs200314338	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,45:31:147:0.306:2	./.	./.	./.	0/1:84,46:31:130:0.354:2
chr1	1416236	rs192308564	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,74:31:184:0.402:2
chr1	1418004	rs819972	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	0/1:60,71:32:132:0.542:2	./.	./.	./.	0/1:67,72:32:140:0.518:2
chr1	1420422	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,6:27:187:0.032:2	./.	./.	./.	./.	./.
chr1	1420527	rs1781156	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:30:17:0.176:2	./.	./.	./.	0/1:40,5:30:45:0.111:2	./.	./.	./.	0/1:17,22:31:39:0.564:2
chr1	1421531	rs819976	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	0/1:83,71:31:154:0.461:2	0/1:181,11:32:193:0.057:2	./.	./.	0/1:59,41:32:100:0.410:2
chr1	1421579	rs142840431	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,27:29:77:0.351:2
chr1	1421974	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,23:29:186:0.124:2	./.	./.
chr1	1421991	rs860213	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,19:31:57:0.333:2	./.	./.	./.	0/1:135,59:32:194:0.304:2	./.	./.	./.	./.
chr1	1423267	rs819977	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	0/1:35,36:27:71:0.507:2	./.	./.	./.	0/1:23,30:27:53:0.566:2
chr1	1425700	rs819980	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	0/1:80,75:28:155:0.484:2	./.	./.	./.	0/1:49,46:29:95:0.484:2
chr1	1425970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,37:32:131:0.282:2	./.	./.	./.	./.	./.	./.
chr1	1431048	rs201429000	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,6:27:68:0.088:2	./.	./.	./.	./.	./.
chr1	1431060	rs9792997	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,4:32:59:0.068:2	0/1:22,4:31:26:0.154:2	./.	0/1:60,5:32:65:0.077:2	./.	0/1:68,7:30:75:0.093:2	./.	./.	./.	./.	./.
chr1	1431105	rs199599542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,7:30:65:0.108:2	./.	./.	./.
chr1	1431165	rs9792879	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,19:30:58:0.328:2	./.	0/1:33,18:29:51:0.353:2	./.	0/1:35,19:31:54:0.352:2	./.	0/1:29,22:27:51:0.431:2
chr1	1431166	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:32:60:0.100:2	./.	./.	./.	./.	./.
chr1	1451380	rs9439458	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,75:32:179:0.419:2	0/1:60,62:32:122:0.508:2	0/1:20,19:34:39:0.487:2	0/1:109,83:32:192:0.432:2	./.	./.	0/1:100,90:33:190:0.474:2	./.	./.	./.	0/1:79,111:32:190:0.584:2
chr1	1451384	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,6:28:190:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	1452738	rs35860586	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,56:31:173:0.324:2	./.	./.	./.	0/1:109,16:31:125:0.128:2
chr1	1455577	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:30:24:0.208:2	./.	./.
chr1	1455652	rs2767471	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,12:28:36:0.333:2	0/1:21,4:27:25:0.160:2	0/1:12,4:31:16:0.250:2	./.	0/1:54,33:30:88:0.379:2	./.	0/1:36,13:30:49:0.265:2	0/1:69,8:29:77:0.104:2	0/1:58,13:27:71:0.183:2	0/1:37,24:30:61:0.393:2	0/1:17,11:30:28:0.393:2
chr1	1458150	rs1135025	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,20:29:32:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1459703	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,12:26:192:0.063:2	./.	./.
chr1	1459720	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	0/1:180,8:28:188:0.043:2	./.	./.	./.	./.
chr1	1460671	rs149995099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,35:32:53:0.660:2	./.	./.	./.	./.	./.
chr1	1464630	rs374773488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,8:33:151:0.053:2	./.	./.	./.	./.	./.	./.
chr1	1469399	rs41285842	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,45:30:108:0.421:2	0/1:12,25:29:37:0.676:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1479324	rs144883680	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,35:30:59:0.593:2	./.	./.	./.	./.	./.
chr1	1479333	rs7533	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:30,23:29:53:0.434:2	./.	0/1:3,30:30:33:0.909:2	./.	./.	0/1:0,35:30:35:1.00:2	0/1:30,19:30:49:0.388:2
chr1	1480226	rs116703397	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	0/1:38,35:31:73:0.479:2	./.	./.	./.	0/1:37,37:30:74:0.500:2
chr1	1551927	rs7418389	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,39:33:39:1.00:2	0/1:8,8:32:16:0.500:2	0/1:6,113:32:119:0.950:2	0/1:86,82:31:168:0.488:2	0/1:0,110:31:110:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,107:32:107:1.00:2	0/1:44,43:33:87:0.494:2	0/1:0,71:32:71:1.00:2	0/1:36,33:33:69:0.478:2
chr1	1558792	rs12755088	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:27:15:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,19:26:19:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,7:26:7:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,17:26:17:1.00:2
chr1	1562536	rs11544452	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1571791	rs201006058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,5:30:97:0.052:2	0/1:136,4:30:140:0.029:2	./.	./.	./.
chr1	1577141	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.	./.	./.
chr1	1577180	rs150540375	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,31:32:124:0.250:2	0/1:103,28:32:131:0.214:2	0/1:135,26:32:161:0.161:2	0/1:91,29:33:120:0.242:2	0/1:96,37:32:134:0.278:2	0/1:87,32:33:119:0.269:2	0/1:72,22:33:94:0.234:2	./.
chr1	1599812	rs12729295	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:32:24:0.333:2	./.	0/1:171,23:30:194:0.119:2	0/1:178,16:29:194:0.082:2	0/1:168,26:32:194:0.134:2	0/1:162,25:31:188:0.134:2	0/1:168,24:33:192:0.125:2	0/1:154,34:32:188:0.181:2	./.
chr1	1599888	rs2072923	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,29:28:133:0.220:2	0/1:62,19:29:81:0.235:2	./.	0/1:119,38:28:158:0.242:2	0/1:126,25:29:151:0.166:2	0/1:150,41:28:193:0.215:2	0/1:142,16:30:159:0.101:2	0/1:138,39:30:178:0.220:2	0/1:122,26:28:148:0.176:2	0/1:108,31:27:139:0.223:2	0/1:125,28:28:154:0.183:2
chr1	1606981	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,29:31:187:0.155:2	./.
chr1	1607873	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:51,21:31:72:0.292:2	0/1:48,5:32:53:0.094:2	./.	./.	./.	./.	./.	./.	./.	0/1:66,20:31:86:0.233:2	./.
chr1	1608100	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,27:30:55:0.491:2	0/1:14,15:32:29:0.517:2	0/1:4,5:30:9:0.556:2	0/1:65,24:32:89:0.270:2	0/1:60,17:29:77:0.221:2	0/1:42,36:30:78:0.462:2	0/1:25,49:31:74:0.662:2	0/1:45,40:30:85:0.471:2	0/1:33,27:31:60:0.450:2	0/1:31,35:31:66:0.530:2	0/1:18,41:31:59:0.695:2
chr1	1635004	rs874516	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,20:32:72:0.278:2	0/1:26,34:32:60:0.567:2	0/1:67,54:33:121:0.446:2	0/1:36,41:32:77:0.532:2	0/1:49,45:32:94:0.479:2	0/1:48,57:33:105:0.543:2	0/1:53,29:32:82:0.354:2	./.
chr1	1635749	rs55880629	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,49:31:147:0.336:2	0/1:83,49:31:132:0.371:2	0/1:139,45:30:184:0.245:2	0/1:93,54:29:147:0.367:2	0/1:80,64:31:145:0.444:2	0/1:94,46:32:140:0.329:2	0/1:107,50:30:157:0.318:2	./.
chr1	1636044	rs1059822	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:175,5:32:180:0.028:2	./.	0/1:152,41:31:193:0.212:2	0/1:152,40:32:192:0.208:2	0/1:165,33:31:198:0.167:2	0/1:167,30:31:197:0.152:2	0/1:147,48:31:195:0.246:2	0/1:143,46:32:189:0.243:2	0/1:142,55:32:197:0.279:2	./.
chr1	1640390	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,32:32:150:0.213:2	0/1:86,28:32:114:0.246:2	0/1:99,28:32:127:0.220:2	0/1:99,25:32:124:0.202:2	0/1:94,19:33:113:0.168:2	0/1:84,24:32:108:0.222:2	0/1:86,18:32:105:0.173:2	./.
chr1	1643740	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1647814	rs72901775	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,57:32:179:0.320:2	0/1:74,66:32:140:0.471:2	0/1:20,15:32:35:0.429:2	0/1:113,72:32:185:0.389:2	0/1:113,69:31:182:0.379:2	0/1:141,40:32:181:0.221:2	0/1:128,58:31:186:0.312:2	0/1:121,63:32:184:0.342:2	0/1:111,67:32:178:0.376:2	0/1:127,54:31:181:0.298:2	0/1:72,103:32:175:0.589:2
chr1	1647871	rs72909014	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,67:33:176:0.381:2	0/1:85,84:32:169:0.497:2	0/1:23,21:31:44:0.477:2	0/1:98,64:32:162:0.395:2	0/1:95,67:33:163:0.414:2	0/1:121,73:33:194:0.376:2	0/1:121,50:33:171:0.292:2	0/1:108,54:32:162:0.333:2	0/1:101,61:34:162:0.377:2	0/1:93,63:33:156:0.404:2	0/1:58,112:32:170:0.659:2
chr1	1647893	rs144636354	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,4:34:149:0.027:2	./.	./.	0/1:143,6:34:149:0.040:2	0/1:131,5:33:136:0.037:2	./.	./.	./.	0/1:168,4:35:172:0.023:2	0/1:156,8:32:164:0.049:2	0/1:130,6:32:136:0.044:2
chr1	1650787	rs1137003	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,17:29:61:0.279:2	0/1:32,7:32:39:0.179:2	./.	0/1:47,15:30:62:0.242:2	0/1:42,14:27:56:0.250:2	0/1:59,16:28:75:0.213:2	0/1:41,24:28:65:0.369:2	0/1:54,28:29:82:0.341:2	0/1:64,27:31:91:0.297:2	0/1:50,24:29:74:0.324:2	0/1:40,22:29:62:0.355:2
chr1	1650797	rs1059830	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,17:28:66:0.258:2	0/1:35,5:27:40:0.125:2	./.	0/1:50,15:29:65:0.231:2	0/1:41,13:28:54:0.241:2	0/1:59,15:30:74:0.203:2	0/1:46,14:31:60:0.233:2	0/1:57,21:30:78:0.269:2	0/1:63,28:27:91:0.308:2	0/1:54,18:29:73:0.250:2	0/1:41,28:28:69:0.406:2
chr1	1650801	rs1137004	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,21:32:70:0.300:2	0/1:34,6:34:40:0.150:2	./.	0/1:52,14:33:66:0.212:2	0/1:37,11:32:48:0.229:2	0/1:62,13:33:75:0.173:2	0/1:45,12:32:57:0.211:2	0/1:60,21:32:81:0.259:2	0/1:59,29:33:88:0.330:2	0/1:58,20:32:78:0.256:2	0/1:44,29:32:73:0.397:2
chr1	1650807	rs1137005	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,50:32:77:0.649:2	0/1:7,34:32:41:0.829:2	0/1:0,10:34:10:1.00:2	0/1:22,50:33:74:0.694:2	0/1:40,14:31:54:0.259:2	0/1:36,40:33:76:0.526:2	0/1:17,36:33:53:0.679:2	0/1:30,57:33:87:0.655:2	0/1:34,58:34:93:0.630:2	0/1:23,52:33:75:0.693:2	0/1:39,40:33:79:0.506:2
chr1	1650832	rs72909030	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,28:33:94:0.298:2	0/1:46,6:33:52:0.115:2	0/1:8,3:32:11:0.273:2	0/1:64,34:33:98:0.347:2	0/1:48,22:31:70:0.314:2	0/1:68,24:31:92:0.261:2	0/1:47,25:33:72:0.347:2	0/1:71,43:32:114:0.377:2	0/1:62,43:33:105:0.410:2	0/1:72,30:31:102:0.294:2	0/1:50,56:31:106:0.528:2
chr1	1650845	rs1059831	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,58:32:106:0.547:2	0/1:13,52:32:65:0.800:2	0/1:5,11:31:16:0.688:2	0/1:49,63:32:112:0.563:2	0/1:53,27:32:80:0.338:2	0/1:69,39:31:109:0.361:2	0/1:31,46:32:77:0.597:2	0/1:61,69:32:130:0.531:2	0/1:58,61:32:119:0.513:2	0/1:44,73:32:117:0.624:2	0/1:76,48:32:124:0.387:2
chr1	1654007	rs199558549	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,21:33:31:0.677:2	0/1:2,13:33:15:0.867:2	0/1:0,3:31:3:1.00:2	0/1:2,17:32:19:0.895:2	0/1:158,4:32:162:0.025:2	./.	0/1:12,16:32:28:0.571:2	0/1:11,16:32:27:0.593:2	0/1:5,14:32:19:0.737:2	0/1:10,6:33:16:0.375:2	0/1:5,18:31:23:0.783:2
chr1	1654013	rs74045997	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,2:36:6:0.333:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,3:36:3:1.00:2	./.	./.	0/1:7,5:32:12:0.417:2	0/1:3,6:31:9:0.667:2	./.	0/1:4,5:33:9:0.556:2	0/1:1,4:36:5:0.800:2
chr1	1654038	rs61777494	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,17:31:33:0.515:2	0/1:6,15:31:21:0.714:2	./.	0/1:15,13:29:28:0.464:2	0/1:148,5:30:154:0.033:2	0/1:169,14:30:183:0.077:2	0/1:20,12:30:32:0.375:2	0/1:27,16:30:43:0.372:2	0/1:20,5:31:25:0.200:2	0/1:19,19:29:38:0.500:2	0/1:19,12:30:31:0.387:2
chr1	1654058	rs61777495	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,38:31:56:0.679:2	0/1:6,26:31:32:0.813:2	0/1:1,2:32:3:0.667:2	0/1:16,23:30:39:0.590:2	0/1:137,11:30:149:0.074:2	0/1:158,24:30:182:0.132:2	0/1:20,23:31:43:0.535:2	0/1:28,31:31:59:0.525:2	0/1:18,17:32:35:0.486:2	0/1:18,31:30:49:0.633:2	0/1:19,22:31:41:0.537:2
chr1	1654064	rs200615789	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,38:29:56:0.679:2	0/1:6,26:30:32:0.813:2	./.	0/1:18,24:29:42:0.571:2	0/1:139,11:29:150:0.073:2	0/1:156,24:29:180:0.133:2	0/1:20,23:29:43:0.535:2	0/1:27,31:29:58:0.534:2	0/1:19,17:30:36:0.472:2	0/1:19,32:29:51:0.627:2	0/1:20,22:30:42:0.524:2
chr1	1663900	rs138133260	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,45:31:98:0.459:2	./.	./.	./.	./.
chr1	1663938	rs143259268	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,48:31:111:0.432:2	./.
chr1	1663960	rs147265331	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,63:30:176:0.358:2	./.	./.	./.	./.	./.
chr1	1666175	rs61777509	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,21:31:35:0.600:2	./.	0/1:154,41:31:195:0.210:2	0/1:156,31:32:187:0.166:2	0/1:133,61:32:194:0.314:2	0/1:146,51:31:197:0.259:2	0/1:131,60:33:191:0.314:2	0/1:127,60:31:187:0.321:2	./.
chr1	1666251	rs77655487	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,39:30:138:0.285:2	0/1:57,38:31:96:0.400:2	0/1:25,4:32:29:0.138:2	0/1:122,30:30:155:0.197:2	0/1:177,9:30:186:0.048:2	0/1:167,23:29:190:0.121:2	0/1:127,22:31:149:0.148:2	0/1:107,57:31:164:0.348:2	0/1:117,32:30:149:0.215:2	0/1:101,53:31:154:0.344:2	0/1:49,52:30:101:0.515:2
chr1	1669839	rs372880108	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,35:32:188:0.186:2	./.
chr1	1670432	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:186,4:32:190:0.021:2	0/1:189,6:32:195:0.031:2	./.	0/1:175,17:32:192:0.089:2	./.	0/1:189,6:31:195:0.031:2	0/1:193,5:32:198:0.025:2	0/1:184,9:33:193:0.047:2	./.	./.	./.
chr1	1670731	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:60,11:32:71:0.155:2	0/1:35,12:32:47:0.255:2	./.	./.	./.	./.	./.	./.	./.	0/1:55,13:33:68:0.191:2	./.
chr1	1670958	rs146637450	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,24:31:61:0.393:2	0/1:24,19:31:43:0.442:2	0/1:3,4:31:7:0.571:2	0/1:61,21:31:82:0.256:2	0/1:57,21:30:78:0.269:2	0/1:68,33:30:101:0.327:2	0/1:17,57:31:74:0.770:2	0/1:51,42:30:93:0.452:2	0/1:53,29:30:82:0.354:2	0/1:28,24:31:52:0.462:2	0/1:22,32:31:54:0.593:2
chr1	1684472	rs7407	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,79:30:83:0.963:2	0/1:4,69:31:73:0.945:2	0/1:0,12:30:12:1.00:2	0/1:85,57:30:142:0.401:2	./.	./.	0/1:75,73:31:148:0.493:2	0/1:1,132:30:134:0.992:2	0/1:78,59:31:137:0.431:2	0/1:0,103:29:103:1.00:2	0/1:1,133:30:135:0.993:2
chr1	1686040	rs4751	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,44:32:99:0.444:2	0/1:78,53:31:131:0.405:2	0/1:70,50:32:120:0.417:2	0/1:73,70:32:143:0.490:2	./.	0/1:61,52:33:113:0.460:2	./.	./.
chr1	1686081	rs75816936	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:31:13:0.769:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1737895	rs77354509	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,20:33:52:0.385:2	0/1:15,8:33:23:0.348:2	./.	./.	./.	./.	0/1:28,10:33:38:0.263:2	./.	./.	0/1:27,15:32:42:0.357:2	./.
chr1	1737900	rs17363334	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,20:32:55:0.364:2	0/1:15,9:33:24:0.375:2	0/1:2,2:33:4:0.500:2	./.	./.	./.	0/1:29,13:31:42:0.310:2	./.	./.	0/1:27,15:30:42:0.357:2	./.
chr1	1846765	rs2247560	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,38:33:39:0.974:2	0/1:1,18:33:19:0.947:2	0/1:0,7:32:7:1.00:2	0/1:22,41:32:63:0.651:2	./.	0/1:10,34:32:44:0.773:2	0/1:20,34:33:54:0.630:2	0/1:0,58:32:58:1.00:2	0/1:14,23:32:37:0.622:2	0/1:0,38:33:38:1.00:2	0/1:0,54:32:54:1.00:2
chr1	1847123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.	./.	./.
chr1	1849529	rs28640257	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,82:30:85:0.965:2	0/1:0,45:30:45:1.00:2	0/1:0,15:30:15:1.00:2	0/1:72,54:30:126:0.429:2	./.	0/1:56,71:30:127:0.559:2	0/1:64,55:30:119:0.462:2	0/1:2,109:30:111:0.982:2	0/1:59,65:32:124:0.524:2	0/1:1,103:30:104:0.990:2	0/1:1,121:29:122:0.992:2
chr1	1849923	rs72634869	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,93:30:179:0.520:2	./.	./.	./.	0/1:123,71:30:194:0.366:2	./.	./.	0/1:76,77:30:153:0.503:2
chr1	1854109	rs2803348	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,2:30:2:1.00:2	0/1:25,38:33:63:0.603:2	./.	0/1:47,33:32:80:0.413:2	0/1:18,40:33:58:0.690:2	0/1:3,52:33:55:0.945:2	0/1:26,34:34:60:0.567:2	0/1:0,45:33:45:1.00:2	0/1:0,55:32:55:1.00:2
chr1	1859131	rs4648734	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,52:31:88:0.591:2	./.	./.	0/1:59,35:30:94:0.372:2	./.	0/1:34,34:31:68:0.500:2	./.	./.
chr1	1887019	rs28548017	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,8:32:19:0.421:2	0/1:10,3:31:13:0.231:2	0/1:0,2:32:2:1.00:2	0/1:0,16:33:16:1.00:2	./.	0/1:16,13:33:29:0.448:2	0/1:0,5:32:5:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,16:34:16:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,32:32:32:1.00:2
chr1	1887245	rs28575980	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,13:32:45:0.289:2	./.	./.	0/1:20,24:31:44:0.545:2	./.	0/1:19,18:33:37:0.486:2	./.	./.
chr1	1888193	rs3820011	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,64:32:136:0.471:2	./.	./.	0/1:58,68:33:126:0.540:2	./.	0/1:73,41:33:114:0.360:2	./.	./.
chr1	1891477	rs2748972	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,34:33:93:0.366:2	./.	./.	./.	./.	./.	./.
chr1	1896440	rs16824585	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	0/1:32,40:30:72:0.556:2	0/1:37,29:32:66:0.439:2	0/1:112,4:34:116:0.034:2	0/1:43,33:32:76:0.434:2	0/1:28,25:32:53:0.472:2	./.
chr1	1900186	rs35269416	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:82,73:32:155:0.471:2	0/1:39,50:32:89:0.562:2	./.	0/1:70,100:32:170:0.588:2	0/1:88,31:30:119:0.261:2	./.	./.	0/1:87,91:31:178:0.511:2	./.	./.	0/1:88,82:32:170:0.482:2
chr1	1900232	rs16824588	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,62:29:125:0.496:2	0/1:31,32:28:63:0.508:2	0/1:4,13:29:17:0.765:2	0/1:61,69:28:130:0.531:2	0/1:65,24:29:89:0.270:2	0/1:107,54:28:161:0.335:2	0/1:66,51:29:117:0.436:2	0/1:68,76:29:144:0.528:2	0/1:99,63:29:162:0.389:2	0/1:77,48:29:125:0.384:2	0/1:79,57:28:136:0.419:2
chr1	1902129	rs200056196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,76:31:156:0.487:2	./.	./.	./.	./.	./.	./.
chr1	1916890	rs3795280	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,86:29:162:0.531:2	0/1:50,53:29:103:0.515:2	0/1:60,55:30:115:0.478:2	./.	0/1:44,58:30:102:0.569:2	./.	./.
chr1	1957037	rs2229110	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,155:30:157:0.994:2	0/1:1,109:31:110:0.991:2	0/1:18,16:33:34:0.471:2	0/1:1,164:32:166:0.994:2	0/1:0,170:32:170:1.00:2	0/1:1,180:33:181:0.994:2	0/1:100,78:32:178:0.438:2	0/1:0,165:32:165:1.00:2	0/1:2,171:33:174:0.988:2	0/1:94,84:33:178:0.472:2	0/1:86,78:31:164:0.476:2
chr1	1960674	rs28408173	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,57:30:100:0.570:2	./.	./.	0/1:30,28:31:58:0.483:2	0/1:31,46:30:77:0.597:2
chr1	1987993	rs12184	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,33:28:87:0.379:2	0/1:27,22:28:49:0.449:2	0/1:8,14:29:22:0.636:2	./.	0/1:1,135:29:136:0.993:2	0/1:82,74:29:156:0.474:2	./.	0/1:92,52:29:144:0.361:2	0/1:76,53:29:129:0.411:2	./.	0/1:68,44:28:112:0.393:2
chr1	1991014	rs1878745	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,29:29:81:0.358:2	0/1:45,28:29:73:0.384:2	./.	./.	./.	0/1:78,67:29:145:0.462:2	./.	0/1:122,75:29:197:0.381:2	./.	./.	0/1:83,64:28:147:0.435:2
chr1	2005740	rs2459986	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:25:11:1.00:2	0/1:0,12:28:12:1.00:2	./.	0/1:20,13:28:33:0.394:2	0/1:0,28:26:28:1.00:2	0/1:0,19:27:19:1.00:2	0/1:13,8:29:21:0.381:2	0/1:0,23:26:23:1.00:2	0/1:0,39:29:39:1.00:2	0/1:15,9:29:24:0.375:2	0/1:0,17:26:17:1.00:2
chr1	2125172	rs1058411	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.
chr1	2160661	rs149898447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,82:31:160:0.513:2	./.	./.	./.	./.
chr1	2290143	rs34587196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,63:32:102:0.618:2	./.	./.	./.	./.	./.	./.
chr1	2316421	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr1	2337194	rs3795270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,11:33:15:0.733:2	./.
chr1	2337277	rs11586985	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2
chr1	2340198	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr1	2340200	rs2494598	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:30:50:0.980:2	0/1:0,35:30:35:1.00:2	0/1:3,6:26:9:0.667:2	0/1:1,73:30:74:0.986:2	0/1:1,112:30:113:0.991:2	0/1:0,89:29:89:1.00:2	0/1:1,105:30:106:0.991:2	0/1:0,87:31:88:1.00:2	0/1:0,46:32:46:1.00:2	0/1:27,18:27:45:0.400:2	0/1:28,15:31:43:0.349:2
chr1	2340212	rs1143016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,84:31:135:0.622:2	./.	./.	./.	./.
chr1	2418384	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.
chr1	2418625	rs7512269	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,12:31:26:0.462:2	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	0/1:27,28:29:55:0.509:2	./.	./.	./.
chr1	2418764	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:33:95:0.463:2	./.	./.
chr1	2426313	rs79885852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,20:31:54:0.370:2	./.	./.	./.	./.
chr1	2429006	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	2430617	rs2296442	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,105:32:106:0.991:2	0/1:0,63:32:63:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,134:32:134:1.00:2	./.	0/1:85,65:31:150:0.433:2	0/1:0,143:32:143:1.00:2	0/1:2,136:32:138:0.986:2	0/1:82,61:33:143:0.427:2	./.	0/1:1,109:31:110:0.991:2
chr1	2433894	rs55874156	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr1	2433900	rs12736998	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,8:32:8:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,5:33:5:1.00:2	./.	0/1:2,4:32:6:0.667:2	0/1:0,2:32:2:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,4:33:4:1.00:2
chr1	2434171	rs181061314	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	0/1:3,8:30:12:0.727:2	./.	./.	./.	./.	./.
chr1	2435738	rs114371513	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:31:18:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr1	2436256	rs138038983	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:30:25:0.600:2	./.	./.
chr1	2436303	rs79405490	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	2436391	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	2441358	rs2494620	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:30:91:0.396:2	0/1:39,19:30:58:0.328:2	./.
chr1	2441573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:32:155:0.032:2	./.	./.	./.	./.	./.
chr1	2444414	rs7535528	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,39:32:51:0.765:2	0/1:9,24:32:33:0.727:2	0/1:0,15:31:15:1.00:2	0/1:19,23:30:42:0.548:2	./.	0/1:17,19:30:36:0.528:2	0/1:0,33:31:33:1.00:2	0/1:26,47:30:73:0.644:2	0/1:16,28:32:44:0.636:2	./.	0/1:8,15:31:23:0.652:2
chr1	2445877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2
chr1	2452569	rs2985862	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,100:32:100:1.00:2	./.	0/1:37,54:32:91:0.593:2	0/1:1,80:32:81:0.988:2	0/1:1,127:32:128:0.992:2	0/1:0,75:34:75:1.00:2	0/1:41,43:33:84:0.512:2	0/1:1,88:32:89:0.989:2
chr1	2488112	rs11573967	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,9:31:32:0.281:2	./.	./.	./.	./.	./.	./.
chr1	2488153	rs4870	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,22:33:56:0.393:2	0/1:0,34:31:34:1.00:2	0/1:0,50:31:50:1.00:2	./.	./.	0/1:31,18:34:49:0.367:2	0/1:34,24:31:58:0.414:2	0/1:22,26:33:48:0.542:2
chr1	2489200	rs2234158	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,63:32:138:0.457:2	./.	./.	./.	./.
chr1	2491305	rs2234162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,64:30:90:0.711:2	./.	./.	./.	./.
chr1	2494330	rs2234167	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,25:29:61:0.410:2	0/1:0,71:30:71:1.00:2	0/1:0,52:30:52:1.00:2	./.	./.	./.	./.	0/1:12,21:31:33:0.636:2
chr1	2494663	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr1	2526746	rs3748816	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:29:102:0.471:2	./.	0/1:42,38:28:80:0.475:2	0/1:40,40:28:80:0.500:2	./.
chr1	2535613	rs4648562	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:30:82:0.469:2	0/1:0,63:31:63:1.00:2	./.
chr1	2535648	rs199706451	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,89:32:191:0.466:2	./.	./.	./.
chr1	2541269	rs10797440	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	0/1:95,53:29:148:0.358:2	./.	0/1:53,54:31:107:0.505:2	0/1:0,86:30:86:1.00:2	./.
chr1	2560882	rs4648658	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:0,5:30:5:1.00:2	0/1:1,20:32:21:0.952:2	0/1:7,3:33:10:0.300:2	0/1:0,41:31:41:1.00:2	0/1:15,11:32:26:0.423:2	./.	0/1:0,7:30:7:1.00:2
chr1	2560903	rs4648659	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,11:29:11:1.00:2	./.	0/1:0,21:29:21:1.00:2	0/1:0,4:28:4:1.00:2	0/1:1,23:28:24:0.958:2	0/1:2,8:29:10:0.800:2	0/1:0,42:28:42:1.00:2	0/1:18,12:30:30:0.400:2	./.	0/1:0,7:31:7:1.00:2
chr1	2704112	rs56328393	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:29:49:0.367:2	./.	./.	./.	./.
chr1	2704247	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:27:100:0.050:2	./.
chr1	2938265	rs4576609	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:29:28:0.607:2	./.	./.	0/1:13,9:31:22:0.409:2	0/1:18,18:31:36:0.500:2	0/1:18,10:31:28:0.357:2	./.	0/1:23,23:32:46:0.500:2
chr1	2938697	rs3795262	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:29:17:0.588:2	0/1:71,59:29:130:0.454:2	./.	./.	0/1:66,44:29:110:0.400:2	0/1:106,46:28:152:0.303:2	0/1:61,44:31:105:0.419:2	./.	0/1:0,69:30:69:1.00:2
chr1	2938989	rs3795263	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,22:32:44:0.500:2	0/1:5,18:31:23:0.783:2	0/1:5,4:31:9:0.444:2	./.	0/1:0,35:31:35:1.00:2	0/1:25,29:32:54:0.537:2	0/1:19,22:31:41:0.537:2	./.	0/1:20,17:33:37:0.459:2	0/1:0,30:33:30:1.00:2	./.
chr1	2939138	rs35852409	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:29:26:0.346:2
chr1	2985812	rs200480152	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,6:19:45:0.133:2
chr1	2985885	rs7413494	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.
chr1	3301721	rs2282198	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,53:32:97:0.546:2	./.	0/1:60,51:32:111:0.459:2	./.	./.	0/1:46,40:34:86:0.465:2	./.	0/1:37,32:33:70:0.464:2
chr1	3322181	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.	./.	./.
chr1	3327964	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr1	3328358	rs870124	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,5:31:5:1.00:2	0/1:3,2:34:5:0.400:2	0/1:8,5:31:13:0.385:2	0/1:0,8:33:8:1.00:2	./.	0/1:0,7:31:7:1.00:2
chr1	3328659	rs2493292	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,25:32:26:0.962:2	0/1:0,8:30:8:1.00:2	./.	./.	0/1:14,26:30:40:0.650:2	./.	./.	./.	0/1:19,28:31:47:0.596:2	./.	./.
chr1	3329360	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3380057	rs3806164	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,53:31:96:0.552:2	./.	./.	./.	./.	./.	./.	./.
chr1	3383881	rs371036704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:30:12:0.667:2
chr1	3383898	rs6424078	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,14:31:15:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,10:31:10:1.00:2
chr1	3385487	rs193254384	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.
chr1	3388269	rs77768688	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:23,27:31:50:0.540:2	./.	0/1:29,28:32:57:0.491:2	./.	./.	./.	./.
chr1	3389727	rs2185639	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:29:96:0.990:2	0/1:0,44:30:45:1.00:2	0/1:15,9:27:24:0.375:2	0/1:86,70:28:157:0.449:2	0/1:3,142:28:145:0.979:2	0/1:0,148:29:148:1.00:2	0/1:0,164:28:165:1.00:2	0/1:2,172:29:174:0.989:2	0/1:3,135:29:138:0.978:2	0/1:0,92:29:92:1.00:2	0/1:58,42:29:100:0.420:2
chr1	3394441	rs17854723	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:31:40:0.475:2
chr1	3394456	rs4638054	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,54:31:55:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,63:31:63:1.00:2
chr1	3395039	rs10797395	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,173:31:174:0.994:2	0/1:1,149:31:150:0.993:2	0/1:29,28:29:57:0.491:2	0/1:85,104:33:189:0.550:2	0/1:1,191:31:192:0.995:2	0/1:1,195:31:196:0.995:2	0/1:5,185:31:190:0.974:2	0/1:0,193:31:193:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,179:31:179:1.00:2	0/1:82,93:31:176:0.531:2
chr1	3397062	rs56309807	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3407101	rs12404355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,30:30:104:0.288:2	./.	./.	./.	./.	./.
chr1	3410410	rs61910697	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,38:31:108:0.352:2	./.	./.	./.	./.	./.	./.	./.
chr1	3410973	rs12075570	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	./.	./.	./.	./.	./.
chr1	3413868	rs4648506	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.
chr1	3416449	rs7553399	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:4,6:32:10:0.600:2	0/1:0,8:30:8:1.00:2	0/1:0,8:30:8:1.00:2	0/1:5,5:33:10:0.500:2	0/1:0,10:31:10:1.00:2	0/1:0,16:33:16:1.00:2	0/1:4,9:33:13:0.692:2	0/1:5,3:34:8:0.375:2
chr1	3417211	rs61742846	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,19:31:27:0.704:2	./.	./.	./.	./.	./.	./.	./.
chr1	3418391	rs4648508	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,60:30:63:0.952:2	0/1:0,43:30:43:1.00:2	./.	./.	0/1:0,59:30:59:1.00:2	./.	./.	0/1:31,46:30:77:0.597:2	0/1:18,40:31:58:0.690:2	0/1:22,24:31:46:0.522:2	0/1:7,33:29:40:0.825:2
chr1	3421897	rs2821008	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,17:31:39:0.436:2	0/1:2,8:30:10:0.800:2	./.	./.	./.	0/1:14,16:30:30:0.533:2	./.	./.	0/1:14,4:27:18:0.222:2	./.	./.
chr1	3422057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:31:25:0.120:2	./.	./.	./.	./.	./.
chr1	3424388	rs947345	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:32:16:0.438:2	0/1:53,36:32:89:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr1	3425183	rs61735125	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,70:31:127:0.551:2	0/1:42,33:31:75:0.440:2	./.	./.	./.	./.	./.	./.	0/1:103,87:31:190:0.458:2	./.	./.
chr1	3427351	rs2821000	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:29:31:0.355:2	./.	./.	./.	./.	./.
chr1	3428160	rs2820999	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,14:32:56:0.250:2	0/1:16,16:31:32:0.500:2	0/1:2,6:33:8:0.750:2	0/1:63,41:31:104:0.394:2	./.	0/1:59,33:31:92:0.359:2	0/1:53,25:31:78:0.321:2	0/1:46,31:33:77:0.403:2	0/1:30,36:33:66:0.545:2	0/1:27,26:32:53:0.491:2	./.
chr1	3428608	rs11585362	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,15:31:27:0.556:2	0/1:77,66:31:143:0.462:2	./.	./.	0/1:64,66:30:130:0.508:2	0/1:68,84:32:152:0.553:2	./.	0/1:57,74:32:131:0.565:2	./.
chr1	3447666	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3447689	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3496479	rs2794340	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:28:121:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,27:30:27:1.00:2	0/1:116,58:28:174:0.333:2	0/1:3,136:29:139:0.978:2	0/1:0,179:30:179:1.00:2	0/1:2,183:30:185:0.989:2	0/1:0,175:29:176:1.00:2	0/1:1,180:30:181:0.994:2	0/1:117,59:29:176:0.335:2	0/1:0,111:29:111:1.00:2
chr1	3511934	rs7513275	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:26:22:0.500:2	./.	0/1:16,22:27:38:0.579:2	0/1:17,9:24:26:0.346:2	./.	./.	0/1:6,10:24:16:0.625:2	0/1:17,11:26:28:0.393:2
chr1	3544187	rs113982697	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,40:31:66:0.606:2	./.	./.	./.	./.	./.
chr1	3548136	rs2760321	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:29:10:1.00:2	0/1:0,6:29:6:1.00:2	./.	0/1:5,4:29:9:0.444:2	0/1:0,9:26:9:1.00:2	0/1:0,5:28:5:1.00:2	0/1:10,3:28:13:0.231:2	0/1:0,6:28:6:1.00:2	0/1:0,4:28:4:1.00:2	./.	0/1:0,3:30:3:1.00:2
chr1	3607520	rs3765730	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,12:30:37:0.324:2	0/1:9,9:31:18:0.500:2	0/1:11,7:30:18:0.389:2	./.	./.	./.	0/1:25,29:31:54:0.537:2	0/1:20,25:31:45:0.556:2	./.	0/1:23,20:30:43:0.465:2	./.
chr1	3607532	rs12122732	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,17:33:34:0.500:2	0/1:8,9:33:17:0.529:2	./.	./.	./.	0/1:22,23:32:45:0.511:2	./.	./.	0/1:1,41:33:42:0.976:2	./.	0/1:14,12:33:26:0.462:2
chr1	3638674	rs1801174	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:32:142:1.00:2	0/1:0,65:32:65:1.00:2	0/1:2,18:32:20:0.900:2	0/1:70,88:32:158:0.557:2	0/1:0,120:31:120:1.00:2	0/1:0,127:31:127:1.00:2	0/1:75,67:32:142:0.472:2	0/1:1,144:32:145:0.993:2	0/1:0,133:32:133:1.00:2	0/1:1,144:32:145:0.993:2	0/1:60,64:32:124:0.516:2
chr1	3669172	rs41315312	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:46,27:32:73:0.370:2	0/1:29,16:32:45:0.356:2	./.	./.	./.	./.	./.	0/1:103,67:31:170:0.394:2	./.	0/1:70,34:32:104:0.327:2	./.
chr1	3669201	rs10797410	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,27:29:74:0.365:2	0/1:35,21:28:56:0.375:2	./.	./.	0/1:109,67:30:176:0.381:2	0/1:0,97:30:97:1.00:2	./.	0/1:109,56:29:166:0.339:2	0/1:1,114:30:115:0.991:2	0/1:66,32:30:99:0.327:2	0/1:57,42:30:99:0.424:2
chr1	3669205	rs10910021	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:46,24:34:70:0.343:2	0/1:34,19:32:53:0.358:2	./.	./.	0/1:107,60:33:168:0.359:2	0/1:0,89:32:89:1.00:2	./.	0/1:111,52:32:163:0.319:2	0/1:1,107:33:108:0.991:2	0/1:67,30:32:97:0.309:2	0/1:49,42:32:91:0.462:2
chr1	3677933	rs1181883	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:70,60:28:130:0.462:2	0/1:38,44:28:82:0.537:2	./.	./.	0/1:82,98:28:180:0.544:2	0/1:2,154:28:156:0.987:2	0/1:89,103:28:192:0.536:2	0/1:98,96:28:194:0.495:2	0/1:0,173:29:173:1.00:2	0/1:78,73:28:151:0.483:2	0/1:76,107:28:184:0.585:2
chr1	3679775	rs10910024	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,29:30:58:0.509:2	0/1:0,36:30:36:1.00:2	./.	./.	0/1:2,45:31:47:0.957:2	./.	0/1:21,9:30:30:0.300:2
chr1	3688030	rs3737592	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	./.	./.	./.	./.
chr1	3700618	rs74764187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,37:31:60:0.617:2	./.	./.	./.	./.	./.
chr1	3701663	rs2298227	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,46:32:47:0.979:2	./.	./.	./.	./.	./.
chr1	3712513	rs148481344	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:33:34:0.559:2	./.	./.	./.	./.	./.
chr1	3731965	rs12728401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:31:37:0.459:2	./.	./.	./.	./.	./.
chr1	3732862	rs185664269	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:31:48:0.479:2
chr1	3743319	rs6663840	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:31:11:0.545:2	0/1:54,65:31:119:0.546:2	./.	0/1:67,49:31:116:0.422:2	0/1:43,63:31:106:0.594:2	./.	./.	./.	./.
chr1	3745880	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3745924	rs2275831	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:28:15:0.533:2	./.	./.	./.	./.
chr1	3746514	rs12144567	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3753136	rs2275824	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,22:32:48:0.458:2	0/1:10,6:32:16:0.375:2	0/1:0,5:31:5:1.00:2	./.	0/1:46,41:31:87:0.471:2	./.	./.	0/1:37,23:31:60:0.383:2	0/1:13,33:32:46:0.717:2	0/1:0,43:31:43:1.00:2	0/1:0,64:31:64:1.00:2
chr1	3755675	rs1891941	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,75:33:76:0.987:2	0/1:0,38:32:38:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,92:33:92:1.00:2	0/1:1,94:32:95:0.989:2	0/1:0,91:33:91:1.00:2	0/1:83,57:33:140:0.407:2	0/1:0,112:33:112:1.00:2	0/1:0,112:34:112:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,110:33:110:1.00:2
chr1	3759760	rs115065436	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:30:69:0.478:2
chr1	3759784	rs10797347	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,51:33:51:1.00:2	0/1:44,26:32:70:0.371:2	0/1:0,66:32:66:1.00:2	0/1:0,43:34:43:1.00:2	0/1:0,38:32:38:1.00:2	0/1:1,42:32:43:0.977:2
chr1	3761465	rs72848418	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr1	3761479	rs2275822	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,6:30:20:0.300:2	0/1:12,9:32:21:0.429:2	0/1:5,5:29:10:0.500:2	./.	0/1:20,20:32:40:0.500:2	./.	./.	0/1:25,20:31:45:0.444:2	0/1:25,7:32:32:0.219:2	0/1:0,29:31:29:1.00:2	0/1:0,48:31:48:1.00:2
chr1	3786189	rs1141070	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:29,23:33:52:0.442:2	0/1:27,20:32:47:0.426:2	0/1:2,4:29:6:0.667:2	./.	./.	0/1:56,46:32:102:0.451:2	./.	./.	0/1:31,23:32:54:0.426:2	0/1:38,25:32:63:0.397:2	0/1:41,28:33:69:0.406:2
chr1	3786245	rs12738235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,62:31:151:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr1	3800242	rs3205087	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,57:30:57:1.00:2	0/1:0,24:29:24:1.00:2	./.	./.	0/1:36,50:29:86:0.581:2	0/1:48,50:29:98:0.510:2	0/1:40,44:30:84:0.524:2	0/1:58,37:29:95:0.389:2	0/1:47,50:30:97:0.515:2	0/1:42,40:30:82:0.488:2	0/1:35,44:30:79:0.557:2
chr1	3807388	rs4131373	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,37:30:78:0.474:2	./.	0/1:38,46:31:84:0.548:2	./.	0/1:37,35:32:72:0.486:2	./.
chr1	3807593	rs4274008	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,43:32:44:1.00:2	0/1:0,42:32:42:1.00:2
chr1	4771981	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,27:30:60:0.450:2	./.	./.	./.	./.	./.	./.
chr1	4772053	rs1061968	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:27:28:0.429:2	0/1:15,6:26:21:0.286:2	0/1:22,15:27:37:0.405:2	0/1:8,8:24:16:0.500:2	./.	./.	0/1:0,14:25:14:1.00:2	./.
chr1	4772717	rs242056	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,12:33:23:0.522:2	0/1:11,8:32:19:0.421:2	0/1:0,2:32:2:1.00:2	0/1:0,22:33:22:1.00:2	0/1:11,7:32:18:0.389:2	0/1:10,6:33:16:0.375:2	0/1:15,9:32:24:0.375:2	0/1:0,16:32:16:1.00:2	0/1:9,6:33:15:0.400:2	./.	0/1:7,15:32:22:0.682:2
chr1	5924518	rs115526767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,76:30:155:0.490:2	./.	./.	./.	./.	./.	./.
chr1	5926507	rs555164	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,22:31:63:0.349:2	0/1:14,20:32:34:0.588:2	0/1:10,6:33:16:0.375:2	./.	0/1:0,62:33:62:1.00:2	./.	0/1:39,34:33:73:0.466:2	./.	0/1:2,83:33:85:0.976:2	0/1:31,40:32:71:0.563:2	0/1:61,36:32:98:0.371:2
chr1	5927169	rs113445782	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,12:32:37:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr1	5927864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2
chr1	5937168	rs3747992	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,55:29:89:0.618:2	0/1:24,34:28:58:0.586:2	0/1:13,4:30:17:0.235:2	0/1:69,68:30:137:0.496:2	0/1:81,61:31:142:0.430:2	0/1:71,81:30:152:0.533:2	./.	0/1:73,83:31:156:0.532:2	./.	0/1:62,77:30:139:0.554:2	0/1:46,42:30:89:0.477:2
chr1	5937327	rs3747990	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,190:33:191:0.995:2	./.	./.
chr1	5940243	rs17472401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,46:30:101:0.455:2
chr1	5947403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.
chr1	5951028	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:34:85:0.047:2	./.	./.
chr1	5965381	rs12120967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,189:32:189:1.00:2	./.	./.
chr1	5965455	rs571655	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	0/1:48,42:32:90:0.467:2	./.	./.	./.	./.
chr1	5969240	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr1	5987807	rs367909950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr1	6142308	rs2227911	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,44:32:92:0.478:2	./.	./.	./.	./.	./.	./.	./.
chr1	6149053	rs2273043	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:31:43:0.465:2	./.	0/1:28,20:30:48:0.417:2	./.	./.	0/1:0,32:31:32:1.00:2	0/1:15,17:31:32:0.531:2	0/1:24,25:31:49:0.510:2
chr1	6149122	rs2273042	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:29:26:0.654:2	./.	0/1:17,6:30:24:0.261:2	./.	./.	0/1:0,14:27:14:1.00:2	0/1:9,6:31:15:0.400:2	0/1:13,16:30:29:0.552:2
chr1	6158562	rs2229002	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,91:29:190:0.479:2	0/1:69,42:30:111:0.378:2	./.	0/1:1,170:29:171:0.994:2	0/1:2,168:29:170:0.988:2	0/1:2,168:29:170:0.988:2	./.	./.	0/1:1,171:30:172:0.994:2	0/1:1,176:30:177:0.994:2	0/1:1,157:29:158:0.994:2
chr1	6162054	rs6696489	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:4,3:33:7:0.429:2	./.	0/1:0,8:32:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,10:32:10:1.00:2	./.	./.	0/1:0,6:33:6:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,2:28:2:1.00:2
chr1	6162132	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.
chr1	6184092	rs2843493	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:58,48:31:106:0.453:2	0/1:35,34:32:69:0.493:2	./.	0/1:88,61:31:150:0.409:2	./.	0/1:65,52:33:119:0.444:2	0/1:0,65:31:65:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,113:32:113:1.00:2	0/1:62,43:31:105:0.410:2	0/1:0,85:30:85:1.00:2
chr1	6196869	rs2250358	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,72:30:72:1.00:2	0/1:2,61:30:63:0.968:2	./.	./.	./.
chr1	6203971	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,26:32:106:0.245:2	./.	./.	./.	./.	./.	./.	./.
chr1	6204161	rs17436816	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,80:31:178:0.449:2	0/1:3,142:32:145:0.979:2	./.	./.	./.
chr1	6209363	rs12565328	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:1,37:31:38:0.974:2	./.	0/1:31,44:31:75:0.587:2	./.	./.	./.	./.	./.	./.	0/1:30,31:31:61:0.508:2
chr1	6211183	rs9434711	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,72:31:74:0.986:2	0/1:1,62:32:63:0.984:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,34:32:85:0.400:2
chr1	6215736	rs12074369	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,24:30:36:0.667:2	0/1:11,8:29:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,15:29:52:0.288:2
chr1	6267531	rs12070387	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,55:27:93:0.591:2	./.	./.	./.	./.	./.	./.	./.
chr1	6269021	rs114798118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	6269028	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr1	6269340	rs4908865	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	./.	./.	./.	./.	./.
chr1	6271125	rs1052598	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:28:33:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr1	6272078	rs12073329	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,23:30:53:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr1	6272813	rs2294711	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	6278414	rs709209	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,76:33:78:0.974:2	./.	0/1:51,36:32:87:0.414:2	./.	./.	0/1:0,76:34:76:1.00:2	0/1:29,24:32:53:0.453:2	0/1:33,28:33:61:0.459:2
chr1	6279370	rs846111	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,48:33:89:0.545:2	./.	0/1:40,55:31:95:0.579:2	./.	./.	0/1:0,105:33:105:1.00:2	0/1:36,37:30:73:0.507:2	0/1:64,55:31:119:0.462:2
chr1	6313938	rs12735670	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:31:3:1.00:2	0/1:3,6:28:9:0.667:2	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	0/1:5,5:32:10:0.500:2	./.
chr1	6314201	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:159:0.025:2
chr1	6314822	rs11590458	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,14:31:14:1.00:2	0/1:60,51:28:111:0.459:2	./.	0/1:72,67:30:140:0.482:2	0/1:3,104:30:107:0.972:2	0/1:0,126:30:127:1.00:2	./.	0/1:51,44:28:95:0.463:2	0/1:48,38:28:87:0.442:2
chr1	6341216	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:28:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6418868	rs199794065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,68:31:148:0.459:2
chr1	6473294	rs7529205	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.	0/1:23,19:32:42:0.452:2
chr1	6500712	rs367944375	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:28:7:0.714:2	./.	./.	./.	./.	./.
chr1	6501044	rs2311045	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	./.	0/1:7,9:32:16:0.563:2
chr1	6505917	rs150033799	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.
chr1	6511780	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:31:25:0.400:2	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6517476	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,6:31:139:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr1	6524649	rs35137293	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.
chr1	6524688	rs3170675	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:31:58:0.534:2	0/1:17,15:32:32:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6528564	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:85:0.048:2	./.
chr1	6528589	rs3138150	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,61:31:106:0.581:2	./.	./.	./.	./.	./.
chr1	6529443	rs730600	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	0/1:21,29:30:50:0.580:2	./.	./.	./.	./.	./.
chr1	6531589	rs74809741	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:30:20:0.700:2	./.	./.	./.	./.	./.
chr1	6533393	rs61741379	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:30:26:0.577:2	./.	./.	./.	./.	./.
chr1	6534580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.
chr1	6556585	rs201669114	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,91:31:172:0.529:2	0/1:71,63:31:134:0.470:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6614230	rs10864625	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,6:31:21:0.286:2	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	0/1:14,13:31:27:0.481:2	0/1:33,25:30:58:0.431:2	0/1:13,23:32:36:0.639:2	./.	./.
chr1	6614535	rs4908923	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,4:28:4:1.00:2	./.
chr1	6631045	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	./.
chr1	6631106	rs41278020	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,65:31:185:0.351:2	./.	./.	./.
chr1	6635231	rs10864628	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,12:34:12:1.00:2	0/1:1,76:33:77:0.987:2	0/1:0,39:31:39:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,47:32:47:1.00:2
chr1	6635306	rs34160967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,76:32:172:0.442:2	./.	./.	./.	./.	./.	./.
chr1	6640944	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.
chr1	6649028	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,68:30:114:0.596:2	./.	./.	./.	./.
chr1	6649228	rs2229330	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:29:25:0.160:2	./.	./.	./.
chr1	6655545	rs376312819	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:32:175:0.023:2	./.	./.	./.	./.	./.	./.
chr1	6659505	rs2232460	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:30:6:0.667:2	0/1:34,36:31:70:0.514:2	./.	0/1:0,56:31:56:1.00:2	0/1:38,31:32:69:0.449:2	./.	0/1:23,27:32:50:0.540:2	0/1:26,29:33:55:0.527:2	./.
chr1	6662057	rs2232455	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2
chr1	6685274	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.
chr1	6685275	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.
chr1	6685300	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.
chr1	6685352	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6693097	rs3174820	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.	0/1:0,39:30:39:1.00:2	0/1:14,10:30:24:0.417:2	./.	0/1:51,34:31:85:0.400:2	0/1:29,13:30:42:0.310:2	./.
chr1	6704635	rs200458	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,19:29:36:0.543:2	0/1:15,12:28:27:0.444:2	0/1:1,5:28:6:0.833:2	0/1:0,51:29:51:1.00:2	0/1:21,21:31:42:0.500:2	0/1:0,50:31:50:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,48:29:48:1.00:2	0/1:30,25:31:55:0.455:2	0/1:1,50:30:51:0.980:2	0/1:0,44:30:44:1.00:2
chr1	6705874	rs200454	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,86:31:192:0.450:2	./.	0/1:104,82:31:186:0.441:2	./.	./.	./.	0/1:81,65:30:146:0.445:2
chr1	6705875	rs202049277	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,29:12:172:0.170:2	./.	./.	./.	0/1:167,22:13:189:0.116:2	./.	./.	./.
chr1	6711146	rs12145525	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:44,41:29:85:0.482:2	./.	0/1:0,93:30:93:1.00:2	0/1:53,38:29:91:0.418:2	./.	0/1:36,39:31:75:0.520:2	0/1:32,49:29:81:0.605:2	./.
chr1	6738508	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6741001	rs201724546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	6845564	rs192783463	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr1	7723534	rs3737907	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,77:31:165:0.467:2	0/1:69,68:31:137:0.496:2	./.	./.	./.	./.	./.
chr1	7723579	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.
chr1	7723588	rs3737906	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	7723957	rs12128526	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,33:32:33:1.00:2	0/1:1,26:32:27:0.963:2	0/1:0,6:32:6:1.00:2	./.	0/1:31,29:31:60:0.483:2	0/1:28,20:32:48:0.417:2	./.	0/1:27,36:32:63:0.571:2	./.	./.	./.
chr1	7724340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:26:33:0.121:2	./.	./.
chr1	7797503	rs41278952	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,46:32:82:0.561:2	./.	./.	./.	0/1:45,30:33:75:0.400:2	0/1:55,35:33:90:0.389:2	./.	./.
chr1	7833485	rs11576572	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,90:30:191:0.471:2	0/1:98,62:31:161:0.388:2	0/1:25,20:29:46:0.444:2	0/1:117,79:29:197:0.403:2	0/1:134,63:29:197:0.320:2	0/1:101,94:29:195:0.482:2	0/1:124,74:30:198:0.374:2	0/1:115,81:29:197:0.413:2	0/1:132,63:30:196:0.323:2	./.	0/1:116,79:30:196:0.405:2
chr1	7837379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,5:28:67:0.075:2
chr1	7858700	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,59:30:149:0.399:2	./.	./.	./.	./.
chr1	7870048	rs228669	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:29:139:1.00:2	0/1:0,86:28:86:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,180:29:180:1.00:2	0/1:1,192:30:193:0.995:2	0/1:0,186:30:186:1.00:2	0/1:0,186:31:186:1.00:2	0/1:1,193:30:194:0.995:2	0/1:2,188:30:190:0.989:2	0/1:0,156:30:156:1.00:2	0/1:0,131:30:131:1.00:2
chr1	7880683	rs10462020	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,32:32:56:0.571:2	0/1:16,17:32:33:0.515:2	./.	./.	0/1:64,52:31:116:0.448:2	0/1:59,41:32:100:0.410:2	0/1:59,37:31:96:0.385:2	0/1:49,58:32:107:0.542:2	0/1:36,45:32:81:0.556:2	./.	./.
chr1	7887248	rs2859387	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.	0/1:13,24:32:37:0.649:2	./.	./.	0/1:7,4:33:11:0.364:2	0/1:24,15:32:39:0.385:2
chr1	7887493	rs228696	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,58:30:58:1.00:2	0/1:2,79:30:81:0.975:2	0/1:0,59:29:59:1.00:2	0/1:3,65:30:68:0.956:2	0/1:0,70:31:70:1.00:2	0/1:0,66:29:67:1.00:2	0/1:1,100:30:101:0.990:2
chr1	7887579	rs228697	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,79:29:182:0.434:2	./.	./.	./.	./.	./.	0/1:95,93:29:188:0.495:2	./.
chr1	7887605	rs17031614	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.
chr1	7887632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:31:173:0.023:2	./.	./.
chr1	7889941	rs2640908	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,57:32:122:0.467:2	./.	0/1:87,75:33:162:0.463:2	./.	./.	0/1:75,52:33:127:0.409:2	0/1:45,53:33:98:0.541:2
chr1	7890024	rs201662971	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,7:32:89:0.079:2	./.	./.	./.	./.	./.	0/1:66,4:33:71:0.057:2
chr1	7890026	rs199947375	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,7:28:88:0.080:2	./.	./.	./.	./.	./.	0/1:67,4:34:71:0.056:2
chr1	7890053	rs1776342	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,6:32:101:0.060:2	0/1:73,10:32:83:0.120:2	0/1:124,5:32:129:0.039:2	0/1:63,13:29:76:0.171:2	0/1:141,16:31:158:0.102:2	0/1:116,10:32:126:0.079:2	0/1:41,7:29:48:0.146:2	0/1:49,3:33:52:0.058:2
chr1	7890055	rs11121034	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,6:32:101:0.059:2	0/1:75,10:32:85:0.118:2	0/1:123,5:33:128:0.039:2	0/1:66,13:30:79:0.165:2	0/1:148,16:31:164:0.098:2	0/1:121,10:32:131:0.076:2	0/1:44,7:30:51:0.137:2	./.
chr1	7890064	rs12023156	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,65:29:83:0.783:2	0/1:12,25:30:37:0.676:2	0/1:0,12:31:12:1.00:2	0/1:28,72:30:100:0.720:2	./.	0/1:26,90:29:116:0.776:2	./.	0/1:50,88:29:138:0.638:2	0/1:41,76:30:117:0.650:2	./.	0/1:21,33:30:54:0.611:2
chr1	7890117	rs2640909	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,25:29:76:0.329:2	0/1:18,25:28:43:0.581:2	./.	0/1:66,46:29:112:0.411:2	0/1:76,60:29:136:0.441:2	0/1:61,47:29:108:0.435:2	0/1:55,70:29:125:0.560:2	0/1:62,84:30:146:0.575:2	0/1:65,61:30:126:0.484:2	0/1:45,38:29:85:0.458:2	./.
chr1	7897133	rs10462021	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,24:30:47:0.511:2	0/1:19,14:28:33:0.424:2	./.	./.	0/1:26,20:29:46:0.435:2	0/1:19,35:28:55:0.648:2	0/1:38,31:28:69:0.449:2	0/1:30,26:29:56:0.464:2	0/1:27,15:27:42:0.357:2	./.	./.
chr1	7902773	rs144281505	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,51:32:102:0.500:2	0/1:49,25:33:74:0.338:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	7913029	rs34305100	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,73:32:183:0.399:2	0/1:101,93:34:194:0.479:2	./.	./.
chr1	7913430	rs228648	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,47:32:95:0.495:2	0/1:41,27:31:68:0.397:2	0/1:0,15:31:15:1.00:2	0/1:2,148:31:150:0.987:2	0/1:104,51:31:155:0.329:2	0/1:2,161:31:163:0.988:2	0/1:100,76:32:176:0.432:2	0/1:114,64:31:178:0.360:2	0/1:92,78:32:170:0.459:2	0/1:0,160:32:160:1.00:2	0/1:115,72:32:187:0.385:2
chr1	7913445	rs13306061	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,98:32:164:0.598:2	0/1:79,84:33:163:0.515:2	./.	./.
chr1	8025444	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.
chr1	8384514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	./.
chr1	8390384	rs56125713	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:32:40:0.500:2	0/1:35,30:33:65:0.462:2	0/1:38,15:33:53:0.283:2	./.	0/1:34,21:32:55:0.382:2
chr1	8390888	rs2289731	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:15,9:31:24:0.375:2	0/1:1,16:31:17:0.941:2	0/1:0,25:30:25:1.00:2	./.	./.	./.	0/1:0,27:31:27:1.00:2	./.
chr1	8395560	rs7535752	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	0/1:6,6:32:12:0.500:2	0/1:10,6:32:16:0.375:2	0/1:9,17:33:26:0.654:2	./.	0/1:12,5:32:17:0.294:2
chr1	8418644	rs11121172	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,4:29:4:1.00:2	0/1:13,6:31:19:0.316:2	0/1:0,18:29:18:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,29:32:29:1.00:2	0/1:17,14:30:31:0.452:2	0/1:0,15:30:15:1.00:2	0/1:0,24:31:24:1.00:2
chr1	8418650	rs1058766	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,5:31:5:1.00:2	0/1:14,6:32:20:0.300:2	0/1:0,20:31:20:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,31:32:31:1.00:2	0/1:16,14:33:30:0.467:2	0/1:0,19:31:19:1.00:2	0/1:0,24:31:24:1.00:2
chr1	8420737	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.
chr1	8421092	rs2784735	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.
chr1	8421203	rs13596	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,10:29:10:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:0,3:31:3:1.00:2
chr1	8425900	rs3753275	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,12:28:36:0.343:2	0/1:16,12:29:28:0.429:2	0/1:5,3:30:8:0.375:2	./.	0/1:51,32:30:83:0.386:2	./.	0/1:54,26:29:81:0.325:2	0/1:70,36:29:106:0.340:2	0/1:31,34:30:65:0.523:2	./.	0/1:22,28:29:51:0.560:2
chr1	8557520	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:30:172:0.029:2	./.	./.
chr1	8716048	rs376012328	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	8923330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	8928125	rs2071412	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:29:20:0.316:2	./.	./.	./.	0/1:69,72:30:141:0.511:2	0/1:79,68:30:149:0.463:2	./.	0/1:78,82:31:161:0.513:2	0/1:73,95:31:168:0.565:2
chr1	8928129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.
chr1	9009406	rs2274327	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,45:31:46:0.978:2	0/1:0,20:31:20:1.00:2	./.	0/1:38,35:31:73:0.479:2	0/1:1,69:31:70:0.986:2	0/1:0,61:30:61:1.00:2	0/1:0,65:31:65:1.00:2	0/1:32,22:31:54:0.407:2	./.	0/1:2,50:31:52:0.962:2	0/1:1,74:30:75:0.987:2
chr1	9009444	rs2274328	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,28:32:28:1.00:2	./.	0/1:39,37:32:76:0.487:2	0/1:0,91:32:91:1.00:2	0/1:0,70:32:70:1.00:2	0/1:1,68:33:69:0.986:2	0/1:37,31:32:68:0.456:2	0/1:59,45:34:104:0.433:2	0/1:2,67:32:69:0.971:2	0/1:1,75:33:76:0.987:2
chr1	9009451	rs2274329	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,48:33:109:0.440:2	./.	./.
chr1	9009470	rs2274330	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,38:29:108:0.352:2	./.	./.
chr1	9017204	rs2274333	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,13:28:32:0.406:2	0/1:27,12:28:39:0.308:2	0/1:7,4:30:11:0.364:2	0/1:69,4:31:73:0.055:2	./.	./.	0/1:52,55:29:107:0.514:2	0/1:50,39:29:89:0.438:2	0/1:24,17:29:41:0.415:2	./.	./.
chr1	9030964	rs3737665	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:40,19:30:59:0.322:2	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	0/1:44,34:30:78:0.436:2	./.	./.	./.	./.
chr1	9074861	rs12402973	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,4:33:9:0.444:2	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	./.
chr1	9099920	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.
chr1	9129620	rs5438	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,61:33:128:0.477:2	./.	./.	./.	./.
chr1	9165610	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,63:31:186:0.339:2	./.	./.	./.	./.	./.
chr1	9165669	rs12075362	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,94:31:190:0.495:2	./.	./.	./.	./.	./.	./.
chr1	9165685	rs72637739	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,13:30:24:0.542:2	0/1:85,96:31:181:0.530:2	./.	./.	0/1:81,95:32:176:0.540:2	./.	./.	./.	./.
chr1	9305164	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,9:15:77:0.117:2	./.	./.	./.	./.	./.
chr1	9305445	rs34603401	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:33:31:0.419:2	0/1:6,9:33:15:0.600:2	./.	./.	./.	0/1:15,22:31:37:0.595:2	./.	0/1:2,28:32:30:0.933:2	./.	0/1:12,7:33:19:0.368:2	0/1:12,20:32:32:0.625:2
chr1	9307033	rs7524046	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,25:30:53:0.472:2	0/1:15,14:32:29:0.483:2	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9307138	rs11121350	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,19:28:66:0.288:2	0/1:20,26:28:46:0.565:2	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9322155	rs149778702	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,44:31:87:0.506:2	0/1:27,32:31:59:0.542:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9323759	rs377461550	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:32:15:0.667:2
chr1	9323910	rs6688832	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:13,12:32:25:0.480:2
chr1	9323916	rs148202091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr1	9324213	rs17368528	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:31:19:0.316:2	0/1:10,6:33:16:0.375:2	./.	./.	./.	0/1:18,24:32:42:0.571:2	./.	0/1:0,37:32:37:1.00:2	./.	./.	./.
chr1	9324571	rs9434742	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,30:28:70:0.429:2	0/1:21,15:27:36:0.417:2	./.	0/1:57,45:29:102:0.441:2	./.	0/1:67,40:28:107:0.374:2	0/1:61,40:29:101:0.396:2	0/1:3,75:28:78:0.962:2	./.	0/1:29,25:29:54:0.463:2	0/1:38,25:28:63:0.397:2
chr1	9324670	rs9434743	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,31:26:73:0.431:2	0/1:16,14:27:30:0.467:2	./.	0/1:41,22:28:63:0.349:2	./.	0/1:60,27:28:87:0.310:2	0/1:40,6:30:46:0.130:2	0/1:0,35:28:36:1.00:2	./.	0/1:23,17:27:40:0.425:2	./.
chr1	9416151	rs9435243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:29:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9416346	rs3795309	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:29:24:0.333:2	./.	./.	0/1:18,15:30:33:0.455:2	./.	./.	0/1:15,10:30:25:0.400:2	./.
chr1	9662209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9670834	rs4926472	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,20:31:20:1.00:2	0/1:7,3:31:10:0.300:2	0/1:2,36:32:38:0.947:2	0/1:17,9:31:26:0.346:2	0/1:20,40:31:60:0.667:2	0/1:0,29:32:29:1.00:2	0/1:19,25:31:44:0.568:2	0/1:26,22:33:48:0.458:2	0/1:8,11:33:19:0.579:2	0/1:0,15:32:15:1.00:2
chr1	9777599	rs61755420	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,42:32:72:0.583:2	./.	./.	./.
chr1	9778889	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.
chr1	9780836	rs201274224	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,6:17:26:0.231:2	./.	0/1:52,20:11:73:0.278:2	0/1:58,25:9:83:0.301:2	0/1:39,15:13:54:0.278:2	./.	0/1:42,19:9:62:0.311:2	0/1:51,17:9:69:0.250:2	0/1:30,16:10:47:0.348:2	0/1:23,10:11:34:0.303:2
chr1	9782386	rs139848768	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,75:31:163:0.463:2	./.	0/1:74,74:29:149:0.500:2
chr1	9784423	rs11121484	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,47:31:79:0.595:2	0/1:26,19:32:45:0.422:2	./.	./.	./.	./.	0/1:47,25:32:72:0.347:2	./.	0/1:41,45:32:86:0.523:2	./.	./.
chr1	9784916	rs143168081	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9790659	rs148584143	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	./.	./.
chr1	9804693	rs7550295	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,9:32:32:0.281:2	0/1:8,16:31:24:0.667:2	./.	./.	./.	./.	0/1:11,12:30:23:0.522:2	./.	0/1:20,18:32:38:0.474:2	./.	./.
chr1	9811541	rs11674	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,28:27:72:0.389:2	0/1:15,17:27:32:0.531:2	./.	./.	./.	./.	0/1:51,41:28:92:0.446:2	./.	0/1:43,36:29:79:0.456:2	./.	./.
chr1	9811653	rs35331030	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,65:32:160:0.406:2	./.	0/1:92,90:31:182:0.495:2
chr1	9833375	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.
chr1	10057305	rs111277407	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	0/1:22,11:28:33:0.333:2	./.
chr1	10068281	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,7:28:90:0.078:2	./.	./.	./.	./.	./.	./.
chr1	10093760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	10190575	rs61760196	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:32:80:0.438:2	0/1:67,44:32:111:0.396:2
chr1	10218439	rs2273299	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,50:31:92:0.543:2	0/1:23,15:31:38:0.395:2	./.	0/1:37,22:29:59:0.373:2	./.	0/1:46,48:31:94:0.511:2	0/1:45,39:31:84:0.464:2	0/1:51,39:31:91:0.433:2
chr1	10218472	rs114291761	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,60:33:119:0.504:2	./.	./.
chr1	10228220	rs147961171	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:32:80:0.450:2	./.	./.	./.	./.
chr1	10238770	rs7546642	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,15:30:39:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr1	10318652	rs12402052	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:29:13:1.00:2	./.	0/1:45,24:29:69:0.348:2	./.	./.	0/1:4,89:30:93:0.957:2	./.	./.	./.
chr1	10339129	rs72865963	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,69:32:128:0.539:2	0/1:102,94:33:196:0.480:2
chr1	10342420	rs200557182	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:32:55:0.407:2	./.	./.	./.	./.
chr1	10342522	rs17034660	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,59:32:108:0.546:2	0/1:69,69:32:138:0.500:2
chr1	10363664	rs41274458	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,37:33:77:0.481:2	./.	./.
chr1	10364057	rs41274462	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.	./.
chr1	10397567	rs2297881	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,80:32:161:0.497:2	0/1:89,68:30:157:0.433:2
chr1	10421878	rs12125492	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,31:30:53:0.585:2	./.	./.	./.	./.	./.	./.	./.
chr1	10425476	rs78662124	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,12:16:61:0.197:2	0/1:29,7:18:36:0.194:2	./.	0/1:51,12:20:63:0.190:2	0/1:47,10:16:57:0.175:2	0/1:40,12:20:53:0.231:2	0/1:40,11:15:51:0.216:2	0/1:68,16:16:84:0.190:2	0/1:44,19:17:63:0.302:2	0/1:34,11:14:45:0.244:2	0/1:47,15:19:62:0.242:2
chr1	10428611	rs201508062	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:30:87:0.471:2	./.	./.	./.
chr1	10435324	rs11121552	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:27,23:31:50:0.460:2	./.	./.	0/1:1,49:31:50:0.980:2	./.	./.	./.
chr1	10436647	rs148690591	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,11:28:43:0.256:2	./.	./.	./.	./.
chr1	10460485	rs1049887	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,26:29:26:1.00:2	./.	0/1:58,50:30:108:0.463:2	./.	./.	0/1:4,153:29:157:0.975:2	./.	./.	./.
chr1	10473196	rs2229687	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:29:10:1.00:2	./.	0/1:32,28:29:60:0.467:2	./.	./.	0/1:1,66:29:67:0.985:2	./.	0/1:33,29:29:62:0.468:2	0/1:38,30:30:68:0.441:2
chr1	10473200	rs41289075	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	0/1:39,29:32:68:0.426:2
chr1	10477062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.
chr1	10479791	rs41274480	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,24:32:70:0.343:2	0/1:35,47:32:82:0.573:2
chr1	10490550	rs661272	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2	0/1:0,14:30:14:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	10511544	rs628462	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,35:31:61:0.574:2	0/1:0,52:29:52:1.00:2	0/1:41,26:31:67:0.388:2	0/1:24,25:31:49:0.510:2	./.	./.	0/1:24,31:31:55:0.564:2	0/1:0,64:30:64:1.00:2
chr1	10511589	rs666103	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:29:8:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,37:29:37:1.00:2	0/1:1,42:29:43:0.977:2	0/1:0,37:30:37:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,49:29:49:1.00:2
chr1	10523185	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,8:18:90:0.089:2
chr1	10596341	rs12375	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,66:31:67:0.985:2	0/1:3,51:32:54:0.944:2	0/1:0,5:27:5:1.00:2	./.	./.	0/1:60,54:30:114:0.474:2	./.	0/1:0,115:31:115:1.00:2	0/1:0,93:32:93:1.00:2	0/1:67,46:30:113:0.407:2	./.
chr1	10687329	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:29:128:0.039:2	./.	./.
chr1	10689942	rs11539794	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	./.	0/1:35,27:30:62:0.435:2	./.	./.	./.	0/1:6,17:31:23:0.739:2
chr1	10702997	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.
chr1	10705110	rs4845941	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,56:30:123:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr1	10708142	rs778228	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:72,54:31:126:0.429:2	./.	./.	0/1:69,59:31:128:0.461:2	./.	./.	./.	0/1:56,20:31:76:0.263:2
chr1	10709441	rs284299	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:67,37:31:104:0.356:2	./.	./.	0/1:32,36:32:68:0.529:2	./.	./.	./.	0/1:24,34:31:58:0.586:2
chr1	10713765	rs284294	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,5:26:13:0.385:2	0/1:3,4:32:7:0.571:2	0/1:6,3:31:9:0.333:2	0/1:11,7:30:18:0.389:2	./.	0/1:4,3:29:7:0.429:2	./.	0/1:0,14:28:14:1.00:2	0/1:5,5:31:10:0.500:2	0/1:1,3:26:4:0.750:2	0/1:0,3:29:3:1.00:2
chr1	10713902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.
chr1	10719818	rs146116942	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,44:31:91:0.484:2	./.
chr1	10725387	rs17035539	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,25:29:62:0.403:2	./.
chr1	10725498	rs284322	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr1	10725587	rs76910492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,8:28:10:0.800:2	./.
chr1	11007856	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,11:13:65:0.172:2	./.	./.	./.	./.	./.	./.	./.
chr1	11008102	rs1281018	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,41:31:69:0.594:2	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.	./.
chr1	11008341	rs10864483	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,20:30:40:0.500:2	0/1:12,11:31:23:0.478:2	./.	0/1:27,20:30:47:0.426:2	./.	./.	./.	./.	./.	0/1:28,10:31:38:0.263:2	./.
chr1	11008497	rs1281017	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,35:31:68:0.522:2	./.	0/1:0,74:31:75:1.00:2	0/1:36,46:31:82:0.561:2	./.	./.	./.
chr1	11008594	rs1281016	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,65:29:118:0.551:2	./.	0/1:57,72:32:129:0.558:2	./.	./.	./.	./.
chr1	11008695	rs17036032	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:28:23:0.522:2	0/1:22,18:28:40:0.450:2	./.	./.	./.
chr1	11009679	rs1281013	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,19:29:55:0.345:2	./.	0/1:26,34:29:60:0.567:2	./.	./.	./.	./.
chr1	11009703	rs1281012	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,31:31:68:0.456:2	./.	0/1:30,38:32:68:0.559:2	./.	./.	./.	./.
chr1	11014118	rs45537241	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,41:28:131:0.313:2	0/1:110,65:29:175:0.371:2	./.	./.	./.
chr1	11014127	rs184250574	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,35:32:114:0.307:2	./.	./.	./.	./.
chr1	11015165	rs75130475	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:32:45:0.489:2	0/1:25,43:33:68:0.632:2	./.	./.	./.
chr1	11017753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.	./.
chr1	11018765	rs12758610	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,14:31:26:0.538:2	./.	0/1:23,13:30:36:0.361:2	./.	./.	./.	./.
chr1	11077010	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,3:33:52:0.059:2	./.	./.	./.	./.	./.
chr1	11083297	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.
chr1	11087524	rs1782455	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,49:33:89:0.551:2	0/1:35,26:32:61:0.426:2	0/1:0,18:32:18:1.00:2	0/1:72,54:32:126:0.429:2	0/1:46,44:32:90:0.489:2	0/1:1,111:32:112:0.991:2	./.	0/1:0,117:32:118:1.00:2	0/1:1,126:33:127:0.992:2	0/1:0,107:31:107:1.00:2	0/1:0,133:33:133:1.00:2
chr1	11090897	rs2273346	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,91:31:177:0.517:2	0/1:49,68:29:117:0.581:2	./.
chr1	11090916	rs12711521	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,61:31:132:0.462:2	0/1:40,42:32:82:0.512:2	0/1:0,12:31:12:1.00:2	0/1:80,78:30:158:0.494:2	0/1:75,69:30:144:0.479:2	0/1:0,128:29:128:1.00:2	./.	0/1:2,152:30:154:0.987:2	0/1:93,82:31:175:0.469:2	0/1:71,40:31:111:0.360:2	0/1:1,145:31:146:0.993:2
chr1	11097867	rs12142107	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,24:33:67:0.358:2	./.	./.
chr1	11102939	rs61735598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,91:31:189:0.481:2	./.
chr1	11106617	rs138386377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,15:31:54:0.278:2	./.
chr1	11114940	rs13616	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:33:45:0.533:2	./.	./.
chr1	11115034	rs146632472	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:33:33:0.455:2	./.
chr1	11115898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.
chr1	11128712	rs147762859	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	11132217	rs1130683	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,15:31:32:0.469:2	0/1:18,13:31:31:0.419:2	0/1:0,4:30:4:1.00:2	0/1:38,35:31:73:0.479:2	./.	0/1:1,59:30:60:0.983:2	./.	0/1:33,25:32:58:0.431:2	0/1:26,20:32:46:0.435:2	0/1:19,20:31:39:0.513:2	0/1:41,34:32:75:0.453:2
chr1	11137661	rs2273339	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,35:31:58:0.603:2	./.	./.
chr1	11140618	rs202153123	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:30:67:0.478:2	0/1:74,30:29:104:0.288:2	./.
chr1	11140620	rs1194754	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:33:65:0.492:2	0/1:56,45:29:101:0.446:2	./.
chr1	11140622	rs9430364	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,20:27:54:0.370:2	0/1:23,13:32:36:0.361:2	0/1:2,10:31:12:0.833:2	./.	0/1:71,10:20:81:0.123:2	0/1:4,35:31:39:0.897:2	0/1:93,8:20:101:0.079:2	0/1:34,29:28:63:0.460:2	0/1:33,14:31:47:0.298:2	0/1:56,24:32:80:0.300:2	0/1:33,24:27:57:0.421:2
chr1	11140626	rs61773686	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.
chr1	11140630	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,5:33:83:0.060:2	./.	./.	./.	./.	./.
chr1	11141187	rs2258621	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,57:30:104:0.548:2	0/1:40,32:29:72:0.444:2	0/1:0,20:28:20:1.00:2	0/1:83,87:29:171:0.512:2	./.	0/1:0,150:29:150:1.00:2	./.	0/1:101,78:29:179:0.436:2	0/1:0,145:30:145:1.00:2	0/1:67,52:27:119:0.437:2	0/1:69,61:29:130:0.469:2
chr1	11142859	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr1	11147646	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr1	11150682	rs3737621	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,41:32:69:0.594:2	./.	./.
chr1	11158095	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,3:30:15:0.200:2	./.	./.	./.	./.	./.	./.
chr1	11159823	rs12133922	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,31:32:81:0.383:2	./.	./.
chr1	11181327	rs11121691	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,17:30:47:0.362:2	./.	./.	0/1:32,50:30:82:0.610:2	0/1:1,57:30:58:0.983:2	./.	0/1:0,94:31:94:1.00:2	0/1:60,39:30:99:0.394:2	./.	./.	0/1:26,30:31:56:0.536:2
chr1	11190646	rs2275527	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,43:31:90:0.483:2	0/1:25,35:30:60:0.583:2	./.	0/1:35,52:30:87:0.598:2	0/1:0,77:30:77:1.00:2	./.	0/1:2,50:30:52:0.962:2	0/1:30,45:30:75:0.600:2	./.	./.	0/1:27,25:31:52:0.481:2
chr1	11205058	rs1057079	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,36:32:74:0.486:2	0/1:19,17:33:36:0.472:2	0/1:0,8:32:8:1.00:2	0/1:39,43:31:82:0.524:2	./.	0/1:1,82:31:83:0.988:2	./.	0/1:40,37:32:77:0.481:2	0/1:49,29:33:78:0.372:2	0/1:26,22:32:48:0.458:2	0/1:50,36:32:86:0.419:2
chr1	11249885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.	./.
chr1	11253684	rs28991009	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:30:59:0.356:2	0/1:24,17:32:41:0.415:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11255008	rs2076658	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,70:30:129:0.543:2	./.	./.
chr1	11273526	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	11288758	rs1064261	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,35:31:73:0.479:2	0/1:22,14:32:36:0.389:2	0/1:0,6:31:6:1.00:2	0/1:44,30:32:74:0.405:2	./.	0/1:0,79:30:79:1.00:2	./.	0/1:42,39:31:81:0.481:2	0/1:1,89:32:90:0.989:2	0/1:49,25:32:74:0.338:2	0/1:41,28:31:69:0.406:2
chr1	11301714	rs1135172	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,40:30:86:0.465:2	0/1:28,26:30:54:0.481:2	0/1:0,16:30:16:1.00:2	0/1:61,59:30:120:0.492:2	./.	0/1:0,133:29:133:1.00:2	0/1:172,5:27:177:0.028:2	0/1:75,104:29:179:0.581:2	0/1:0,114:30:114:1.00:2	0/1:48,33:29:82:0.407:2	0/1:45,64:29:110:0.587:2
chr1	11316154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:28:76:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11316244	rs12120294	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:30:34:0.412:2	./.	0/1:14,14:30:28:0.500:2	./.
chr1	11354893	rs2744814	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,81:32:178:0.455:2	./.
chr1	11354910	rs190801584	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,17:30:32:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11354919	rs2788540	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,69:31:141:0.489:2	./.
chr1	11561164	rs41274528	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:30:38:0.421:2	./.	0/1:10,9:32:19:0.474:2	./.
chr1	11561593	rs2817580	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:29:24:1.00:2	0/1:0,12:25:12:1.00:2	0/1:0,20:29:20:1.00:2	./.	./.	0/1:9,3:29:12:0.250:2	0/1:9,4:29:13:0.308:2	0/1:0,18:30:18:1.00:2
chr1	11561937	rs12144924	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:28:87:0.471:2	./.	0/1:37,14:30:51:0.275:2	./.
chr1	11562913	rs60362998	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,50:33:99:0.505:2	./.	0/1:41,29:33:70:0.414:2	./.
chr1	11579470	rs2072994	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,13:31:35:0.371:2	0/1:15,12:31:27:0.444:2	./.	0/1:0,55:30:55:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,58:30:58:1.00:2	0/1:35,29:31:64:0.453:2	./.	0/1:39,38:31:77:0.494:2	0/1:29,21:30:50:0.420:2	0/1:0,41:29:41:1.00:2
chr1	11579504	rs2072993	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	./.	0/1:44,30:31:74:0.405:2	./.	./.
chr1	11589705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:34:120:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11589911	rs2076468	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.	./.	0/1:38,62:32:100:0.620:2	./.	./.
chr1	11595642	rs200620988	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,41:31:98:0.418:2	./.	./.	./.
chr1	11596455	rs2594310	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.	0/1:15,18:32:33:0.545:2	./.
chr1	11710561	rs9614	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,22:28:41:0.537:2	0/1:12,18:29:30:0.600:2	0/1:7,8:29:15:0.533:2	./.	./.	./.	0/1:24,21:29:45:0.467:2	./.	0/1:27,40:30:67:0.597:2	./.	./.
chr1	11714368	rs2272983	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.
chr1	11718322	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,3:36:76:0.040:2	./.
chr1	11728866	rs138203471	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,31:28:73:0.425:2	./.
chr1	11728894	rs3125818	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.	0/1:49,45:32:94:0.479:2	0/1:46,41:31:87:0.471:2	./.
chr1	11728952	rs7514198	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,24:31:73:0.329:2	0/1:40,21:32:61:0.344:2	./.	./.	./.	./.
chr1	11733795	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:32:182:0.033:2
chr1	11737551	rs2233018	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:29:63:0.429:2	0/1:23,26:30:49:0.531:2	./.	./.	./.	./.
chr1	11740559	rs2233014	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.
chr1	11766424	rs11121804	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,34:32:69:0.493:2	0/1:13,16:32:29:0.552:2	./.	./.	0/1:59,49:31:108:0.454:2	./.	./.	0/1:3,141:31:144:0.979:2	./.	./.	./.
chr1	11769428	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2
chr1	11771988	rs17037327	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:33:66:0.500:2	./.	./.
chr1	11772491	rs76390929	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:32:44:0.432:2
chr1	11832289	rs61773952	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,98:31:179:0.547:2	0/1:76,76:32:152:0.500:2	./.	0/1:81,85:31:166:0.512:2
chr1	11832311	rs10779764	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,98:32:99:0.990:2	0/1:0,50:33:50:1.00:2	0/1:8,7:33:15:0.467:2	0/1:102,66:32:168:0.393:2	0/1:83,49:33:132:0.371:2	0/1:0,117:32:117:1.00:2	0/1:99,70:33:169:0.414:2	0/1:88,64:33:152:0.421:2	0/1:69,64:34:133:0.481:2	0/1:0,114:33:114:1.00:2	0/1:81,58:33:139:0.417:2
chr1	11835556	rs41275456	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:30:17:0.412:2	0/1:52,49:32:101:0.485:2	0/1:70,70:32:140:0.500:2	./.	./.	./.	./.	./.	./.
chr1	11836628	rs6699881	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:30:122:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,13:29:13:1.00:2	0/1:1,144:31:145:0.993:2	0/1:4,132:31:136:0.971:2	0/1:1,125:30:126:0.992:2	0/1:74,54:30:128:0.422:2	0/1:70,71:30:141:0.504:2	0/1:57,71:32:128:0.555:2	0/1:0,102:30:102:1.00:2	0/1:44,35:30:79:0.443:2
chr1	11836670	rs41275458	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,18:30:35:0.514:2	0/1:110,83:31:193:0.430:2	0/1:117,79:31:196:0.403:2	./.	./.	./.	./.	./.	./.
chr1	11836682	rs7538516	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,178:31:178:1.00:2	0/1:1,120:31:123:0.992:2	0/1:23,17:30:40:0.425:2	0/1:84,104:31:189:0.553:2	0/1:83,110:30:195:0.570:2	0/1:1,176:30:178:0.994:2	0/1:106,90:31:196:0.459:2	0/1:96,94:31:191:0.495:2	0/1:78,111:31:189:0.587:2	0/1:0,187:31:187:1.00:2	0/1:94,97:30:191:0.508:2
chr1	11838762	rs72640211	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:29:29:0.379:2	./.	0/1:117,75:29:192:0.391:2	./.	./.	./.	./.	./.	./.
chr1	11838841	rs56001051	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:31:19:0.526:2	0/1:77,70:32:147:0.476:2	0/1:86,77:32:163:0.472:2	./.	./.	./.	./.	./.	./.
chr1	11838848	rs6697244	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:31:111:1.00:2	0/1:0,63:31:63:1.00:2	0/1:11,7:30:18:0.389:2	0/1:69,74:30:143:0.517:2	0/1:71,79:29:150:0.527:2	0/1:1,127:30:128:0.992:2	0/1:87,72:31:159:0.453:2	0/1:89,72:31:161:0.447:2	0/1:73,80:32:153:0.523:2	0/1:0,97:30:97:1.00:2	0/1:63,49:31:112:0.438:2
chr1	11839009	rs55685198	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:29:8:0.500:2	0/1:32,16:28:48:0.333:2	0/1:28,16:28:44:0.364:2	./.	./.	./.	./.	./.	./.
chr1	11839033	rs55668272	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:31:29:0.586:2	./.	./.	./.	./.
chr1	11839034	rs55967531	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:30:9:0.667:2	0/1:41,29:31:70:0.414:2	0/1:26,18:27:44:0.409:2	./.	./.	./.	./.	./.	./.
chr1	11839923	rs12561919	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,35:32:75:0.467:2	0/1:45,29:31:74:0.392:2	./.	0/1:31,34:33:65:0.523:2	./.	./.	./.	./.
chr1	11839966	rs4846043	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,14:31:14:1.00:2	0/1:1,2:32:3:0.667:2	0/1:12,18:29:30:0.600:2	0/1:6,12:30:18:0.667:2	0/1:0,28:29:28:1.00:2	0/1:6,9:32:15:0.600:2	0/1:12,12:31:24:0.500:2	0/1:6,11:32:17:0.647:2	0/1:0,19:29:19:1.00:2	0/1:3,6:31:9:0.667:2
chr1	11839972	rs41275462	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2	0/1:8,6:32:14:0.429:2	./.	./.
chr1	11839998	rs4846044	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:30:21:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,14:30:14:1.00:2	0/1:4,10:31:14:0.714:2	0/1:0,20:27:20:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,7:30:7:1.00:2
chr1	11844330	rs10864543	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,32:32:32:1.00:2	0/1:4,9:32:13:0.692:2	0/1:46,42:32:88:0.477:2	0/1:35,55:32:90:0.611:2	0/1:0,82:31:82:1.00:2	0/1:55,30:31:85:0.353:2	0/1:42,54:33:96:0.563:2	0/1:43,53:32:96:0.552:2	0/1:0,72:32:72:1.00:2	0/1:40,56:33:96:0.583:2
chr1	11844520	rs41275466	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11845222	rs55867221	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:29:18:0.389:2	./.	./.	./.	./.	./.	./.
chr1	11847449	rs3737967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,22:31:39:0.564:2	./.	./.	./.	./.	./.	./.	./.
chr1	11848068	rs1537514	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:32:19:0.579:2	0/1:53,35:32:88:0.398:2	0/1:65,60:31:126:0.480:2	./.	./.	./.	./.	./.	./.
chr1	11849447	rs868014	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:28:64:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,12:30:12:1.00:2	0/1:1,47:29:48:0.979:2	0/1:0,43:29:43:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,31:29:31:1.00:2	0/1:1,50:28:51:0.980:2	0/1:1,48:29:49:0.980:2	0/1:0,53:30:53:1.00:2	0/1:0,55:29:55:1.00:2
chr1	11850750	rs35737219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,85:31:194:0.438:2	./.	./.	./.	./.
chr1	11850927	rs2274976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,76:31:155:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr1	11854457	rs4846051	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,33:32:33:1.00:2	0/1:1,64:31:65:0.985:2	0/1:0,49:32:49:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,70:31:70:1.00:2
chr1	11854476	rs1801131	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:33:13:0.385:2	0/1:34,38:33:72:0.528:2	0/1:27,25:33:52:0.481:2	./.	0/1:29,29:32:58:0.500:2	0/1:38,33:33:71:0.465:2	./.	./.	0/1:41,48:32:89:0.539:2
chr1	11854819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.
chr1	11854896	rs2066462	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:42,24:31:66:0.364:2	0/1:25,31:30:56:0.554:2	./.	./.	./.	./.	./.	./.
chr1	11856378	rs1801133	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,23:31:54:0.426:2	0/1:13,17:31:30:0.567:2	./.	0/1:47,36:31:83:0.434:2	0/1:57,55:30:112:0.491:2	0/1:56,43:30:100:0.434:2	0/1:56,49:30:105:0.467:2	0/1:53,42:30:95:0.442:2	0/1:48,38:31:86:0.442:2	0/1:0,73:30:73:1.00:2	0/1:31,30:29:61:0.492:2
chr1	11863057	rs2066470	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	0/1:34,36:32:70:0.514:2	0/1:35,22:30:57:0.386:2	./.	./.	./.	./.	./.	./.
chr1	11875979	rs146547070	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,24:31:48:0.500:2	./.	./.	./.	./.	./.	./.
chr1	11876662	rs17376328	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	0/1:74,69:30:143:0.483:2	./.	./.	./.	./.	./.	./.
chr1	11884555	rs198400	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,73:33:74:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,52:32:52:1.00:2
chr1	11884619	rs41275474	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,27:32:69:0.391:2	./.	./.	./.	./.
chr1	11887181	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:35:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11896141	rs41275498	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,97:31:185:0.524:2	./.	./.
chr1	11897082	rs41275500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,24:30:38:0.632:2	./.	./.	./.	./.	./.	./.	./.
chr1	11898789	rs2272803	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,45:32:71:0.634:2	./.	./.	./.	./.	./.	./.	./.
chr1	11898849	rs198409	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,55:30:102:0.539:2	./.	./.	./.	./.
chr1	11898859	rs55741089	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:28:16:0.563:2	./.	0/1:48,50:28:98:0.510:2	./.	./.	./.	./.	./.	./.
chr1	11899033	rs1023252	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:30:8:0.375:2	0/1:30,22:29:52:0.423:2	0/1:38,25:30:63:0.397:2	./.	./.	0/1:41,29:30:70:0.414:2	0/1:30,21:31:51:0.412:2	./.	0/1:37,34:30:71:0.479:2
chr1	11906068	rs5065	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,73:29:150:0.487:2	./.	./.	./.	./.
chr1	11907648	rs5063	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,74:31:146:0.507:2	./.	./.	./.	./.	./.	./.	./.
chr1	11918444	rs61761991	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:32:41:0.512:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11918519	rs5229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.
chr1	11982703	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:157,5:33:162:0.031:2	./.	./.	0/1:173,5:32:178:0.028:2	./.	./.	./.	./.	./.	./.	0/1:168,7:32:175:0.040:2
chr1	11982828	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr1	11983041	rs33910280	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,82:30:176:0.466:2	./.	./.	./.	./.
chr1	11983206	rs3795408	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:133,4:32:137:0.029:2	0/1:0,35:31:35:1.00:2	0/1:90,86:31:176:0.489:2	0/1:105,79:31:184:0.429:2	0/1:109,67:30:176:0.381:2	0/1:85,97:31:182:0.533:2	0/1:1,173:31:174:0.994:2	0/1:107,86:31:193:0.446:2	0/1:85,75:31:160:0.469:2	./.
chr1	11985323	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,3:35:96:0.031:2	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11985396	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:160,26:32:188:0.140:2	0/1:99,11:32:110:0.100:2	./.	0/1:183,12:31:195:0.062:2	0/1:184,7:30:191:0.037:2	./.	0/1:180,16:31:196:0.082:2	./.	0/1:178,19:30:197:0.096:2	0/1:179,8:30:187:0.043:2	0/1:164,19:30:184:0.104:2
chr1	12009955	rs7529452	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:42,32:32:74:0.432:2	0/1:22,22:29:44:0.500:2	./.	0/1:30,32:31:62:0.516:2	0/1:21,26:32:47:0.553:2	./.	./.
chr1	12009956	rs7551175	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,16:30:51:0.314:2	./.	./.	./.	./.	./.	0/1:19,30:31:49:0.612:2	./.
chr1	12010469	rs2273285	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,30:31:54:0.556:2	./.	./.	./.	./.	./.	0/1:29,26:30:55:0.473:2	./.
chr1	12024235	rs1130529	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:32,42:31:74:0.568:2	0/1:32,43:31:75:0.573:2	./.	0/1:32,21:29:53:0.396:2	0/1:17,29:32:46:0.630:2	./.	./.
chr1	12026355	rs2230898	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,21:29:48:0.438:2	./.	./.	./.	./.	./.	0/1:12,13:30:25:0.520:2	./.
chr1	12032959	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2
chr1	12052647	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,61:28:144:0.424:2	0/1:52,33:27:85:0.388:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12065841	rs1042837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,84:32:171:0.491:2	./.
chr1	12082334	rs11553925	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:51,27:29:78:0.346:2	./.	0/1:22,27:30:49:0.551:2	./.	./.	0/1:0,44:30:44:1.00:2	./.
chr1	12082461	rs11588712	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:33:11:0.636:2	./.	0/1:57,53:32:110:0.482:2	./.	./.	./.	./.	0/1:35,34:32:69:0.493:2	./.
chr1	12082881	rs11588779	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:33:15:0.400:2	./.	0/1:73,52:31:125:0.416:2	./.	0/1:73,45:32:118:0.381:2	./.	./.	0/1:0,70:33:70:1.00:2	./.
chr1	12082926	rs2295283	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:33:14:1.00:2	0/1:52,48:33:100:0.480:2	0/1:2,139:33:141:0.986:2	0/1:52,53:33:105:0.505:2	0/1:87,59:33:146:0.404:2	0/1:87,62:33:149:0.416:2	0/1:0,111:34:111:1.00:2	0/1:0,61:33:61:1.00:2	0/1:57,30:33:87:0.345:2
chr1	12089348	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:35:56:0.071:2	./.	./.
chr1	12164437	rs2230622	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,38:32:71:0.535:2	0/1:20,23:31:43:0.535:2	./.	0/1:67,53:30:120:0.442:2	0/1:62,60:30:122:0.492:2	0/1:36,80:30:116:0.690:2	./.	./.	0/1:40,38:32:78:0.487:2	./.	./.
chr1	12175700	rs147298360	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,3:35:82:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12175729	rs1763642	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,68:32:69:1.00:2
chr1	12198297	rs476488	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,32:29:62:0.525:2	./.	./.	./.
chr1	12248942	rs945439	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:30:23:0.304:2	0/1:16,9:30:25:0.360:2	./.	0/1:12,6:30:18:0.333:2	./.	./.	./.	./.
chr1	12252955	rs1061622	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:33:43:0.535:2	0/1:35,26:32:61:0.426:2	./.	0/1:48,32:33:80:0.400:2	./.	./.	./.	./.
chr1	12322081	rs140107975	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,54:34:94:0.574:2	./.	./.
chr1	12336147	rs7546794	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,59:32:138:0.428:2	./.	./.	./.	./.	./.	./.
chr1	12339619	rs4845898	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,66:29:121:0.545:2	0/1:40,31:30:71:0.437:2	./.	./.	./.	./.	0/1:0,96:29:96:1.00:2	./.
chr1	12343631	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12371873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,6:32:178:0.034:2
chr1	12371888	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12379643	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	12382751	rs35102018	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	0/1:38,54:31:92:0.587:2	./.	./.	./.
chr1	12389953	rs79566132	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	./.	./.	./.	./.	./.	./.
chr1	12401868	rs28551666	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,11:33:19:0.579:2	0/1:12,7:32:19:0.368:2	./.	0/1:0,23:33:23:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:13,21:33:34:0.618:2	0/1:0,36:32:36:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,30:33:30:1.00:2
chr1	12401880	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:30:24:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr1	12406664	rs41279460	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,62:31:140:0.443:2	./.	./.	./.	./.	./.	0/1:46,53:31:99:0.535:2	./.
chr1	12429611	rs2295338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,28:32:80:0.350:2	./.	./.	./.	./.
chr1	12446314	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.
chr1	12568964	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2
chr1	12628459	rs11121940	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:32:103:0.466:2	./.
chr1	12638964	rs2275875	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:28:44:1.00:2	0/1:0,38:27:38:1.00:2	./.	0/1:1,75:26:76:0.987:2	0/1:41,51:27:92:0.554:2	0/1:0,67:27:68:1.00:2	0/1:0,70:28:70:1.00:2	0/1:29,62:27:91:0.681:2	0/1:0,46:27:46:1.00:2	0/1:0,61:27:61:1.00:2	0/1:0,45:27:45:1.00:2
chr1	12640650	rs11540058	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,21:33:55:0.382:2	./.	./.	0/1:29,36:32:65:0.554:2	./.	./.	./.	0/1:37,39:33:76:0.513:2
chr1	12776344	rs3000859	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:2,167:32:169:0.988:2	0/1:0,30:31:30:1.00:2	0/1:0,172:32:172:1.00:2	0/1:113,71:32:184:0.386:2	0/1:0,172:32:172:1.00:2	./.	0/1:2,184:32:186:0.989:2	0/1:99,87:33:186:0.468:2	0/1:104,82:32:186:0.441:2	0/1:1,165:32:166:0.994:2
chr1	12779560	rs3010876	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:31:90:1.00:2	0/1:0,61:31:61:1.00:2	0/1:19,5:32:24:0.208:2	0/1:87,51:32:138:0.370:2	0/1:47,50:31:97:0.515:2	0/1:1,86:32:87:0.989:2	0/1:0,95:32:95:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,97:32:97:1.00:2	./.	0/1:0,102:32:102:1.00:2
chr1	12779563	rs201816325	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:32:24:0.208:2	./.	./.	./.	./.	./.	0/1:56,45:34:101:0.446:2	./.	./.
chr1	12779618	rs3010877	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,49:31:49:1.00:2	0/1:14,4:32:18:0.222:2	0/1:69,39:31:108:0.361:2	0/1:54,54:32:108:0.500:2	0/1:1,102:32:103:0.990:2	0/1:0,82:32:82:1.00:2	0/1:2,102:32:104:0.981:2	0/1:0,80:33:80:1.00:2	./.	0/1:0,103:32:103:1.00:2
chr1	12785494	rs7513079	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:12,6:31:18:0.333:2	0/1:8,13:31:21:0.619:2	0/1:0,10:29:10:1.00:2	0/1:0,16:31:16:1.00:2	0/1:8,9:32:17:0.529:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,20:31:20:1.00:2
chr1	12785749	rs11121969	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,60:32:127:0.472:2	./.	./.	./.
chr1	12819368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:108:0.038:2	./.	./.	./.
chr1	12820870	rs1132185	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,20:33:20:1.00:2	./.	0/1:29,32:33:61:0.525:2	0/1:40,33:32:73:0.452:2	0/1:1,56:32:57:0.982:2	0/1:0,71:32:71:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,63:33:63:1.00:2	./.	0/1:0,54:33:55:1.00:2
chr1	12835158	rs77870074	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,56:31:136:0.412:2	./.	./.	./.	./.	0/1:89,68:32:157:0.433:2	./.	./.
chr1	12835168	rs17346571	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,60:31:141:0.426:2	./.	./.	./.	./.	0/1:89,63:32:152:0.414:2	./.	./.
chr1	12835868	rs1812242	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,185:30:185:1.00:2	0/1:0,133:30:133:1.00:2	0/1:8,18:30:26:0.692:2	./.	0/1:0,166:30:166:1.00:2	0/1:0,191:30:191:1.00:2	0/1:0,174:30:174:1.00:2	0/1:90,104:30:194:0.536:2	0/1:116,76:31:192:0.396:2	0/1:96,95:30:191:0.497:2	0/1:0,186:30:186:1.00:2
chr1	12835891	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:32:189:0.032:2	./.	./.	./.
chr1	12835929	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.
chr1	12835994	rs145223711	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,82:32:191:0.429:2	./.	./.
chr1	12837376	rs202096976	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,5:32:142:0.035:2	./.	./.	./.	./.	0/1:149,6:33:155:0.039:2	./.	./.
chr1	12837463	rs112368379	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.	0/1:84,52:31:136:0.382:2	./.	./.	./.	./.
chr1	12837469	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,5:32:156:0.032:2	./.	./.	./.	./.	./.	./.
chr1	12837471	rs79193271	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,40:32:191:0.209:2	./.	./.	./.	./.	0/1:150,42:32:192:0.219:2	./.	./.
chr1	12837475	rs78132363	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,38:31:187:0.203:2	./.	./.	./.	./.	0/1:148,40:33:188:0.213:2	./.	./.
chr1	12837547	rs200191720	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,7:32:191:0.037:2	./.	./.	./.	./.	./.	./.
chr1	12837548	rs202100778	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,7:31:191:0.037:2	./.	./.	./.	./.	./.	./.
chr1	12837619	rs199506940	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:33:157:0.032:2	./.	./.
chr1	12837634	rs848578	T	A,C	.	PASS	AC=9,1;AF=0.300,0.033;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/1:30:175:0.989:2	0/1:31:137:0.993:2	0/1:30:28:0.750:2	0/2:29:146:0.034:2	0/1:30:179:1.00:2	0/1:30:181:0.989:2	0/1:30:183:0.995:2	0/1:30:188:0.455:2	./.	0/1:30:186:0.478:2	0/1:31:179:1.00:2
chr1	12837652	rs200113689	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.
chr1	12837720	rs201425552	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,17:30:111:0.153:2	./.	./.	./.	./.	0/1:101,14:30:115:0.122:2	./.	./.
chr1	12837728	rs77317880	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,18:31:104:0.173:2	./.	./.	./.	./.	0/1:94,14:30:109:0.130:2	./.	./.
chr1	12853403	rs1737157	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,50:32:50:1.00:2	0/1:72,23:31:95:0.242:2	./.	0/1:136,6:32:142:0.042:2	0/1:3,32:33:35:0.914:2	0/1:46,34:33:80:0.425:2	0/1:53,45:32:98:0.459:2
chr1	12853415	rs74459295	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	0/1:159,7:30:166:0.042:2	0/1:40,4:31:44:0.091:2	./.	0/1:111,7:28:118:0.059:2
chr1	12854068	rs79492089	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,13:30:83:0.163:2	./.
chr1	12854090	rs79698223	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,7:31:78:0.090:2	0/1:54,7:32:61:0.115:2	./.	0/1:51,9:31:60:0.150:2	0/1:84,5:24:89:0.056:2	0/1:85,15:29:100:0.150:2	0/1:75,5:28:80:0.063:2	0/1:117,10:29:127:0.079:2	0/1:89,10:32:99:0.101:2	0/1:108,9:30:117:0.077:2	0/1:117,12:30:130:0.093:2
chr1	12854097	rs76193255	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,11:29:84:0.131:2	0/1:55,7:25:62:0.113:2	./.	0/1:62,16:29:78:0.205:2	0/1:89,5:27:94:0.053:2	0/1:92,18:30:110:0.164:2	0/1:83,5:29:88:0.057:2	0/1:124,10:29:134:0.075:2	0/1:95,13:30:108:0.120:2	0/1:118,9:29:128:0.071:2	0/1:123,12:29:135:0.089:2
chr1	12854105	rs76648802	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,11:32:88:0.125:2	0/1:59,7:31:66:0.106:2	./.	0/1:65,16:31:81:0.198:2	0/1:97,8:30:105:0.076:2	0/1:99,19:30:118:0.161:2	0/1:84,5:30:89:0.056:2	0/1:134,10:31:144:0.069:2	0/1:100,14:30:114:0.123:2	0/1:127,10:31:137:0.073:2	0/1:130,18:31:148:0.122:2
chr1	12854139	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:33:112:0.036:2	./.	./.	./.	0/1:97,6:33:103:0.058:2	./.	./.
chr1	12854140	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	0/1:98,6:33:104:0.058:2	./.	./.
chr1	12854162	rs199893374	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,15:32:115:0.130:2	./.	0/1:11,4:31:15:0.267:2	0/1:76,15:30:91:0.165:2	0/1:80,5:28:85:0.059:2	0/1:119,7:30:126:0.056:2	./.	./.	0/1:57,22:33:79:0.278:2	0/1:114,22:32:136:0.162:2	0/1:110,16:31:127:0.127:2
chr1	12854188	rs76030350	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,17:29:121:0.140:2	./.	0/1:10,3:31:13:0.231:2	0/1:57,14:31:71:0.197:2	0/1:67,13:29:80:0.163:2	0/1:91,14:28:105:0.133:2	./.	0/1:100,11:31:111:0.099:2	0/1:55,18:31:73:0.247:2	0/1:93,24:29:118:0.205:2	0/1:96,19:29:115:0.165:2
chr1	12854272	rs61775050	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,20:31:84:0.238:2	./.	./.	./.	./.
chr1	12854280	rs2790782	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	0/1:176,6:30:182:0.033:2	./.
chr1	12854356	rs61775051	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,24:33:186:0.129:2	0/1:108,14:33:122:0.115:2	0/1:17,13:31:30:0.433:2	0/1:88,60:32:149:0.405:2	0/1:94,65:31:159:0.409:2	0/1:157,21:31:178:0.118:2	0/1:123,39:33:162:0.241:2	0/1:158,28:32:186:0.151:2	0/1:72,93:33:165:0.564:2	0/1:135,54:32:190:0.286:2	0/1:162,24:32:186:0.129:2
chr1	12854370	rs372514136	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:173,15:31:188:0.080:2	0/1:122,8:30:130:0.062:2	0/1:37,4:33:41:0.098:2	./.	./.	0/1:179,12:31:191:0.063:2	0/1:181,7:32:188:0.037:2	0/1:182,9:32:191:0.047:2	0/1:170,7:32:177:0.040:2	0/1:176,18:30:194:0.093:2	0/1:170,15:29:185:0.081:2
chr1	12854401	rs201717831	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:162,9:31:172:0.053:2	0/1:130,7:30:139:0.051:2	./.	0/1:167,6:30:173:0.035:2	./.	0/1:169,12:30:183:0.066:2	0/1:183,10:30:193:0.052:2	0/1:184,7:30:193:0.037:2	./.	0/1:169,13:31:185:0.071:2	0/1:177,8:32:186:0.043:2
chr1	12854414	rs1063769	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:168,11:31:179:0.061:2	0/1:131,9:32:140:0.064:2	0/1:44,16:31:60:0.267:2	0/1:104,67:31:171:0.392:2	0/1:99,79:31:178:0.444:2	0/1:166,20:31:187:0.108:2	0/1:140,50:32:190:0.263:2	0/1:175,11:32:187:0.059:2	0/1:64,87:32:151:0.576:2	0/1:130,55:31:185:0.297:2	0/1:176,11:31:187:0.059:2
chr1	12854428	rs1769774	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,90:31:172:0.523:2	0/1:105,70:31:175:0.400:2	./.	./.	0/1:95,58:32:153:0.379:2	0/1:108,72:31:180:0.400:2	0/1:110,64:32:174:0.368:2
chr1	12854474	rs1063774	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:160,6:28:166:0.036:2	0/1:122,4:32:126:0.032:2	./.	0/1:108,26:32:134:0.194:2	0/1:115,24:31:139:0.173:2	0/1:158,14:31:172:0.081:2	0/1:147,20:31:167:0.120:2	./.	0/1:140,11:34:151:0.073:2	0/1:142,24:33:166:0.145:2	0/1:176,10:31:186:0.054:2
chr1	12854479	rs1063775	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:157,6:32:163:0.037:2	0/1:128,4:31:132:0.030:2	./.	0/1:111,20:32:132:0.153:2	0/1:117,20:31:137:0.146:2	0/1:160,12:30:172:0.070:2	0/1:156,18:32:174:0.103:2	./.	0/1:143,9:31:152:0.059:2	0/1:149,19:31:168:0.113:2	0/1:180,10:32:191:0.053:2
chr1	12854510	rs76932259	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,10:33:130:0.077:2	0/1:154,6:31:160:0.038:2	./.	./.	./.	./.	0/1:187,7:31:194:0.036:2	0/1:189,5:32:194:0.026:2
chr1	12854530	rs1063776	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,176:30:177:0.994:2	0/1:0,126:30:126:1.00:2	0/1:9,18:30:27:0.667:2	./.	0/1:0,163:30:163:1.00:2	0/1:0,195:29:195:1.00:2	0/1:0,169:30:169:1.00:2	0/1:3,173:30:176:0.983:2	0/1:0,156:31:156:1.00:2	0/1:89,102:30:191:0.534:2	0/1:0,181:30:181:1.00:2
chr1	12854544	rs1063778	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,168:29:174:0.971:2	0/1:91,95:29:186:0.511:2	./.	./.	0/1:3,144:30:147:0.980:2	0/1:90,99:30:189:0.524:2	0/1:108,76:29:184:0.413:2
chr1	12854545	rs1063779	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:29:152:0.039:2	./.	./.
chr1	12855004	rs200225858	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,33:31:182:0.183:2	0/1:150,40:31:190:0.211:2	0/1:69,19:31:88:0.216:2	0/1:155,27:31:182:0.148:2	./.	0/1:168,27:31:195:0.138:2	./.	0/1:178,18:31:196:0.092:2	0/1:105,53:32:159:0.335:2	0/1:140,44:32:184:0.239:2	0/1:146,44:31:192:0.232:2
chr1	12855013	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,11:33:160:0.069:2	./.	./.
chr1	12855035	rs200453580	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,18:33:173:0.104:2	./.	./.
chr1	12855077	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,12:27:177:0.068:2	./.	./.
chr1	12855088	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.	./.	./.	./.	./.
chr1	12855644	rs5003729	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,18:32:169:0.107:2	0/1:86,12:32:98:0.122:2	0/1:16,3:32:19:0.158:2	0/1:129,11:31:140:0.079:2	./.	0/1:159,29:31:188:0.154:2	0/1:110,21:31:131:0.160:2	0/1:155,28:30:183:0.153:2	0/1:122,17:29:139:0.122:2	0/1:148,33:32:181:0.182:2	0/1:158,21:32:179:0.117:2
chr1	12855647	rs200536957	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:145,18:31:163:0.110:2	0/1:86,12:31:98:0.122:2	./.	0/1:131,11:29:142:0.077:2	./.	0/1:158,29:30:187:0.155:2	0/1:110,21:30:131:0.160:2	0/1:154,28:31:182:0.154:2	0/1:122,15:29:138:0.109:2	0/1:147,32:32:179:0.179:2	0/1:159,21:30:180:0.117:2
chr1	12855648	rs200816125	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,18:32:161:0.112:2	0/1:85,12:32:97:0.124:2	0/1:15,3:31:18:0.167:2	0/1:130,12:30:143:0.085:2	./.	0/1:158,29:31:187:0.155:2	0/1:113,21:32:134:0.157:2	0/1:154,28:31:182:0.154:2	0/1:121,16:30:138:0.117:2	0/1:146,32:32:178:0.180:2	0/1:158,21:30:179:0.117:2
chr1	12855661	rs202131735	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	12855667	rs200190132	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,11:30:163:0.068:2	./.	./.
chr1	12855706	rs147917136	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,14:30:139:0.101:2	./.	./.	./.	./.	0/1:169,5:33:174:0.029:2	./.	./.
chr1	12855720	rs113708906	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,74:31:175:0.423:2	./.	./.	./.	./.	0/1:117,71:33:188:0.378:2	./.
chr1	12855740	rs146268837	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,27:32:173:0.156:2	./.	./.
chr1	12855752	rs80197258	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,5:27:148:0.034:2	./.	./.	./.	./.	./.	0/1:190,5:28:195:0.026:2	./.
chr1	12855759	rs137973987	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	12855774	rs75985223	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,8:24:144:0.056:2	./.	./.	./.	./.	0/1:142,22:29:164:0.134:2	0/1:180,7:27:187:0.037:2	./.
chr1	12855835	rs1063795	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,166:32:166:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,127:32:127:1.00:2	0/1:1,128:32:129:0.992:2	0/1:0,149:32:150:1.00:2	0/1:0,80:32:81:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,138:31:138:1.00:2
chr1	12855844	rs141509525	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:31:74:0.068:2	./.	./.
chr1	12855845	rs1063797	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:33:155:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,129:33:129:1.00:2
chr1	12855876	rs76778387	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,18:27:131:0.137:2	./.	./.	./.	./.	0/1:73,10:29:83:0.120:2	./.	./.
chr1	12855878	rs1052908	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,42:32:49:0.857:2	0/1:104,35:32:139:0.252:2	./.	./.	0/1:50,29:32:79:0.367:2	0/1:106,27:32:133:0.203:2	0/1:108,30:33:138:0.217:2
chr1	12855893	rs77615669	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,26:30:135:0.193:2	./.	./.	./.	./.	0/1:41,45:32:86:0.523:2	0/1:132,7:30:139:0.050:2	./.
chr1	12855895	rs200548257	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.
chr1	12855896	rs201337684	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.
chr1	12855898	rs76032448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,32:31:92:0.348:2	./.	./.
chr1	12855934	rs150054541	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,22:30:145:0.152:2	./.	./.	./.	./.	0/1:143,10:32:153:0.065:2	./.	./.
chr1	12855954	rs200506341	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,6:33:148:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	12855962	rs149187716	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,31:31:181:0.172:2	./.	./.
chr1	12855990	rs199886880	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,13:30:179:0.073:2	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.
chr1	12855995	rs201353254	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,12:29:180:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr1	12855996	rs138590692	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,11:32:179:0.061:2	./.	0/1:159,32:29:191:0.168:2	./.	./.	./.	./.	./.
chr1	12856010	rs61775053	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,54:32:188:0.287:2	0/1:132,57:32:189:0.302:2	0/1:35,6:33:41:0.146:2	0/1:134,47:33:181:0.260:2	0/1:192,4:32:196:0.020:2	0/1:127,62:32:189:0.328:2	0/1:110,77:32:187:0.412:2	0/1:109,86:32:195:0.441:2	0/1:103,80:33:183:0.437:2	0/1:155,35:32:191:0.184:2	0/1:110,76:32:187:0.409:2
chr1	12856015	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.
chr1	12856079	rs142994008	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.	./.	./.	0/1:154,29:31:183:0.158:2	./.
chr1	12856087	rs141070565	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,55:32:193:0.285:2	0/1:136,46:31:182:0.253:2	./.	./.	0/1:165,31:32:196:0.158:2	./.	./.
chr1	12856105	rs146835774	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,31:32:180:0.172:2	0/1:155,34:32:189:0.180:2	./.	./.	./.	./.	./.	./.
chr1	12856106	rs145309716	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,43:29:172:0.250:2	./.	./.	./.	./.	0/1:143,42:29:185:0.227:2	./.	./.
chr1	12856111	rs61775054	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,49:32:188:0.261:2	0/1:107,40:32:147:0.272:2	0/1:25,11:33:36:0.306:2	0/1:107,63:32:170:0.371:2	0/1:146,36:31:183:0.198:2	0/1:117,53:32:170:0.312:2	0/1:121,55:32:176:0.313:2	0/1:115,77:33:192:0.401:2	0/1:140,43:34:183:0.235:2	0/1:101,79:33:180:0.439:2	0/1:115,74:32:189:0.392:2
chr1	12856146	rs1974302	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,37:31:105:0.352:2	0/1:90,23:32:113:0.204:2	./.	./.	0/1:105,15:34:120:0.125:2	0/1:105,27:32:132:0.205:2	0/1:120,22:33:143:0.155:2
chr1	12884977	rs2994112	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,5:32:168:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	12884981	rs4989318	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,68:28:133:0.511:2	./.	./.	./.	0/1:4,124:29:128:0.969:2	./.	./.
chr1	12884997	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:32:139:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr1	12885003	rs4990293	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,5:31:126:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	12885127	rs201757978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.
chr1	12885168	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:33:21:0.143:2	./.	./.	./.
chr1	12885200	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.
chr1	12907282	rs139731855	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,10:30:59:0.169:2	0/1:71,4:30:75:0.053:2	0/1:104,7:31:111:0.063:2	./.	0/1:117,8:25:126:0.064:2	./.	0/1:105,6:27:111:0.054:2	0/1:91,7:27:98:0.071:2
chr1	12907284	rs149796618	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,10:32:58:0.172:2	0/1:70,5:32:75:0.067:2	0/1:105,9:31:114:0.079:2	./.	0/1:115,9:26:124:0.073:2	0/1:109,4:32:113:0.035:2	0/1:104,6:31:110:0.055:2	0/1:88,7:31:96:0.074:2
chr1	12907285	rs148930640	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,10:32:57:0.175:2	0/1:72,4:31:76:0.053:2	0/1:105,7:32:113:0.063:2	./.	0/1:114,8:31:124:0.066:2	./.	0/1:104,6:31:110:0.055:2	0/1:88,7:30:96:0.074:2
chr1	12907316	rs112607517	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2
chr1	12907379	rs74055698	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,28:31:68:0.412:2	0/1:53,46:32:99:0.465:2	./.	./.	0/1:3,99:32:102:0.971:2	./.	./.
chr1	12907449	rs78163065	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,50:33:159:0.314:2	./.	./.
chr1	12907496	rs138700801	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,16:34:112:0.143:2	./.	./.
chr1	12907519	rs6702447	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,11:31:131:0.084:2	./.
chr1	12907533	rs141872266	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,15:33:94:0.160:2	./.	./.
chr1	12907620	rs2994092	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:35:57:0.053:2	./.
chr1	12907633	rs75660350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,32:32:86:0.372:2	./.	./.
chr1	12907742	rs150671203	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,7:32:140:0.050:2	./.	./.
chr1	12907762	rs57026768	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,35:29:130:0.269:2	./.	./.
chr1	12907777	rs28391533	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,12:34:92:0.130:2	./.	./.	./.	./.	0/1:78,43:32:121:0.355:2	./.	./.
chr1	12907829	rs74866336	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,38:32:148:0.257:2
chr1	12907837	rs1736811	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,35:33:154:0.227:2	0/1:74,22:32:96:0.229:2	0/1:12,7:32:19:0.368:2	0/1:92,54:31:146:0.370:2	0/1:96,44:32:140:0.314:2	0/1:128,27:32:155:0.174:2	0/1:133,35:31:168:0.208:2	0/1:58,100:32:158:0.633:2	0/1:96,61:33:157:0.389:2	0/1:89,63:33:152:0.414:2	0/1:99,47:33:147:0.322:2
chr1	12907843	rs2982093	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:140,13:28:153:0.085:2	./.	./.	./.	0/1:155,8:29:163:0.049:2	./.	./.
chr1	12907848	rs140567799	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,8:33:165:0.048:2	./.	./.
chr1	12907885	rs848418	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:66,78:29:144:0.542:2	0/1:36,48:28:84:0.571:2	0/1:14,14:29:28:0.500:2	./.	0/1:73,76:29:149:0.510:2	0/1:59,70:30:130:0.543:2	0/1:73,70:29:143:0.490:2	0/1:143,32:28:175:0.183:2	0/1:123,42:30:165:0.255:2	0/1:104,58:28:162:0.358:2	0/1:85,58:28:143:0.406:2
chr1	12908080	rs41279490	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,30:32:196:0.153:2	./.	./.
chr1	12908130	rs41279492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,34:31:196:0.173:2	./.	./.
chr1	12908234	rs12568448	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,20:31:68:0.294:2	0/1:64,15:31:79:0.190:2	./.	./.	0/1:44,25:32:69:0.362:2	./.	./.
chr1	12908236	rs1736809	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,32:32:91:0.352:2	0/1:31,23:31:54:0.426:2	0/1:11,6:32:17:0.353:2	0/1:46,67:32:113:0.593:2	0/1:44,19:32:63:0.302:2	0/1:33,39:31:72:0.542:2	0/1:23,37:32:60:0.617:2	0/1:47,34:32:81:0.420:2	0/1:27,38:32:65:0.585:2	0/1:45,53:32:98:0.541:2	0/1:73,63:32:136:0.463:2
chr1	12918891	rs77229081	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,69:32:121:0.570:2	./.	./.
chr1	12918963	rs9661554	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,99:31:190:0.521:2	0/1:85,93:31:178:0.522:2	./.	./.	0/1:81,94:32:176:0.537:2	./.	./.
chr1	12919064	rs3204790	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,6:34:82:0.073:2	0/1:60,60:32:120:0.500:2	0/1:83,60:31:143:0.420:2	./.	./.	0/1:0,147:32:147:1.00:2	./.	./.
chr1	12919068	rs3204791	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,9:32:86:0.105:2	./.	./.	./.	./.	0/1:139,11:30:150:0.073:2	./.	./.
chr1	12919079	rs9659529	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,45:32:97:0.464:2	0/1:77,60:32:137:0.438:2	./.	./.	0/1:70,69:33:139:0.496:2	./.	./.
chr1	12919081	rs45443899	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:31:87:0.460:2
chr1	12919095	rs116865587	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,17:30:79:0.215:2	./.	./.	./.	./.	0/1:105,17:29:122:0.139:2	./.	./.
chr1	12919111	rs9728577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,41:32:105:0.390:2	./.	./.
chr1	12919587	rs17400817	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,19:29:60:0.317:2	0/1:49,37:30:86:0.430:2	./.	./.	0/1:85,25:30:110:0.227:2	./.	0/1:65,59:30:124:0.476:2
chr1	12919623	rs75838083	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,32:30:84:0.381:2	0/1:58,72:32:130:0.554:2	./.	./.	0/1:96,51:32:147:0.347:2	./.	./.
chr1	12919624	rs80027487	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,32:31:85:0.376:2	0/1:59,72:32:131:0.550:2	./.	./.	0/1:98,51:32:149:0.342:2	./.	./.
chr1	12919756	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.
chr1	12919770	rs201702646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr1	12919833	rs150145103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:29:49:0.082:2	./.	./.	./.	./.	./.	./.
chr1	12919840	rs371798387	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.
chr1	12919872	rs3204798	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:32:73:0.466:2	./.	./.
chr1	12919891	rs75411676	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:30:63:0.524:2	./.	./.
chr1	12919928	rs72472698	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,32:32:55:0.582:2	0/1:46,35:32:81:0.432:2	./.	./.	0/1:38,19:32:57:0.333:2	./.	./.
chr1	12919934	rs3204805	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,27:31:52:0.519:2	0/1:48,32:31:80:0.400:2	./.	./.	0/1:1,57:33:58:0.983:2	./.	./.
chr1	12919963	rs72472699	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,6:32:54:0.111:2	0/1:33,39:32:72:0.542:2	0/1:48,43:32:92:0.473:2	./.	./.	0/1:53,29:32:83:0.354:2	./.	./.
chr1	12919983	rs77138000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,57:32:129:0.442:2
chr1	12919994	rs115914708	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr1	12920067	rs17038709	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,37:31:88:0.420:2	0/1:76,66:33:142:0.465:2	./.	./.	0/1:85,72:33:157:0.459:2	./.	./.
chr1	12921110	rs12139546	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,17:32:40:0.425:2	0/1:17,23:32:40:0.575:2	./.	./.	0/1:48,12:33:60:0.200:2	./.	./.
chr1	12921114	rs17404799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,5:32:61:0.082:2	./.	./.
chr1	12921119	rs17404806	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.
chr1	12921127	rs12139549	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,21:32:44:0.477:2	0/1:22,30:32:52:0.577:2	./.	./.	0/1:1,55:33:56:0.982:2	./.	0/1:33,43:32:76:0.566:2
chr1	12921132	rs12139550	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,23:32:46:0.500:2	0/1:24,33:31:57:0.579:2	./.	./.	0/1:43,17:33:60:0.283:2	./.	./.
chr1	12921156	rs17039293	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.
chr1	12921229	rs1063789	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,5:29:137:0.036:2	./.	./.	./.	0/1:122,6:29:128:0.047:2	./.	./.
chr1	12921241	rs199970071	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,8:34:130:0.062:2	./.	./.
chr1	12921311	rs78050948	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,6:28:130:0.046:2	./.	./.	./.	./.	0/1:149,5:29:155:0.032:2	./.	./.
chr1	12921332	rs17039307	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,17:29:170:0.101:2	0/1:111,8:31:119:0.067:2	0/1:24,3:30:27:0.111:2	0/1:130,9:31:139:0.065:2	0/1:65,84:31:149:0.564:2	0/1:64,109:31:173:0.630:2	0/1:103,17:31:120:0.142:2	0/1:165,18:29:183:0.098:2	0/1:17,133:32:150:0.887:2	0/1:142,20:31:162:0.123:2	0/1:83,98:32:181:0.541:2
chr1	12921333	rs56145411	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,46:30:149:0.309:2	0/1:102,74:31:176:0.420:2	0/1:117,4:31:121:0.033:2	./.	0/1:49,101:32:150:0.673:2	./.	0/1:110,71:31:181:0.392:2
chr1	12921365	rs200771429	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,23:30:125:0.185:2	./.	./.	./.	./.	0/1:158,10:29:168:0.060:2	./.	./.
chr1	12921367	rs113192325	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:163,16:29:179:0.089:2	0/1:109,8:32:117:0.068:2	./.	0/1:97,30:31:127:0.236:2	./.	0/1:183,5:29:188:0.027:2	0/1:101,14:30:115:0.122:2	0/1:169,17:31:186:0.091:2	0/1:158,10:30:168:0.060:2	./.	0/1:175,5:33:180:0.028:2
chr1	12921382	rs200446855	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,23:32:128:0.180:2	./.	./.	./.	./.	0/1:138,10:31:148:0.068:2	./.	./.
chr1	12921386	rs146271489	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,56:31:180:0.311:2	./.
chr1	12921423	rs201959610	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,10:31:106:0.095:2	./.	./.	./.	./.	./.	./.	./.
chr1	12921443	rs201306561	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,10:32:93:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr1	12921451	rs372024192	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,12:31:136:0.088:2	./.	./.
chr1	12921479	rs140567467	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,6:33:87:0.069:2	./.	./.	./.	./.	./.	./.	./.
chr1	12921485	rs200757322	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,11:32:141:0.078:2	./.	./.	./.	./.	./.
chr1	12921499	rs148455874	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,9:33:60:0.150:2	0/1:23,6:32:29:0.207:2	./.	0/1:76,8:32:84:0.095:2	./.	0/1:120,9:33:129:0.070:2	0/1:157,7:30:164:0.043:2	0/1:179,14:31:193:0.073:2	0/1:54,20:33:74:0.270:2	0/1:187,4:33:193:0.021:2	0/1:105,17:33:122:0.139:2
chr1	12921539	rs142594496	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,20:33:21:0.952:2	0/1:1,14:32:15:0.933:2	./.	0/1:104,5:32:109:0.046:2	0/1:110,13:32:123:0.106:2	0/1:116,14:29:130:0.108:2	0/1:192,5:33:198:0.025:2	./.	0/1:2,20:31:22:0.909:2	0/1:174,7:30:181:0.039:2	0/1:95,25:30:121:0.208:2
chr1	12921576	rs143879460	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,11:32:139:0.079:2	0/1:139,11:32:150:0.073:2	./.	./.	0/1:53,10:33:63:0.159:2	./.	./.
chr1	12921594	rs201429745	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,14:31:122:0.115:2	./.	./.	./.	./.	./.	./.
chr1	12921595	rs199647032	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,15:26:74:0.205:2	./.	./.
chr1	12921600	rs199504163	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,23:32:64:0.359:2	0/1:25,13:33:38:0.342:2	0/1:16,4:33:20:0.200:2	0/1:93,12:33:105:0.114:2	0/1:102,17:32:119:0.143:2	0/1:121,24:32:145:0.166:2	0/1:151,7:32:158:0.044:2	0/1:136,25:32:161:0.155:2	0/1:60,16:32:76:0.211:2	0/1:128,18:33:146:0.123:2	0/1:127,25:33:152:0.164:2
chr1	12921635	rs144099057	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,21:33:98:0.214:2	0/1:107,14:32:121:0.116:2	./.	./.	0/1:83,18:33:101:0.178:2	0/1:114,12:33:126:0.095:2	0/1:139,16:32:155:0.103:2
chr1	12942961	rs4625290	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,74:32:176:0.420:2	0/1:93,74:33:167:0.443:2	./.	./.	0/1:3,97:34:100:0.970:2	./.	./.
chr1	12942990	rs143934691	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,56:30:104:0.538:2	./.	./.	./.	./.	./.
chr1	12943038	rs3121081	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,16:32:59:0.271:2	0/1:65,19:31:84:0.226:2	./.	./.	0/1:0,19:33:19:1.00:2	./.	0/1:52,33:32:85:0.388:2
chr1	12943156	rs3121080	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,5:33:58:0.086:2	0/1:59,4:32:63:0.063:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr1	12943200	rs3121079	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,4:32:34:0.118:2	0/1:44,7:30:51:0.137:2	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.
chr1	12952796	rs199584852	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,8:31:103:0.078:2
chr1	12952966	rs144302450	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr1	12952968	rs199929997	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr1	12953000	rs201066233	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,5:31:87:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr1	12953018	rs199862473	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,8:28:74:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr1	12953035	rs201885730	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,13:32:67:0.194:2	./.	./.	./.	./.	./.	./.	./.
chr1	12953103	rs200956937	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,15:31:57:0.268:2	./.	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.
chr1	12953118	rs201988291	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,14:25:54:0.259:2	./.	./.	./.	./.	0/1:7,9:29:16:0.563:2	./.	./.
chr1	12953160	rs202058855	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,7:32:32:0.219:2	./.	./.	./.	./.	0/1:1,9:34:10:0.900:2	./.	./.
chr1	12953268	rs200660038	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,35:34:49:0.714:2	./.	./.	0/1:14,8:33:22:0.364:2	0/1:10,12:33:22:0.545:2	0/1:0,19:34:19:1.00:2	./.	0/1:2,56:33:58:0.966:2
chr1	12953291	rs200747196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.	./.	./.
chr1	12953303	rs201840380	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,32:33:58:0.552:2	./.	./.	0/1:10,9:31:19:0.474:2	0/1:9,14:32:23:0.609:2	0/1:1,19:32:20:0.950:2	./.	0/1:7,68:32:75:0.907:2
chr1	12954490	rs149281133	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,95:29:195:0.487:2	0/1:135,60:27:195:0.308:2	0/1:13,182:28:195:0.933:2	./.	0/1:100,96:28:196:0.490:2	./.	0/1:136,60:29:196:0.306:2	./.
chr1	12954670	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,17:33:188:0.090:2	./.	./.	0/1:167,13:33:180:0.072:2	./.	0/1:158,36:34:194:0.186:2	./.	./.
chr1	12954806	rs199739589	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,6:31:33:0.182:2	./.	./.	./.	./.	0/1:96,11:32:107:0.103:2	./.	./.
chr1	12954807	rs200921407	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,6:31:33:0.182:2	./.	./.	./.	./.	0/1:96,10:32:106:0.094:2	./.	./.
chr1	12954814	rs201689660	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,11:31:30:0.367:2	./.	./.	./.	./.	0/1:100,15:32:115:0.130:2	./.	./.
chr1	12954861	rs201870591	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:29:12:0.333:2	./.	./.	./.	0/1:99,5:29:104:0.048:2	./.	./.	./.	./.	./.	./.
chr1	12954870	rs199999065	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	0/1:99,5:30:104:0.048:2	./.	./.	./.	./.	./.	./.
chr1	12954890	rs201859036	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,18:30:21:0.857:2	./.	./.	./.	0/1:14,3:32:17:0.176:2	0/1:87,24:32:111:0.216:2	./.	./.
chr1	12954921	rs199792484	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,12:32:81:0.148:2	./.	./.
chr1	12954924	rs201268878	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.	0/1:13,3:32:16:0.188:2	0/1:63,9:33:72:0.125:2	./.	./.
chr1	12954941	rs200767575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,3:35:61:0.049:2	./.	./.
chr1	12954967	rs376279623	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:22:6:0.667:2	0/1:10,4:31:15:0.286:2	0/1:4,4:33:8:0.500:2	./.	./.	0/1:48,21:31:70:0.304:2
chr1	12954987	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12977531	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,19:32:56:0.339:2	./.	./.
chr1	12977626	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,42:27:112:0.375:2	0/1:48,26:28:74:0.351:2	./.	0/1:89,47:28:136:0.346:2	0/1:120,30:29:150:0.200:2	0/1:102,67:29:169:0.396:2	0/1:97,68:29:166:0.412:2	0/1:113,57:28:171:0.335:2	./.	0/1:137,35:27:173:0.203:2	./.
chr1	12977793	rs200627015	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,9:30:47:0.191:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12978266	rs199648834	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,6:32:40:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12978532	rs201364169	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,14:30:77:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12978577	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,34:30:196:0.173:2	./.	./.	./.	./.
chr1	12979729	rs146836223	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,166:32:187:0.888:2	0/1:14,90:32:104:0.865:2	./.	0/1:131,53:33:184:0.288:2	0/1:162,33:32:195:0.169:2	0/1:128,67:32:195:0.344:2	0/1:128,67:33:195:0.344:2	0/1:117,71:32:188:0.378:2	./.	0/1:156,38:33:194:0.196:2	./.
chr1	12979845	rs142026718	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,152:33:179:0.849:2	0/1:31,115:32:146:0.788:2	./.	0/1:126,61:34:187:0.326:2	0/1:148,48:33:196:0.245:2	0/1:100,97:33:197:0.492:2	0/1:122,75:33:197:0.381:2	0/1:104,91:33:195:0.467:2	./.	0/1:151,43:33:194:0.222:2	./.
chr1	12979987	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.
chr1	12980074	rs139206769	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,7:30:37:0.189:2	0/1:187,6:28:193:0.031:2	./.	./.	./.	./.	0/1:166,11:28:181:0.062:2	./.
chr1	12980122	rs148616830	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,4:32:10:0.400:2	0/1:1,2:31:3:0.667:2	./.	0/1:3,5:34:8:0.625:2	./.	0/1:1,3:31:4:0.750:2	0/1:6,5:34:11:0.455:2	0/1:6,4:32:10:0.400:2	./.	./.	./.
chr1	12980127	rs142075338	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	0/1:9,3:35:12:0.250:2	./.	./.	./.	./.
chr1	12980150	rs141480481	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,91:31:186:0.489:2
chr1	12980232	rs201674075	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,4:30:25:0.160:2	0/1:56,26:30:82:0.317:2	./.	0/1:51,40:30:91:0.440:2	0/1:65,31:31:96:0.323:2	0/1:64,48:30:112:0.429:2	0/1:121,23:32:144:0.160:2	0/1:124,14:32:139:0.101:2	0/1:113,18:31:132:0.137:2
chr1	13035545	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,3:32:23:0.130:2	./.	./.	0/1:15,3:33:18:0.167:2	0/1:13,5:32:18:0.278:2	./.	0/1:19,6:34:25:0.240:2	0/1:23,3:34:26:0.115:2	./.	./.	0/1:22,7:32:29:0.241:2
chr1	13035555	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,3:31:28:0.107:2	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.	0/1:25,3:31:28:0.107:2
chr1	13035557	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,4:31:18:0.222:2	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	0/1:25,3:31:28:0.107:2
chr1	13035627	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,5:24:51:0.098:2
chr1	13035630	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,5:31:51:0.098:2
chr1	13035669	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,18:30:109:0.165:2	./.	./.	./.	./.	0/1:64,25:31:89:0.281:2	0/1:62,11:30:73:0.151:2	./.
chr1	13035690	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,11:28:162:0.068:2	0/1:124,13:29:137:0.095:2	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	0/1:143,7:32:150:0.047:2
chr1	13036247	rs201369259	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,22:31:34:0.647:2	0/1:10,12:32:22:0.545:2	./.	0/1:44,13:30:57:0.228:2	0/1:35,15:30:50:0.300:2	0/1:19,8:31:27:0.296:2	0/1:33,10:31:43:0.233:2	0/1:46,20:30:66:0.303:2	0/1:4,16:32:20:0.800:2	0/1:35,18:30:53:0.340:2	0/1:47,31:30:78:0.397:2
chr1	13036294	rs200761485	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,6:31:102:0.059:2	./.
chr1	13036296	rs201492352	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,24:33:135:0.178:2	./.	./.	./.	./.	0/1:78,18:32:96:0.188:2	0/1:99,6:33:105:0.057:2	./.
chr1	13036309	rs200205121	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,31:32:173:0.179:2	./.	./.	./.	./.	0/1:101,30:32:131:0.229:2	./.	./.
chr1	13036330	rs200053605	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,67:30:185:0.364:2	0/1:87,65:31:152:0.428:2	0/1:17,13:31:30:0.433:2	0/1:125,70:30:195:0.359:2	0/1:125,56:31:182:0.309:2	0/1:121,68:30:189:0.360:2	0/1:111,76:32:187:0.406:2	0/1:120,76:31:196:0.388:2	0/1:86,99:31:185:0.535:2	0/1:69,121:31:190:0.637:2	0/1:136,60:32:196:0.306:2
chr1	13036447	rs199683676	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,100:32:196:0.510:2	0/1:79,113:32:192:0.589:2	0/1:50,38:32:88:0.432:2	0/1:96,99:32:195:0.508:2	0/1:94,102:31:196:0.520:2	0/1:109,88:31:197:0.447:2	0/1:88,108:32:196:0.551:2	0/1:92,104:32:196:0.531:2	0/1:51,141:33:192:0.734:2	0/1:51,143:32:194:0.737:2	0/1:89,107:32:196:0.546:2
chr1	13036506	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,9:32:196:0.046:2	./.	./.
chr1	13036538	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	./.
chr1	13036587	rs77788641	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,184:33:190:0.968:2	0/1:14,163:32:177:0.921:2	0/1:57,85:32:142:0.599:2	0/1:87,111:33:198:0.561:2	0/1:86,113:33:199:0.568:2	0/1:5,185:32:190:0.974:2	0/1:64,134:33:198:0.677:2	0/1:65,129:33:194:0.665:2	0/1:4,181:34:185:0.978:2	0/1:73,122:33:196:0.626:2	0/1:64,126:34:190:0.663:2
chr1	13036654	rs201636235	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,51:32:198:0.258:2	./.	./.	./.	./.	0/1:109,84:33:193:0.435:2	0/1:161,35:33:196:0.179:2	./.
chr1	13036736	rs202011965	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,56:31:56:1.00:2	0/1:11,6:30:17:0.353:2	0/1:115,44:29:159:0.277:2	0/1:80,18:29:98:0.184:2	0/1:2,54:29:56:0.964:2	0/1:66,44:30:110:0.400:2	0/1:97,57:29:154:0.370:2	0/1:0,69:30:69:1.00:2	0/1:73,54:30:127:0.425:2	0/1:99,51:30:150:0.340:2
chr1	13037823	rs202065754	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:27:62:1.00:2	0/1:1,26:27:27:0.963:2	0/1:27,11:27:38:0.289:2	0/1:137,40:28:177:0.226:2	0/1:93,65:27:158:0.411:2	0/1:1,43:27:44:0.977:2	0/1:116,28:27:144:0.194:2	0/1:117,46:27:164:0.282:2	0/1:0,53:28:53:1.00:2	0/1:82,81:28:163:0.497:2	0/1:95,63:27:158:0.399:2
chr1	13037860	rs201365789	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:1,46:33:47:0.979:2	0/1:36,13:33:49:0.265:2	0/1:131,35:32:166:0.211:2	0/1:111,60:31:171:0.351:2	0/1:3,77:32:80:0.963:2	0/1:121,28:31:149:0.188:2	0/1:101,55:32:156:0.353:2	0/1:0,43:33:43:1.00:2	0/1:70,67:32:137:0.489:2	0/1:87,42:32:129:0.326:2
chr1	13037864	rs200307391	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:1,48:32:49:0.980:2	0/1:37,15:32:52:0.288:2	0/1:132,34:31:167:0.205:2	0/1:108,61:31:169:0.361:2	0/1:2,83:31:85:0.976:2	0/1:119,37:32:156:0.237:2	0/1:96,57:31:153:0.373:2	0/1:0,51:31:51:1.00:2	0/1:71,78:30:149:0.523:2	0/1:89,47:30:138:0.346:2
chr1	13037877	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:3,57:32:60:0.950:2	0/1:43,13:32:56:0.232:2	0/1:125,49:33:174:0.282:2	0/1:154,21:32:175:0.120:2	0/1:4,89:32:93:0.957:2	0/1:115,45:32:160:0.281:2	0/1:92,70:32:162:0.432:2	0/1:2,55:33:57:0.965:2	0/1:68,90:32:158:0.570:2	0/1:90,61:32:151:0.404:2
chr1	13037932	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.
chr1	13038025	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,11:31:12:0.917:2	0/1:1,7:32:8:0.875:2	./.	./.	0/1:188,5:32:193:0.026:2	0/1:8,3:33:11:0.273:2	0/1:185,7:29:193:0.036:2	0/1:179,5:32:184:0.027:2	0/1:4,9:32:14:0.692:2	0/1:177,7:30:184:0.038:2	./.
chr1	13038028	.	G	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:29:9:0.778:2	0/1:3,5:25:8:0.625:2	./.	./.	./.	0/1:8,3:28:11:0.273:2	./.	./.	0/1:4,10:29:14:0.714:2	0/1:175,7:28:182:0.038:2	./.
chr1	13038064	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:29:68:0.985:2	0/1:1,50:29:51:0.980:2	0/1:52,7:31:59:0.119:2	0/1:164,27:31:191:0.141:2	0/1:154,34:30:188:0.181:2	0/1:4,78:30:82:0.951:2	0/1:159,35:31:194:0.180:2	0/1:163,31:30:194:0.160:2	0/1:4,85:30:89:0.955:2	0/1:138,52:30:190:0.274:2	0/1:169,28:29:197:0.142:2
chr1	13038090	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:31:172:0.029:2	./.	./.
chr1	13038119	rs202041730	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,150:32:155:0.968:2	0/1:1,85:32:86:0.988:2	0/1:51,21:32:72:0.292:2	0/1:162,34:33:196:0.173:2	0/1:123,72:32:196:0.369:2	0/1:10,177:32:187:0.947:2	0/1:119,81:32:200:0.405:2	0/1:129,68:33:197:0.345:2	0/1:9,178:33:187:0.952:2	0/1:97,98:33:195:0.503:2	0/1:133,55:32:188:0.293:2
chr1	13038201	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:1,35:31:36:0.972:2	0/1:34,6:30:40:0.150:2	0/1:181,11:31:192:0.057:2	0/1:168,25:30:193:0.130:2	0/1:3,65:30:68:0.956:2	0/1:161,28:31:189:0.148:2	0/1:137,37:31:174:0.213:2	0/1:2,64:31:66:0.970:2	0/1:135,50:31:185:0.270:2	0/1:146,31:30:177:0.175:2
chr1	13038202	rs201452092	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:1,35:31:36:0.972:2	0/1:34,6:31:40:0.150:2	0/1:179,11:31:190:0.058:2	0/1:167,25:29:193:0.130:2	0/1:3,65:31:68:0.956:2	0/1:163,28:31:191:0.147:2	0/1:135,39:31:175:0.224:2	0/1:2,64:32:66:0.970:2	0/1:137,50:31:187:0.267:2	0/1:144,31:31:175:0.177:2
chr1	13038221	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:1,62:32:63:0.984:2	0/1:34,10:32:44:0.227:2	0/1:164,31:32:195:0.159:2	0/1:148,43:31:191:0.225:2	0/1:2,118:31:121:0.983:2	0/1:152,42:31:195:0.216:2	0/1:132,60:31:192:0.313:2	0/1:1,106:32:107:0.991:2	0/1:113,77:33:190:0.405:2	0/1:126,55:32:181:0.304:2
chr1	13038327	rs199598633	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,106:32:109:0.981:2	0/1:0,95:32:95:1.00:2	0/1:4,19:32:23:0.826:2	0/1:150,35:31:185:0.189:2	0/1:63,97:31:160:0.606:2	0/1:1,117:31:118:0.992:2	0/1:82,102:31:184:0.554:2	0/1:76,103:31:179:0.575:2	0/1:78,60:32:139:0.435:2	0/1:100,80:32:180:0.444:2	0/1:65,101:32:167:0.608:2
chr1	13038350	rs200724140	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,35:31:150:0.233:2	./.
chr1	13052788	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,10:31:177:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13052789	rs61780142	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,162:31:175:0.926:2	0/1:5,115:31:120:0.958:2	0/1:36,15:31:51:0.294:2	0/1:168,26:30:194:0.134:2	./.	0/1:5,165:30:170:0.971:2	0/1:152,41:31:193:0.212:2	0/1:75,113:31:188:0.601:2	0/1:103,83:31:186:0.446:2	0/1:101,83:31:184:0.451:2	0/1:66,118:31:184:0.641:2
chr1	13052793	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,11:33:178:0.062:2	0/1:120,5:31:125:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13052801	rs200011492	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,11:29:179:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13052871	rs79792138	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,114:31:118:0.966:2	0/1:1,76:32:77:0.987:2	0/1:20,3:33:23:0.130:2	0/1:143,27:31:170:0.159:2	./.	0/1:2,115:30:117:0.983:2	0/1:106,23:32:129:0.178:2	0/1:75,103:31:178:0.579:2	0/1:87,62:32:149:0.416:2	0/1:83,92:31:175:0.526:2	0/1:62,120:32:182:0.659:2
chr1	13052895	rs201989186	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:31:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13052907	rs72474524	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:28:105:1.00:2	0/1:0,60:27:60:1.00:2	0/1:7,10:28:17:0.588:2	0/1:115,60:28:175:0.343:2	0/1:38,56:27:94:0.596:2	0/1:2,93:28:95:0.979:2	0/1:72,14:29:86:0.163:2	0/1:53,62:28:115:0.539:2	0/1:0,108:29:108:1.00:2	0/1:27,125:28:152:0.822:2	0/1:56,73:28:129:0.566:2
chr1	13052923	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:36:68:0.059:2	0/1:89,4:34:93:0.043:2	./.	./.	./.
chr1	13052929	rs183467185	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,3:35:86:0.035:2	./.	./.	./.
chr1	13183243	rs138897759	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:34:157:0.038:2	./.
chr1	13183248	rs141472183	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:31:148:0.041:2	./.
chr1	13183249	rs139566100	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,47:30:143:0.329:2	./.
chr1	13183422	rs28564063	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,20:32:196:0.102:2	./.	./.	0/1:151,42:32:193:0.218:2	./.	./.	./.	./.
chr1	13183439	rs28713604	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,76:30:185:0.411:2	0/1:79,64:29:143:0.448:2	0/1:4,27:30:32:0.871:2	0/1:0,184:30:184:1.00:2	0/1:46,145:29:191:0.759:2	0/1:95,99:29:194:0.510:2	0/1:51,139:30:191:0.732:2	0/1:36,150:30:186:0.806:2	0/1:59,134:31:193:0.694:2	0/1:0,181:30:181:1.00:2	0/1:45,138:30:184:0.754:2
chr1	13183472	rs201921464	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,43:33:164:0.262:2	./.	./.
chr1	13183492	rs199934329	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,16:31:141:0.113:2	./.	./.
chr1	13183511	rs72864546	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,23:33:130:0.177:2	0/1:79,19:32:98:0.194:2	0/1:24,4:33:28:0.143:2	0/1:84,22:32:106:0.208:2	0/1:102,16:33:118:0.136:2	0/1:107,15:33:122:0.123:2	0/1:128,7:33:135:0.052:2	0/1:119,17:31:136:0.125:2	0/1:131,8:33:139:0.058:2	0/1:109,21:32:130:0.162:2	0/1:105,26:30:131:0.198:2
chr1	13183528	rs76937665	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:104,4:34:108:0.037:2	0/1:80,5:33:85:0.059:2	./.	0/1:87,6:27:93:0.065:2	./.	./.	0/1:133,4:34:137:0.029:2	./.	./.	0/1:110,5:27:115:0.043:2	0/1:105,5:33:110:0.045:2
chr1	13183567	rs78160026	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:65,4:31:69:0.058:2	./.	0/1:85,8:31:93:0.086:2	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.	0/1:121,6:32:127:0.047:2	0/1:101,6:32:107:0.056:2
chr1	13183573	rs76669210	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:60,4:32:65:0.063:2	./.	0/1:52,36:31:88:0.409:2	0/1:100,6:32:107:0.057:2	./.	./.	./.	0/1:73,30:31:103:0.291:2	0/1:123,8:33:131:0.061:2	0/1:103,6:31:109:0.055:2
chr1	13183578	rs115194400	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,18:34:98:0.184:2	./.	./.
chr1	13183615	rs200176197	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:28:8:0.375:2	./.	0/1:57,11:26:68:0.162:2	./.	./.	./.	./.	./.	./.
chr1	13183631	rs80009603	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:28:74:0.054:2	0/1:43,8:30:51:0.157:2	./.	./.	./.	./.	./.	./.
chr1	13183634	rs2982225	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:30:73:0.055:2	0/1:44,6:29:50:0.120:2	./.	./.	./.	./.	./.	./.
chr1	13183780	rs116484938	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,54:32:136:0.397:2	./.	./.
chr1	13183833	rs115597766	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:182,7:32:190:0.037:2	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	0/1:195,5:32:200:0.025:2	0/1:189,6:31:195:0.031:2	0/1:180,8:28:188:0.043:2
chr1	13183860	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:32:196:0.026:2	./.	./.
chr1	13183966	rs80025711	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,20:32:85:0.238:2	0/1:44,7:32:51:0.137:2	./.	0/1:39,40:31:79:0.506:2	0/1:36,28:31:64:0.438:2	0/1:58,34:31:92:0.370:2	0/1:37,35:31:72:0.486:2	0/1:51,46:32:97:0.474:2	0/1:82,40:33:122:0.328:2	0/1:33,48:32:81:0.593:2	0/1:64,36:32:100:0.360:2
chr1	13216793	rs202167593	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,81:33:180:0.450:2	./.	./.
chr1	13216975	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,5:32:60:0.083:2	./.	./.	0/1:64,7:33:72:0.099:2	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	0/1:56,4:32:60:0.067:2	./.
chr1	13216976	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,5:31:59:0.085:2	./.	./.	0/1:62,8:28:70:0.114:2	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	0/1:57,4:32:61:0.066:2	./.
chr1	13217056	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,3:32:46:0.065:2	./.	0/1:0,2:33:2:1.00:2	0/1:25,4:33:29:0.138:2	0/1:16,3:32:19:0.158:2	0/1:37,5:31:42:0.119:2	./.	./.	./.	0/1:29,7:32:36:0.194:2	0/1:30,5:34:35:0.143:2
chr1	13217070	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.	./.	./.	./.	./.	./.	0/1:30,4:31:34:0.118:2
chr1	13217088	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,5:34:23:0.217:2	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.
chr1	13217174	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.	./.
chr1	13328864	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	0/1:148,51:32:199:0.256:2	./.
chr1	13328887	rs200631669	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:32:147:1.00:2	0/1:4,67:32:71:0.944:2	0/1:16,23:31:39:0.590:2	0/1:155,39:32:194:0.201:2	0/1:87,110:31:197:0.558:2	0/1:3,149:31:152:0.980:2	0/1:79,118:31:197:0.599:2	0/1:106,92:31:198:0.465:2	0/1:109,68:32:177:0.384:2	0/1:110,84:31:194:0.433:2	0/1:79,113:31:192:0.589:2
chr1	13328993	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:1,34:32:35:0.971:2	0/1:36,13:31:49:0.265:2	0/1:171,22:31:193:0.114:2	0/1:152,33:31:185:0.178:2	0/1:4,94:31:98:0.959:2	0/1:148,45:31:193:0.233:2	0/1:141,43:30:184:0.234:2	0/1:2,72:32:74:0.973:2	0/1:119,60:32:179:0.335:2	0/1:129,56:31:185:0.303:2
chr1	13329012	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,18:31:18:1.00:2	0/1:40,9:28:49:0.184:2	0/1:178,10:31:188:0.053:2	0/1:155,23:31:178:0.129:2	0/1:4,63:31:67:0.940:2	0/1:156,34:31:190:0.179:2	0/1:162,31:31:193:0.161:2	0/1:2,51:32:53:0.962:2	0/1:141,34:31:175:0.194:2	0/1:136,35:29:171:0.205:2
chr1	13329013	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:29:65:1.00:2	0/1:0,18:30:18:1.00:2	0/1:39,9:29:48:0.188:2	0/1:178,10:30:188:0.053:2	0/1:156,23:30:179:0.128:2	0/1:5,62:30:67:0.925:2	0/1:156,34:30:190:0.179:2	0/1:162,31:30:193:0.161:2	0/1:2,51:31:53:0.962:2	0/1:141,34:29:175:0.194:2	0/1:136,34:30:172:0.200:2
chr1	13329095	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,133:33:137:0.971:2	0/1:4,84:32:88:0.955:2	0/1:30,18:32:48:0.375:2	0/1:159,38:33:197:0.193:2	0/1:123,73:32:196:0.372:2	0/1:6,185:32:191:0.969:2	0/1:136,62:32:198:0.313:2	0/1:146,49:31:195:0.251:2	0/1:3,169:33:172:0.983:2	0/1:120,76:33:196:0.388:2	0/1:138,57:32:195:0.292:2
chr1	13329150	rs202211137	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,46:29:46:1.00:2	0/1:37,4:30:41:0.098:2	0/1:173,23:30:196:0.117:2	0/1:164,32:29:196:0.163:2	0/1:3,97:29:100:0.970:2	0/1:163,34:29:197:0.173:2	0/1:167,29:29:196:0.148:2	0/1:1,79:30:80:0.988:2	0/1:150,41:30:191:0.215:2	0/1:153,35:29:188:0.186:2
chr1	13329186	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:23:3:1.00:2	0/1:0,3:31:4:1.00:2	./.	./.	./.	0/1:4,7:27:11:0.636:2	./.	./.	0/1:2,5:25:7:0.714:2	0/1:156,5:28:161:0.031:2	0/1:178,6:26:184:0.033:2
chr1	13329189	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:33:4:1.00:2	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:187,5:31:192:0.026:2	./.	0/1:2,5:32:7:0.714:2	0/1:155,4:31:159:0.025:2	0/1:187,7:28:194:0.036:2
chr1	13329337	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,62:32:62:1.00:2	0/1:17,12:33:29:0.414:2	0/1:118,40:31:158:0.253:2	0/1:134,27:31:162:0.168:2	0/1:3,57:30:60:0.950:2	0/1:89,49:32:138:0.355:2	0/1:97,57:32:155:0.370:2	0/1:3,33:32:36:0.917:2	0/1:84,53:31:138:0.387:2	0/1:108,34:33:143:0.239:2
chr1	13329350	.	A	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,40:31:40:1.00:2	0/1:15,7:32:22:0.318:2	0/1:125,34:31:159:0.214:2	0/1:82,67:31:150:0.450:2	0/1:2,58:30:60:0.967:2	0/1:92,42:31:134:0.313:2	0/1:93,41:32:135:0.306:2	0/1:1,38:31:39:0.974:2	0/1:79,51:32:130:0.392:2	0/1:104,35:32:139:0.252:2
chr1	13329354	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,36:33:36:1.00:2	0/1:14,5:33:19:0.263:2	0/1:128,31:33:159:0.195:2	0/1:83,64:32:147:0.435:2	0/1:2,59:31:61:0.967:2	0/1:89,40:33:129:0.310:2	0/1:96,39:33:135:0.289:2	0/1:1,40:32:41:0.976:2	0/1:83,39:31:122:0.320:2	0/1:103,34:31:137:0.248:2
chr1	13329391	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:28:56:1.00:2	0/1:0,23:26:23:1.00:2	0/1:12,6:28:18:0.333:2	0/1:131,34:28:165:0.206:2	0/1:67,42:27:109:0.385:2	0/1:1,47:27:48:0.979:2	0/1:74,29:29:103:0.282:2	0/1:89,40:27:129:0.310:2	0/1:0,54:27:54:1.00:2	0/1:69,46:28:115:0.400:2	0/1:114,42:27:156:0.269:2
chr1	13330478	rs201817232	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:24:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13330560	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	0/1:10,15:32:25:0.600:2	0/1:78,9:31:87:0.103:2	./.
chr1	13330606	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.
chr1	13330627	rs200533297	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,15:33:43:0.349:2	0/1:22,11:33:33:0.333:2	./.	0/1:185,11:33:196:0.056:2	0/1:25,13:30:38:0.342:2	0/1:36,22:32:58:0.379:2	0/1:28,13:33:41:0.317:2	0/1:42,15:32:57:0.263:2	0/1:20,22:33:42:0.524:2	0/1:17,30:32:47:0.638:2	0/1:38,30:32:68:0.441:2
chr1	13330653	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,13:30:110:0.118:2	./.	./.
chr1	13330676	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,33:31:182:0.181:2	./.	./.
chr1	13330708	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,29:32:190:0.153:2	./.	./.
chr1	13330767	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,77:32:191:0.403:2	0/1:134,62:32:196:0.316:2	0/1:53,23:31:76:0.303:2	0/1:125,75:32:200:0.375:2	0/1:120,77:32:197:0.391:2	0/1:118,80:32:198:0.404:2	0/1:100,85:32:186:0.459:2	0/1:126,69:32:195:0.354:2	0/1:77,119:33:196:0.607:2	0/1:53,131:32:184:0.712:2	0/1:119,77:32:197:0.393:2
chr1	13330819	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.	./.
chr1	13330884	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,39:32:138:0.283:2	0/1:86,38:31:124:0.306:2	0/1:13,7:30:20:0.350:2	0/1:101,43:31:144:0.299:2	0/1:93,34:32:127:0.268:2	0/1:78,50:30:128:0.391:2	0/1:64,29:31:93:0.312:2	0/1:97,36:31:133:0.271:2	0/1:59,39:31:98:0.398:2	0/1:33,61:31:94:0.649:2	0/1:102,61:31:163:0.374:2
chr1	13330905	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,11:32:108:0.102:2	./.	./.	./.	./.	0/1:63,10:32:73:0.137:2	./.	./.
chr1	13330918	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,7:30:88:0.080:2	./.	./.	./.	./.	0/1:49,8:33:57:0.140:2	0/1:34,7:33:41:0.171:2	./.
chr1	13330920	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,7:31:38:0.184:2	./.
chr1	13330967	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:30:27:0.154:2
chr1	13331524	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,10:29:134:0.075:2	./.	./.	./.	./.	./.	0/1:95,8:31:103:0.078:2	./.
chr1	13331545	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,14:32:89:0.157:2	./.	./.	./.	./.	0/1:49,11:32:60:0.183:2	0/1:57,10:30:67:0.149:2	./.
chr1	13331584	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,5:34:55:0.093:2
chr1	13331587	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,5:30:54:0.093:2
chr1	13331611	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:34:41:0.073:2
chr1	13331669	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:34:21:0.190:2	./.	0/1:29,3:34:32:0.094:2	./.	./.	0/1:24,3:31:27:0.111:2
chr1	13386983	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,3:30:22:0.136:2	0/1:117,66:30:183:0.361:2	./.	0/1:96,88:30:184:0.478:2	0/1:93,103:30:196:0.526:2	0/1:112,87:31:199:0.437:2	0/1:87,43:32:130:0.331:2	0/1:145,36:31:181:0.199:2	0/1:56,88:31:144:0.611:2
chr1	13387065	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,11:30:192:0.057:2
chr1	13387093	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,69:31:194:0.358:2	0/1:103,81:32:184:0.440:2	0/1:0,49:32:49:1.00:2	0/1:0,162:32:162:1.00:2	0/1:2,150:31:152:0.987:2	0/1:0,190:32:190:1.00:2	0/1:2,185:32:187:0.989:2	0/1:0,188:32:188:1.00:2	0/1:99,71:32:170:0.418:2	0/1:0,163:32:163:1.00:2	0/1:1,143:31:144:0.993:2
chr1	13387133	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.
chr1	13387141	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,13:31:33:0.394:2	0/1:120,44:31:165:0.268:2	0/1:101,41:32:142:0.289:2	./.	./.	./.	./.	0/1:113,63:32:177:0.358:2	./.
chr1	13387222	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,6:35:161:0.037:2	./.	./.
chr1	13387370	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:142,28:32:170:0.165:2	0/1:73,24:32:97:0.247:2	./.	0/1:62,27:32:89:0.303:2	0/1:85,35:32:120:0.292:2	0/1:42,48:32:90:0.533:2	0/1:53,56:30:109:0.514:2	0/1:45,42:32:87:0.483:2	./.	0/1:57,19:33:76:0.250:2	./.
chr1	13387486	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,12:33:92:0.130:2	0/1:59,8:31:67:0.119:2	./.	0/1:11,14:31:25:0.560:2	0/1:20,6:31:26:0.231:2	0/1:17,17:31:34:0.500:2	0/1:24,7:32:31:0.226:2	0/1:22,13:32:35:0.371:2	./.	0/1:19,6:31:25:0.240:2	./.
chr1	13388638	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,38:29:192:0.199:2	./.	./.	./.	./.
chr1	13388683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,15:32:65:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13388949	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13389422	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,19:30:61:0.311:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13389589	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:83,73:27:156:0.468:2	0/1:48,66:27:114:0.579:2	./.	0/1:69,44:29:113:0.389:2	0/1:143,37:27:181:0.206:2	0/1:75,101:28:176:0.574:2	0/1:88,78:28:166:0.470:2	0/1:85,93:28:178:0.522:2	./.	0/1:102,50:28:152:0.329:2	./.
chr1	13389684	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,14:32:47:0.298:2	./.	./.
chr1	13448084	rs138924513	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:81,7:32:88:0.080:2	0/1:42,4:33:46:0.087:2	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	0/1:58,4:30:62:0.065:2	0/1:100,11:34:111:0.099:2	0/1:105,7:31:112:0.063:2
chr1	13448110	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:27:190:0.032:2	./.	./.	./.
chr1	13448116	rs148992058	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,11:29:109:0.101:2	0/1:51,5:32:56:0.089:2	./.	0/1:134,6:30:140:0.043:2	0/1:183,6:31:189:0.032:2	./.	./.	./.	0/1:71,6:32:77:0.078:2	./.	0/1:131,7:32:138:0.051:2
chr1	13448120	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:113,4:32:117:0.034:2	0/1:53,4:33:57:0.070:2	0/1:13,3:33:16:0.188:2	./.	./.	0/1:157,4:34:161:0.025:2	./.	0/1:186,8:30:194:0.041:2	0/1:76,4:34:80:0.050:2	./.	0/1:135,4:34:139:0.029:2
chr1	13448180	rs199555791	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,5:31:22:0.227:2	0/1:150,15:32:165:0.091:2	0/1:142,13:31:155:0.084:2	./.	./.	./.	./.	0/1:116,22:31:138:0.159:2	./.
chr1	13448184	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,4:29:20:0.200:2	0/1:143,14:28:157:0.089:2	0/1:136,12:27:148:0.081:2	./.	./.	./.	./.	0/1:114,21:28:135:0.156:2	./.
chr1	13448199	rs143762964	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,16:31:127:0.126:2	0/1:45,14:32:59:0.237:2	0/1:16,5:32:21:0.238:2	0/1:132,37:30:169:0.219:2	0/1:118,28:30:146:0.192:2	0/1:136,22:31:158:0.139:2	0/1:147,21:30:168:0.125:2	0/1:149,24:30:173:0.139:2	0/1:87,30:32:117:0.256:2	0/1:94,48:30:142:0.338:2	0/1:116,26:30:142:0.183:2
chr1	13448283	rs80327699	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,183:33:188:0.973:2	0/1:1,160:32:161:0.994:2	0/1:0,47:32:47:1.00:2	0/1:6,186:33:192:0.969:2	0/1:3,191:33:194:0.985:2	0/1:2,187:33:189:0.989:2	0/1:7,181:33:188:0.963:2	0/1:6,188:32:194:0.969:2	0/1:3,183:34:186:0.984:2	0/1:2,187:33:189:0.989:2	0/1:2,179:33:181:0.989:2
chr1	13448303	rs75752352	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,66:32:196:0.338:2	./.	./.	./.	./.
chr1	13448311	rs200879272	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,10:32:191:0.052:2	./.	./.
chr1	13448317	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:34:193:0.036:2	./.	./.
chr1	13448351	rs71183793	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,132:30:176:0.750:2	0/1:44,121:29:165:0.733:2	0/1:6,44:30:50:0.880:2	0/1:44,139:29:183:0.760:2	0/1:65,129:29:194:0.665:2	0/1:51,130:30:181:0.718:2	0/1:110,87:30:197:0.442:2	0/1:62,130:29:192:0.677:2	0/1:36,144:31:180:0.800:2	0/1:29,163:30:192:0.849:2	0/1:52,140:29:192:0.729:2
chr1	13448421	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.	0/1:168,9:32:177:0.051:2	./.	./.
chr1	13448443	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,34:33:169:0.201:2	./.	./.
chr1	13448455	rs200145993	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,5:31:39:0.128:2	./.	./.	./.	./.	./.	0/1:138,24:31:162:0.148:2	./.	./.
chr1	13448475	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:32:187:0.027:2	./.
chr1	13448547	rs200801174	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,32:31:141:0.227:2	0/1:84,20:32:104:0.192:2	0/1:11,4:31:15:0.267:2	0/1:157,25:32:182:0.137:2	./.	0/1:119,30:31:149:0.201:2	0/1:107,25:31:132:0.189:2	0/1:140,34:31:174:0.195:2	0/1:104,36:31:140:0.257:2	0/1:99,62:30:161:0.385:2	0/1:130,37:31:167:0.222:2
chr1	13448548	rs201453721	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,32:30:140:0.229:2	0/1:84,20:30:104:0.192:2	0/1:11,4:30:15:0.267:2	0/1:157,25:31:182:0.137:2	./.	0/1:116,30:30:146:0.205:2	0/1:104,25:30:129:0.194:2	0/1:136,34:30:170:0.200:2	0/1:101,36:30:137:0.263:2	0/1:98,62:30:160:0.388:2	0/1:128,37:29:166:0.224:2
chr1	13448551	rs199771678	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,32:32:140:0.229:2	0/1:83,20:32:103:0.194:2	0/1:11,4:27:15:0.267:2	0/1:155,25:32:181:0.139:2	./.	0/1:113,30:31:143:0.210:2	0/1:101,25:31:126:0.198:2	0/1:139,34:31:173:0.197:2	0/1:102,36:32:138:0.261:2	0/1:100,63:31:163:0.387:2	0/1:126,38:31:164:0.232:2
chr1	13449633	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,82:30:194:0.423:2	0/1:77,44:29:121:0.364:2	0/1:18,9:31:27:0.333:2	0/1:116,64:30:180:0.356:2	0/1:106,45:30:151:0.298:2	0/1:99,92:30:191:0.482:2	0/1:118,78:30:196:0.398:2	0/1:106,90:30:196:0.459:2	0/1:63,116:31:179:0.648:2	0/1:105,86:31:192:0.450:2	0/1:122,72:30:194:0.371:2
chr1	13449656	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,21:31:170:0.124:2	0/1:100,39:31:139:0.281:2	./.	./.	./.	./.	./.	./.
chr1	13449659	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,17:33:164:0.104:2	./.	./.
chr1	13449689	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,72:28:171:0.421:2	0/1:88,50:29:138:0.362:2	0/1:15,11:30:26:0.423:2	0/1:117,48:29:165:0.291:2	0/1:88,46:28:134:0.343:2	0/1:101,71:29:172:0.413:2	0/1:105,53:29:158:0.335:2	0/1:103,81:30:184:0.440:2	0/1:68,84:30:152:0.553:2	0/1:95,73:28:168:0.435:2	0/1:127,57:29:184:0.310:2
chr1	13449692	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,18:30:160:0.113:2	./.	0/1:136,26:31:162:0.160:2	./.	./.
chr1	13449703	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,54:32:173:0.312:2	0/1:102,34:31:136:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13449723	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,47:32:156:0.303:2	0/1:97,40:31:137:0.292:2	0/1:17,6:33:23:0.261:2	0/1:125,40:31:165:0.242:2	0/1:102,20:30:122:0.164:2	0/1:107,66:32:173:0.382:2	0/1:118,25:31:143:0.175:2	0/1:117,63:32:180:0.350:2	0/1:103,56:32:159:0.352:2	0/1:98,74:32:172:0.430:2	0/1:134,43:32:177:0.243:2
chr1	13449728	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,44:31:161:0.273:2	0/1:104,40:32:144:0.278:2	0/1:15,4:31:19:0.211:2	0/1:125,41:32:166:0.247:2	0/1:103,21:32:124:0.169:2	0/1:109,68:32:177:0.384:2	0/1:125,27:33:152:0.178:2	0/1:121,61:32:182:0.335:2	0/1:101,56:33:157:0.357:2	0/1:97,74:31:171:0.433:2	0/1:136,43:32:179:0.240:2
chr1	13449788	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,45:32:181:0.250:2	0/1:112,45:32:157:0.287:2	0/1:14,5:30:19:0.263:2	0/1:129,53:32:182:0.291:2	0/1:126,19:31:146:0.131:2	0/1:106,65:32:171:0.380:2	0/1:156,27:32:183:0.148:2	0/1:126,52:32:178:0.292:2	0/1:98,62:32:160:0.388:2	0/1:101,68:31:169:0.402:2	0/1:140,46:32:187:0.247:2
chr1	13449801	.	G	A,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:32:174:0.276:2	0/1:31:160:0.294:2	./.	./.	0/2:31:140:0.137:2	0/1:30:181:0.370:2	./.	0/1:31:185:0.299:2	./.	./.	0/1:31:190:0.258:2
chr1	13449832	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,64:28:190:0.337:2	0/1:94,53:29:147:0.361:2	0/1:19,3:30:22:0.136:2	0/1:157,41:30:198:0.207:2	./.	0/1:124,70:28:194:0.361:2	0/1:132,19:29:151:0.126:2	0/1:131,64:29:195:0.328:2	0/1:158,37:29:195:0.190:2	0/1:133,60:30:193:0.311:2	0/1:132,56:29:188:0.298:2
chr1	13449922	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,12:33:96:0.125:2	0/1:54,14:32:68:0.206:2	./.	0/1:79,13:32:93:0.141:2	0/1:40,10:31:51:0.200:2	0/1:63,13:30:76:0.171:2	0/1:47,3:33:50:0.060:2	0/1:70,7:33:77:0.091:2	0/1:43,26:33:69:0.377:2	0/1:58,21:33:79:0.266:2	0/1:93,18:33:111:0.162:2
chr1	13450014	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,34:29:100:0.340:2	0/1:26,15:29:41:0.366:2	0/1:5,4:30:9:0.444:2	0/1:46,26:30:72:0.361:2	0/1:27,26:30:53:0.491:2	0/1:60,26:29:86:0.302:2	0/1:37,30:30:67:0.448:2	0/1:56,9:25:66:0.138:2	0/1:62,44:30:106:0.415:2	0/1:48,50:30:98:0.510:2	0/1:49,48:29:97:0.495:2
chr1	13450097	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.	./.	0/1:41,6:33:47:0.128:2	./.	./.
chr1	13450099	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:27:28:0.143:2	0/1:47,6:23:53:0.113:2	./.	./.	0/1:23,22:31:45:0.489:2	0/1:40,11:30:51:0.216:2	./.
chr1	13450105	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.	./.
chr1	13450634	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.	./.	./.
chr1	13450657	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,7:32:186:0.038:2	./.	./.	./.	./.	0/1:170,5:33:175:0.029:2	./.	./.
chr1	13450660	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,6:31:183:0.033:2	./.	./.	./.	./.	0/1:159,5:31:164:0.030:2	./.	./.
chr1	13450679	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,9:31:186:0.048:2	./.	./.	./.	./.	0/1:167,9:32:176:0.051:2	./.	./.
chr1	13450683	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,72:32:173:0.416:2	0/1:61,53:32:114:0.465:2	0/1:22,4:32:26:0.154:2	0/1:156,30:33:186:0.161:2	0/1:144,49:32:194:0.254:2	0/1:102,82:32:184:0.446:2	0/1:135,64:32:199:0.322:2	0/1:106,89:32:195:0.456:2	0/1:137,39:34:177:0.222:2	0/1:89,91:32:180:0.506:2	0/1:97,69:32:166:0.416:2
chr1	13450755	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,6:32:166:0.036:2	./.	./.	./.	./.	0/1:151,6:32:157:0.038:2	./.	./.
chr1	13450756	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,6:31:165:0.036:2	./.	./.	./.	./.	0/1:151,6:32:157:0.038:2	./.	./.
chr1	13450767	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,5:31:146:0.034:2	./.	./.	./.	./.	0/1:134,6:31:140:0.043:2	./.	./.
chr1	13450772	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,22:29:115:0.191:2	./.	./.	./.	./.
chr1	13450798	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,35:29:89:0.393:2	0/1:29,33:29:62:0.532:2	0/1:9,4:29:13:0.308:2	0/1:63,56:29:119:0.471:2	0/1:57,41:28:98:0.418:2	0/1:63,44:29:107:0.411:2	0/1:33,51:29:84:0.607:2	0/1:52,54:28:106:0.509:2	0/1:20,73:29:93:0.785:2	0/1:42,57:28:99:0.576:2	0/1:70,64:29:134:0.478:2
chr1	13450835	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,25:33:86:0.291:2	0/1:32,27:31:59:0.458:2	./.	./.	./.	./.	./.	./.
chr1	13474785	.	G	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:173,20:30:193:0.104:2	0/1:146,17:32:163:0.104:2	./.	0/1:181,13:31:194:0.067:2	0/1:190,7:29:197:0.036:2	0/1:184,10:30:194:0.052:2	0/1:181,13:32:195:0.067:2	0/1:175,20:31:195:0.103:2	0/1:176,20:32:197:0.102:2	0/1:181,17:30:198:0.086:2	./.
chr1	13474788	rs200939483	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,83:31:195:0.426:2	./.	./.
chr1	13474849	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,58:32:188:0.309:2	0/1:130,60:32:190:0.316:2	0/1:80,37:31:117:0.316:2	0/1:136,59:32:195:0.303:2	0/1:130,62:31:192:0.323:2	0/1:126,64:31:190:0.337:2	0/1:139,57:32:196:0.291:2	0/1:128,65:32:193:0.337:2	0/1:122,68:33:190:0.358:2	0/1:121,68:32:189:0.360:2	0/1:146,42:32:189:0.223:2
chr1	13474934	rs201446830	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,38:31:167:0.229:2	./.	./.
chr1	13474951	rs201753501	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,36:33:191:0.188:2	0/1:156,38:32:194:0.196:2	0/1:92,28:32:120:0.233:2	0/1:175,19:33:194:0.098:2	0/1:184,14:32:198:0.071:2	0/1:166,31:33:197:0.157:2	0/1:179,16:33:195:0.082:2	0/1:173,25:33:198:0.126:2	0/1:94,90:34:184:0.489:2	0/1:156,38:33:194:0.196:2	0/1:166,26:32:193:0.135:2
chr1	13474974	rs201607561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,73:33:183:0.399:2	./.	./.
chr1	13474980	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,24:30:195:0.123:2	0/1:178,17:31:196:0.087:2	0/1:107,15:29:122:0.123:2	0/1:181,12:31:193:0.062:2	0/1:191,6:30:197:0.030:2	0/1:174,18:29:192:0.094:2	0/1:189,7:31:196:0.036:2	0/1:182,14:30:196:0.071:2	0/1:169,14:32:183:0.077:2	0/1:181,15:31:196:0.077:2	0/1:181,14:31:195:0.072:2
chr1	13475186	rs201814272	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,84:30:194:0.433:2	./.	./.
chr1	13475211	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:160,4:33:164:0.024:2	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2	0/1:168,5:32:173:0.029:2
chr1	13475218	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:32:157:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:30:160:0.031:2	0/1:171,5:30:176:0.028:2
chr1	13475254	rs200765914	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:147,12:32:159:0.075:2	0/1:98,4:31:102:0.039:2	./.	0/1:165,17:30:182:0.093:2	0/1:113,7:31:120:0.058:2	0/1:148,12:32:160:0.075:2	0/1:100,11:32:111:0.099:2	0/1:122,7:33:129:0.054:2	0/1:146,5:30:151:0.033:2	0/1:118,15:32:133:0.113:2	0/1:163,11:32:174:0.063:2
chr1	13476308	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,21:31:78:0.269:2	./.	./.
chr1	13476315	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,19:32:78:0.244:2	./.	./.
chr1	13476335	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,17:30:101:0.168:2	./.	./.
chr1	13476379	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,34:31:138:0.246:2	./.	./.
chr1	13476387	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,35:32:134:0.261:2	./.	./.
chr1	13476391	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,41:34:139:0.295:2	./.	./.
chr1	13476472	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,62:30:178:0.348:2	./.	./.
chr1	13476533	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,29:32:144:0.201:2	./.	./.
chr1	13476540	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,24:33:129:0.186:2	./.	./.
chr1	13476579	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,61:32:186:0.328:2	./.	./.
chr1	13476611	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,80:33:192:0.417:2	./.	./.
chr1	13476659	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:174,10:30:185:0.054:2	./.	./.	./.	0/1:190,6:31:196:0.031:2	0/1:185,9:30:194:0.046:2	0/1:177,9:30:186:0.048:2	0/1:182,11:31:193:0.057:2	0/1:185,9:32:196:0.046:2	./.	0/1:185,5:31:191:0.026:2
chr1	13476661	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:181,10:29:191:0.052:2	./.	./.	./.	0/1:187,8:31:195:0.041:2	0/1:186,8:31:194:0.041:2	0/1:179,10:29:189:0.053:2	0/1:181,11:31:192:0.057:2	0/1:179,10:33:189:0.053:2	./.	0/1:183,6:31:190:0.032:2
chr1	13476741	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,41:32:151:0.272:2	./.	./.
chr1	13476762	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,25:33:137:0.182:2	./.	./.	./.	./.	0/1:96,20:34:116:0.172:2	./.	./.
chr1	13476768	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:28:9:0.444:2	0/1:83,49:28:132:0.371:2	0/1:65,26:27:92:0.286:2	./.	./.	./.	./.	./.	./.
chr1	13476775	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,23:32:126:0.183:2	./.	./.	./.	./.	0/1:73,17:34:90:0.189:2	0/1:97,25:32:122:0.205:2	./.
chr1	13476777	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,25:31:118:0.212:2	./.
chr1	13477381	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,6:30:21:0.286:2	0/1:139,36:31:176:0.206:2	0/1:124,55:31:179:0.307:2	./.	./.	./.	./.	0/1:131,56:31:188:0.299:2	0/1:125,65:31:190:0.342:2
chr1	13477402	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,25:32:140:0.179:2	./.	./.	./.	./.	0/1:133,20:33:153:0.131:2	0/1:160,22:32:182:0.121:2	./.
chr1	13477410	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,51:32:157:0.325:2	0/1:55,26:32:81:0.321:2	0/1:7,9:32:16:0.563:2	0/1:80,41:33:121:0.339:2	0/1:99,61:32:160:0.381:2	0/1:98,57:33:156:0.368:2	0/1:93,50:32:143:0.350:2	0/1:102,56:32:158:0.354:2	0/1:95,47:32:142:0.331:2	0/1:92,82:32:174:0.471:2	0/1:88,68:32:156:0.436:2
chr1	13477433	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,37:32:129:0.287:2	./.	./.
chr1	13477503	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,8:32:59:0.136:2	./.	./.	./.	./.	./.
chr1	13495320	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2	./.	./.	./.
chr1	13495325	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,9:30:71:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr1	13496271	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.
chr1	13496277	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.
chr1	13496283	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.
chr1	13496361	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:33:130:0.038:2
chr1	13496383	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:137:0.029:2
chr1	13496429	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,63:32:146:0.432:2	./.	./.
chr1	13497572	rs199881782	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,3:30:20:0.150:2	0/1:86,32:28:118:0.271:2	0/1:82,11:28:93:0.118:2	./.	0/1:86,10:28:96:0.104:2	0/1:183,14:28:197:0.071:2	./.	0/1:113,37:28:150:0.247:2	0/1:114,26:28:140:0.186:2
chr1	13497584	rs201031594	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,3:32:21:0.143:2	0/1:97,33:31:130:0.254:2	0/1:92,11:31:103:0.107:2	./.	0/1:95,11:33:106:0.104:2	0/1:178,15:32:193:0.078:2	./.	0/1:129,37:31:166:0.223:2	0/1:134,24:32:158:0.152:2
chr1	13497591	rs201470154	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,13:30:78:0.167:2	./.	./.
chr1	13497592	rs199979987	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,12:30:78:0.154:2	./.	./.
chr1	13497626	rs200005698	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,19:31:169:0.112:2	./.	./.	0/1:122,9:28:131:0.069:2	0/1:122,5:28:128:0.039:2	./.	0/1:164,19:30:183:0.104:2	0/1:179,10:30:189:0.053:2
chr1	13497756	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,35:32:104:0.337:2	./.	./.
chr1	13497768	rs201993208	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,41:33:118:0.347:2	./.	./.
chr1	13497810	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,68:32:161:0.422:2	./.	./.	./.	./.
chr1	13523852	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,97:32:100:0.970:2	0/1:0,49:32:49:1.00:2	./.	0/1:67,57:33:124:0.460:2	./.	./.	0/1:63,50:32:113:0.442:2	0/1:74,55:33:129:0.426:2	0/1:79,39:33:118:0.331:2	./.	0/1:62,56:33:118:0.475:2
chr1	13526474	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,5:30:79:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526541	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,10:32:70:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526552	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,9:32:78:0.115:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526566	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,8:32:77:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526598	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,8:32:94:0.085:2	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.
chr1	13526617	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,8:32:109:0.073:2	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.
chr1	13526664	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,6:31:135:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526807	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,84:33:165:0.509:2	./.	./.
chr1	13607768	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:30:20:0.300:2	0/1:112,73:30:185:0.395:2	./.	0/1:112,84:30:196:0.429:2	0/1:128,71:31:199:0.357:2	0/1:106,91:31:197:0.462:2	0/1:85,56:31:141:0.397:2	0/1:143,45:32:188:0.239:2	0/1:57,83:30:140:0.593:2
chr1	13607850	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:33:182:0.027:2
chr1	13607878	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,78:32:195:0.400:2	0/1:88,84:32:172:0.488:2	0/1:0,41:31:41:1.00:2	0/1:0,169:31:169:1.00:2	0/1:10,141:31:151:0.934:2	0/1:1,183:31:184:0.995:2	0/1:0,190:32:190:1.00:2	0/1:0,192:32:192:1.00:2	0/1:95,75:33:170:0.441:2	0/1:1,172:32:173:0.994:2	0/1:8,168:32:176:0.955:2
chr1	13607926	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,12:31:36:0.333:2	0/1:130,29:32:160:0.182:2	0/1:118,44:31:162:0.272:2	./.	./.	./.	./.	0/1:134,50:32:184:0.272:2	./.
chr1	13608155	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,35:32:133:0.263:2	0/1:72,30:32:102:0.294:2	./.	0/1:39,29:32:68:0.426:2	0/1:66,23:32:89:0.258:2	0/1:51,42:32:93:0.452:2	0/1:48,55:32:103:0.534:2	0/1:41,49:32:90:0.544:2	./.	0/1:59,17:32:77:0.224:2	./.
chr1	13608202	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.
chr1	13608271	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,6:32:80:0.075:2	0/1:67,7:32:74:0.095:2	./.	0/1:12,4:31:16:0.250:2	0/1:30,6:32:36:0.167:2	0/1:23,14:31:37:0.378:2	0/1:17,15:31:32:0.469:2	0/1:26,28:31:54:0.519:2	./.	0/1:14,3:33:17:0.176:2	./.
chr1	13609423	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,37:30:192:0.193:2	./.	./.	./.	./.
chr1	13609468	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,28:31:102:0.275:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13609734	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,12:30:38:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13610207	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,20:28:67:0.299:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13610374	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,68:28:139:0.489:2	0/1:49,59:28:108:0.546:2	./.	0/1:90,49:29:141:0.353:2	0/1:123,29:29:152:0.191:2	0/1:93,82:28:176:0.469:2	0/1:78,86:29:164:0.524:2	0/1:85,94:28:179:0.525:2	./.	0/1:107,51:29:158:0.323:2	./.
chr1	13610469	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,27:31:69:0.391:2	./.	./.
chr1	13668939	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,13:33:131:0.099:2	./.
chr1	13668975	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,8:32:191:0.042:2	./.	./.	./.	./.	0/1:110,5:34:116:0.043:2
chr1	13669166	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:35:196:0.026:2	./.	./.
chr1	13669172	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:34:188:0.037:2	./.	./.
chr1	13669206	rs200459682	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,44:31:193:0.228:2	0/1:143,42:31:185:0.227:2	0/1:48,17:31:65:0.262:2	0/1:142,37:31:180:0.207:2	0/1:145,49:30:194:0.253:2	0/1:161,34:31:195:0.174:2	0/1:170,28:32:198:0.141:2	0/1:151,45:31:197:0.230:2	0/1:116,71:32:187:0.380:2	0/1:146,52:32:198:0.263:2	0/1:142,50:31:192:0.260:2
chr1	13669276	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,15:31:181:0.083:2	./.	./.
chr1	13669298	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,34:33:180:0.189:2	./.	./.
chr1	13669310	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,12:31:49:0.245:2	./.	./.	./.	./.	./.	0/1:162,21:31:183:0.115:2	./.	./.
chr1	13669330	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,7:33:154:0.045:2	./.	./.	./.	./.	0/1:169,12:31:181:0.066:2	./.
chr1	13669402	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,47:32:150:0.313:2	0/1:80,19:32:99:0.192:2	0/1:21,14:32:35:0.400:2	0/1:163,14:32:177:0.079:2	./.	0/1:131,41:30:172:0.238:2	0/1:98,18:31:116:0.155:2	0/1:122,34:32:156:0.218:2	0/1:111,32:31:143:0.224:2	0/1:104,51:31:155:0.329:2	0/1:130,30:31:160:0.188:2
chr1	13669403	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,47:30:148:0.318:2	0/1:78,19:31:97:0.196:2	0/1:20,14:30:34:0.412:2	0/1:160,14:30:174:0.080:2	./.	0/1:130,40:30:170:0.235:2	0/1:96,18:30:115:0.158:2	0/1:121,34:31:155:0.219:2	0/1:110,32:30:142:0.225:2	0/1:102,51:31:153:0.333:2	0/1:128,30:29:159:0.190:2
chr1	13669406	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,47:31:147:0.320:2	0/1:74,19:31:93:0.204:2	0/1:19,14:32:33:0.424:2	0/1:156,15:31:171:0.088:2	./.	0/1:129,40:30:169:0.237:2	0/1:99,18:32:117:0.154:2	0/1:122,34:32:156:0.218:2	0/1:106,32:31:138:0.232:2	0/1:103,51:32:154:0.331:2	0/1:129,30:32:159:0.189:2
chr1	13670488	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,80:30:191:0.419:2	0/1:70,39:30:109:0.358:2	0/1:10,13:30:23:0.565:2	0/1:105,78:30:183:0.426:2	0/1:100,35:30:135:0.259:2	0/1:99,93:29:192:0.484:2	0/1:114,82:30:196:0.418:2	0/1:103,89:29:192:0.464:2	0/1:60,118:30:178:0.663:2	0/1:97,96:30:193:0.497:2	0/1:118,71:31:189:0.376:2
chr1	13670511	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,28:30:176:0.159:2	0/1:114,30:31:144:0.208:2	./.	./.	./.	./.	./.	./.
chr1	13670514	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,30:32:159:0.189:2	./.	./.
chr1	13670544	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,75:29:176:0.426:2	0/1:87,50:29:137:0.365:2	0/1:14,12:30:26:0.462:2	0/1:121,48:30:169:0.284:2	0/1:116,37:30:153:0.242:2	0/1:117,68:29:185:0.368:2	0/1:119,42:29:161:0.261:2	0/1:105,71:30:176:0.403:2	0/1:56,77:30:133:0.579:2	0/1:81,83:29:164:0.506:2	0/1:112,74:28:186:0.398:2
chr1	13670547	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,15:30:163:0.092:2	./.	0/1:107,32:30:140:0.230:2	./.	./.
chr1	13670558	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,53:32:183:0.290:2	0/1:98,41:31:139:0.295:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13670578	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,47:32:178:0.267:2	0/1:91,45:32:136:0.331:2	0/1:22,4:32:26:0.154:2	0/1:122,42:32:164:0.256:2	0/1:128,26:31:154:0.169:2	0/1:111,41:31:152:0.270:2	0/1:125,21:33:146:0.144:2	0/1:138,46:32:184:0.250:2	0/1:113,31:32:144:0.215:2	0/1:108,63:31:171:0.368:2	0/1:124,52:31:176:0.295:2
chr1	13670583	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,53:32:177:0.301:2	0/1:91,42:32:133:0.316:2	0/1:23,4:32:27:0.148:2	0/1:129,43:32:172:0.250:2	0/1:129,27:30:156:0.173:2	0/1:110,38:31:148:0.257:2	0/1:125,20:32:145:0.138:2	0/1:139,47:32:186:0.253:2	0/1:113,32:33:145:0.221:2	0/1:103,67:31:170:0.394:2	0/1:120,49:32:169:0.290:2
chr1	13670643	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,42:32:182:0.231:2	0/1:106,43:31:149:0.289:2	0/1:26,5:31:31:0.161:2	0/1:133,36:31:169:0.213:2	0/1:137,24:31:161:0.149:2	0/1:121,49:31:170:0.288:2	0/1:136,27:32:163:0.166:2	0/1:140,36:31:176:0.205:2	0/1:102,63:32:165:0.382:2	0/1:99,72:32:171:0.421:2	0/1:134,38:31:172:0.221:2
chr1	13670656	.	G	A,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:32:180:0.239:2	0/1:31:149:0.302:2	./.	./.	0/2:32:165:0.141:2	0/1:30:167:0.275:2	./.	0/1:31:185:0.196:2	./.	./.	0/1:32:173:0.273:2
chr1	13670687	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,67:29:184:0.366:2	0/1:101,64:28:165:0.388:2	0/1:29,8:30:37:0.216:2	0/1:149,26:29:175:0.149:2	./.	0/1:108,60:29:168:0.357:2	0/1:122,25:29:147:0.170:2	0/1:136,58:29:194:0.299:2	0/1:148,46:29:194:0.237:2	0/1:129,59:29:188:0.314:2	0/1:116,63:28:179:0.352:2
chr1	13670777	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,9:32:89:0.101:2	0/1:44,12:32:56:0.214:2	./.	0/1:66,10:32:76:0.132:2	0/1:36,10:33:46:0.217:2	0/1:66,21:33:87:0.241:2	0/1:28,8:33:36:0.222:2	0/1:55,16:32:71:0.225:2	0/1:32,28:34:60:0.467:2	0/1:67,18:31:85:0.212:2	0/1:80,19:31:99:0.192:2
chr1	13670869	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,24:29:73:0.329:2	0/1:40,11:29:51:0.216:2	0/1:3,3:30:6:0.500:2	0/1:52,26:28:78:0.333:2	0/1:37,15:30:52:0.288:2	0/1:46,31:29:77:0.403:2	0/1:26,20:29:46:0.435:2	0/1:55,19:29:74:0.257:2	0/1:40,28:30:68:0.412:2	0/1:44,44:28:88:0.500:2	0/1:64,27:30:91:0.297:2
chr1	13670952	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.
chr1	13670954	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,7:31:29:0.241:2	0/1:48,12:30:60:0.200:2	./.
chr1	13670960	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:31:28:0.107:2	./.	./.
chr1	13670989	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.
chr1	13671512	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,9:32:190:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr1	13671515	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,9:31:185:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr1	13671534	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,10:32:183:0.055:2	./.	./.	./.	./.	0/1:172,9:32:181:0.050:2	./.	./.
chr1	13671538	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,79:32:162:0.488:2	0/1:60,57:32:117:0.487:2	0/1:23,7:33:30:0.233:2	0/1:153,31:33:184:0.168:2	0/1:137,44:32:181:0.243:2	0/1:96,95:32:191:0.497:2	0/1:145,51:33:196:0.260:2	0/1:92,103:31:195:0.528:2	0/1:127,51:34:178:0.287:2	0/1:86,102:32:188:0.543:2	0/1:104,75:33:179:0.419:2
chr1	13671627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,33:30:121:0.273:2	./.	./.	./.	./.
chr1	13671653	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,55:28:115:0.478:2	0/1:37,31:27:68:0.456:2	0/1:3,3:29:6:0.500:2	0/1:51,33:29:84:0.393:2	0/1:54,32:28:86:0.372:2	0/1:57,46:28:103:0.447:2	0/1:41,57:27:98:0.582:2	0/1:59,57:28:116:0.491:2	0/1:32,65:30:97:0.670:2	0/1:52,74:29:126:0.587:2	0/1:83,37:29:120:0.308:2
chr1	13671690	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,7:33:59:0.121:2	0/1:29,18:33:48:0.383:2	./.	./.	./.	./.	./.	./.
chr1	13695621	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:173,20:31:194:0.104:2	0/1:138,10:32:148:0.068:2	0/1:30,7:31:37:0.189:2	0/1:179,18:31:197:0.091:2	0/1:186,14:30:200:0.070:2	0/1:187,11:30:199:0.056:2	0/1:187,12:32:199:0.060:2	0/1:177,20:31:197:0.102:2	0/1:191,6:27:197:0.030:2	0/1:176,22:31:198:0.111:2	0/1:182,10:30:192:0.052:2
chr1	13695624	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,111:32:194:0.572:2	./.	./.
chr1	13695685	rs201167498	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,78:32:184:0.424:2	0/1:118,71:32:189:0.376:2	0/1:68,44:32:112:0.393:2	0/1:118,75:32:193:0.389:2	0/1:131,61:32:192:0.318:2	0/1:124,68:32:192:0.354:2	0/1:143,55:32:198:0.278:2	0/1:127,64:32:191:0.335:2	0/1:116,74:33:190:0.389:2	0/1:99,88:32:187:0.471:2	0/1:108,82:32:190:0.432:2
chr1	13695770	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,10:32:180:0.056:2	./.	./.
chr1	13695787	rs202245256	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,124:33:188:0.660:2	0/1:69,116:33:185:0.627:2	0/1:42,63:33:105:0.600:2	0/1:65,123:33:188:0.654:2	0/1:62,128:33:190:0.674:2	0/1:57,137:33:194:0.706:2	0/1:76,118:33:194:0.608:2	0/1:62,131:33:193:0.679:2	0/1:28,149:34:178:0.842:2	0/1:44,151:33:195:0.774:2	0/1:71,115:33:186:0.618:2
chr1	13695810	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:32:190:0.026:2	./.	./.
chr1	13695816	rs148990958	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,149:32:188:0.793:2	0/1:37,139:32:176:0.790:2	0/1:28,77:31:105:0.733:2	0/1:29,162:31:191:0.848:2	0/1:29,162:31:191:0.848:2	0/1:25,169:31:194:0.871:2	0/1:34,158:32:192:0.823:2	0/1:35,156:31:191:0.817:2	0/1:18,170:32:188:0.904:2	0/1:19,171:31:190:0.900:2	0/1:36,156:32:192:0.813:2
chr1	13695974	rs142734546	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,50:31:161:0.311:2	0/1:92,59:32:151:0.391:2	0/1:29,23:31:52:0.442:2	0/1:113,69:31:183:0.379:2	0/1:121,64:31:185:0.346:2	0/1:127,59:31:186:0.317:2	0/1:99,60:30:159:0.377:2	0/1:121,48:31:169:0.284:2	0/1:113,68:32:181:0.376:2	0/1:103,66:32:171:0.391:2	0/1:125,53:32:180:0.298:2
chr1	13696022	rs201136502	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,16:28:160:0.100:2	0/1:138,14:31:152:0.092:2	0/1:23,3:32:26:0.115:2	0/1:160,13:32:174:0.075:2	0/1:161,17:30:178:0.096:2	0/1:163,10:31:173:0.058:2	0/1:161,18:31:179:0.101:2	0/1:168,8:31:176:0.045:2	0/1:84,66:31:150:0.440:2	0/1:141,14:32:156:0.090:2	0/1:142,24:30:166:0.145:2
chr1	13696029	rs200753201	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,12:31:151:0.079:2	0/1:140,12:32:152:0.079:2	./.	0/1:156,10:32:166:0.060:2	0/1:173,8:30:181:0.044:2	0/1:164,7:31:171:0.041:2	0/1:165,12:30:177:0.068:2	0/1:166,7:32:173:0.040:2	0/1:151,4:34:155:0.026:2	0/1:133,11:30:145:0.076:2	0/1:144,19:29:163:0.117:2
chr1	13696047	rs199733857	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,9:29:145:0.063:2	./.	./.	0/1:159,4:32:163:0.025:2	0/1:155,8:31:163:0.049:2	0/1:166,4:32:171:0.024:2	./.	./.	./.	0/1:143,7:29:150:0.047:2	0/1:144,6:28:150:0.040:2
chr1	13696054	rs200378484	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,8:30:154:0.052:2	./.	./.	0/1:167,4:32:171:0.023:2	0/1:150,5:30:155:0.032:2	./.	./.	./.	0/1:170,5:32:175:0.029:2	0/1:154,8:30:163:0.049:2	0/1:147,8:27:155:0.052:2
chr1	13696090	rs201393220	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,19:33:159:0.119:2	0/1:114,4:33:118:0.034:2	0/1:16,3:32:19:0.158:2	0/1:141,10:33:151:0.066:2	0/1:102,9:33:111:0.081:2	0/1:150,14:32:164:0.085:2	0/1:129,5:32:134:0.037:2	0/1:122,5:31:127:0.039:2	0/1:155,16:32:171:0.094:2	0/1:114,13:33:127:0.102:2	0/1:141,11:30:152:0.072:2
chr1	13697144	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,24:32:70:0.343:2	./.	./.
chr1	13697151	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,24:32:78:0.308:2	./.	./.
chr1	13697171	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,21:30:87:0.244:2	./.	./.
chr1	13697215	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,30:31:132:0.227:2	./.	./.
chr1	13697223	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,32:32:132:0.242:2	./.	./.
chr1	13697227	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,39:33:136:0.287:2	./.	./.
chr1	13697308	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,79:30:184:0.429:2	./.	./.
chr1	13697369	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,49:31:172:0.285:2	./.	./.
chr1	13697376	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,43:32:164:0.262:2	./.	./.
chr1	13697415	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,53:31:193:0.275:2	./.	./.
chr1	13697447	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	0/1:131,64:33:195:0.328:2	./.	./.
chr1	13697495	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:176,12:31:188:0.064:2	0/1:175,7:31:182:0.038:2	./.	0/1:183,8:32:191:0.042:2	./.	0/1:193,7:28:200:0.035:2	./.	./.	0/1:188,6:29:194:0.031:2	0/1:180,12:30:193:0.063:2	0/1:176,10:32:186:0.054:2
chr1	13697497	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:175,13:32:188:0.069:2	0/1:175,7:31:182:0.038:2	./.	0/1:183,8:32:191:0.042:2	./.	0/1:193,7:29:200:0.035:2	./.	0/1:193,4:32:197:0.020:2	0/1:189,6:32:195:0.031:2	0/1:177,12:29:190:0.063:2	0/1:180,10:32:190:0.053:2
chr1	13697577	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,51:33:157:0.325:2	./.	./.
chr1	13697598	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,27:32:120:0.225:2	./.	./.	./.	./.	0/1:106,23:34:129:0.178:2	./.	./.
chr1	13697604	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:28:7:0.429:2	0/1:75,40:28:115:0.348:2	0/1:64,27:27:91:0.297:2	./.	./.	./.	./.	./.	./.
chr1	13697611	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,23:32:107:0.215:2	./.	./.	./.	./.	0/1:90,20:34:110:0.182:2	0/1:100,31:33:131:0.237:2	./.
chr1	13697613	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,31:32:129:0.240:2	./.
chr1	13698217	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:31:18:0.333:2	0/1:130,56:31:186:0.301:2	0/1:128,49:31:177:0.277:2	./.	./.	./.	./.	0/1:140,49:31:189:0.259:2	0/1:120,48:31:168:0.286:2
chr1	13698238	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,33:31:165:0.200:2	./.	./.	./.	./.	0/1:134,33:33:167:0.198:2	0/1:156,25:32:181:0.138:2	./.
chr1	13698246	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,48:32:134:0.358:2	0/1:61,33:32:94:0.351:2	0/1:9,5:32:14:0.357:2	0/1:88,66:33:154:0.429:2	0/1:99,61:32:160:0.381:2	0/1:93,58:32:151:0.384:2	0/1:71,74:33:145:0.510:2	0/1:110,54:32:164:0.329:2	0/1:104,60:34:164:0.366:2	0/1:96,77:32:173:0.445:2	0/1:93,49:32:142:0.345:2
chr1	13698269	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,39:32:161:0.242:2	./.	./.
chr1	13698339	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,11:31:63:0.175:2	./.	./.	./.	./.	./.
chr1	13716154	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:31:53:0.528:2	./.	./.	./.
chr1	13716159	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,6:31:66:0.091:2	./.	./.	./.	./.	0/1:41,6:32:47:0.128:2	./.	./.
chr1	13716842	rs200830320	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,36:32:100:0.360:2	./.	./.
chr1	13716855	rs201841215	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,45:33:122:0.369:2	./.	./.
chr1	13717105	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,5:32:50:0.100:2	./.	./.	0/1:99,6:34:105:0.057:2	./.	0/1:100,4:33:104:0.038:2	./.
chr1	13717111	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,5:32:51:0.098:2	./.	./.	0/1:95,4:32:99:0.040:2	./.	0/1:101,4:33:105:0.038:2	./.
chr1	13717117	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	0/1:100,4:32:104:0.038:2	./.
chr1	13717120	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,10:30:154:0.065:2	./.	./.
chr1	13717195	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.	./.
chr1	13717217	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.
chr1	13717263	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,50:32:104:0.485:2	./.	./.
chr1	13718418	rs201071276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:32:195:0.026:2	./.	./.	./.
chr1	13718425	rs201387011	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,9:33:186:0.048:2	./.	./.
chr1	13718426	rs200149212	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,9:32:181:0.050:2	./.	./.
chr1	13718460	rs200509275	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,9:30:166:0.054:2	./.	./.	./.	0/1:115,8:30:123:0.065:2	./.	./.	./.
chr1	13718539	rs200523455	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,19:27:20:0.950:2	0/1:5,9:29:14:0.643:2	./.	./.	0/1:12,7:29:19:0.368:2	0/1:5,12:25:17:0.706:2	0/1:169,8:29:177:0.045:2	./.	./.	0/1:12,13:28:25:0.520:2	0/1:189,7:28:196:0.036:2
chr1	13718590	rs199666818	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,69:32:191:0.361:2	0/1:83,4:30:87:0.046:2	./.
chr1	13718595	rs200660838	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:31:90:0.056:2	./.
chr1	13718602	rs372895950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,72:32:191:0.377:2	./.	./.
chr1	13718644	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,82:31:135:0.607:2	./.	./.	./.	./.
chr1	13744712	rs199886862	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,92:32:93:0.989:2	0/1:0,36:32:36:1.00:2	./.	0/1:57,54:32:111:0.486:2	./.	./.	0/1:79,60:32:139:0.432:2	0/1:68,48:32:116:0.414:2	0/1:58,62:33:120:0.517:2	./.	0/1:65,53:32:118:0.449:2
chr1	13747401	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:29:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr1	13747412	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	13747458	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,5:32:100:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr1	13747477	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,5:31:119:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr1	13747667	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,89:33:155:0.574:2	./.	./.
chr1	13802325	rs3013105	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:33:5:0.600:2	0/1:32,33:32:65:0.508:2	./.	0/1:27,22:31:49:0.449:2	0/1:48,44:33:92:0.478:2	0/1:3,74:31:77:0.961:2	./.	./.	0/1:0,56:32:56:1.00:2
chr1	13802437	rs3013106	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,59:32:144:0.410:2	./.	0/1:103,89:32:192:0.464:2	0/1:180,4:34:184:0.022:2	0/1:93,80:33:173:0.462:2	./.	./.	0/1:85,76:33:161:0.472:2
chr1	13910417	rs355025	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,25:32:26:0.962:2	0/1:0,14:31:14:1.00:2	./.	0/1:9,11:31:20:0.550:2	./.	0/1:0,37:31:37:1.00:2	./.	0/1:13,9:31:22:0.409:2	0/1:8,10:32:18:0.556:2	0/1:14,8:30:22:0.364:2	0/1:0,18:32:18:1.00:2
chr1	13940864	rs2486188	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:32:148:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,183:32:184:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,174:33:175:1.00:2	0/1:3,170:32:173:0.983:2	0/1:0,154:32:154:1.00:2
chr1	14075880	rs75417771	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,40:31:65:0.615:2	./.	./.	./.	./.
chr1	14105139	rs2076324	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,16:33:40:0.400:2	0/1:16,5:31:21:0.238:2	./.	./.	0/1:17,17:32:34:0.500:2	0/1:32,14:30:46:0.304:2	./.	./.	./.	0/1:0,29:32:29:1.00:2	0/1:1,37:32:38:0.974:2
chr1	14105298	rs1203678	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,39:32:83:0.470:2	0/1:26,23:32:49:0.469:2	0/1:6,6:32:12:0.500:2	./.	0/1:40,31:30:71:0.437:2	0/1:36,35:31:71:0.493:2	./.	./.	./.	0/1:0,45:33:45:1.00:2	0/1:0,108:32:108:1.00:2
chr1	14107360	rs41269807	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:27:16:0.625:2	./.	./.	0/1:49,24:27:73:0.329:2	./.	./.	./.	./.	./.
chr1	14107946	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.
chr1	14109114	rs1203651	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,20:30:41:0.488:2	0/1:4,4:26:8:0.500:2	0/1:3,5:32:8:0.625:2	./.	0/1:17,21:31:38:0.553:2	0/1:8,18:31:27:0.692:2	./.	./.	./.	0/1:0,38:30:38:1.00:2	0/1:0,47:30:47:1.00:2
chr1	14143003	rs1046331	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,21:30:21:1.00:2	0/1:0,5:30:5:1.00:2	0/1:32,11:30:43:0.256:2	0/1:0,48:29:48:1.00:2	0/1:0,56:28:56:1.00:2	0/1:47,20:31:67:0.299:2	0/1:0,53:29:53:1.00:2	0/1:31,18:31:49:0.367:2	0/1:19,24:29:43:0.558:2	0/1:0,46:29:46:1.00:2
chr1	14149622	rs2697968	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,29:32:83:0.349:2	0/1:23,21:30:44:0.477:2	0/1:0,6:30:6:1.00:2	0/1:74,73:31:147:0.497:2	0/1:1,72:31:73:0.986:2	0/1:3,100:30:103:0.971:2	0/1:46,53:30:99:0.535:2	0/1:1,100:31:101:0.990:2	0/1:57,41:31:98:0.418:2	0/1:0,62:31:62:1.00:2	0/1:2,105:31:107:0.981:2
chr1	14220186	rs1358577	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:33:21:0.571:2	./.	0/1:75,84:32:159:0.528:2	./.	0/1:106,90:31:196:0.459:2	0/1:2,168:32:170:0.988:2	0/1:75,83:33:158:0.525:2	./.	./.
chr1	14507057	rs10928050	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.	0/1:93,79:32:172:0.459:2	0/1:73,61:33:134:0.455:2	0/1:0,158:32:158:1.00:2	./.	0/1:81,90:32:171:0.526:2	./.
chr1	15386680	rs79034042	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,6:32:46:0.130:2	./.	./.	0/1:56,5:27:61:0.082:2	0/1:51,9:21:60:0.150:2	0/1:65,6:25:71:0.085:2	0/1:48,8:23:56:0.143:2	0/1:55,6:26:61:0.098:2	./.	./.	./.
chr1	15390100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr1	15429956	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.
chr1	15438990	rs10803354	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:30:17:1.00:2	0/1:106,67:31:173:0.387:2	0/1:84,79:30:163:0.485:2	./.	./.	0/1:0,189:31:189:1.00:2	0/1:78,106:32:184:0.576:2	0/1:62,97:30:159:0.610:2	0/1:85,92:31:177:0.520:2
chr1	15441029	rs34135602	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,79:30:158:0.500:2	./.	./.
chr1	15495110	rs78615461	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,86:33:162:0.534:2	0/1:42,42:32:84:0.500:2	./.	./.	./.	0/1:111,77:32:188:0.410:2	0/1:115,81:33:196:0.413:2	./.	./.	./.	./.
chr1	15497727	rs6429722	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,76:32:77:1.00:2	0/1:42,31:32:73:0.425:2	0/1:1,84:32:85:0.988:2	0/1:0,73:32:73:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,90:32:90:1.00:2
chr1	15541607	rs3820065	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:29:29:0.379:2	./.	./.	./.	./.	./.	./.	./.
chr1	15546077	rs3753313	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,31:30:54:0.574:2	0/1:15,14:30:29:0.483:2	./.	0/1:17,18:32:35:0.514:2	0/1:14,26:32:40:0.650:2	0/1:2,36:32:38:0.947:2	./.	0/1:0,58:31:58:1.00:2
chr1	15599025	rs75432354	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:30:53:0.434:2	./.	./.	./.	./.	0/1:1,62:32:63:0.984:2
chr1	15616018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,77:30:131:0.588:2	./.	./.	./.	./.	./.	./.
chr1	15616139	rs486557	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:25,23:30:48:0.479:2	0/1:10,10:32:20:0.500:2	0/1:5,4:30:9:0.444:2	./.	./.	0/1:23,40:30:63:0.635:2	0/1:0,33:30:33:1.00:2	./.	0/1:0,59:30:59:1.00:2	./.	./.
chr1	15653563	rs3765357	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,68:31:155:0.439:2	0/1:44,39:32:83:0.470:2	0/1:20,6:30:26:0.231:2	0/1:106,80:31:186:0.430:2	0/1:109,85:30:194:0.438:2	./.	./.	0/1:102,88:31:190:0.463:2	./.	0/1:97,67:31:164:0.409:2	0/1:97,57:31:154:0.370:2
chr1	15668276	rs763821	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,56:32:101:0.554:2	0/1:30,26:32:56:0.464:2	0/1:0,9:32:9:1.00:2	0/1:57,46:32:103:0.447:2	0/1:47,27:32:74:0.365:2	./.	./.	0/1:74,64:32:139:0.464:2	./.	0/1:61,34:32:95:0.358:2	0/1:69,59:32:128:0.461:2
chr1	15687059	rs4661330	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,35:33:67:0.522:2	./.	./.	0/1:29,25:33:54:0.463:2	./.	./.	0/1:22,25:33:47:0.532:2	./.
chr1	15702130	rs17368978	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:33:19:0.474:2
chr1	15708540	rs1010294	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,87:28:194:0.448:2	0/1:98,97:30:195:0.497:2	./.	0/1:103,87:28:190:0.458:2
chr1	15723843	rs2294490	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,61:31:61:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:2,34:30:36:0.944:2	0/1:22,30:31:52:0.577:2	0/1:24,14:31:38:0.368:2	0/1:33,31:31:64:0.484:2	./.	0/1:1,49:31:50:0.980:2	./.
chr1	15754484	rs2473356	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,18:32:33:0.545:2	0/1:10,6:32:16:0.375:2	0/1:0,4:34:4:1.00:2	0/1:18,35:33:53:0.660:2	0/1:0,27:31:27:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,17:31:18:0.944:2	0/1:22,15:31:37:0.405:2	0/1:0,33:32:33:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,23:32:23:1.00:2
chr1	15767036	rs497078	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,92:31:187:0.492:2	./.	./.	0/1:58,45:32:103:0.437:2	./.
chr1	15768997	rs41307798	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	./.	./.
chr1	15783222	rs2303195	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:31:92:0.478:2	./.	./.	./.	./.
chr1	15789297	rs3815787	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,12:31:24:0.500:2	0/1:102,87:30:189:0.460:2	./.	0/1:79,74:31:153:0.484:2	0/1:104,50:30:154:0.325:2	0/1:101,87:30:189:0.463:2	0/1:101,87:31:188:0.463:2	./.	0/1:63,69:30:132:0.523:2
chr1	15789998	rs201775179	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,8:33:100:0.080:2	0/1:38,4:32:42:0.095:2	./.	0/1:100,10:31:110:0.091:2	0/1:121,8:30:129:0.062:2	0/1:109,12:31:121:0.099:2	./.	./.	./.	0/1:71,9:30:80:0.113:2	./.
chr1	15790013	rs3181471	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,36:30:83:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr1	15793913	rs1042010	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:31:38:0.474:2	0/1:19,32:31:51:0.627:2	0/1:18,10:32:28:0.357:2	./.	0/1:19,16:31:35:0.457:2
chr1	15802996	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:125:0.032:2	./.	./.	./.
chr1	15802999	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.
chr1	15807620	rs200158570	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:50,3:33:53:0.057:2	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	15808198	rs7520335	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,51:33:125:0.408:2	0/1:41,37:32:78:0.474:2	./.	0/1:80,68:32:148:0.459:2	0/1:99,48:33:147:0.327:2	0/1:61,56:32:117:0.479:2	./.	./.	./.	0/1:73,62:34:135:0.459:2	./.
chr1	15808767	rs3820071	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,32:32:52:0.615:2	0/1:17,9:32:26:0.346:2	./.	0/1:24,24:32:48:0.500:2	0/1:22,22:32:44:0.500:2	0/1:28,31:31:59:0.525:2	./.	./.	./.	0/1:24,45:32:69:0.652:2	./.
chr1	15808872	rs3766160	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,58:31:109:0.532:2	0/1:34,29:32:63:0.460:2	./.	0/1:72,68:30:140:0.486:2	0/1:51,55:31:106:0.519:2	0/1:98,81:31:180:0.453:2	./.	./.	./.	0/1:57,72:31:129:0.558:2	./.
chr1	15809876	rs10927792	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,19:33:72:0.264:2	0/1:17,12:33:29:0.414:2	./.	0/1:55,30:32:85:0.353:2	0/1:71,55:32:126:0.437:2	0/1:68,39:32:107:0.364:2	./.	./.	./.	0/1:38,38:32:76:0.500:2	./.
chr1	15809891	rs200410579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,9:29:73:0.123:2	./.	./.	./.	./.	./.	./.	./.
chr1	15812432	rs6429745	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,134:29:134:1.00:2	0/1:0,105:30:106:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,64:28:64:1.00:2
chr1	15821834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,6:33:168:0.036:2	./.	./.	./.
chr1	15832543	rs1052576	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,51:28:113:0.451:2	0/1:44,38:29:82:0.463:2	0/1:9,16:29:25:0.640:2	0/1:75,88:29:163:0.540:2	0/1:75,60:29:135:0.444:2	0/1:88,81:29:169:0.479:2	0/1:89,59:29:148:0.399:2	0/1:2,153:29:155:0.987:2	0/1:96,76:30:172:0.442:2	0/1:67,73:29:140:0.521:2	./.
chr1	15834360	rs2020902	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,11:32:42:0.262:2	0/1:25,16:32:41:0.390:2	0/1:18,18:33:36:0.500:2	./.	./.
chr1	15844615	rs1132312	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,25:27:76:0.329:2	0/1:25,28:28:53:0.528:2	0/1:5,4:28:9:0.444:2	0/1:49,45:28:94:0.479:2	0/1:56,37:29:93:0.398:2	0/1:49,59:29:108:0.546:2	0/1:34,37:30:71:0.521:2	0/1:1,92:29:93:0.989:2	0/1:62,55:29:118:0.470:2	0/1:45,27:27:72:0.375:2	./.
chr1	15850603	rs4645983	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	0/1:0,13:27:13:1.00:2	0/1:2,3:32:5:0.600:2	./.	./.
chr1	15850613	rs1052571	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,5:30:5:1.00:2	0/1:6,4:27:10:0.400:2	./.	0/1:6,4:32:10:0.400:2	0/1:0,16:29:16:1.00:2	0/1:3,5:32:8:0.625:2	0/1:0,4:21:4:1.00:2	./.
chr1	15860803	rs11583306	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,47:32:100:0.470:2	0/1:1,109:32:110:0.991:2	0/1:57,60:33:117:0.513:2	./.	./.
chr1	15874866	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,64:30:147:0.435:2	./.	./.	./.	./.	./.
chr1	15888644	rs143037370	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,83:31:193:0.430:2	0/1:120,65:31:185:0.351:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	15892415	rs2236215	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:31:101:0.436:2	0/1:47,31:30:78:0.397:2	0/1:0,81:30:81:1.00:2	0/1:48,48:31:96:0.500:2	./.	./.
chr1	15904318	rs11544523	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,48:31:89:0.539:2	0/1:2,82:32:84:0.976:2	0/1:59,45:32:104:0.433:2	./.	./.
chr1	15905471	rs116813534	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,32:31:54:0.593:2	./.	./.	./.	./.
chr1	15905501	rs41270261	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	0/1:36,41:32:77:0.532:2	0/1:20,37:32:57:0.649:2	./.	./.
chr1	15909744	rs11580170	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:31:58:0.500:2	0/1:19,20:32:39:0.513:2	0/1:4,49:32:53:0.925:2	0/1:21,25:33:46:0.543:2	./.	./.
chr1	15909850	rs6429757	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,27:30:47:0.574:2	0/1:10,9:29:19:0.474:2	0/1:1,3:29:4:0.750:2	0/1:24,21:30:45:0.467:2	0/1:26,19:31:45:0.422:2	0/1:0,57:30:57:1.00:2	0/1:26,16:29:42:0.381:2	0/1:0,56:30:56:1.00:2	0/1:24,17:31:41:0.415:2	0/1:19,13:32:32:0.406:2	./.
chr1	15953223	rs77782333	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,10:15:83:0.120:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	15959977	rs3795763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:32:37:0.324:2	0/1:25,15:32:40:0.375:2	0/1:0,44:31:44:1.00:2	0/1:21,21:33:42:0.500:2	./.	./.
chr1	15986547	rs3766163	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	0/1:33,23:31:56:0.411:2	0/1:2,53:32:55:0.964:2	0/1:31,26:34:57:0.456:2	./.	./.
chr1	15986868	rs35795032	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:32:89:0.483:2	./.	./.	./.
chr1	16042766	rs12091750	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:29:16:0.250:2	0/1:16,9:31:25:0.360:2	0/1:13,7:31:20:0.350:2	./.	./.	./.
chr1	16044401	rs16851970	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,36:29:79:0.456:2	0/1:71,34:30:105:0.324:2	./.	./.	./.	./.
chr1	16045099	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,9:30:147:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	16046324	rs115985482	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:31:93:0.430:2	./.	./.	./.	./.
chr1	16051990	rs61738982	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,31:27:51:0.608:2	./.	./.	./.	./.
chr1	16056364	rs3817269	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,20:33:20:1.00:2	./.	0/1:17,17:32:34:0.500:2	./.	0/1:15,16:32:31:0.516:2	0/1:13,18:33:31:0.581:2	./.	./.	./.	./.
chr1	16057029	rs116455686	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:28:36:0.417:2	0/1:9,4:23:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16064411	rs937592	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,138:33:142:0.979:2	0/1:2,85:31:87:0.977:2	./.	0/1:92,89:32:181:0.492:2	./.	0/1:89,97:32:186:0.522:2	0/1:110,77:32:187:0.412:2	./.	./.	./.	./.
chr1	16069612	rs142233857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:31:20:0.600:2	./.
chr1	16069644	rs11584945	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:14,17:30:31:0.548:2	./.	./.	0/1:7,7:30:14:0.500:2	./.	0/1:22,12:32:34:0.353:2	0/1:10,14:31:24:0.583:2	./.
chr1	16070871	rs7511651	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.
chr1	16070912	rs7525747	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	./.	./.	0/1:10,10:30:20:0.500:2	0/1:3,6:32:9:0.667:2	./.
chr1	16095031	rs140170023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:32:80:0.438:2	./.	./.	./.	./.
chr1	16096934	rs10927851	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:30:6:0.667:2	0/1:24,31:27:55:0.564:2	0/1:62,74:29:136:0.544:2	0/1:61,40:30:101:0.396:2	./.	./.	0/1:46,26:28:72:0.361:2	0/1:39,35:29:74:0.473:2	0/1:0,52:30:52:1.00:2
chr1	16101217	rs41268337	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,39:31:79:0.494:2	0/1:25,26:32:51:0.510:2	0/1:9,7:31:16:0.438:2	0/1:71,47:32:118:0.398:2	0/1:71,60:31:131:0.458:2	./.	./.	./.	0/1:56,52:32:108:0.481:2	0/1:55,47:32:102:0.461:2	./.
chr1	16111117	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2	./.
chr1	16133978	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.
chr1	16133987	rs7417535	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	0/1:42,47:32:89:0.528:2	./.	./.	./.
chr1	16134072	rs61744357	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:31:56:0.482:2	./.	./.	./.
chr1	16134129	rs61738972	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,27:31:75:0.360:2	./.	./.	./.
chr1	16134166	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	0/1:63,5:31:68:0.074:2
chr1	16202838	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr1	16255644	rs848208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:30:40:0.450:2	./.	./.	./.	./.	./.
chr1	16256007	rs848209	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:33:62:0.452:2	./.	0/1:1,72:32:73:0.986:2	./.	0/1:50,37:32:87:0.425:2	0/1:0,104:33:104:1.00:2
chr1	16259813	rs848210	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:25:37:0.432:2	./.	0/1:0,48:29:48:1.00:2	./.	0/1:7,13:30:20:0.650:2	0/1:0,46:29:46:1.00:2
chr1	16260916	rs848211	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:32:85:0.447:2	./.	./.	./.	./.	./.
chr1	16261814	rs41269151	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,66:30:160:0.413:2	./.	./.	./.
chr1	16262404	rs61749277	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,50:29:75:0.667:2	./.	./.	./.	./.	./.
chr1	16263696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.
chr1	16264330	rs199632433	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:32:83:0.048:2	0/1:73,10:26:83:0.120:2	0/1:58,6:27:64:0.094:2	0/1:77,8:29:85:0.094:2	0/1:73,8:30:81:0.099:2	./.	./.	0/1:53,9:30:62:0.145:2
chr1	16265308	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.
chr1	16271260	rs9661939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,49:31:101:0.485:2	./.	0/1:33,33:31:66:0.500:2	0/1:1,38:31:39:0.974:2
chr1	16271681	rs79017841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.	./.	./.
chr1	16272250	rs848217	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:28:28:0.321:2	./.	0/1:0,13:27:13:1.00:2	./.	0/1:16,8:27:24:0.333:2	0/1:0,19:26:19:1.00:2
chr1	16330816	rs1763617	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,79:30:141:0.564:2	./.	./.	./.	./.	0/1:66,61:29:127:0.480:2
chr1	16332571	rs1763612	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,43:31:83:0.518:2
chr1	16332679	rs3738646	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:29:67:0.448:2	./.	./.	./.	./.	./.
chr1	16342237	rs1739840	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:1,10:30:11:0.909:2	0/1:0,3:30:3:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,14:29:14:1.00:2	0/1:16,7:29:23:0.304:2	0/1:0,4:28:4:1.00:2	./.	0/1:0,12:31:12:1.00:2	0/1:11,3:32:14:0.214:2	0/1:3,4:28:7:0.571:2
chr1	16344360	rs732286	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:31:47:0.979:2	0/1:0,30:31:30:1.00:2	0/1:0,10:30:10:1.00:2	0/1:2,70:32:72:0.972:2	0/1:0,71:31:72:1.00:2	0/1:40,43:32:83:0.518:2	0/1:1,78:32:79:0.987:2	./.	0/1:0,69:32:69:1.00:2	0/1:43,30:31:73:0.411:2	0/1:32,33:31:66:0.508:2
chr1	16344402	rs945416	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,36:32:37:0.973:2	0/1:0,18:32:18:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,52:31:52:1.00:2	0/1:26,17:32:43:0.395:2	0/1:2,69:32:71:0.972:2	./.	0/1:0,54:33:54:1.00:2	0/1:22,25:32:47:0.532:2	0/1:24,28:32:52:0.538:2
chr1	16344466	rs3738640	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:28:28:0.679:2	./.	./.	./.	./.	./.
chr1	16344494	rs1572381	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:29:10:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,10:30:10:1.00:2	0/1:15,7:30:22:0.318:2	0/1:0,10:31:11:1.00:2	./.	0/1:0,11:33:11:1.00:2	0/1:8,6:30:14:0.429:2	./.
chr1	16344625	rs945417	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,6:34:6:1.00:2	0/1:1,48:33:49:0.980:2	0/1:1,30:33:31:0.968:2	0/1:46,31:33:77:0.403:2	./.	./.	0/1:0,54:33:54:1.00:2	0/1:45,19:33:64:0.297:2	0/1:57,25:32:82:0.305:2
chr1	16344664	rs872222	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,15:27:32:0.484:2	0/1:7,9:30:16:0.563:2	0/1:0,4:30:4:1.00:2	0/1:2,52:29:54:0.963:2	0/1:1,40:31:41:0.976:2	0/1:45,24:30:69:0.348:2	0/1:0,34:29:34:1.00:2	./.	0/1:0,53:30:53:1.00:2	0/1:46,20:29:66:0.303:2	./.
chr1	16344683	rs872221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,19:32:65:0.292:2
chr1	16344684	rs56783248	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,34:30:57:0.596:2	./.	./.	./.	./.	./.
chr1	16345735	rs1544131	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,48:32:114:0.421:2
chr1	16351275	rs10927887	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:29:56:1.00:2	0/1:1,34:28:35:0.971:2	0/1:0,5:32:5:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,78:28:78:1.00:2	0/1:54,45:29:99:0.455:2	0/1:0,67:29:67:1.00:2	./.	0/1:0,74:30:74:1.00:2	0/1:47,28:31:75:0.373:2	0/1:33,31:28:64:0.484:2
chr1	16353054	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.	./.
chr1	16353060	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.	./.	./.
chr1	16353187	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,16:31:170:0.095:2	0/1:97,7:31:104:0.067:2	0/1:24,12:31:36:0.333:2	0/1:153,42:32:196:0.215:2	0/1:121,76:31:197:0.386:2	0/1:146,47:31:193:0.244:2	0/1:131,62:32:193:0.321:2	0/1:137,56:31:193:0.290:2	0/1:146,49:32:195:0.251:2	0/1:151,42:32:193:0.218:2	0/1:147,46:32:193:0.238:2
chr1	16353225	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,10:31:187:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr1	16353256	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,12:29:97:0.124:2	0/1:60,5:31:65:0.077:2	0/1:23,7:28:30:0.233:2	0/1:104,6:32:110:0.055:2	0/1:90,19:32:110:0.174:2	0/1:102,9:29:111:0.081:2	0/1:105,12:29:118:0.103:2	0/1:111,7:30:118:0.059:2	0/1:89,11:33:100:0.110:2	0/1:101,18:32:119:0.151:2	0/1:104,9:32:113:0.080:2
chr1	16353257	rs371660947	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,12:23:97:0.124:2	0/1:60,5:26:65:0.077:2	0/1:21,8:24:29:0.276:2	0/1:104,5:27:109:0.046:2	0/1:91,19:28:110:0.173:2	0/1:101,9:26:110:0.082:2	0/1:105,10:27:115:0.087:2	0/1:110,7:26:117:0.060:2	0/1:88,11:27:99:0.111:2	0/1:98,18:27:116:0.155:2	0/1:104,9:25:113:0.080:2
chr1	16354394	rs200268763	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,71:32:184:0.386:2	0/1:134,53:31:187:0.283:2	0/1:61,59:31:120:0.492:2	0/1:136,57:31:193:0.295:2	0/1:134,65:31:199:0.327:2	0/1:127,63:32:190:0.332:2	0/1:127,67:31:194:0.345:2	0/1:134,58:32:192:0.302:2	0/1:134,61:32:195:0.313:2	0/1:126,70:32:197:0.357:2	0/1:121,69:32:191:0.363:2
chr1	16354590	rs12126269	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,64:31:160:0.400:2	0/1:46,37:31:85:0.446:2	./.	./.	./.	0/1:86,59:31:145:0.407:2	./.	./.	./.	./.	./.
chr1	16355638	rs79751787	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:31:43:0.488:2
chr1	16355728	rs58150371	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,22:32:84:0.262:2	0/1:83,33:32:116:0.284:2	./.	./.	./.	0/1:52,20:33:72:0.278:2	./.
chr1	16356497	rs7411607	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:30:24:0.125:2	0/1:13,5:31:18:0.278:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16356501	rs1805152	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,23:29:24:0.958:2	0/1:0,17:30:17:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,51:30:51:1.00:2	0/1:41,28:31:69:0.406:2	0/1:0,73:30:73:1.00:2	./.	0/1:0,57:31:57:1.00:2	0/1:24,31:30:55:0.564:2	0/1:28,26:30:54:0.481:2
chr1	16356522	rs34471231	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,5:31:27:0.185:2	0/1:14,5:32:19:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16356531	rs35747151	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:30:24:0.125:2	0/1:14,4:31:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16356533	rs35154011	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16357147	rs12140223	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,42:31:104:0.404:2	0/1:25,31:32:56:0.554:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16358271	rs199587920	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,11:31:193:0.057:2	0/1:152,5:32:157:0.032:2	0/1:180,7:31:187:0.037:2	0/1:187,5:29:192:0.026:2	./.	./.	./.
chr1	16358311	rs139001368	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,4:32:152:0.026:2	0/1:146,11:33:157:0.070:2	0/1:131,6:30:137:0.044:2	0/1:159,5:33:165:0.030:2	./.	./.	./.	./.
chr1	16358323	rs201589941	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,7:32:132:0.053:2	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.
chr1	16358932	rs10803407	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:90:1.00:2	0/1:1,64:32:65:0.985:2	0/1:0,18:32:18:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,128:32:128:1.00:2	0/1:162,7:33:169:0.041:2	0/1:0,97:33:97:1.00:2	0/1:68,46:33:114:0.404:2	0/1:66,42:30:108:0.389:2
chr1	16359712	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.
chr1	16360080	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,13:21:93:0.140:2	./.	0/1:91,13:17:104:0.125:2	./.	0/1:107,11:15:120:0.093:2	0/1:81,12:13:95:0.129:2	./.	./.
chr1	16360083	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,9:16:95:0.095:2	./.	./.	./.	./.	./.	./.	./.
chr1	16360086	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,15:13:107:0.140:2	./.	./.
chr1	16360090	rs111445697	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,16:29:140:0.114:2	./.	./.	0/1:94,9:28:103:0.087:2
chr1	16360137	rs12746751	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,49:32:114:0.430:2	0/1:22,32:30:54:0.593:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16360144	rs371202740	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,7:33:182:0.038:2	0/1:144,8:32:152:0.053:2	0/1:162,9:32:171:0.053:2	0/1:175,5:29:180:0.028:2	0/1:173,11:31:184:0.060:2	0/1:168,10:32:178:0.056:2	./.	0/1:152,6:32:158:0.038:2
chr1	16371067	rs2015352	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,19:31:37:0.514:2	0/1:11,16:32:27:0.593:2	0/1:1,8:30:9:0.889:2	0/1:0,48:32:48:1.00:2	0/1:2,76:32:78:0.974:2	0/1:25,22:30:47:0.468:2	0/1:0,51:32:51:1.00:2	0/1:42,83:31:125:0.664:2	0/1:0,62:33:62:1.00:2	0/1:2,56:31:58:0.966:2	0/1:16,32:30:48:0.667:2
chr1	16373124	rs5257	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,34:30:85:0.400:2	0/1:31,26:29:57:0.456:2	0/1:0,12:29:12:1.00:2	0/1:4,116:29:121:0.967:2	0/1:0,76:30:76:1.00:2	0/1:1,113:30:114:0.991:2	0/1:1,80:29:81:0.988:2	0/1:76,86:29:162:0.531:2	0/1:0,100:31:100:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,92:29:92:1.00:2
chr1	16374533	rs2014562	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,15:32:15:1.00:2	0/1:1,83:32:84:0.988:2	0/1:0,83:32:83:1.00:2	0/1:1,82:32:83:0.988:2	0/1:0,89:32:89:1.00:2	0/1:45,82:32:127:0.646:2	0/1:0,83:33:83:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,75:32:75:1.00:2
chr1	16374994	rs1889788	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,74:32:167:0.443:2	0/1:75,37:32:112:0.330:2	0/1:10,28:31:38:0.737:2	0/1:64,97:31:161:0.602:2	0/1:60,124:31:184:0.674:2	0/1:49,127:31:176:0.722:2	0/1:67,113:32:180:0.628:2	0/1:92,99:31:191:0.518:2	0/1:61,120:32:181:0.663:2	0/1:67,116:32:183:0.634:2	0/1:56,129:32:185:0.697:2
chr1	16375032	rs121909132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,31:30:169:0.183:2	./.	./.	./.	./.	./.	./.	./.
chr1	16375063	rs1889789	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,78:31:90:0.867:2	0/1:12,82:31:94:0.872:2	0/1:3,26:32:29:0.897:2	0/1:23,84:31:107:0.785:2	0/1:18,105:31:123:0.854:2	0/1:15,108:31:123:0.878:2	0/1:24,89:31:113:0.788:2	0/1:58,78:30:136:0.574:2	0/1:18,103:32:121:0.851:2	0/1:15,93:31:108:0.861:2	0/1:15,82:30:97:0.845:2
chr1	16375064	rs1889790	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,78:26:90:0.867:2	0/1:12,80:27:92:0.870:2	0/1:3,26:27:29:0.897:2	0/1:22,84:27:106:0.792:2	0/1:17,105:26:122:0.861:2	0/1:15,108:25:123:0.878:2	0/1:24,88:25:112:0.786:2	0/1:57,78:25:135:0.578:2	0/1:18,100:27:119:0.847:2	0/1:13,93:26:106:0.877:2	0/1:15,82:25:98:0.845:2
chr1	16375510	rs11588392	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	./.	./.	./.
chr1	16376191	rs7367494	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,113:31:185:0.611:2	0/1:62,90:31:152:0.592:2	0/1:46,29:31:75:0.387:2	0/1:95,89:31:184:0.484:2	0/1:99,82:31:181:0.453:2	0/1:78,103:31:181:0.569:2	0/1:111,72:31:183:0.393:2	0/1:131,62:31:193:0.321:2	0/1:90,93:31:183:0.508:2	0/1:91,89:31:180:0.494:2	0/1:79,100:30:179:0.559:2
chr1	16376319	rs7368151	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:27:121:1.00:2	0/1:1,64:28:65:0.985:2	0/1:0,15:29:15:1.00:2	0/1:2,143:29:145:0.986:2	0/1:3,124:28:127:0.976:2	0/1:0,121:28:121:1.00:2	0/1:1,106:30:107:0.991:2	0/1:68,121:28:189:0.640:2	0/1:1,140:30:141:0.993:2	0/1:2,108:29:110:0.982:2	0/1:0,149:28:149:1.00:2
chr1	16377999	rs6650118	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,59:33:160:0.369:2	0/1:58,39:32:97:0.402:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16378000	rs6650119	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,59:32:159:0.371:2	0/1:60,39:31:99:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16378215	rs5252	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:32:56:0.482:2	0/1:20,12:32:32:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16378725	rs12140311	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,86:32:180:0.478:2	0/1:107,74:32:181:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16380196	rs5253	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,101:30:101:1.00:2	0/1:0,73:30:73:1.00:2	./.	0/1:0,177:30:177:1.00:2	0/1:1,193:30:194:0.995:2	0/1:1,177:30:178:0.994:2	0/1:2,182:30:184:0.989:2	0/1:0,185:30:185:1.00:2	0/1:0,170:31:170:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,130:30:130:1.00:2
chr1	16380243	rs2275166	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,90:30:91:0.989:2	0/1:0,69:30:69:1.00:2	0/1:0,25:31:25:1.00:2	0/1:96,71:31:167:0.425:2	0/1:1,120:31:121:0.992:2	0/1:0,151:30:151:1.00:2	0/1:0,102:31:102:1.00:2	0/1:122,42:31:164:0.256:2	0/1:0,145:32:145:1.00:2	0/1:0,105:30:105:1.00:2	./.
chr1	16380252	rs111663047	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,82:32:83:0.988:2	0/1:0,68:32:68:1.00:2	./.	0/1:87,69:32:156:0.442:2	0/1:0,113:31:113:1.00:2	0/1:1,143:31:144:0.993:2	0/1:1,90:31:91:0.989:2	0/1:121,43:32:164:0.262:2	0/1:0,130:32:130:1.00:2	0/1:1,102:31:103:0.990:2	./.
chr1	16383336	rs12746138	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,22:27:69:0.319:2	0/1:37,9:30:46:0.196:2	./.	0/1:0,49:31:49:1.00:2	0/1:0,31:31:31:1.00:2	0/1:1,38:31:40:0.974:2	0/1:0,31:31:31:1.00:2	0/1:63,53:30:116:0.457:2	0/1:0,26:32:26:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,55:30:55:1.00:2
chr1	16383348	rs61769892	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,40:28:80:0.500:2	./.	./.	./.	0/1:82,72:30:154:0.468:2	./.	./.	0/1:2,69:30:71:0.972:2
chr1	16383742	rs1057857	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,135:33:191:0.707:2	0/1:43,85:32:128:0.664:2	./.	0/1:108,87:33:195:0.446:2	0/1:99,89:31:188:0.473:2	0/1:79,112:32:191:0.586:2	0/1:94,92:32:186:0.495:2	0/1:2,178:32:180:0.989:2	0/1:97,94:34:191:0.492:2	0/1:70,125:32:195:0.641:2	0/1:70,114:31:184:0.620:2
chr1	16384970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:33:12:0.333:2
chr1	16384986	rs28496958	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,3:29:7:0.429:2	./.	./.	0/1:2,8:27:10:0.800:2	0/1:2,7:28:9:0.778:2	./.	0/1:7,9:27:16:0.563:2	./.	./.	./.	./.
chr1	16384998	rs1807285	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:29:9:0.333:2	0/1:3,3:30:6:0.500:2	./.	0/1:2,9:28:11:0.818:2	./.	./.	./.	./.
chr1	16384999	rs1807284	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:27:9:0.333:2	0/1:3,3:30:6:0.500:2	./.	0/1:2,9:28:11:0.818:2	./.	./.	./.	./.
chr1	16385042	rs77667563	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,4:23:20:0.200:2	./.	./.	0/1:7,8:32:15:0.533:2	0/1:3,3:30:6:0.500:2	./.	0/1:1,4:25:5:0.800:2	./.	./.	0/1:6,4:30:10:0.400:2	./.
chr1	16385131	rs1832151	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:131,54:28:185:0.292:2	0/1:106,41:30:147:0.279:2	./.	./.	./.	./.	./.	0/1:136,58:29:194:0.299:2	./.	./.	./.
chr1	16385175	rs17853748	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,59:31:188:0.314:2	0/1:106,78:31:184:0.424:2	0/1:53,24:31:77:0.312:2	0/1:2,159:31:161:0.988:2	0/1:1,161:31:163:0.994:2	0/1:77,101:30:178:0.567:2	0/1:1,158:31:159:0.994:2	0/1:129,61:31:190:0.321:2	0/1:0,150:32:150:1.00:2	0/1:34,130:31:165:0.793:2	0/1:98,66:31:164:0.402:2
chr1	16385178	rs80297394	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,73:31:176:0.415:2	./.	./.	./.	./.	./.
chr1	16385184	rs75273615	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,27:30:185:0.146:2	0/1:141,46:31:187:0.246:2	0/1:49,22:30:71:0.310:2	0/1:81,67:31:148:0.453:2	0/1:98,58:32:156:0.372:2	0/1:141,29:30:170:0.171:2	0/1:83,69:32:152:0.454:2	./.	0/1:60,70:31:130:0.538:2	0/1:108,39:31:147:0.265:2	./.
chr1	16386001	rs371920912	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,31:31:92:0.337:2	./.	./.	./.	./.	./.	./.
chr1	16386008	rs2863452	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,39:33:134:0.291:2	0/1:55,36:32:91:0.396:2	./.	0/1:1,142:32:143:0.993:2	0/1:1,84:31:85:0.988:2	0/1:0,156:32:156:1.00:2	0/1:4,122:33:127:0.968:2	0/1:81,89:33:170:0.524:2	0/1:1,98:33:99:0.990:2	0/1:0,109:33:109:1.00:2	0/1:1,105:32:106:0.991:2
chr1	16386065	rs61769893	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,12:31:130:0.092:2	./.	./.	./.	./.	0/1:118,36:32:154:0.234:2	./.	./.	./.	./.	./.
chr1	16386416	rs9442230	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,67:31:111:0.604:2	0/1:45,34:30:79:0.430:2	./.	0/1:2,119:30:121:0.983:2	0/1:0,124:30:124:1.00:2	0/1:2,152:30:154:0.987:2	0/1:0,72:30:72:1.00:2	0/1:40,110:30:150:0.733:2	0/1:0,110:31:110:1.00:2	0/1:2,90:31:92:0.978:2	0/1:0,54:31:54:1.00:2
chr1	16386447	rs11576236	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,111:30:111:1.00:2	0/1:0,72:30:72:1.00:2	./.	0/1:1,116:29:118:0.991:2	0/1:0,120:30:121:1.00:2	0/1:2,162:31:164:0.988:2	0/1:1,59:29:60:0.983:2	0/1:0,136:29:136:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,43:28:43:1.00:2
chr1	16386495	rs71510977	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,53:32:132:0.402:2	0/1:44,30:31:74:0.405:2	./.	0/1:105,48:31:153:0.314:2	0/1:60,105:31:166:0.636:2	0/1:42,110:31:152:0.724:2	0/1:57,64:30:121:0.529:2	./.	0/1:38,92:32:130:0.708:2	0/1:54,77:31:131:0.588:2	./.
chr1	16386501	rs200418963	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,10:26:140:0.071:2	./.	./.	./.	./.	0/1:154,9:29:163:0.055:2	./.	./.	./.	./.	./.
chr1	16388602	rs200579113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,12:31:63:0.190:2	./.	./.	./.
chr1	16388642	rs79991837	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	0/1:135,6:32:141:0.043:2	./.	0/1:119,4:31:123:0.033:2	./.	0/1:74,4:32:78:0.051:2	./.	./.
chr1	16388646	rs2863456	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,63:30:113:0.558:2	0/1:32,31:31:63:0.492:2	./.	0/1:1,89:30:90:0.989:2	0/1:3,130:30:133:0.977:2	0/1:0,105:31:105:1.00:2	0/1:1,116:31:117:0.991:2	0/1:1,59:31:60:0.983:2	0/1:0,73:31:73:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,49:31:49:1.00:2
chr1	16389026	rs2863458	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,56:29:105:0.533:2	./.	./.	./.	0/1:66,52:28:118:0.441:2	./.	./.	0/1:3,123:29:126:0.976:2
chr1	16390116	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	16451767	rs3754334	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:32:13:0.692:2	0/1:2,158:30:160:0.988:2	./.	./.	./.	0/1:80,60:31:140:0.429:2	./.	./.	0/1:51,42:30:93:0.452:2
chr1	16456763	rs35903225	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,86:32:175:0.491:2	./.	./.	./.	./.	./.	./.
chr1	16460339	rs6669624	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:29:36:0.528:2
chr1	16464673	rs2230597	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	0/1:2,6:31:8:0.750:2	./.	0/1:0,29:30:29:1.00:2	0/1:9,9:30:18:0.500:2	./.	./.	0/1:0,21:31:21:1.00:2	./.	0/1:4,6:30:10:0.600:2	0/1:3,4:32:7:0.571:2
chr1	16464854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.
chr1	16474880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.
chr1	16474932	rs145113491	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,14:12:92:0.152:2	./.	./.	./.	./.	./.	./.
chr1	16475123	rs6678616	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,9:30:25:0.360:2	0/1:9,10:31:19:0.526:2	./.	0/1:0,28:28:28:1.00:2	./.	./.	./.	0/1:1,33:28:35:0.971:2	./.	./.	0/1:5,8:28:13:0.615:2
chr1	16475126	rs6678618	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:7,10:32:17:0.588:2	./.	0/1:0,28:30:28:1.00:2	./.	./.	./.	0/1:1,33:30:34:0.971:2	./.	./.	0/1:5,9:31:14:0.643:2
chr1	16531263	rs61749279	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,34:32:77:0.442:2	./.	./.	./.	./.	./.	./.
chr1	16532498	rs41269185	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,171:32:175:0.977:2	./.	./.	./.	./.
chr1	16532803	rs221050	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2
chr1	16532848	rs221051	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:26:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:30:51:0.451:2
chr1	16533022	rs221052	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,3:30:4:0.750:2	0/1:1,2:33:3:0.667:2	0/1:0,2:29:2:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.
chr1	16534255	rs221057	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:33:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:30:59:0.424:2
chr1	16534646	rs221058	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:33:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	0/1:60,58:29:118:0.492:2
chr1	16535367	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:34:45:0.067:2
chr1	16543631	rs150891458	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,67:31:153:0.438:2	./.	./.	./.	./.	./.	./.
chr1	16559053	rs142028968	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,4:33:144:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	16577794	rs35196193	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,45:31:82:0.549:2	./.	./.	./.	./.	./.	./.
chr1	16577908	rs12069239	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:33:16:0.688:2	./.	0/1:48,41:32:89:0.461:2	./.	0/1:3,70:32:73:0.959:2	./.	./.	./.	./.
chr1	16641899	rs2273311	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,55:32:91:0.604:2	0/1:30,24:32:54:0.444:2	./.	0/1:0,106:32:106:1.00:2	0/1:50,50:32:100:0.500:2	0/1:0,109:32:109:1.00:2	./.	0/1:4,117:32:121:0.967:2	0/1:0,111:32:111:1.00:2	0/1:0,82:33:82:1.00:2	0/1:70,60:33:130:0.462:2
chr1	16730308	rs41269193	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:30:87:0.402:2	./.	0/1:56,37:30:93:0.398:2	0/1:38,27:30:65:0.415:2	./.
chr1	16731510	rs525409	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:33:56:0.536:2	0/1:28,13:32:41:0.317:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,35:33:95:0.368:2
chr1	16735629	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:31:95:0.505:2	./.	./.	./.
chr1	16736132	rs4661746	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:21,20:29:41:0.488:2	./.	./.	./.	./.	./.	0/1:20,20:28:40:0.500:2
chr1	16736138	rs146290198	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	0/1:17,13:29:30:0.433:2	./.	./.	./.	./.	./.
chr1	16767275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.
chr1	16890441	rs3863779	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:188,6:30:195:0.031:2	./.	0/1:57,5:31:62:0.081:2	0/1:150,43:31:193:0.223:2	0/1:165,26:31:191:0.136:2	0/1:142,55:31:197:0.279:2	./.	0/1:153,45:31:198:0.227:2	0/1:175,18:32:193:0.093:2	./.	0/1:173,20:32:193:0.104:2
chr1	16890475	rs200730231	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,30:30:188:0.161:2	./.
chr1	16890484	rs12117084	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:109,11:34:120:0.092:2	0/1:154,42:34:196:0.214:2	0/1:179,17:33:196:0.087:2	0/1:138,56:33:194:0.289:2	./.	0/1:149,44:32:193:0.228:2	0/1:178,17:34:195:0.087:2	./.	0/1:174,18:33:193:0.094:2
chr1	16890500	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,13:29:196:0.066:2	./.	./.	./.	0/1:188,5:30:193:0.026:2	./.	./.
chr1	16890534	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	0/1:184,6:30:190:0.032:2	0/1:189,6:31:195:0.031:2	./.	./.	./.
chr1	16890539	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:33:189:0.032:2	0/1:187,5:32:192:0.026:2	./.	./.	./.
chr1	16890589	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:31:178:0.028:2	./.	./.	./.	./.
chr1	16890598	rs2990550	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,75:32:153:0.493:2	0/1:102,51:31:153:0.333:2	0/1:36,49:31:85:0.576:2	0/1:73,93:31:166:0.560:2	0/1:85,67:31:152:0.441:2	0/1:106,69:31:175:0.394:2	0/1:99,61:31:160:0.381:2	0/1:70,83:30:153:0.542:2	0/1:97,72:32:170:0.426:2	0/1:87,85:31:172:0.494:2	0/1:51,92:31:143:0.643:2
chr1	16890602	rs2990551	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,28:32:152:0.184:2	0/1:139,18:31:157:0.115:2	0/1:57,18:31:75:0.240:2	0/1:159,14:32:173:0.081:2	0/1:130,22:31:152:0.145:2	./.	0/1:132,21:32:153:0.137:2	0/1:141,21:32:162:0.130:2	./.	0/1:109,63:32:172:0.366:2	0/1:86,58:32:144:0.403:2
chr1	16890607	rs200783506	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,5:32:151:0.033:2	0/1:154,5:32:159:0.031:2	0/1:51,18:32:69:0.261:2	0/1:153,12:32:165:0.073:2	0/1:139,7:32:146:0.048:2	./.	0/1:135,8:32:143:0.056:2	0/1:142,7:31:149:0.047:2	./.	0/1:157,10:32:167:0.060:2	0/1:126,15:31:141:0.106:2
chr1	16890639	rs1043750	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,52:30:151:0.344:2	0/1:94,45:31:139:0.324:2	0/1:32,9:30:41:0.220:2	0/1:107,21:30:128:0.164:2	0/1:122,8:30:130:0.062:2	0/1:69,73:29:142:0.514:2	0/1:70,32:30:102:0.314:2	0/1:92,41:30:133:0.308:2	0/1:116,42:31:158:0.266:2	0/1:116,19:31:135:0.141:2	0/1:46,73:31:119:0.613:2
chr1	16890644	rs2992339	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,41:32:154:0.266:2	0/1:105,34:32:139:0.245:2	0/1:17,16:32:33:0.485:2	0/1:89,43:32:132:0.326:2	0/1:111,20:30:131:0.153:2	./.	0/1:83,14:31:97:0.144:2	0/1:84,46:31:130:0.354:2	0/1:137,24:32:161:0.149:2	0/1:73,56:31:129:0.434:2	0/1:85,43:32:128:0.336:2
chr1	16890649	rs373123987	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:31:130:0.046:2	./.
chr1	16890671	rs2419526	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,79:32:138:0.572:2	0/1:50,59:32:109:0.541:2	0/1:8,16:32:24:0.667:2	0/1:65,56:31:121:0.463:2	0/1:83,39:30:122:0.320:2	0/1:66,69:32:135:0.511:2	0/1:42,37:31:79:0.468:2	0/1:39,78:31:117:0.667:2	0/1:74,74:31:148:0.500:2	0/1:50,57:31:107:0.533:2	0/1:1,129:32:130:0.992:2
chr1	16890672	rs2419525	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,78:30:137:0.569:2	0/1:50,59:30:109:0.541:2	0/1:8,16:30:24:0.667:2	0/1:65,56:30:121:0.463:2	0/1:84,39:29:123:0.317:2	0/1:66,69:30:135:0.511:2	0/1:42,37:30:79:0.468:2	0/1:40,76:30:117:0.655:2	0/1:73,73:30:147:0.500:2	0/1:53,55:30:108:0.509:2	0/1:2,126:30:129:0.984:2
chr1	16890681	rs200760413	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,11:34:143:0.077:2	./.	./.
chr1	16893689	rs201227350	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,16:29:190:0.085:2	./.	./.	./.	0/1:173,7:31:180:0.039:2	./.	./.
chr1	16893691	rs4098127	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,16:31:193:0.083:2	./.	./.	./.	0/1:174,7:29:181:0.039:2	./.	./.
chr1	16893701	rs3927566	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	0/1:190,8:32:198:0.040:2	./.	./.	./.	./.	./.
chr1	16893716	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,22:29:196:0.112:2	./.	./.	./.	0/1:171,20:31:191:0.105:2	./.	./.
chr1	16893721	rs201533998	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:171,22:32:193:0.114:2	0/1:174,20:32:194:0.103:2	./.	0/1:183,14:33:197:0.071:2	0/1:184,10:32:194:0.052:2	./.	0/1:190,8:33:198:0.040:2	0/1:189,6:32:195:0.031:2	./.	0/1:172,19:31:191:0.099:2	0/1:178,14:33:192:0.073:2
chr1	16893736	rs4111893	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	0/1:183,9:32:193:0.047:2	./.	./.	./.
chr1	16893739	rs199583758	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,28:32:189:0.148:2	./.	./.
chr1	16893742	rs4111894	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16893752	rs11488476	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:159,34:32:195:0.176:2	./.	./.	./.	0/1:152,36:35:188:0.191:2	./.	./.
chr1	16893784	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,10:32:200:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr1	16893813	rs58611269	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2
chr1	16893837	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,19:30:200:0.095:2	./.	./.
chr1	16893841	rs77284342	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,5:32:187:0.027:2	0/1:155,9:32:164:0.055:2	./.	0/1:116,5:32:121:0.041:2	0/1:103,14:32:117:0.120:2	./.	0/1:124,14:32:138:0.101:2	0/1:177,12:31:189:0.063:2	./.	0/1:147,24:31:171:0.140:2	./.
chr1	16895586	rs78194517	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,35:31:195:0.179:2	./.
chr1	16895622	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	0/1:183,5:31:188:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16895623	rs373437793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,16:31:200:0.080:2	./.	./.
chr1	16895625	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,18:29:186:0.097:2	./.
chr1	16895634	rs75027498	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,180:33:190:0.947:2	0/1:9,161:32:170:0.947:2	0/1:7,55:32:62:0.887:2	0/1:57,134:32:191:0.702:2	0/1:52,128:32:180:0.711:2	0/1:110,81:32:191:0.424:2	0/1:9,183:32:192:0.953:2	0/1:58,132:32:190:0.695:2	0/1:7,183:33:190:0.963:2	0/1:15,175:32:190:0.921:2	0/1:48,145:32:193:0.751:2
chr1	16895695	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,8:33:123:0.065:2	0/1:97,6:33:103:0.058:2	./.	0/1:100,4:34:104:0.038:2	0/1:88,6:32:94:0.064:2	0/1:116,14:31:130:0.108:2	0/1:78,6:33:84:0.071:2	0/1:103,10:32:113:0.088:2	0/1:126,8:34:134:0.060:2	0/1:123,4:32:127:0.031:2	0/1:111,9:34:120:0.075:2
chr1	16907303	rs201805881	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:184,14:30:198:0.071:2	0/1:184,12:31:196:0.061:2	0/1:182,16:30:198:0.081:2	0/1:174,22:31:197:0.112:2	0/1:192,4:33:196:0.020:2	./.	0/1:163,26:31:189:0.138:2	./.	./.
chr1	16907307	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,8:32:194:0.041:2	./.
chr1	16907328	rs78540200	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,143:33:195:0.733:2	0/1:38,156:33:194:0.804:2	0/1:44,152:32:196:0.776:2	0/1:50,146:33:196:0.745:2	0/1:30,163:33:193:0.845:2	0/1:103,95:32:198:0.480:2	0/1:40,152:33:192:0.792:2	0/1:47,151:33:198:0.763:2	0/1:60,136:34:196:0.694:2	0/1:64,131:33:195:0.672:2	0/1:32,155:33:187:0.829:2
chr1	16909052	rs140548913	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,129:32:184:0.701:2	0/1:48,95:32:143:0.664:2	0/1:23,19:31:43:0.452:2	0/1:116,76:31:192:0.396:2	0/1:106,92:31:198:0.465:2	0/1:89,102:31:192:0.534:2	0/1:78,116:31:194:0.598:2	0/1:60,117:31:177:0.661:2	0/1:22,166:32:188:0.883:2	0/1:72,120:31:192:0.625:2	0/1:45,137:31:182:0.753:2
chr1	16909100	rs143269469	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,35:33:180:0.194:2	0/1:135,48:33:183:0.262:2	0/1:67,17:31:84:0.202:2	0/1:177,15:33:192:0.078:2	0/1:182,13:34:196:0.067:2	0/1:159,33:33:192:0.172:2	0/1:161,35:33:196:0.179:2	0/1:130,59:32:189:0.312:2	0/1:179,10:33:189:0.053:2	0/1:145,45:33:190:0.237:2	0/1:141,44:34:186:0.238:2
chr1	16909121	.	G	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:184,5:30:189:0.026:2	0/1:185,7:30:192:0.036:2	./.	0/1:186,9:30:195:0.046:2	./.	0/1:190,5:32:195:0.026:2	0/1:190,6:30:196:0.031:2	./.	0/1:184,5:32:189:0.026:2	0/1:184,5:31:189:0.026:2	0/1:180,6:31:186:0.032:2
chr1	16909129	rs199798572	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,98:32:190:0.516:2	0/1:94,89:32:183:0.486:2	0/1:46,44:32:90:0.489:2	0/1:125,68:31:193:0.352:2	0/1:112,77:32:189:0.407:2	0/1:122,68:32:190:0.358:2	0/1:89,103:32:192:0.536:2	0/1:113,74:32:187:0.396:2	0/1:109,80:33:189:0.423:2	0/1:96,91:31:187:0.487:2	0/1:82,104:32:186:0.559:2
chr1	16909133	rs375545829	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:184,4:33:188:0.021:2	0/1:189,4:32:193:0.021:2	./.	./.	0/1:182,14:32:196:0.071:2	./.	./.	./.	./.	./.	./.
chr1	16909134	rs201581469	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:189,4:33:193:0.021:2	./.	0/1:185,8:32:193:0.041:2	./.	./.	./.	./.	0/1:183,7:33:190:0.037:2	0/1:183,6:32:189:0.032:2	./.
chr1	16909161	rs199600066	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,31:32:191:0.162:2	0/1:174,17:31:191:0.089:2	0/1:79,7:32:86:0.081:2	0/1:175,15:33:190:0.079:2	0/1:184,10:29:194:0.052:2	./.	0/1:166,32:33:198:0.162:2	0/1:187,7:33:194:0.036:2	0/1:169,18:31:187:0.096:2	0/1:158,29:32:187:0.155:2	0/1:169,19:31:188:0.101:2
chr1	16909191	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,18:34:172:0.105:2
chr1	16909192	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,15:32:189:0.079:2	./.	./.
chr1	16909208	rs200714079	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:149,22:31:171:0.129:2	0/1:125,18:32:143:0.126:2	0/1:51,3:34:54:0.056:2	./.	0/1:118,7:31:125:0.056:2	./.	0/1:137,13:32:150:0.087:2	0/1:178,8:31:186:0.043:2	0/1:185,6:34:191:0.031:2	0/1:139,19:32:158:0.120:2	0/1:159,15:32:174:0.086:2
chr1	16909212	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,6:31:158:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr1	16909216	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,5:31:158:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	16909220	rs201826071	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:124,47:32:171:0.275:2	0/1:90,38:32:128:0.297:2	./.	0/1:117,40:32:157:0.255:2	0/1:78,28:31:106:0.264:2	0/1:108,38:31:146:0.260:2	0/1:102,44:32:146:0.301:2	0/1:146,28:31:174:0.161:2	0/1:118,72:33:190:0.379:2	0/1:115,38:32:153:0.248:2	0/1:135,37:32:172:0.215:2
chr1	16909222	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,8:31:156:0.051:2	./.	./.	./.	./.	./.	0/1:147,9:33:156:0.058:2	./.
chr1	16909246	rs373061760	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,5:31:25:0.200:2	./.	./.	0/1:97,7:33:104:0.067:2	./.	./.	./.	./.	./.
chr1	16913560	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:195:0.026:2	./.	./.	./.	./.
chr1	16913579	rs183653891	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,48:30:195:0.247:2	./.	./.
chr1	16913584	rs629538	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:157,38:30:195:0.195:2	0/1:154,37:29:191:0.194:2	0/1:141,22:30:163:0.135:2	./.	./.	./.	0/1:171,22:30:193:0.114:2	0/1:141,46:30:187:0.246:2	0/1:182,11:29:193:0.057:2	0/1:27,152:30:179:0.849:2	./.
chr1	16913612	rs629889	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:158,38:32:196:0.194:2	0/1:152,39:31:191:0.204:2	0/1:157,22:31:179:0.123:2	./.	./.	./.	0/1:172,24:32:197:0.122:2	0/1:139,53:31:192:0.276:2	0/1:182,10:33:192:0.052:2	0/1:9,170:31:180:0.950:2	./.
chr1	16913620	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:27:196:0.031:2	./.	./.	./.	0/1:189,5:28:194:0.026:2
chr1	16913633	rs75826632	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,63:32:195:0.323:2	0/1:146,51:32:197:0.259:2	0/1:122,41:31:163:0.252:2	0/1:126,73:32:199:0.367:2	0/1:103,85:32:189:0.452:2	0/1:170,22:31:192:0.115:2	0/1:120,74:32:194:0.381:2	0/1:185,5:30:190:0.026:2	0/1:61,132:34:193:0.684:2	./.	0/1:185,6:32:191:0.031:2
chr1	16913677	rs200743207	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,42:27:146:0.288:2	0/1:92,35:27:127:0.276:2	0/1:26,28:27:54:0.519:2	0/1:148,34:26:184:0.187:2	0/1:134,48:27:182:0.264:2	0/1:151,49:26:200:0.245:2	0/1:105,28:27:133:0.211:2	0/1:118,15:24:133:0.113:2	0/1:166,33:28:199:0.166:2	0/1:5,74:26:79:0.937:2	./.
chr1	16914250	rs202115379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:81,13:30:94:0.138:2	0/1:164,30:29:195:0.155:2	./.	./.	./.	./.	./.	./.	./.
chr1	16914252	rs1020241	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,41:32:190:0.216:2	0/1:116,27:33:143:0.189:2	0/1:59,32:32:91:0.352:2	0/1:164,33:32:197:0.168:2	0/1:172,25:32:197:0.127:2	./.	0/1:139,57:31:196:0.291:2	0/1:130,62:32:192:0.323:2	./.	0/1:95,97:32:192:0.505:2	0/1:67,124:32:191:0.649:2
chr1	16914275	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,36:30:197:0.183:2	./.	./.
chr1	16914306	rs1967910	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,43:32:165:0.261:2	0/1:124,38:31:162:0.235:2	0/1:24,14:31:38:0.368:2	0/1:148,29:32:177:0.164:2	0/1:105,33:32:138:0.239:2	./.	0/1:78,36:31:114:0.316:2	0/1:108,44:32:152:0.289:2	./.	0/1:68,86:32:154:0.558:2	0/1:46,103:32:150:0.691:2
chr1	16915357	rs199859875	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,96:31:176:0.545:2	0/1:51,68:31:119:0.571:2	0/1:16,31:31:47:0.660:2	0/1:131,57:31:188:0.303:2	0/1:113,78:31:191:0.408:2	0/1:82,107:31:189:0.566:2	0/1:82,109:31:191:0.571:2	0/1:83,103:31:186:0.554:2	0/1:27,149:32:176:0.847:2	0/1:94,99:31:193:0.513:2	0/1:47,133:31:180:0.739:2
chr1	16915405	rs201355992	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,35:33:182:0.192:2	0/1:141,50:32:191:0.262:2	0/1:50,21:34:71:0.296:2	0/1:167,15:33:182:0.082:2	0/1:177,17:34:194:0.088:2	0/1:174,23:33:197:0.117:2	0/1:160,34:32:194:0.175:2	0/1:143,49:33:192:0.255:2	0/1:175,15:35:190:0.079:2	0/1:149,41:32:190:0.216:2	0/1:124,60:33:184:0.326:2
chr1	16915426	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:183,5:31:188:0.027:2	0/1:183,9:32:193:0.047:2	./.	0/1:180,6:31:186:0.032:2	./.	0/1:189,7:29:196:0.036:2	./.	./.	./.	0/1:184,8:29:192:0.042:2	0/1:176,10:32:186:0.054:2
chr1	16915434	rs202129231	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,83:32:179:0.464:2	0/1:89,103:32:192:0.536:2	0/1:31,36:32:67:0.537:2	0/1:99,84:32:183:0.459:2	0/1:113,82:31:195:0.421:2	0/1:131,61:32:193:0.318:2	0/1:87,104:32:191:0.545:2	0/1:112,82:33:194:0.423:2	0/1:104,84:33:188:0.447:2	0/1:92,95:32:187:0.508:2	0/1:90,93:32:183:0.508:2
chr1	16915438	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,12:32:185:0.065:2	0/1:188,7:31:195:0.036:2	0/1:192,5:32:197:0.025:2	0/1:191,6:29:197:0.030:2	./.	0/1:176,14:34:190:0.074:2	./.	./.
chr1	16915439	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:180,7:33:187:0.037:2	0/1:184,6:32:190:0.032:2	./.	0/1:171,14:30:185:0.076:2	./.	./.	./.	./.	0/1:183,7:35:190:0.037:2	./.	./.
chr1	16915466	rs200264463	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,23:33:192:0.120:2	0/1:175,19:32:194:0.098:2	0/1:85,8:33:93:0.086:2	0/1:162,24:32:186:0.129:2	0/1:188,9:32:197:0.046:2	./.	0/1:174,23:32:197:0.117:2	0/1:186,11:33:197:0.056:2	0/1:173,19:33:192:0.099:2	0/1:152,36:32:188:0.191:2	0/1:170,19:33:189:0.101:2
chr1	16915496	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,12:32:194:0.062:2
chr1	16915497	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,13:31:186:0.070:2	./.	./.
chr1	16915513	rs368775000	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:159,21:32:180:0.117:2	0/1:129,9:32:138:0.065:2	0/1:52,6:32:59:0.103:2	./.	0/1:128,8:33:136:0.059:2	./.	0/1:159,5:31:164:0.030:2	0/1:167,15:32:182:0.082:2	0/1:182,10:31:192:0.052:2	0/1:136,24:33:160:0.150:2	0/1:180,11:32:191:0.058:2
chr1	16915517	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,8:32:181:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr1	16915521	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:51,3:33:54:0.056:2	0/1:166,12:29:178:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr1	16915525	rs201237274	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,40:32:166:0.241:2	0/1:99,34:32:133:0.256:2	0/1:43,6:31:49:0.122:2	0/1:123,51:31:174:0.293:2	0/1:91,35:31:126:0.278:2	0/1:123,37:32:160:0.231:2	0/1:107,46:32:153:0.301:2	0/1:154,26:33:180:0.144:2	0/1:126,61:32:187:0.326:2	0/1:116,24:32:140:0.171:2	0/1:141,30:32:171:0.175:2
chr1	16915527	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:32:140:0.036:2	./.
chr1	16915551	rs202151903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,5:32:117:0.043:2	./.	./.	./.	./.	./.
chr1	16918351	rs200182673	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,9:32:99:0.091:2
chr1	16918397	rs201111313	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:33:27:0.148:2	./.	./.	./.	./.	./.	./.
chr1	16918424	rs9730077	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,18:33:89:0.202:2	0/1:63,9:33:72:0.125:2	./.	0/1:86,11:32:97:0.113:2	./.	./.	0/1:37,11:33:48:0.229:2	0/1:55,5:32:60:0.083:2	0/1:104,7:34:111:0.063:2	0/1:106,5:34:111:0.045:2	0/1:103,20:33:123:0.163:2
chr1	16918465	rs3897296	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,5:34:66:0.077:2	./.	./.	./.	./.	0/1:67,11:32:78:0.141:2	./.	0/1:73,5:34:78:0.064:2	0/1:88,6:33:94:0.064:2	0/1:80,8:32:88:0.091:2	0/1:109,7:34:116:0.060:2
chr1	16918473	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:31:75:0.080:2	./.	./.	0/1:92,4:32:96:0.042:2	0/1:77,6:32:83:0.072:2	0/1:118,5:30:123:0.041:2
chr1	16918498	rs11583018	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:31:21:0.238:2	./.	./.	0/1:59,6:28:65:0.092:2	./.	./.	./.	./.	./.
chr1	16918502	rs3925698	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,36:30:58:0.621:2	0/1:14,27:28:41:0.659:2	0/1:5,15:29:20:0.750:2	0/1:22,48:30:70:0.686:2	0/1:26,37:30:64:0.587:2	0/1:34,28:29:62:0.452:2	0/1:27,37:30:64:0.578:2	0/1:46,39:30:85:0.459:2	0/1:8,74:30:83:0.902:2	0/1:27,39:30:66:0.591:2	0/1:36,78:29:114:0.684:2
chr1	17248500	rs6683035	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,61:28:89:0.685:2	0/1:26,33:28:59:0.559:2	0/1:4,3:30:7:0.429:2	0/1:76,45:28:121:0.372:2	0/1:80,29:29:109:0.266:2	0/1:108,65:28:174:0.376:2	0/1:42,40:28:82:0.488:2	0/1:66,89:28:155:0.574:2	0/1:68,59:29:127:0.465:2	0/1:1,59:28:60:0.983:2	0/1:38,41:28:79:0.519:2
chr1	17248532	rs6586566	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,174:32:174:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,78:33:78:1.00:2
chr1	17250836	rs57174186	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,8:29:47:0.170:2	0/1:22,5:27:27:0.185:2	./.	0/1:23,18:29:41:0.439:2	0/1:36,12:28:48:0.250:2	0/1:38,11:29:49:0.224:2	0/1:22,17:29:39:0.436:2	./.	0/1:22,18:32:41:0.450:2	./.	./.
chr1	17256454	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:31:27:0.222:2	./.	./.	./.
chr1	17256455	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,6:30:25:0.240:2	./.	./.	./.
chr1	17256477	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.
chr1	17263290	rs57442576	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:33:15:0.400:2	0/1:35,18:32:53:0.340:2	./.	./.	./.	./.	./.	./.	0/1:9,18:32:27:0.667:2
chr1	17264920	rs4463721	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,27:30:136:0.199:2	0/1:49,24:31:73:0.329:2	0/1:16,9:29:25:0.360:2	0/1:117,40:30:157:0.255:2	0/1:122,59:31:182:0.326:2	0/1:87,91:30:178:0.511:2	0/1:137,50:31:187:0.267:2	0/1:127,49:31:176:0.278:2	0/1:79,87:30:167:0.524:2	./.	./.
chr1	17264939	rs4558023	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,32:29:125:0.256:2	0/1:48,21:28:69:0.304:2	0/1:12,9:29:22:0.429:2	0/1:108,32:29:140:0.229:2	0/1:117,55:29:172:0.320:2	0/1:96,84:29:181:0.467:2	0/1:109,50:30:159:0.314:2	0/1:119,45:29:164:0.274:2	0/1:69,95:30:164:0.579:2	./.	./.
chr1	17265560	rs9435793	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.
chr1	17266536	rs9435714	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.
chr1	17270628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.	./.	./.
chr1	17270751	rs12025984	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr1	17272077	rs140598698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,22:30:79:0.278:2	./.	./.	./.	./.	./.	./.
chr1	17273396	rs7537468	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,7:31:20:0.350:2	0/1:8,8:32:16:0.500:2	./.	0/1:30,6:34:36:0.167:2	0/1:10,3:33:13:0.231:2	0/1:34,11:34:45:0.244:2	./.	./.	0/1:13,5:28:18:0.278:2	./.	./.
chr1	17273444	rs7545185	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,3:31:13:0.231:2	./.	./.	0/1:10,7:30:17:0.412:2	0/1:2,7:29:9:0.778:2	0/1:16,9:30:25:0.360:2	0/1:5,4:32:9:0.444:2	./.	0/1:9,13:28:22:0.591:2	./.	./.
chr1	17275337	rs143866013	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:85,17:31:102:0.167:2	0/1:69,9:32:78:0.115:2	0/1:11,5:30:16:0.313:2	./.	0/1:110,33:31:143:0.231:2	./.	0/1:82,23:30:105:0.219:2	0/1:104,26:29:130:0.200:2	./.	0/1:59,18:31:78:0.234:2	0/1:51,34:30:85:0.400:2
chr1	17275382	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,17:29:87:0.198:2	./.	./.
chr1	17277457	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:189:0.021:2	./.	./.
chr1	17277485	rs3895543	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:29:110:0.036:2
chr1	17277573	rs3969856	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.
chr1	17280821	rs6669627	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,11:30:118:0.093:2	./.	0/1:108,10:32:118:0.085:2	./.	0/1:101,6:31:107:0.056:2	./.	./.	0/1:86,10:33:96:0.104:2
chr1	17282573	rs2273114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,42:32:80:0.525:2	./.	./.	./.	./.	./.	./.
chr1	17295679	rs4920574	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:31:84:1.00:2	0/1:0,63:32:63:1.00:2	0/1:7,3:32:10:0.300:2	0/1:58,36:31:94:0.383:2	0/1:0,68:31:68:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,63:31:63:1.00:2	0/1:1,82:32:83:0.988:2	0/1:46,26:32:72:0.361:2
chr1	17296882	rs41303881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr1	17297132	rs145138931	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,37:31:96:0.385:2	./.	./.
chr1	17301448	rs2235933	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,10:28:38:0.270:2	0/1:16,17:33:33:0.515:2	0/1:2,3:29:5:0.600:2	./.	./.	./.	0/1:43,29:32:72:0.403:2	./.	0/1:30,31:32:61:0.508:2	0/1:0,56:32:56:1.00:2	./.
chr1	17301780	rs761422	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,59:29:122:0.484:2	0/1:45,28:29:73:0.384:2	./.	0/1:85,72:29:157:0.459:2	0/1:96,75:29:172:0.439:2	./.	0/1:101,91:29:192:0.474:2	0/1:117,76:29:193:0.394:2	0/1:93,62:30:155:0.400:2	./.	0/1:65,55:29:120:0.458:2
chr1	17303361	rs143978513	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:33:48:0.583:2	./.	./.	0/1:21,23:32:44:0.523:2
chr1	17312743	rs3170740	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:31:26:0.423:2	0/1:7,12:31:19:0.632:2	./.	0/1:9,8:31:17:0.471:2	0/1:5,17:30:22:0.773:2	0/1:0,25:31:25:1.00:2	0/1:0,9:31:10:1.00:2	0/1:5,11:31:16:0.688:2	0/1:11,12:32:23:0.522:2	./.	0/1:7,6:31:13:0.462:2
chr1	17313343	rs9435659	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,23:30:47:0.489:2	0/1:13,25:31:38:0.658:2	./.	0/1:51,55:31:106:0.519:2	0/1:44,51:29:95:0.537:2	0/1:0,97:31:97:1.00:2	0/1:0,111:31:111:1.00:2	0/1:36,54:32:90:0.600:2	0/1:41,43:31:84:0.512:2	./.	0/1:35,31:31:67:0.470:2
chr1	17313654	rs761421	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,13:30:22:0.591:2	0/1:5,11:32:16:0.688:2	./.	0/1:9,14:29:23:0.609:2	0/1:11,12:29:23:0.522:2	0/1:1,25:29:26:0.962:2	0/1:1,22:29:23:0.957:2	0/1:9,8:28:17:0.471:2	0/1:16,8:31:24:0.333:2	./.	0/1:7,5:31:12:0.417:2
chr1	17314702	rs3738815	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,39:32:83:0.470:2	0/1:26,24:31:50:0.480:2	0/1:5,10:32:15:0.667:2	./.	0/1:71,57:31:128:0.445:2	./.	./.	./.	0/1:54,54:31:109:0.500:2	0/1:0,65:32:65:1.00:2	./.
chr1	17314942	rs9435662	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,37:31:85:0.435:2	0/1:30,15:31:45:0.333:2	./.	0/1:68,53:31:121:0.438:2	0/1:82,69:30:152:0.457:2	0/1:1,119:30:120:0.992:2	0/1:1,125:30:126:0.992:2	0/1:67,66:31:133:0.496:2	0/1:44,48:31:92:0.522:2	./.	0/1:53,49:31:102:0.480:2
chr1	17319011	rs2076603	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,64:32:123:0.520:2	0/1:32,26:32:58:0.448:2	./.	0/1:60,65:31:125:0.520:2	0/1:75,95:31:170:0.559:2	0/1:0,126:32:126:1.00:2	0/1:9,182:31:191:0.953:2	0/1:106,89:32:195:0.456:2	0/1:55,58:32:113:0.513:2	./.	0/1:74,66:30:140:0.471:2
chr1	17330849	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2
chr1	17380497	rs2746462	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,51:29:53:0.962:2	0/1:0,43:29:44:1.00:2	0/1:1,8:30:9:0.889:2	0/1:65,40:29:105:0.381:2	0/1:0,52:28:52:1.00:2	0/1:3,82:28:85:0.965:2	0/1:0,35:28:35:1.00:2	0/1:38,37:29:75:0.493:2	0/1:2,63:29:65:0.969:2	0/1:2,59:29:61:0.967:2	0/1:15,26:29:41:0.634:2
chr1	17396592	rs11581590	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:30:102:0.471:2	./.	./.	./.	./.	./.
chr1	17396703	rs2076595	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,21:33:52:0.404:2	0/1:10,13:32:23:0.565:2	./.	0/1:59,60:32:119:0.504:2	0/1:84,73:33:157:0.465:2	0/1:0,107:32:107:1.00:2	0/1:1,123:33:124:0.992:2	0/1:65,58:32:123:0.472:2	0/1:62,41:32:103:0.398:2	0/1:39,48:33:87:0.552:2	0/1:40,33:33:73:0.452:2
chr1	17402255	rs3818032	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,24:31:56:0.429:2	0/1:24,11:31:35:0.314:2	./.	0/1:44,42:31:86:0.488:2	0/1:54,55:30:110:0.505:2	0/1:0,112:31:112:1.00:2	0/1:2,111:31:113:0.982:2	0/1:40,82:31:124:0.672:2	0/1:53,52:32:105:0.495:2	0/1:36,43:32:79:0.544:2	0/1:49,45:30:95:0.479:2
chr1	17405809	rs2057096	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,16:30:31:0.533:2	0/1:15,6:31:21:0.286:2	./.	0/1:17,25:31:42:0.595:2	0/1:20,17:29:37:0.459:2	0/1:1,36:31:37:0.973:2	0/1:0,28:31:28:1.00:2	0/1:29,25:31:54:0.463:2	0/1:31,18:32:49:0.367:2	0/1:21,17:30:38:0.447:2	0/1:17,23:33:40:0.575:2
chr1	17405814	rs148233687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	./.
chr1	17411165	rs187500985	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	./.	./.	./.	./.	./.	./.
chr1	17413121	rs2076615	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	0/1:31,15:32:46:0.326:2	./.	./.	./.	./.	0/1:10,22:32:32:0.688:2	./.
chr1	17419024	rs11203297	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,14:29:26:0.538:2	./.	./.	0/1:30,24:30:54:0.444:2	./.	0/1:20,12:30:32:0.375:2	./.
chr1	17531726	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	17550121	rs2293912	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,29:32:85:0.341:2	./.	./.	./.	0/1:48,61:32:109:0.560:2	0/1:0,80:33:80:1.00:2	./.	./.
chr1	17555508	rs2977234	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:1,17:32:18:0.944:2	./.	0/1:25,17:33:42:0.405:2	0/1:27,8:33:35:0.229:2	0/1:30,18:32:48:0.375:2	./.	0/1:0,45:32:45:1.00:2	./.	0/1:0,14:32:14:1.00:2	0/1:0,19:32:19:1.00:2
chr1	17557133	rs3003406	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:7,9:30:16:0.563:2	0/1:0,20:29:20:1.00:2	./.	0/1:19,13:30:32:0.406:2	./.	./.	0/1:0,21:29:21:1.00:2
chr1	17575645	rs3763589	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,60:30:113:0.531:2	./.	./.	./.
chr1	17586134	rs3750300	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,73:29:174:0.420:2	./.	./.	./.
chr1	17593316	rs2272629	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,61:31:133:0.459:2	./.	./.	./.
chr1	17597655	rs2293916	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,46:28:119:0.387:2	./.	./.	./.	./.	0/1:1,104:30:105:0.990:2
chr1	17601165	rs11585357	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:29:11:1.00:2	./.	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	./.
chr1	17609448	rs2293920	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:1,47:32:48:0.979:2	./.	0/1:0,132:32:132:1.00:2	./.	0/1:1,137:32:138:0.993:2	0/1:91,76:32:167:0.455:2	./.	0/1:70,59:33:129:0.457:2	0/1:65,42:32:107:0.393:2	0/1:3,85:32:88:0.966:2
chr1	17657534	rs11203366	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,5:32:5:1.00:2	0/1:35,46:31:81:0.568:2	./.	0/1:0,78:32:78:1.00:2	./.	0/1:0,61:32:61:1.00:2	0/1:25,28:33:53:0.528:2	0/1:0,40:32:40:1.00:2	0/1:0,55:32:55:1.00:2
chr1	17657616	rs11203367	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,12:31:12:1.00:2	0/1:65,52:29:117:0.444:2	./.	0/1:1,132:30:133:0.992:2	./.	0/1:2,132:30:134:0.985:2	0/1:43,78:29:121:0.645:2	0/1:2,63:30:65:0.969:2	0/1:0,97:29:97:1.00:2
chr1	17660499	rs874881	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,14:30:14:1.00:2	0/1:33,41:30:74:0.554:2	./.	0/1:0,72:29:72:1.00:2	./.	0/1:0,72:29:72:1.00:2	0/1:42,33:30:75:0.440:2	0/1:0,51:29:51:1.00:2	0/1:0,70:28:70:1.00:2
chr1	17660890	rs12737739	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,22:31:22:1.00:2	./.	0/1:18,16:31:34:0.471:2	./.	0/1:1,29:31:30:0.967:2	./.	0/1:0,11:30:11:1.00:2	0/1:18,19:32:37:0.514:2	0/1:8,11:30:19:0.579:2	0/1:0,39:30:39:1.00:2
chr1	17662639	rs2240340	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,5:32:5:1.00:2	0/1:24,25:33:49:0.510:2	./.	0/1:0,35:33:35:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:33,13:33:46:0.283:2	0/1:0,35:32:35:1.00:2	0/1:1,29:33:30:0.967:2
chr1	17662662	rs1748033	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,8:33:8:1.00:2	0/1:37,29:33:66:0.439:2	./.	0/1:0,51:32:51:1.00:2	./.	0/1:0,59:32:59:1.00:2	0/1:48,22:34:70:0.314:2	0/1:0,46:32:46:1.00:2	0/1:0,55:32:55:1.00:2
chr1	17668563	rs35903413	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,39:31:58:0.672:2	./.
chr1	17674537	rs2240335	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:20,28:32:48:0.583:2	./.	0/1:1,38:31:39:0.974:2	./.	0/1:0,36:31:36:1.00:2	0/1:30,19:32:49:0.388:2	0/1:22,18:33:40:0.450:2	0/1:0,22:31:22:1.00:2
chr1	17681144	rs35240185	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:29:21:0.381:2	0/1:22,23:29:45:0.511:2
chr1	17690106	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,62:29:141:0.440:2
chr1	17707601	rs6669650	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:30:116:0.474:2
chr1	17708528	rs61766772	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,94:33:94:1.00:2	0/1:44,42:33:86:0.488:2	./.	./.
chr1	17720545	rs12073549	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,69:32:165:0.418:2	0/1:115,62:32:177:0.350:2	./.	./.	./.	./.
chr1	17739585	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.	./.	./.	./.	./.
chr1	17739586	rs942457	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,87:31:87:1.00:2	0/1:0,58:32:58:1.00:2	0/1:6,8:32:14:0.571:2	./.	./.	0/1:49,38:30:87:0.437:2	0/1:55,58:31:113:0.513:2	./.	0/1:43,56:32:99:0.566:2	./.	./.
chr1	17739597	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.
chr1	17739638	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.	./.
chr1	17747256	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.	./.	./.	./.
chr1	17907108	rs35812446	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:29:86:0.453:2
chr1	17934347	rs145133878	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.	./.
chr1	17949562	rs55693639	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,72:31:187:0.387:2	./.	./.	0/1:57,33:30:90:0.367:2
chr1	17961345	rs34725104	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,43:30:79:0.544:2	0/1:19,14:32:33:0.424:2	./.	./.	0/1:47,37:29:84:0.440:2	./.	./.	0/1:70,61:30:131:0.466:2	./.	0/1:42,38:30:80:0.475:2	0/1:31,34:30:65:0.523:2
chr1	17981184	rs35255680	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,65:28:65:1.00:2	./.	0/1:38,41:30:79:0.519:2	0/1:42,39:28:81:0.481:2	./.	0/1:32,26:28:58:0.448:2
chr1	17982545	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.	./.	./.
chr1	17982559	rs867984	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,57:31:59:0.966:2	./.	0/1:37,16:30:53:0.302:2	0/1:26,28:33:54:0.519:2	./.	0/1:17,25:33:42:0.595:2
chr1	17982572	rs374154488	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,19:30:47:0.404:2	./.	./.	./.	./.	./.	./.
chr1	17991052	rs6695710	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:28:34:1.00:2	0/1:0,18:28:18:1.00:2	./.	0/1:0,34:28:34:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,18:29:18:1.00:2
chr1	18014131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,6:31:103:0.058:2	./.	./.	./.	./.	./.
chr1	18023365	rs2270978	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:32:130:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,169:31:169:1.00:2	0/1:0,148:31:148:1.00:2	./.	0/1:0,164:32:164:1.00:2	0/1:90,85:32:175:0.486:2	0/1:91,77:32:168:0.458:2	0/1:0,125:32:125:1.00:2	0/1:75,84:32:159:0.528:2
chr1	18023509	rs2270977	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:0,22:31:22:1.00:2	0/1:25,19:32:44:0.432:2	0/1:31,12:32:43:0.279:2	0/1:0,28:32:28:1.00:2	0/1:26,13:32:39:0.333:2
chr1	18023606	rs375266292	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.
chr1	18023690	rs2270976	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:29:4:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,8:29:8:1.00:2	0/1:0,9:28:9:1.00:2	./.	./.	0/1:3,8:28:11:0.727:2	0/1:3,4:31:7:0.571:2	./.	0/1:0,3:27:3:1.00:2
chr1	18149510	rs694214	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,13:31:25:0.520:2	0/1:13,12:31:25:0.480:2	./.	0/1:22,17:30:39:0.436:2	./.	./.	./.	0/1:23,43:31:66:0.652:2	0/1:28,22:31:50:0.440:2	0/1:15,17:32:32:0.531:2	./.
chr1	18149566	rs2296035	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,20:30:43:0.465:2	0/1:15,18:31:33:0.545:2	0/1:6,4:32:10:0.400:2	0/1:26,36:31:62:0.581:2	./.	./.	0/1:28,35:30:63:0.556:2	0/1:30,50:30:80:0.625:2	0/1:0,62:31:62:1.00:2	0/1:18,27:32:45:0.600:2	./.
chr1	18152582	rs478698	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:6,5:31:11:0.455:2
chr1	18152939	rs16830789	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.	./.	./.	./.
chr1	18704829	rs72940712	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:28:27:0.556:2	./.	./.	./.
chr1	18807536	rs7512414	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,16:30:23:0.696:2	0/1:88,96:31:184:0.522:2	./.	./.	0/1:110,77:31:187:0.412:2	./.	./.	./.	./.
chr1	18807620	rs34109355	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:29:17:0.588:2	0/1:75,60:29:135:0.444:2	./.	./.	0/1:83,77:29:160:0.481:2	./.	./.	./.	./.
chr1	18807755	rs34976233	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,47:32:86:0.553:2	./.	./.	0/1:43,50:31:93:0.538:2	./.	./.	./.	./.
chr1	18807781	rs35013594	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,47:30:86:0.547:2	./.	./.	0/1:53,59:30:112:0.527:2	./.	./.	./.	./.
chr1	18807897	rs2992755	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,31:30:46:0.674:2	0/1:18,9:28:27:0.333:2	0/1:0,2:31:2:1.00:2	0/1:43,31:30:74:0.419:2	0/1:0,62:30:62:1.00:2	0/1:0,78:30:78:1.00:2	0/1:48,46:30:94:0.489:2	./.	0/1:0,74:31:74:1.00:2	0/1:33,31:31:64:0.484:2	0/1:0,59:29:59:1.00:2
chr1	18807938	rs2992754	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,15:28:29:0.517:2	./.	./.	./.	0/1:18,15:28:34:0.455:2	./.	0/1:20,15:27:35:0.429:2
chr1	18807953	rs11261022	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,11:33:24:0.458:2	0/1:13,3:33:16:0.188:2	0/1:0,2:32:2:1.00:2	./.	0/1:12,8:32:20:0.400:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:15,14:32:29:0.483:2	0/1:16,11:33:27:0.407:2	0/1:14,15:32:29:0.517:2
chr1	18808056	rs7515150	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:33:5:0.800:2	0/1:14,17:33:31:0.548:2	./.	./.	0/1:28,17:32:45:0.378:2	./.	./.	./.	./.
chr1	18808069	rs7528572	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:5:1.00:2	0/1:14,15:33:29:0.517:2	./.	./.	0/1:32,18:32:50:0.360:2	./.	./.	./.	./.
chr1	18808292	rs2992753	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,17:31:45:0.378:2	0/1:18,9:31:27:0.333:2	0/1:0,6:31:6:1.00:2	0/1:44,26:32:70:0.371:2	0/1:1,36:31:37:0.973:2	0/1:2,52:31:54:0.963:2	0/1:32,21:31:53:0.396:2	./.	0/1:0,54:32:54:1.00:2	0/1:28,14:30:42:0.333:2	0/1:0,44:31:44:1.00:2
chr1	18808465	rs3007718	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,10:30:22:0.455:2	0/1:7,3:32:10:0.300:2	0/1:0,2:32:2:1.00:2	0/1:15,11:29:26:0.423:2	0/1:0,30:29:30:1.00:2	0/1:0,25:30:25:1.00:2	0/1:10,5:29:15:0.333:2	./.	0/1:0,20:32:20:1.00:2	0/1:7,4:28:11:0.364:2	0/1:0,18:29:18:1.00:2
chr1	18808526	rs2992752	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:34:9:1.00:2	0/1:14,15:32:30:0.517:2	0/1:0,26:32:26:1.00:2	0/1:0,17:34:17:1.00:2	./.	./.	0/1:0,17:33:17:1.00:2	0/1:10,3:28:13:0.231:2	0/1:0,5:33:5:1.00:2
chr1	18808711	rs2992751	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	0/1:5,6:32:11:0.545:2
chr1	18809896	rs2992745	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,15:31:43:0.349:2	./.	0/1:0,5:31:5:1.00:2	0/1:18,26:31:44:0.591:2	0/1:0,19:29:19:1.00:2	0/1:0,24:31:24:1.00:2	0/1:8,18:30:26:0.692:2	./.	0/1:0,19:32:19:1.00:2	0/1:19,7:31:26:0.269:2	0/1:1,26:31:27:0.963:2
chr1	18809916	rs12061708	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,15:29:46:0.326:2	0/1:13,5:31:18:0.278:2	./.	./.	0/1:14,11:32:25:0.440:2	0/1:0,34:31:34:1.00:2	./.	./.	0/1:15,16:32:31:0.516:2	0/1:18,7:32:25:0.280:2	0/1:22,13:32:35:0.371:2
chr1	18810344	rs2992740	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,11:28:25:0.440:2	0/1:6,9:30:15:0.600:2	./.	./.	0/1:0,13:27:13:1.00:2	0/1:2,20:29:22:0.909:2	0/1:9,4:29:13:0.308:2	./.	0/1:0,28:31:28:1.00:2	./.	0/1:0,14:30:14:1.00:2
chr1	18810349	rs6667069	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr1	18810484	rs1889861	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,16:30:49:0.327:2	./.	./.	./.	0/1:45,31:33:76:0.408:2	./.	0/1:40,45:31:85:0.529:2
chr1	18810486	rs1889862	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,16:31:49:0.327:2	./.	./.	./.	0/1:46,31:33:77:0.403:2	./.	0/1:40,45:31:85:0.529:2
chr1	18810722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.
chr1	18811121	rs35259167	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:18,21:31:39:0.538:2	./.	./.	0/1:16,7:27:23:0.304:2	./.	./.	./.	./.
chr1	18811305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.	./.
chr1	18811668	rs3007719	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,16:32:30:0.533:2	0/1:9,4:32:13:0.308:2	0/1:0,8:34:8:1.00:2	0/1:19,14:32:33:0.424:2	0/1:0,41:31:41:1.00:2	0/1:0,34:33:34:1.00:2	0/1:9,21:32:30:0.700:2	./.	0/1:0,34:32:34:1.00:2	0/1:20,16:31:36:0.444:2	0/1:0,36:32:36:1.00:2
chr1	18811854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr1	18812176	rs872355	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,40:32:74:0.541:2	0/1:23,15:32:38:0.395:2	0/1:5,7:31:12:0.583:2	./.	0/1:29,18:31:47:0.383:2	0/1:2,67:30:69:0.971:2	./.	./.	0/1:38,35:33:73:0.479:2	0/1:24,18:32:42:0.429:2	0/1:48,34:33:82:0.415:2
chr1	18812285	rs77256928	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,47:32:132:0.356:2	./.	./.
chr1	18812316	rs708088	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,29:32:60:0.483:2	0/1:27,29:33:56:0.518:2	0/1:0,9:32:9:1.00:2	0/1:56,47:32:103:0.456:2	0/1:35,37:32:72:0.514:2	0/1:0,94:32:94:1.00:2	0/1:46,25:32:71:0.352:2	./.	0/1:64,35:33:99:0.354:2	0/1:36,37:33:73:0.507:2	0/1:59,42:32:101:0.416:2
chr1	19018270	rs141048856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,52:31:89:0.584:2	./.	./.	./.	./.	./.	./.
chr1	19018405	rs2076020	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:31:46:0.565:2	0/1:7,10:33:17:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	19018432	rs2076019	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:29:35:0.486:2	0/1:9,5:28:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	19027239	rs2743201	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,21:27:57:0.382:2	0/1:23,14:27:37:0.378:2	./.	./.	0/1:46,35:27:81:0.432:2	./.	0/1:31,16:26:48:0.340:2	./.	./.	./.	./.
chr1	19166243	rs12075191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,183:32:183:1.00:2	./.	./.
chr1	19166294	rs12033832	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,83:33:193:0.430:2	0/1:61,53:32:114:0.465:2	./.	0/1:94,80:33:174:0.460:2	0/1:95,94:32:189:0.497:2	./.	0/1:193,5:34:198:0.025:2	./.	./.	0/1:2,180:32:182:0.989:2	0/1:2,181:33:183:0.989:2
chr1	19166893	rs6662276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,97:30:99:1.00:2	./.	./.
chr1	19166925	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.	./.
chr1	19175846	rs28374389	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,55:30:55:1.00:2	./.	./.	./.	./.
chr1	19181015	rs34447754	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:31:35:1.00:2	0/1:0,32:31:32:1.00:2	0/1:28,23:32:51:0.451:2	./.	0/1:24,18:32:42:0.429:2	./.	0/1:10,22:31:32:0.688:2	./.
chr1	19181082	rs28470550	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,67:31:68:0.985:2	0/1:2,81:30:83:0.976:2	0/1:36,59:30:95:0.621:2	./.	0/1:45,38:29:83:0.458:2	./.	0/1:23,29:30:52:0.558:2	./.
chr1	19181393	rs35874116	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,45:30:45:1.00:2	0/1:3,68:31:71:0.958:2	0/1:33,28:31:61:0.459:2	./.	0/1:37,33:31:70:0.471:2	./.	0/1:33,27:31:60:0.450:2	./.
chr1	19184077	rs68081213	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,89:31:90:0.989:2	0/1:2,89:31:91:0.978:2	0/1:63,39:30:102:0.382:2	./.	0/1:73,62:31:135:0.459:2	./.	0/1:44,27:31:71:0.380:2	./.
chr1	19186129	rs9701796	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:2,47:32:49:0.959:2	0/1:0,12:31:12:1.00:2	0/1:0,89:33:89:1.00:2	0/1:1,71:32:72:0.986:2	0/1:54,35:33:89:0.393:2	0/1:46,45:32:91:0.495:2	./.	0/1:49,41:33:90:0.456:2	0/1:29,47:32:76:0.618:2	0/1:1,90:33:91:0.989:2
chr1	19199448	rs61757683	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:32:19:0.526:2
chr1	19200988	rs61749348	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.
chr1	19201919	rs6695033	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,51:30:127:0.405:2	./.	./.
chr1	19201928	rs2230709	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,69:31:174:0.397:2	0/1:93,94:31:187:0.503:2	0/1:53,64:32:117:0.547:2	./.	./.
chr1	19201956	rs2230708	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:29:71:1.00:2	0/1:0,38:30:38:1.00:2	0/1:8,7:28:15:0.467:2	0/1:0,126:30:127:1.00:2	0/1:0,134:29:134:1.00:2	0/1:68,52:30:120:0.433:2	0/1:143,4:31:147:0.027:2	0/1:92,68:30:160:0.425:2	0/1:60,46:31:106:0.434:2	0/1:0,64:30:64:1.00:2	0/1:0,112:29:112:1.00:2
chr1	19202896	rs2230707	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:31:42:1.00:2	0/1:2,29:30:31:0.935:2	0/1:29,14:30:43:0.326:2	./.	0/1:38,27:31:65:0.415:2	./.	0/1:17,15:31:32:0.469:2	./.
chr1	19202917	rs7550938	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:27:20:1.00:2	0/1:0,16:27:16:1.00:2	./.	0/1:0,30:26:30:1.00:2	0/1:1,23:24:24:0.958:2	0/1:26,11:26:37:0.297:2	./.	0/1:29,22:27:51:0.431:2	./.	0/1:0,24:26:24:1.00:2	0/1:1,28:26:29:0.966:2
chr1	19202926	rs2230706	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:26:17:1.00:2	0/1:0,15:28:15:1.00:2	./.	0/1:0,25:26:25:1.00:2	0/1:1,17:21:18:0.944:2	0/1:20,13:27:33:0.394:2	./.	0/1:29,15:26:44:0.341:2	./.	0/1:0,19:25:19:1.00:2	0/1:0,23:25:24:1.00:2
chr1	19203961	rs41310410	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:32:20:0.250:2
chr1	19203997	rs2230705	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:33:47:1.00:2	0/1:0,30:33:30:1.00:2	0/1:29,14:32:43:0.326:2	0/1:3,9:31:12:0.750:2	0/1:0,22:32:22:1.00:2	0/1:0,29:34:29:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,22:32:22:1.00:2
chr1	19235085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:35:177:0.023:2	./.	./.
chr1	19246266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2
chr1	19401405	rs2281748	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,42:32:43:0.977:2	0/1:0,24:32:24:1.00:2	./.	./.	0/1:0,37:32:37:1.00:2	0/1:34,22:32:56:0.393:2	0/1:28,20:31:48:0.417:2	0/1:44,28:32:72:0.389:2	0/1:26,28:33:54:0.519:2	0/1:24,23:33:47:0.489:2	0/1:23,16:32:39:0.410:2
chr1	19411129	rs1043905	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,169:30:169:1.00:2	0/1:3,82:29:85:0.965:2	0/1:0,28:29:28:1.00:2	0/1:1,182:30:183:0.995:2	0/1:0,185:29:185:1.00:2	0/1:99,91:29:190:0.479:2	0/1:120,75:29:195:0.385:2	0/1:0,189:29:189:1.00:2	0/1:96,101:30:197:0.513:2	0/1:89,65:29:154:0.422:2	0/1:0,187:28:187:1.00:2
chr1	19413261	rs12584	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,169:30:174:0.971:2	0/1:0,115:31:115:1.00:2	0/1:0,26:30:26:1.00:2	0/1:1,157:30:158:0.994:2	0/1:2,176:30:178:0.989:2	0/1:74,100:30:175:0.575:2	0/1:95,81:30:176:0.460:2	0/1:1,188:30:189:0.995:2	0/1:86,78:31:164:0.476:2	0/1:99,82:30:181:0.453:2	0/1:1,159:30:162:0.994:2
chr1	19415304	rs1043899	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,116:30:116:1.00:2	0/1:3,121:30:124:0.976:2	0/1:79,47:31:126:0.373:2	0/1:82,54:31:136:0.397:2	0/1:1,170:31:171:0.994:2	0/1:62,71:31:133:0.534:2	0/1:58,49:31:107:0.458:2	0/1:0,117:30:117:1.00:2
chr1	19420560	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.
chr1	19433449	rs6426677	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,128:31:132:0.970:2	0/1:0,63:30:63:1.00:2	0/1:0,11:30:11:1.00:2	0/1:1,148:30:150:0.993:2	0/1:0,136:30:136:1.00:2	0/1:70,68:30:138:0.493:2	0/1:56,61:31:117:0.521:2	0/1:2,117:30:120:0.983:2	0/1:75,59:32:134:0.440:2	0/1:77,61:29:138:0.442:2	0/1:2,119:31:121:0.983:2
chr1	19440305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.
chr1	19447752	rs78347051	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,26:24:133:0.195:2	./.	0/1:15,5:18:20:0.250:2	0/1:95,32:18:127:0.252:2	0/1:95,35:19:130:0.269:2	0/1:99,28:20:127:0.220:2	0/1:95,48:17:143:0.336:2	0/1:97,37:18:134:0.276:2	0/1:117,21:23:138:0.152:2	0/1:103,36:19:139:0.259:2	0/1:86,35:23:121:0.289:2
chr1	19447819	rs35802543	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,55:29:150:0.367:2	./.	0/1:68,72:29:140:0.514:2	./.	./.	./.
chr1	19447843	rs1044010	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:32:171:1.00:2	0/1:1,102:32:103:0.990:2	0/1:0,24:32:24:1.00:2	0/1:1,184:33:185:0.995:2	0/1:1,180:32:182:0.994:2	0/1:109,85:33:194:0.438:2	0/1:103,90:33:193:0.466:2	0/1:0,190:33:190:1.00:2	0/1:90,82:33:172:0.477:2	0/1:88,101:33:189:0.534:2	0/1:0,175:33:175:1.00:2
chr1	19454741	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,61:33:102:0.598:2	./.
chr1	19468201	rs145780544	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,44:33:97:0.458:2	./.	./.
chr1	19477222	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2	./.	./.	./.	./.
chr1	19487572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.
chr1	19490822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,93:31:191:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr1	19499560	rs16862578	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:0,57:32:57:1.00:2	./.	./.	./.	0/1:31,28:32:59:0.475:2	./.	./.	0/1:46,38:33:84:0.452:2
chr1	19499954	rs952790	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,37:31:73:0.507:2	./.	0/1:26,28:30:54:0.519:2	./.	./.	./.
chr1	19510394	rs3762396	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,81:33:82:0.988:2	0/1:0,47:32:47:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,144:33:144:1.00:2	0/1:2,87:32:90:0.978:2	0/1:51,44:32:95:0.463:2	0/1:51,48:33:99:0.485:2	0/1:0,114:33:114:1.00:2	0/1:63,53:34:116:0.457:2	0/1:40,40:33:80:0.500:2	0/1:0,128:33:128:1.00:2
chr1	19565338	rs709682	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:30:38:0.342:2	./.	0/1:26,12:32:38:0.316:2	./.	./.	./.
chr1	19565344	rs709683	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,24:33:37:0.649:2	0/1:13,7:31:20:0.350:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:23,13:32:36:0.361:2	0/1:12,21:32:33:0.636:2	0/1:24,14:34:38:0.368:2	0/1:22,8:34:30:0.267:2	0/1:10,10:33:21:0.500:2	0/1:27,17:33:44:0.386:2
chr1	19566858	rs141614470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,97:32:185:0.524:2	./.	./.	./.	./.
chr1	19566881	rs12084825	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:31:13:0.462:2	0/1:1,106:32:107:0.991:2	./.	./.	./.	0/1:89,71:32:160:0.444:2	./.	./.	0/1:62,37:31:99:0.374:2
chr1	19570426	rs2294944	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:33:86:0.465:2	./.	0/1:55,38:33:94:0.409:2	./.	./.	./.
chr1	19583636	rs1126682	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,31:31:83:0.373:2	0/1:34,35:31:69:0.507:2	./.	./.	./.	0/1:61,42:30:103:0.408:2	./.	./.	0/1:51,40:32:91:0.440:2	./.	./.
chr1	19584004	rs1042380	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,40:32:40:1.00:2	./.	0/1:18,18:32:36:0.500:2	./.	0/1:0,47:32:47:1.00:2	./.	./.	./.
chr1	19585207	rs2294939	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,49:32:118:0.415:2	./.	0/1:64,32:32:96:0.333:2	./.	./.	./.
chr1	19585239	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:81:0.050:2	./.
chr1	19585246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.
chr1	19593826	rs2982534	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	19595135	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	19595137	rs2235795	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,62:32:62:1.00:2	0/1:0,33:32:33:1.00:2	0/1:6,3:31:9:0.333:2	./.	0/1:1,78:30:79:0.987:2	0/1:35,53:31:88:0.602:2	0/1:16,25:31:41:0.610:2	./.	0/1:2,67:31:69:0.971:2	0/1:1,65:32:66:0.985:2	0/1:20,21:31:41:0.512:2
chr1	19595194	rs75616155	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:1,62:32:63:0.984:2	./.	./.	./.	0/1:35,25:32:61:0.417:2	./.	./.	./.
chr1	19596091	rs146198474	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,8:32:191:0.042:2	./.	./.	./.
chr1	19596124	rs2235794	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,120:29:121:1.00:2	0/1:5,67:30:72:0.931:2	0/1:4,10:30:14:0.714:2	./.	0/1:1,146:28:147:0.993:2	0/1:61,80:28:141:0.567:2	0/1:90,64:28:155:0.416:2	./.	0/1:5,155:29:160:0.969:2	0/1:0,173:28:174:1.00:2	0/1:96,74:30:170:0.435:2
chr1	19596156	rs6665756	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,93:32:93:1.00:2	0/1:1,54:32:55:0.982:2	0/1:5,8:31:13:0.615:2	./.	0/1:1,84:30:85:0.988:2	0/1:43,51:30:94:0.543:2	0/1:60,47:31:107:0.439:2	./.	0/1:0,110:31:110:1.00:2	0/1:0,116:31:116:1.00:2	0/1:70,54:31:124:0.435:2
chr1	19600386	rs112053480	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,17:30:35:0.486:2	0/1:0,185:30:185:1.00:2	./.	./.	./.	0/1:92,93:31:185:0.503:2	./.	./.	./.
chr1	19600406	rs149246656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,39:31:98:0.398:2
chr1	19609254	rs1738025	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:32:168:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,30:32:30:1.00:2	0/1:1,165:33:167:0.994:2	0/1:2,175:32:177:0.989:2	0/1:84,102:32:186:0.548:2	0/1:89,82:33:171:0.480:2	0/1:81,88:32:169:0.521:2	0/1:0,171:33:171:1.00:2	0/1:0,162:32:162:1.00:2	0/1:72,82:32:154:0.532:2
chr1	19611227	rs1065658	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,37:33:65:0.569:2	0/1:9,19:32:28:0.679:2	./.	./.	./.	0/1:42,44:33:86:0.512:2	./.	./.	./.	0/1:49,39:32:88:0.443:2	./.
chr1	19611241	rs1738023	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,62:33:62:1.00:2	0/1:1,59:33:60:0.983:2	0/1:38,45:33:83:0.542:2	0/1:27,21:32:48:0.438:2	0/1:39,32:32:71:0.451:2	0/1:0,73:33:73:1.00:2	0/1:1,87:33:88:0.989:2	0/1:49,36:32:85:0.424:2
chr1	19612477	rs2231198	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,35:32:81:0.432:2	0/1:34,14:32:48:0.292:2	./.	./.	0/1:0,92:31:92:1.00:2	./.	0/1:59,47:31:106:0.443:2	./.	0/1:44,39:32:83:0.470:2	0/1:48,46:32:94:0.489:2	0/1:58,40:31:98:0.408:2
chr1	19630782	rs148319333	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,51:30:132:0.386:2	./.	./.	./.	./.	./.
chr1	19633544	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	./.	./.
chr1	19634679	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,5:29:146:0.035:2	./.	./.	./.	./.	./.
chr1	19635011	rs1043657	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:30:7:0.714:2	0/1:0,65:30:65:1.00:2	./.	./.	./.	0/1:39,46:30:85:0.541:2	./.	./.	./.
chr1	19652063	rs11558390	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,35:30:60:0.583:2	./.	./.	./.	./.	0/1:35,31:32:66:0.470:2	0/1:32,48:31:80:0.600:2	./.
chr1	19652874	rs41264079	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:31:21:0.619:2	0/1:3,10:31:13:0.769:2	./.	./.	./.	./.	./.	./.
chr1	19775375	rs79308175	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:32:162:0.031:2	./.	./.	./.
chr1	19950062	rs1737428	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,15:30:33:0.455:2	0/1:13,10:30:23:0.435:2	./.	0/1:15,29:29:44:0.659:2	0/1:0,27:28:27:1.00:2	./.	./.	0/1:15,14:29:29:0.483:2	0/1:29,14:29:43:0.326:2	./.	0/1:32,16:29:48:0.333:2
chr1	19992444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.	./.
chr1	19992513	rs1805054	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,28:31:38:0.737:2	0/1:16,23:31:39:0.590:2	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.
chr1	20009737	rs10917514	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,89:33:162:0.553:2	0/1:84,63:32:147:0.429:2	./.	./.	./.	./.	./.	./.
chr1	20020993	rs4370779	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:30:81:1.00:2	0/1:2,44:29:46:0.957:2	0/1:0,17:27:17:1.00:2	0/1:1,116:30:117:0.991:2	0/1:0,153:30:153:1.00:2	./.	0/1:0,148:30:148:1.00:2	0/1:101,46:30:147:0.313:2	0/1:1,93:30:94:0.989:2	0/1:66,39:29:106:0.371:2	0/1:42,31:29:73:0.425:2
chr1	20020994	rs4515815	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:31:82:1.00:2	0/1:2,44:31:46:0.957:2	0/1:0,17:29:17:1.00:2	0/1:65,50:31:115:0.435:2	0/1:81,74:31:155:0.477:2	./.	0/1:1,147:31:148:0.993:2	0/1:103,45:32:148:0.304:2	0/1:44,50:31:94:0.532:2	0/1:67,40:31:107:0.374:2	0/1:41,31:31:72:0.431:2
chr1	20066380	rs41303893	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,34:28:61:0.557:2	./.	0/1:39,21:27:60:0.350:2
chr1	20072082	rs35760408	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,36:32:88:0.409:2	./.	0/1:34,37:31:71:0.521:2
chr1	20073019	rs34281331	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,95:33:183:0.519:2	./.	0/1:79,101:32:180:0.561:2
chr1	20097822	rs11551819	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:31:42:0.548:2	0/1:26,9:32:35:0.257:2	./.	./.	./.	./.
chr1	20097941	rs10917536	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,10:29:24:0.417:2	0/1:10,7:31:17:0.412:2	./.	0/1:19,18:31:37:0.486:2	./.	0/1:0,28:29:28:1.00:2	0/1:21,15:31:36:0.417:2	./.	0/1:18,9:31:27:0.333:2	0/1:11,17:29:28:0.607:2	0/1:0,27:31:27:1.00:2
chr1	20141017	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.
chr1	20141245	rs148594830	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:31:91:0.396:2	./.	./.	./.
chr1	20141283	rs1541184	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	./.	./.	./.	./.	./.
chr1	20141405	rs41264113	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:31:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	20141528	rs1541185	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,96:30:195:0.492:2	0/1:94,93:30:187:0.497:2	./.	./.	./.	./.
chr1	20141615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.
chr1	20141707	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	20246876	rs61729970	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,21:31:51:0.412:2	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.	./.	./.	0/1:34,43:32:77:0.558:2	./.	./.
chr1	20304926	rs4744	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:11,9:27:20:0.450:2	0/1:5,14:30:19:0.737:2	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:28,24:30:52:0.462:2	./.	./.	./.	./.
chr1	20411332	rs2020887	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,56:30:123:0.455:2	0/1:39,32:29:71:0.451:2	0/1:6,6:30:12:0.500:2	0/1:66,64:29:130:0.492:2	0/1:77,47:30:124:0.379:2	0/1:53,44:30:97:0.454:2	./.	0/1:71,68:30:140:0.489:2	0/1:112,65:29:179:0.367:2	0/1:57,62:30:119:0.521:2	./.
chr1	20442054	rs584367	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:28:10:1.00:2	./.	0/1:79,36:29:115:0.313:2	0/1:64,48:29:112:0.429:2	0/1:0,101:29:101:1.00:2	0/1:1,126:29:127:0.992:2	0/1:74,50:29:124:0.403:2	./.	0/1:52,50:27:102:0.490:2
chr1	20490518	rs6426616	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:28:10:1.00:2	0/1:0,62:30:62:1.00:2	0/1:44,48:29:92:0.522:2	0/1:53,32:30:85:0.376:2	./.	0/1:64,45:30:109:0.413:2	./.	0/1:39,32:29:71:0.451:2	0/1:55,45:29:100:0.450:2
chr1	20501582	rs12139100	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,59:29:152:0.388:2	./.	./.	0/1:115,72:30:187:0.385:2	./.	./.	./.
chr1	20518226	rs3179690	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,36:33:60:0.600:2	0/1:21,27:33:48:0.563:2	0/1:6,10:32:16:0.625:2	0/1:30,22:33:52:0.423:2	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	./.	./.
chr1	20519430	rs148069798	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:157:0.026:2	./.	./.	./.
chr1	20519497	rs41264519	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,37:30:77:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr1	20519808	rs1061588	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:33:49:0.367:2	./.	0/1:36,39:32:75:0.520:2
chr1	20520538	rs139448008	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,38:28:95:0.400:2	./.	./.	./.	./.
chr1	20520732	rs7542020	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:31:101:0.505:2	./.	0/1:45,56:30:101:0.554:2
chr1	20640906	rs61741263	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:46,13:31:59:0.220:2	0/1:19,18:32:37:0.486:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,45:31:82:0.549:2	./.
chr1	20656824	rs2072752	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	0/1:20,22:32:42:0.524:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2	0/1:50,37:32:87:0.425:2
chr1	20662938	rs10916769	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:33:97:0.454:2	0/1:25,20:32:45:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:32:76:0.487:2	0/1:51,33:32:85:0.393:2
chr1	20671961	rs11582960	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,109:31:110:0.991:2	0/1:1,77:32:78:0.987:2	./.	./.	0/1:104,77:31:181:0.425:2	0/1:80,61:31:141:0.433:2	0/1:115,82:32:197:0.416:2	0/1:102,91:32:193:0.472:2	0/1:91,88:32:179:0.492:2	0/1:68,69:32:138:0.504:2	0/1:0,155:32:155:1.00:2
chr1	20671993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,12:16:185:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr1	20678551	rs230182	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,45:33:100:0.450:2	./.	0/1:38,34:32:72:0.472:2
chr1	20680305	rs190647773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,38:30:81:0.469:2	./.	./.	./.	./.	./.	./.
chr1	20680718	rs2072751	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,83:32:84:0.988:2	0/1:0,50:32:50:1.00:2	./.	./.	0/1:76,96:32:172:0.558:2	0/1:80,56:31:136:0.412:2	0/1:83,86:32:169:0.509:2	0/1:89,71:32:160:0.444:2	./.	0/1:52,50:31:102:0.490:2	0/1:64,74:32:138:0.536:2
chr1	20827216	rs595980	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,20:31:62:0.323:2	0/1:31,26:31:57:0.456:2	0/1:35,34:31:69:0.493:2	0/1:35,32:31:67:0.478:2	./.	0/1:26,32:29:58:0.552:2	./.
chr1	20827258	rs148112540	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,51:31:127:0.402:2	./.	./.	./.
chr1	20880905	rs74058407	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.
chr1	20881309	rs3795509	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,74:31:142:0.521:2	./.	./.	./.
chr1	20915701	rs2072671	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,39:32:85:0.459:2	0/1:30,22:33:52:0.423:2	./.	./.	0/1:56,56:32:112:0.500:2	./.	0/1:91,51:33:142:0.359:2	0/1:5,123:33:128:0.961:2	./.	0/1:0,104:32:104:1.00:2	0/1:37,40:34:77:0.519:2
chr1	20945055	rs1048977	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,37:32:55:0.673:2	0/1:12,12:32:24:0.500:2	./.	0/1:26,30:31:56:0.536:2	0/1:0,72:31:72:1.00:2	./.	./.	./.	0/1:0,61:32:61:1.00:2	0/1:31,22:32:53:0.415:2	0/1:0,57:32:57:1.00:2
chr1	20960385	rs148871409	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:29:16:0.438:2	0/1:8,3:33:11:0.273:2
chr1	20977000	rs1043424	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:32:11:0.818:2	0/1:33,41:32:74:0.554:2	0/1:26,21:31:47:0.447:2	./.	./.	0/1:76,4:33:80:0.050:2	0/1:0,79:33:79:1.00:2	./.	0/1:40,34:33:74:0.459:2
chr1	20982631	rs4704	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,48:31:103:0.466:2	0/1:36,27:32:63:0.429:2	0/1:7,12:31:19:0.632:2	0/1:0,134:30:134:1.00:2	0/1:116,74:31:190:0.389:2	./.	0/1:1,189:31:190:0.995:2	0/1:2,170:31:172:0.988:2	0/1:0,113:31:113:1.00:2	0/1:73,55:31:128:0.430:2	0/1:72,53:31:125:0.424:2
chr1	20987873	rs537816	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,9:33:9:1.00:2
chr1	20992819	rs631357	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,45:32:103:0.437:2	0/1:26,24:32:50:0.480:2	0/1:0,29:32:29:1.00:2	0/1:0,154:32:154:1.00:2	0/1:83,56:30:139:0.403:2	0/1:1,158:32:159:0.994:2	0/1:0,156:32:156:1.00:2	0/1:0,143:31:143:1.00:2	0/1:1,162:32:163:0.994:2	0/1:62,42:31:105:0.404:2	0/1:59,63:31:122:0.516:2
chr1	21011346	rs12028811	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:29:38:0.395:2
chr1	21012563	rs72650870	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:33:38:0.579:2	0/1:17,12:31:29:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	21024901	rs522496	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,15:31:45:0.333:2	0/1:9,17:32:26:0.654:2	0/1:1,4:32:5:0.800:2	0/1:0,51:32:51:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,81:31:81:1.00:2	0/1:64,48:32:112:0.429:2	0/1:1,64:31:65:0.985:2	0/1:31,33:32:64:0.516:2	0/1:0,38:32:38:1.00:2	0/1:13,15:33:28:0.536:2
chr1	21031042	rs2296225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,105:30:196:0.536:2	./.	./.	./.	./.
chr1	21031046	rs2296226	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,100:31:182:0.549:2	./.	./.	./.	./.	./.	./.	0/1:85,93:31:178:0.522:2
chr1	21036265	rs33996125	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,77:29:181:0.425:2	./.	./.	./.	./.	./.	./.
chr1	21042094	rs12046928	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,32:32:63:0.508:2	./.	./.	0/1:39,53:32:92:0.576:2	./.	./.	./.	0/1:10,27:33:37:0.730:2
chr1	21044052	rs149468609	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	21044161	rs601329	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.
chr1	21050177	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.
chr1	21050958	rs592060	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,24:30:52:0.462:2	0/1:10,16:32:26:0.615:2	./.	0/1:0,77:30:78:1.00:2	0/1:42,33:30:75:0.440:2	0/1:0,79:30:79:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,61:31:61:1.00:2	0/1:33,17:33:51:0.340:2	0/1:0,44:30:44:1.00:2	0/1:0,41:30:44:1.00:2
chr1	21052462	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.
chr1	21143941	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.	./.
chr1	21167404	rs2230573	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,88:32:89:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,121:32:122:1.00:2
chr1	21177758	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.
chr1	21212726	rs201127143	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,14:16:150:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	21268346	rs35731992	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,31:30:87:0.356:2	./.	./.
chr1	21563258	rs140735120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:28:146:0.041:2
chr1	21563335	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.	./.	./.	./.	./.
chr1	21571529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.
chr1	21573722	rs2229450	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,35:31:88:0.398:2	0/1:41,19:31:60:0.317:2	./.	./.	./.	0/1:1,93:32:94:0.989:2	./.	0/1:61,67:32:128:0.523:2	./.	0/1:46,41:31:87:0.471:2	0/1:84,48:31:132:0.364:2
chr1	21573855	rs1076669	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,56:31:123:0.455:2	0/1:52,55:31:107:0.514:2	./.	./.	./.	./.	./.	0/1:45,56:31:101:0.554:2
chr1	21771701	rs79181421	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,5:31:98:0.051:2	./.	./.	./.
chr1	21795288	rs61740199	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:31:109:0.468:2	./.	./.	./.	./.
chr1	21795388	rs1827293	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:33:15:0.667:2	0/1:55,51:33:106:0.481:2	0/1:44,67:33:111:0.604:2	./.	0/1:77,53:34:130:0.408:2	0/1:55,58:33:113:0.513:2	0/1:52,83:34:135:0.615:2	0/1:0,135:33:135:1.00:2	0/1:88,64:33:152:0.421:2
chr1	21797204	rs72872292	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:31:89:0.483:2	./.	./.	./.	./.
chr1	21798095	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,15:33:124:0.121:2
chr1	21798124	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:29:70:0.057:2	./.	./.	./.	./.
chr1	21798144	rs142355608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:31:81:0.420:2	./.	./.	./.	./.
chr1	21798186	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.	./.	./.	./.
chr1	21798191	rs72872294	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.
chr1	21798197	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.	./.	./.
chr1	21798249	rs72872297	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	./.	./.	./.	./.
chr1	21799414	rs78430674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:31:56:0.411:2	./.	./.	./.	./.
chr1	21801413	rs200692184	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.	./.
chr1	21801438	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.
chr1	21801452	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.
chr1	21806571	rs41265989	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,54:32:59:0.915:2	./.	./.	./.	./.
chr1	21806606	rs201055589	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,6:32:123:0.049:2	./.	./.	./.
chr1	21806613	rs142126252	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,6:29:140:0.043:2	./.	./.	./.
chr1	21806619	rs375451944	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.
chr1	21806621	rs3820293	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,5:32:170:0.029:2	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.
chr1	21806624	rs3820292	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,5:30:175:0.029:2	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.
chr1	21806667	rs12043777	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:32:197:0.030:2	./.	0/1:2,4:34:6:0.667:2	./.
chr1	21806710	rs12034222	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:31:139:0.036:2	0/1:145,6:30:151:0.040:2	./.	./.	./.	./.	0/1:1,6:32:7:0.857:2	0/1:142,4:32:146:0.027:2
chr1	21808159	rs71512991	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,60:33:192:0.313:2	0/1:113,36:32:149:0.242:2	0/1:14,15:32:29:0.517:2	0/1:92,96:32:188:0.511:2	0/1:55,130:31:185:0.703:2	0/1:118,74:32:192:0.385:2	0/1:156,41:31:197:0.208:2	0/1:159,33:33:192:0.172:2	0/1:79,98:32:177:0.554:2	0/1:95,88:32:183:0.481:2	0/1:73,103:31:176:0.585:2
chr1	21808207	rs146564096	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,31:34:184:0.168:2	0/1:156,40:32:196:0.204:2	0/1:17,14:32:31:0.452:2	0/1:58,61:33:119:0.513:2	0/1:55,79:32:134:0.590:2	0/1:85,66:33:151:0.437:2	0/1:84,24:33:108:0.222:2	0/1:176,16:33:192:0.083:2	0/1:70,66:33:136:0.485:2	0/1:78,60:33:138:0.435:2	0/1:57,72:32:129:0.558:2
chr1	21808223	rs145079058	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,24:33:179:0.134:2	0/1:141,29:32:170:0.171:2	0/1:15,12:32:27:0.444:2	0/1:50,53:32:103:0.515:2	0/1:46,58:32:104:0.558:2	0/1:76,62:32:138:0.449:2	0/1:50,46:33:96:0.479:2	0/1:181,15:32:196:0.077:2	0/1:64,61:34:125:0.488:2	0/1:74,53:32:127:0.417:2	0/1:51,71:32:122:0.582:2
chr1	21808227	rs202219980	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,7:31:26:0.269:2	0/1:84,20:32:104:0.192:2	0/1:60,38:31:98:0.388:2	./.	./.	./.	0/1:100,22:32:122:0.180:2	./.	0/1:106,12:31:118:0.102:2
chr1	21808237	rs199711979	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:31:22:0.273:2	0/1:82,16:32:98:0.163:2	0/1:61,28:32:89:0.315:2	./.	./.	./.	0/1:94,22:32:116:0.190:2	./.	0/1:102,12:32:114:0.105:2
chr1	21808243	rs150691144	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:173,16:31:189:0.085:2	0/1:128,24:31:152:0.158:2	0/1:12,6:31:18:0.333:2	./.	./.	./.	0/1:66,13:31:79:0.165:2	0/1:167,29:31:196:0.148:2	./.	./.	./.
chr1	21809014	rs200063908	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,6:34:62:0.097:2	./.	0/1:3,5:32:8:0.625:2	0/1:48,9:33:57:0.158:2	0/1:40,28:32:68:0.412:2	0/1:53,37:32:90:0.411:2	0/1:52,28:31:80:0.350:2	0/1:108,11:31:119:0.092:2	0/1:51,27:33:78:0.346:2	0/1:38,39:32:77:0.506:2	0/1:52,23:33:75:0.307:2
chr1	21809050	rs200706981	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,11:32:41:0.268:2	0/1:20,7:32:27:0.259:2	./.	0/1:25,20:31:45:0.444:2	./.	0/1:24,22:30:46:0.478:2	0/1:25,17:33:42:0.405:2	0/1:46,23:32:69:0.333:2	0/1:31,12:33:43:0.279:2	0/1:23,23:31:46:0.500:2	0/1:36,22:31:58:0.379:2
chr1	21809051	rs201590042	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,29:32:40:0.725:2	0/1:7,20:31:27:0.741:2	0/1:0,4:31:4:1.00:2	0/1:36,7:32:43:0.163:2	0/1:19,14:30:33:0.424:2	0/1:22,22:31:44:0.500:2	0/1:17,21:31:38:0.553:2	0/1:34,33:31:67:0.493:2	0/1:26,12:31:38:0.316:2	0/1:24,22:31:46:0.478:2	0/1:37,18:31:55:0.327:2
chr1	21809667	rs139757131	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,61:32:108:0.570:2	./.	./.	./.	./.
chr1	21809750	rs202069483	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,13:32:197:0.066:2	0/1:172,20:32:192:0.104:2	0/1:0,4:32:4:1.00:2	0/1:3,49:32:52:0.942:2	0/1:5,27:30:33:0.844:2	0/1:1,37:32:38:0.974:2	0/1:9,37:32:48:0.804:2	./.	0/1:1,45:33:46:0.978:2	0/1:7,40:32:47:0.851:2	0/1:6,62:33:68:0.912:2
chr1	21809778	rs61739078	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,31:31:192:0.161:2	0/1:175,20:31:195:0.103:2	0/1:41,6:30:47:0.128:2	0/1:165,25:30:190:0.132:2	./.	0/1:112,82:30:194:0.423:2	0/1:169,27:30:196:0.138:2	0/1:154,40:31:194:0.206:2	0/1:166,26:30:192:0.135:2	0/1:111,82:30:193:0.425:2	0/1:167,17:30:184:0.092:2
chr1	21809850	rs199951062	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,60:33:190:0.316:2	0/1:146,50:32:196:0.255:2	0/1:71,22:32:93:0.237:2	0/1:151,37:33:188:0.197:2	./.	0/1:94,92:33:186:0.495:2	0/1:112,77:34:189:0.407:2	0/1:118,74:33:192:0.385:2	0/1:133,50:34:183:0.273:2	0/1:90,101:34:191:0.529:2	0/1:147,30:33:177:0.169:2
chr1	21809876	rs151217608	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:132,51:33:183:0.279:2	0/1:118,50:32:168:0.298:2	0/1:49,17:32:66:0.258:2	./.	./.	./.	0/1:145,39:33:184:0.212:2	0/1:156,39:33:195:0.200:2	./.	./.	./.
chr1	21889635	rs1780316	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:29:158:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,176:29:176:1.00:2	0/1:115,59:31:174:0.339:2	0/1:107,83:28:190:0.437:2	0/1:0,158:29:158:1.00:2	0/1:1,171:29:172:0.994:2	0/1:111,75:29:186:0.403:2	0/1:0,148:29:149:1.00:2	0/1:86,66:28:152:0.434:2
chr1	21889760	rs149344982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,48:30:91:0.527:2	./.	./.	./.	./.
chr1	21894735	rs3200254	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,27:31:62:0.435:2	0/1:24,22:32:46:0.478:2	./.	./.	./.	./.	./.	./.	0/1:53,47:33:100:0.470:2	./.	./.
chr1	21900171	rs3200255	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,9:31:44:0.205:2	0/1:28,11:28:39:0.282:2	./.	./.	./.	./.	./.	./.	0/1:27,26:29:53:0.491:2	./.	./.
chr1	21904131	rs34605986	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.
chr1	21932625	rs2275365	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,42:30:74:0.568:2	./.	./.	./.	./.
chr1	21935433	rs861212	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,46:31:93:0.495:2	0/1:31,27:31:58:0.466:2	0/1:8,6:30:14:0.429:2	./.	0/1:24,49:30:73:0.671:2	0/1:38,32:28:70:0.457:2	0/1:52,32:30:84:0.381:2	0/1:65,52:30:117:0.444:2	0/1:56,61:31:117:0.521:2	./.	0/1:58,64:31:122:0.525:2
chr1	21938268	rs200167247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:33:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	21940555	rs2275363	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,16:31:36:0.444:2	0/1:13,15:32:28:0.536:2	0/1:1,3:31:4:0.750:2	./.	0/1:34,29:31:63:0.460:2	0/1:52,40:31:92:0.435:2	./.	0/1:61,24:31:85:0.282:2	0/1:39,35:32:74:0.473:2	0/1:24,19:31:43:0.442:2	0/1:38,33:32:71:0.465:2
chr1	21943818	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,67:32:161:0.416:2	./.	./.	./.
chr1	21943820	rs2275360	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,39:31:106:0.368:2	./.	./.	0/1:3,143:31:146:0.979:2	./.	./.	./.	./.
chr1	21944418	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.	./.
chr1	21952884	rs1130564	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:30:55:0.400:2	0/1:33,12:31:45:0.267:2	./.
chr1	21976283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.
chr1	21977941	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,49:31:119:0.412:2	./.	./.
chr1	21978125	rs376124706	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	./.	./.
chr1	22050649	rs2275668	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:23,21:31:44:0.477:2	0/1:1,7:28:8:0.875:2	0/1:0,19:31:19:1.00:2	0/1:12,10:31:22:0.455:2	0/1:3,21:31:24:0.875:2	0/1:1,14:32:15:0.933:2	0/1:0,25:31:25:1.00:2	0/1:0,39:31:39:1.00:2
chr1	22109370	rs10917042	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,9:28:16:0.563:2	./.	./.	0/1:26,18:28:44:0.409:2	./.	./.	0/1:5,6:30:11:0.545:2
chr1	22141030	rs75506362	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:27:11:0.727:2	./.	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	./.	./.	./.
chr1	22141206	rs10917051	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,4:31:4:1.00:2	0/1:3,4:31:7:0.571:2	0/1:0,6:31:6:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,2:34:2:1.00:2	0/1:0,2:32:2:1.00:2
chr1	22142474	rs202212506	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:25:43:0.095:2
chr1	22149935	rs897467	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:26:12:0.500:2	0/1:0,2:28:2:1.00:2	0/1:1,4:31:5:0.800:2	0/1:7,8:30:15:0.533:2	0/1:2,8:27:10:0.800:2	0/1:0,9:30:9:1.00:2	0/1:0,10:29:10:1.00:2	0/1:11,8:28:19:0.421:2	0/1:3,4:25:7:0.571:2	0/1:0,2:33:2:1.00:2	./.
chr1	22150118	rs1138469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,26:31:70:0.371:2	./.
chr1	22150120	rs3736360	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:36,41:30:77:0.532:2	0/1:15,22:31:37:0.595:2	./.	./.	./.	./.	./.	0/1:47,57:30:104:0.548:2	./.	0/1:29,42:30:71:0.592:2	./.
chr1	22150160	rs3736358	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,36:32:69:0.522:2	0/1:17,20:32:37:0.541:2	./.	./.	./.	./.	./.	0/1:46,72:32:118:0.610:2	./.	0/1:39,34:32:73:0.466:2	./.
chr1	22154387	rs11552570	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,16:32:41:0.390:2	0/1:22,8:30:30:0.267:2	./.	./.	0/1:11,14:34:25:0.560:2	./.	./.
chr1	22154845	rs2228347	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,27:32:61:0.443:2	0/1:12,23:32:36:0.657:2	./.	./.	0/1:75,67:32:142:0.472:2	0/1:52,30:31:82:0.366:2	./.	0/1:55,69:32:124:0.556:2	0/1:55,39:34:94:0.415:2	0/1:0,75:32:75:1.00:2	./.
chr1	22157545	rs112494360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,49:32:93:0.527:2	0/1:38,36:32:74:0.486:2	./.	./.	0/1:21,31:33:52:0.596:2	./.	./.
chr1	22158157	rs2229488	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,69:28:154:0.448:2	0/1:92,68:29:160:0.425:2	./.	./.	0/1:110,75:29:185:0.405:2	./.	./.
chr1	22159008	rs2229487	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,44:31:73:0.603:2	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.	0/1:52,42:30:94:0.447:2	./.	0/1:30,20:29:50:0.400:2	./.
chr1	22159774	rs2229486	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,55:31:127:0.433:2	0/1:49,61:31:110:0.555:2	./.	./.	0/1:48,36:32:84:0.429:2	./.	./.
chr1	22160020	rs17459097	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,86:31:176:0.489:2	./.	./.	./.	./.
chr1	22160043	rs2229493	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,80:29:179:0.447:2	0/1:88,94:30:182:0.516:2	./.	./.	0/1:83,66:31:149:0.443:2	./.	./.
chr1	22161275	rs2229492	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:56,60:31:116:0.517:2	0/1:48,28:31:76:0.368:2	./.	./.	./.	./.	./.	0/1:119,71:30:190:0.374:2	./.	0/1:92,68:30:160:0.425:2	./.
chr1	22163390	rs35444472	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,16:30:40:0.400:2	0/1:31,18:30:49:0.367:2	./.	./.	0/1:34,24:32:58:0.414:2	./.	./.
chr1	22163402	rs41310390	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:33:20:0.300:2	./.
chr1	22165901	rs2291826	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,45:29:71:0.634:2	0/1:16,9:28:25:0.360:2	./.	./.	0/1:37,52:27:89:0.584:2	0/1:44,50:28:94:0.532:2	./.	0/1:40,60:28:100:0.600:2	0/1:32,26:28:58:0.448:2	0/1:23,39:27:62:0.629:2	./.
chr1	22165945	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	22165963	rs139500146	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,37:29:105:0.352:2	./.	./.	./.	./.	./.	./.	./.
chr1	22165987	rs2291827	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,54:30:95:0.568:2	0/1:29,20:31:49:0.408:2	./.	./.	./.	./.	./.	0/1:73,83:29:156:0.532:2	./.	0/1:57,60:30:117:0.513:2	./.
chr1	22167605	rs2228349	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,108:30:185:0.584:2	0/1:78,76:30:154:0.494:2	./.	./.	0/1:69,60:30:129:0.465:2	./.	./.
chr1	22168801	rs2229491	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,32:28:86:0.372:2	0/1:40,29:29:69:0.420:2	./.	./.	0/1:48,34:31:82:0.415:2	./.	./.
chr1	22168845	rs2229489	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,20:30:66:0.308:2	0/1:43,36:30:79:0.456:2	./.	./.	0/1:43,27:31:70:0.386:2	./.	./.
chr1	22170716	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	22174380	rs113578258	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:29:88:0.466:2	./.
chr1	22174426	rs2290501	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,57:29:101:0.564:2	0/1:18,22:31:40:0.550:2	./.	./.	0/1:102,78:31:180:0.433:2	0/1:107,82:30:189:0.434:2	./.	0/1:85,96:31:181:0.530:2	0/1:63,55:31:118:0.466:2	0/1:0,95:31:95:1.00:2	./.
chr1	22174518	rs12737091	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,42:28:122:0.344:2	0/1:71,52:29:123:0.423:2	./.	./.	0/1:50,31:29:81:0.383:2	./.	./.
chr1	22176617	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:29:97:0.041:2	./.	./.	./.
chr1	22178631	rs190391786	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	22178674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.
chr1	22179244	rs35669711	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,36:31:72:0.500:2	0/1:55,42:32:97:0.433:2	./.	./.	0/1:42,34:33:76:0.447:2	./.	./.
chr1	22179431	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:25:8:0.500:2	./.	./.	./.	./.
chr1	22179433	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	./.
chr1	22179436	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.
chr1	22179451	rs34443576	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2	0/1:5,12:30:17:0.706:2	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.
chr1	22179548	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	./.	./.	./.
chr1	22180723	rs12742444	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,23:27:63:0.365:2	0/1:28,26:28:55:0.481:2	./.	./.	0/1:27,34:29:62:0.557:2	./.	./.
chr1	22181360	rs116788687	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,56:32:122:0.459:2	./.	./.	./.	./.	./.	./.	0/1:34,25:32:59:0.424:2
chr1	22181895	rs2229475	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,61:30:126:0.484:2	0/1:80,66:31:146:0.452:2	./.	./.	0/1:51,62:32:113:0.549:2	./.	./.
chr1	22186113	rs199860743	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,10:13:56:0.179:2	./.	./.	./.	0/1:24,4:28:28:0.143:2
chr1	22190613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr1	22190679	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.
chr1	22190694	rs371145826	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,48:32:108:0.444:2	0/1:39,26:32:65:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	22191454	rs897471	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:29:2:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,8:30:8:1.00:2	0/1:0,6:30:6:1.00:2	0/1:5,10:30:15:0.667:2	0/1:0,5:30:5:1.00:2	0/1:2,4:31:6:0.667:2	0/1:3,4:26:7:0.571:2	./.	./.
chr1	22199245	rs2229482	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,47:30:85:0.553:2	0/1:28,24:31:52:0.462:2	0/1:0,18:29:18:1.00:2	0/1:67,86:29:153:0.562:2	./.	0/1:53,84:29:137:0.613:2	0/1:0,141:29:141:1.00:2	0/1:71,71:28:142:0.500:2	./.	0/1:54,61:29:115:0.530:2	0/1:32,45:29:77:0.584:2
chr1	22199882	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,5:22:27:0.185:2	./.	./.	0/1:27,5:27:33:0.156:2	./.	./.	./.	0/1:38,10:17:49:0.208:2	0/1:39,8:17:47:0.170:2	0/1:33,8:22:41:0.195:2	./.
chr1	22201438	rs41307806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:30:80:0.488:2	./.	./.	./.	./.
chr1	22206649	rs989994	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,152:33:152:1.00:2	0/1:0,126:32:126:1.00:2	0/1:1,28:33:29:0.966:2	0/1:0,168:33:168:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,172:32:172:1.00:2	0/1:1,151:32:152:0.993:2	0/1:1,155:32:156:0.994:2	0/1:0,143:34:143:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,161:33:161:1.00:2
chr1	22206942	rs1874793	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,181:31:182:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,166:31:166:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,172:31:172:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,112:31:112:1.00:2
chr1	22207235	rs1874792	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:0,19:25:19:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,44:28:44:1.00:2	0/1:1,36:28:37:0.973:2	0/1:0,27:27:27:1.00:2
chr1	22207874	rs62642536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,38:32:75:0.514:2	./.	./.
chr1	22214040	rs41310388	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,81:32:142:0.570:2	./.	./.	./.	./.	./.	./.	./.
chr1	22214046	rs41307868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,58:29:118:0.492:2	./.	./.	./.	./.
chr1	22214127	rs2229478	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,69:31:131:0.527:2	0/1:54,26:29:80:0.325:2	./.	0/1:68,93:30:161:0.578:2	0/1:5,151:29:156:0.968:2	./.	./.	0/1:90,71:30:161:0.441:2	0/1:0,162:31:162:1.00:2	0/1:76,67:30:143:0.469:2	0/1:73,78:30:151:0.517:2
chr1	22214464	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,66:32:132:0.500:2	./.	./.	./.	./.	./.	./.
chr1	22216574	rs2254358	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,18:31:56:0.321:2	0/1:26,8:30:34:0.235:2	0/1:0,13:30:13:1.00:2	0/1:44,38:30:82:0.463:2	./.	0/1:1,70:30:71:0.986:2	0/1:7,109:30:116:0.940:2	0/1:59,43:30:102:0.422:2	./.	0/1:28,26:30:55:0.481:2	0/1:48,55:30:103:0.534:2
chr1	22216604	rs2254357	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,16:29:42:0.381:2	0/1:19,7:32:26:0.269:2	0/1:0,10:32:10:1.00:2	0/1:30,27:32:57:0.474:2	./.	0/1:0,51:30:51:1.00:2	0/1:4,57:31:61:0.934:2	0/1:49,28:30:77:0.364:2	./.	0/1:25,26:30:51:0.510:2	0/1:35,33:30:68:0.485:2
chr1	22217108	rs2501260	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:1,19:31:20:0.950:2	0/1:0,5:30:5:1.00:2	0/1:0,53:30:53:1.00:2	0/1:2,76:30:78:0.974:2	0/1:1,83:30:84:0.988:2	0/1:0,75:30:75:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,63:31:63:1.00:2
chr1	22303524	rs202069060	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,13:32:177:0.073:2	./.	./.
chr1	22304909	rs138865928	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,5:28:53:0.094:2	./.	./.	0/1:117,7:32:124:0.056:2	./.	./.	./.	./.	./.	./.
chr1	22307340	rs7528228	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:29:21:1.00:2	0/1:1,17:30:18:0.944:2	0/1:0,3:29:3:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,23:29:24:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,34:31:34:1.00:2
chr1	22307358	rs7528300	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:27:30:1.00:2	0/1:1,23:27:24:0.958:2	0/1:0,7:29:7:1.00:2	0/1:0,36:27:36:1.00:2	0/1:0,27:25:27:1.00:2	0/1:0,28:26:28:1.00:2	0/1:0,46:26:46:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,33:27:33:1.00:2	0/1:0,42:27:42:1.00:2	0/1:0,41:27:41:1.00:2
chr1	22307538	rs7528405	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,45:32:45:1.00:2
chr1	22310190	rs41266015	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,62:30:183:0.339:2	./.	./.
chr1	22310235	rs113497474	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,5:33:185:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	22310262	rs10733033	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,163:31:164:0.994:2	0/1:0,141:29:141:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,190:29:190:1.00:2	0/1:0,187:30:187:1.00:2	0/1:0,192:30:192:1.00:2	0/1:0,187:30:188:1.00:2	0/1:0,175:31:175:1.00:2	0/1:1,167:30:168:0.994:2	0/1:0,173:31:173:1.00:2
chr1	22310725	rs3820287	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,42:30:111:0.378:2	0/1:40,30:28:70:0.429:2	0/1:15,15:29:30:0.500:2	0/1:0,134:30:134:1.00:2	0/1:0,120:30:120:1.00:2	0/1:2,122:30:124:0.984:2	0/1:2,167:30:169:0.988:2	0/1:1,123:30:124:0.992:2	0/1:0,108:30:108:1.00:2	0/1:0,86:30:86:1.00:2	0/1:57,72:29:129:0.558:2
chr1	22310807	rs114365157	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,43:28:95:0.453:2	0/1:27,21:29:48:0.438:2	0/1:14,9:30:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	0/1:85,54:28:140:0.388:2
chr1	22310824	rs1803531	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:28:88:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,118:28:118:1.00:2	0/1:0,123:28:123:1.00:2	0/1:0,160:29:160:1.00:2	0/1:3,169:28:172:0.983:2	0/1:0,157:29:158:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,103:28:103:1.00:2
chr1	22313140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,62:29:160:0.388:2	./.	./.
chr1	22313161	rs1803530	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:28:135:1.00:2	0/1:1,82:28:83:0.988:2	0/1:0,25:28:25:1.00:2	0/1:2,146:29:148:0.986:2	0/1:1,169:28:170:0.994:2	0/1:0,163:29:163:1.00:2	0/1:1,175:29:176:0.994:2	0/1:2,166:28:168:0.988:2	0/1:0,142:30:142:1.00:2	0/1:1,132:28:133:0.992:2	0/1:0,152:28:153:1.00:2
chr1	22315738	rs4655006	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,29:30:111:0.261:2	0/1:108,58:30:166:0.349:2	0/1:39,18:28:57:0.316:2	0/1:68,77:31:145:0.531:2	0/1:16,103:28:119:0.866:2	0/1:63,65:28:128:0.508:2	0/1:74,68:27:142:0.479:2	0/1:44,80:25:124:0.645:2	0/1:130,20:28:150:0.133:2	0/1:3,81:29:84:0.964:2	0/1:79,32:29:111:0.288:2
chr1	22315750	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,21:10:149:0.142:2	./.	./.	./.	0/1:127,23:11:150:0.153:2	./.	./.	./.
chr1	22315762	rs202129706	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:117,14:14:131:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,13:15:115:0.113:2	0/1:102,16:12:118:0.136:2
chr1	22324705	rs7534936	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,188:29:190:0.989:2	0/1:5,147:28:152:0.967:2	0/1:30,21:29:51:0.412:2	./.	0/1:6,181:29:187:0.968:2	./.	./.	0/1:101,95:29:196:0.485:2	0/1:0,189:30:189:1.00:2	0/1:6,188:30:194:0.969:2	0/1:4,186:29:190:0.979:2
chr1	22328207	rs11541414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,89:32:169:0.527:2	./.	./.
chr1	22328228	rs59115023	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,83:33:175:0.474:2	./.	./.
chr1	22329534	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:33:60:0.467:2	0/1:17,21:32:38:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	22332008	rs56968853	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,24:32:135:0.178:2	0/1:50,18:32:68:0.265:2	0/1:4,3:33:7:0.429:2	0/1:107,49:31:156:0.314:2	0/1:137,49:31:187:0.263:2	0/1:131,42:32:173:0.243:2	0/1:90,52:33:142:0.366:2	0/1:108,26:30:134:0.194:2	0/1:121,54:34:175:0.309:2	0/1:118,38:32:156:0.244:2	0/1:103,49:32:152:0.322:2
chr1	22333374	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,7:31:191:0.037:2	./.	./.
chr1	22333419	rs138658162	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:180,9:25:189:0.048:2	./.	./.	./.	./.	./.	./.	0/1:185,7:28:192:0.036:2	0/1:183,5:29:188:0.027:2	./.	0/1:180,8:26:188:0.043:2
chr1	22333468	rs143596163	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:188,6:29:194:0.031:2	./.	./.	0/1:186,6:29:192:0.031:2	0/1:186,11:30:197:0.056:2	0/1:191,5:29:196:0.026:2	0/1:188,8:30:196:0.041:2	0/1:181,14:29:195:0.072:2	0/1:189,5:29:194:0.026:2	0/1:188,5:30:193:0.026:2	0/1:177,10:28:187:0.053:2
chr1	22333954	rs74062237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:32:94:0.436:2	./.	./.
chr1	22333988	rs112024506	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,5:27:59:0.085:2	./.	./.	0/1:97,7:30:104:0.067:2	0/1:106,7:32:114:0.062:2	0/1:79,4:32:83:0.048:2	0/1:121,16:30:138:0.117:2	0/1:96,12:32:108:0.111:2	0/1:105,9:27:114:0.079:2	0/1:79,11:32:90:0.122:2	0/1:58,5:22:64:0.079:2
chr1	22336257	rs111718190	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:26:150:0.033:2	./.	./.	./.
chr1	22336277	rs3820285	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:31:74:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,119:32:119:1.00:2	0/1:1,180:32:181:0.994:2	0/1:2,172:32:174:0.989:2	0/1:124,62:32:186:0.333:2	0/1:0,144:33:145:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,92:30:92:1.00:2
chr1	22336305	rs9187	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,84:30:99:0.848:2	0/1:11,72:31:83:0.867:2	0/1:22,4:30:26:0.154:2	./.	0/1:4,115:30:119:0.966:2	./.	./.	0/1:130,59:29:189:0.312:2	./.	0/1:10,86:30:96:0.896:2	0/1:15,105:30:121:0.875:2
chr1	22336308	rs12908	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,82:32:98:0.837:2	0/1:11,71:32:82:0.866:2	0/1:21,4:32:25:0.160:2	./.	0/1:8,114:32:122:0.934:2	./.	./.	0/1:131,58:32:189:0.307:2	./.	0/1:11,86:32:97:0.887:2	0/1:21,104:31:126:0.832:2
chr1	22336314	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:190:0.032:2	./.	./.
chr1	22336643	rs60189068	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:111,85:32:196:0.434:2	0/1:118,76:32:194:0.392:2	0/1:58,10:32:68:0.147:2	./.	0/1:112,68:32:180:0.378:2	./.	./.	0/1:147,42:32:189:0.222:2	0/1:61,117:33:178:0.657:2	0/1:116,79:31:196:0.405:2	0/1:95,93:32:188:0.495:2
chr1	22338926	rs200309031	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,64:32:159:0.403:2	0/1:59,57:30:116:0.491:2	0/1:49,5:30:54:0.093:2	0/1:100,40:30:140:0.286:2	0/1:9,155:28:164:0.945:2	0/1:114,34:31:148:0.230:2	0/1:86,49:29:135:0.363:2	0/1:87,62:30:149:0.416:2	0/1:145,25:30:170:0.147:2	0/1:9,140:31:149:0.940:2	0/1:86,54:31:140:0.386:2
chr1	22338938	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,22:12:141:0.156:2	./.	0/1:116,20:10:136:0.147:2	./.	0/1:120,20:10:140:0.143:2	./.	./.	./.
chr1	22408251	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.
chr1	22408262	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.
chr1	22453842	rs6678992	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,40:30:68:0.588:2	0/1:36,31:27:67:0.463:2	./.	./.	0/1:52,37:29:89:0.416:2	./.	0/1:78,43:29:121:0.355:2	./.	0/1:77,79:30:156:0.506:2	./.	./.
chr1	22453975	rs2235527	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,37:30:66:0.561:2	0/1:21,24:30:45:0.533:2	./.	./.	0/1:57,53:30:110:0.482:2	./.	0/1:57,63:30:120:0.525:2	./.	0/1:63,49:31:112:0.438:2	./.	./.
chr1	22835677	rs209729	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,57:32:111:0.514:2	0/1:25,24:32:49:0.490:2	./.	0/1:0,92:32:92:1.00:2	0/1:38,42:32:80:0.525:2	0/1:46,61:31:107:0.570:2	0/1:0,78:32:78:1.00:2	0/1:1,95:32:96:0.990:2	0/1:64,52:33:116:0.448:2	0/1:0,85:33:85:1.00:2	0/1:0,101:32:101:1.00:2
chr1	22838194	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	22843827	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:32:27:0.148:2	./.	./.	./.	./.	./.	./.
chr1	22843858	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.
chr1	22846709	rs209720	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,13:32:13:1.00:2
chr1	22852715	rs881646	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,22:31:50:0.440:2	0/1:27,11:30:38:0.289:2	./.	0/1:36,25:31:61:0.410:2	./.	0/1:23,22:29:45:0.489:2	0/1:0,43:31:43:1.00:2	0/1:33,40:31:73:0.548:2	./.	0/1:0,38:31:38:1.00:2	0/1:41,38:29:79:0.481:2
chr1	22902772	rs56218493	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,72:31:167:0.431:2	./.	0/1:90,72:31:162:0.444:2	0/1:101,76:31:177:0.429:2	./.	0/1:75,67:32:142:0.472:2	./.
chr1	22903089	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.
chr1	22903229	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,79:30:147:0.537:2	./.	./.	./.	./.	./.	./.
chr1	22915674	rs56044578	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,50:31:78:0.641:2	./.	0/1:30,38:30:68:0.559:2	0/1:68,39:31:107:0.364:2	./.	0/1:33,47:31:80:0.588:2	./.
chr1	22915753	rs606002	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,13:32:32:0.406:2	0/1:2,36:32:38:0.947:2	./.	0/1:0,37:31:37:1.00:2	0/1:10,14:33:24:0.583:2	./.	0/1:12,6:32:18:0.333:2	0/1:0,21:32:21:1.00:2
chr1	22915858	rs76452513	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	0/1:6,4:31:10:0.400:2	./.	./.	./.
chr1	22919904	rs209696	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,31:30:77:0.403:2	0/1:38,21:30:59:0.356:2	./.	0/1:53,29:29:82:0.354:2	./.	./.	0/1:1,80:27:81:0.988:2	./.	./.	0/1:0,54:29:54:1.00:2	./.
chr1	22920100	rs55964751	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,55:31:92:0.598:2	./.	./.	./.	./.	./.	./.	./.
chr1	22923873	rs999765	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:31:57:0.421:2
chr1	22927408	rs56055011	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.
chr1	22927503	rs62618734	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:30:98:0.500:2	./.	./.	./.	./.
chr1	22928172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:84:0.049:2	./.	./.	./.	./.
chr1	22965438	rs172378	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	./.	./.	0/1:14,6:32:20:0.300:2	0/1:16,7:31:23:0.304:2	./.	0/1:0,6:31:6:1.00:2	0/1:7,3:32:10:0.300:2	./.	0/1:0,14:32:14:1.00:2	./.
chr1	22970642	rs15940	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,57:32:99:0.576:2	0/1:14,23:31:37:0.622:2	./.	0/1:35,50:32:85:0.588:2	./.	./.	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.
chr1	23101688	rs1561624	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,63:33:131:0.485:2	0/1:37,42:33:79:0.532:2	0/1:1,30:34:31:0.968:2	0/1:0,161:33:161:1.00:2	0/1:1,122:33:123:0.992:2	0/1:78,70:32:148:0.473:2	0/1:5,125:33:130:0.962:2	0/1:0,146:33:146:1.00:2	./.	0/1:0,140:33:140:1.00:2	0/1:86,75:32:161:0.466:2
chr1	23111504	rs202178471	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:87,7:24:94:0.074:2	./.	./.	0/1:96,17:18:113:0.150:2	./.	0/1:117,23:12:140:0.164:2	./.	0/1:132,17:12:149:0.114:2	./.	./.	./.
chr1	23208925	rs2229872	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,56:33:107:0.523:2	./.	./.
chr1	23219493	rs309472	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:101:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,88:32:88:1.00:2
chr1	23234481	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:34:141:0.028:2
chr1	23235551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.
chr1	23236997	rs55993650	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,42:32:86:0.488:2	0/1:29,21:32:50:0.420:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	23280424	rs12048993	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,45:31:86:0.523:2	0/1:15,23:32:38:0.605:2	./.	./.	0/1:1,71:31:72:0.986:2	0/1:47,56:32:103:0.544:2	./.	./.	0/1:0,90:32:90:1.00:2	0/1:29,27:31:56:0.482:2	0/1:0,41:32:41:1.00:2
chr1	23346416	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:27:71:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr1	23408727	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2
chr1	23415518	rs12066671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,99:32:180:0.550:2	./.	./.
chr1	23417806	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	23418153	rs10799790	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,102:31:102:1.00:2	0/1:0,48:32:48:1.00:2	./.	0/1:79,52:31:131:0.397:2	0/1:0,86:31:86:1.00:2	0/1:52,64:30:116:0.552:2	0/1:77,49:32:126:0.389:2	0/1:0,140:31:140:1.00:2	0/1:82,57:31:139:0.410:2	0/1:0,92:31:92:1.00:2	0/1:1,126:31:127:0.992:2
chr1	23419261	rs477717	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,89:30:92:0.978:2	0/1:0,44:30:44:1.00:2	./.	0/1:85,45:30:131:0.346:2	0/1:1,96:30:97:0.990:2	0/1:60,51:29:112:0.459:2	0/1:62,57:30:119:0.479:2	0/1:0,114:30:114:1.00:2	0/1:0,78:30:79:1.00:2	0/1:0,76:30:77:1.00:2	0/1:1,91:30:93:0.989:2
chr1	23419283	rs35917050	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:30:101:0.525:2	./.	./.	./.	./.
chr1	23419374	rs3765407	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:21,17:30:38:0.447:2	0/1:1,19:32:20:0.950:2	0/1:16,12:31:28:0.429:2	0/1:10,10:32:20:0.500:2	0/1:0,40:32:40:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,38:31:38:1.00:2
chr1	23419383	rs477830	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:17,19:32:36:0.528:2	0/1:0,18:30:18:1.00:2	0/1:14,9:32:23:0.391:2	0/1:5,7:32:12:0.583:2	0/1:0,42:32:42:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,33:32:33:1.00:2
chr1	23419855	rs1983965	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,189:31:195:0.974:2	0/1:0,177:30:177:1.00:2	./.	0/1:107,91:31:198:0.460:2	0/1:0,184:30:184:1.00:2	0/1:111,83:31:195:0.428:2	0/1:104,80:30:184:0.435:2	0/1:3,193:31:196:0.985:2	0/1:0,187:32:187:1.00:2	0/1:0,192:31:192:1.00:2	0/1:4,184:30:188:0.979:2
chr1	23519633	rs6300	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:29:6:0.833:2	0/1:15,18:30:33:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr1	23520761	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,4:34:170:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	23520797	rs8192527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,73:33:151:0.483:2	./.	./.	./.
chr1	23521156	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2
chr1	23688933	rs2849028	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,36:32:95:0.379:2	0/1:30,37:32:67:0.552:2	0/1:10,10:32:20:0.500:2	0/1:47,54:32:101:0.535:2	0/1:1,115:31:116:0.991:2	0/1:2,140:31:142:0.986:2	0/1:1,130:32:131:0.992:2	0/1:3,126:31:129:0.977:2	0/1:53,48:33:101:0.475:2	0/1:1,104:32:106:0.990:2	0/1:0,112:32:112:1.00:2
chr1	23689083	rs3795308	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,40:31:108:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr1	23696152	rs665977	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,21:32:21:1.00:2	0/1:1,4:31:5:0.800:2	0/1:0,49:31:49:1.00:2	0/1:2,64:30:67:0.970:2	0/1:1,48:30:49:0.980:2	0/1:0,57:31:57:1.00:2	0/1:0,56:30:56:1.00:2	0/1:31,31:32:62:0.500:2	0/1:0,31:31:31:1.00:2	0/1:0,58:29:58:1.00:2
chr1	23697617	rs638722	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,64:32:121:0.529:2	0/1:29,19:31:48:0.396:2	./.	0/1:52,66:32:118:0.559:2	./.	./.	./.	./.	./.	./.	./.
chr1	23698120	rs754984	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:33:57:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr1	23751140	rs71514235	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,26:31:26:1.00:2	0/1:9,8:29:17:0.471:2	./.	0/1:0,13:29:13:1.00:2	0/1:0,8:30:8:1.00:2
chr1	23759632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.
chr1	23759743	rs140136454	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	23761028	rs74415268	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,35:30:74:0.473:2	0/1:40,43:32:84:0.518:2	./.	./.
chr1	23763065	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2
chr1	23763956	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,5:30:99:0.051:2	./.	./.	./.	./.	./.	./.
chr1	23767669	rs12117542	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,70:32:161:0.435:2	0/1:56,83:33:139:0.597:2	./.	./.
chr1	23847464	rs2075995	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,114:31:114:1.00:2	0/1:0,71:31:71:1.00:2	./.	./.	0/1:5,175:31:180:0.972:2	0/1:1,179:31:180:0.994:2	0/1:180,4:32:184:0.022:2	./.	./.	0/1:62,59:31:121:0.488:2	0/1:0,133:32:133:1.00:2
chr1	23847534	rs41306580	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,62:30:115:0.539:2	./.	./.	./.
chr1	23885498	rs11574	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:27:3:1.00:2	0/1:0,57:30:57:1.00:2	./.	0/1:0,82:30:82:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,72:29:73:1.00:2	0/1:0,64:30:64:1.00:2	0/1:2,57:29:59:0.966:2	0/1:54,25:27:80:0.316:2
chr1	23885773	rs146163818	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,29:31:85:0.358:2	./.
chr1	23965704	rs10917403	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,39:32:81:0.481:2	0/1:27,30:33:57:0.526:2	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	0/1:63,58:33:121:0.479:2	0/1:59,52:34:111:0.468:2	./.	0/1:57,58:33:115:0.504:2
chr1	24018277	rs10917413	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,77:32:77:1.00:2
chr1	24022833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,3:35:72:0.042:2	./.	./.
chr1	24070033	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.
chr1	24077451	rs2235541	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,24:30:25:0.960:2	./.	0/1:14,14:30:28:0.500:2	./.	0/1:12,6:31:18:0.333:2	0/1:19,15:32:34:0.441:2
chr1	24077943	rs139059717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:31:40:0.500:2	./.	./.
chr1	24077957	rs35797868	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,33:30:36:0.917:2	./.	0/1:23,24:30:47:0.511:2	./.	./.	./.
chr1	24078962	rs114897920	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,38:31:86:0.442:2
chr1	24082402	rs78642828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,49:31:76:0.645:2	./.
chr1	24083494	rs2076345	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,4:30:15:0.267:2	0/1:84,60:30:145:0.417:2	0/1:60,48:29:108:0.444:2	./.	0/1:88,64:30:152:0.421:2	./.	./.	./.	0/1:69,59:30:128:0.461:2
chr1	24119207	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.
chr1	24119249	rs375628913	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,5:32:80:0.063:2	./.	./.
chr1	24120839	rs115000504	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,29:33:48:0.604:2	./.
chr1	24122717	rs143694860	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,77:30:180:0.428:2	./.	./.
chr1	24122986	rs760941	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,8:27:8:1.00:2	0/1:5,3:29:8:0.375:2	0/1:1,3:25:5:0.750:2	./.	./.	./.
chr1	24134721	rs719400	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,64:32:64:1.00:2	0/1:5,3:33:8:0.375:2	0/1:97,84:33:181:0.464:2	0/1:87,77:32:164:0.470:2	0/1:0,162:32:162:1.00:2	0/1:0,183:32:183:1.00:2	0/1:2,192:32:194:0.990:2	0/1:0,166:33:166:1.00:2	0/1:1,131:32:132:0.992:2	0/1:0,141:31:141:1.00:2
chr1	24175169	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,13:16:119:0.111:2
chr1	24180962	rs13551	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:30:27:0.481:2	./.	0/1:52,69:29:121:0.570:2	./.	0/1:72,76:30:148:0.514:2	./.	./.	./.	0/1:73,75:30:148:0.507:2
chr1	24194482	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.
chr1	24201067	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,37:30:67:0.552:2	./.
chr1	24201094	rs2229581	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,102:31:103:0.990:2	0/1:0,57:31:57:1.00:2	./.	0/1:76,82:31:158:0.519:2	./.	0/1:2,122:30:124:0.984:2	0/1:86,56:30:142:0.394:2	0/1:1,130:30:131:0.992:2	0/1:92,71:31:163:0.436:2	0/1:2,94:31:97:0.979:2	0/1:101,87:30:189:0.463:2
chr1	24201109	rs2229580	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,103:32:104:0.990:2	0/1:0,64:31:64:1.00:2	./.	0/1:88,91:32:179:0.508:2	./.	0/1:2,139:31:141:0.986:2	0/1:95,72:31:167:0.431:2	0/1:1,157:31:158:0.994:2	0/1:105,78:32:183:0.426:2	0/1:2,108:32:110:0.982:2	0/1:105,90:32:195:0.462:2
chr1	24201162	rs2229579	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:29:12:0.333:2	0/1:100,78:29:178:0.438:2	0/1:93,82:29:175:0.469:2	./.	./.	./.	./.	./.	./.
chr1	24201262	rs2502993	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,77:32:78:0.987:2	0/1:1,62:32:63:0.984:2	./.	0/1:83,58:33:141:0.411:2	./.	0/1:1,123:32:124:0.992:2	0/1:78,73:32:151:0.483:2	0/1:0,104:32:104:1.00:2	0/1:61,72:33:133:0.541:2	0/1:0,94:33:94:1.00:2	0/1:53,37:33:90:0.411:2
chr1	24201357	rs4649124	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:2,54:32:56:0.964:2	./.	0/1:55,44:32:99:0.444:2	./.	0/1:1,94:32:95:0.989:2	0/1:77,66:32:143:0.462:2	0/1:0,132:33:132:1.00:2	0/1:43,55:33:99:0.561:2	0/1:0,70:32:70:1.00:2	0/1:34,31:31:65:0.477:2
chr1	24201448	rs3003336	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:31,26:29:57:0.456:2	./.	0/1:2,50:30:52:0.962:2	0/1:30,36:29:66:0.545:2	0/1:0,86:30:86:1.00:2	0/1:32,39:31:71:0.549:2	0/1:2,50:31:52:0.962:2	0/1:28,23:31:51:0.451:2
chr1	24201643	rs2501431	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,93:30:95:0.989:2	0/1:1,50:30:51:0.980:2	./.	0/1:72,52:29:124:0.419:2	./.	0/1:0,109:29:109:1.00:2	0/1:100,79:29:179:0.441:2	0/1:1,116:29:117:0.991:2	0/1:62,60:31:122:0.492:2	0/1:0,82:30:82:1.00:2	0/1:72,52:29:124:0.419:2
chr1	24201919	rs2502992	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,42:32:44:0.955:2	0/1:0,25:32:25:1.00:2	./.	0/1:43,21:32:64:0.328:2	./.	0/1:0,38:32:38:1.00:2	0/1:70,27:32:97:0.278:2	0/1:0,52:32:52:1.00:2	0/1:60,24:33:84:0.286:2	0/1:0,46:32:46:1.00:2	0/1:38,24:31:62:0.387:2
chr1	24201920	rs2501432	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,41:30:43:0.953:2	0/1:0,26:29:26:1.00:2	./.	0/1:43,21:28:64:0.328:2	./.	0/1:0,38:30:38:1.00:2	0/1:69,27:30:96:0.281:2	0/1:0,52:30:52:1.00:2	0/1:61,24:30:85:0.282:2	0/1:0,46:29:46:1.00:2	0/1:38,24:28:62:0.387:2
chr1	24288193	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,6:32:28:0.214:2	0/1:26,7:32:33:0.212:2	./.	0/1:30,9:31:39:0.231:2	0/1:24,5:32:29:0.172:2	0/1:27,17:32:44:0.386:2	0/1:36,10:31:46:0.217:2	0/1:27,12:32:39:0.308:2	0/1:21,12:32:33:0.364:2	0/1:15,10:33:25:0.400:2	0/1:34,14:32:48:0.292:2
chr1	24288284	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:49,9:33:58:0.155:2	0/1:32,3:31:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,13:32:60:0.217:2	./.
chr1	24288386	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2
chr1	24288402	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	0/1:50,6:31:56:0.107:2
chr1	24288432	rs115735413	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,12:33:13:0.923:2	0/1:1,6:32:7:0.857:2	./.	0/1:2,17:31:19:0.895:2	./.	0/1:41,7:32:48:0.146:2	./.	./.	./.	./.	./.
chr1	24288476	rs72540327	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,40:32:84:0.476:2	0/1:25,27:32:52:0.519:2	0/1:1,95:32:97:0.990:2	0/1:1,92:33:93:0.989:2	0/1:16,51:33:67:0.761:2	0/1:20,46:32:67:0.697:2
chr1	24289057	rs148391376	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:29:87:0.460:2	0/1:60,29:30:89:0.326:2	0/1:0,106:30:107:1.00:2	0/1:74,48:31:122:0.393:2	0/1:41,47:30:88:0.534:2	0/1:99,59:29:158:0.373:2
chr1	24298399	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.
chr1	24298422	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.
chr1	24298467	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	./.
chr1	24387822	rs7553075	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,59:33:95:0.621:2	0/1:30,29:33:59:0.492:2	./.	0/1:55,54:32:109:0.495:2	./.	0/1:65,64:32:129:0.496:2	0/1:35,41:32:76:0.539:2	./.	./.	./.	0/1:61,68:33:129:0.527:2
chr1	24392600	rs6682222	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,71:30:160:0.444:2	./.	0/1:100,57:30:157:0.363:2	0/1:92,55:31:148:0.374:2	./.	./.	./.	./.
chr1	24392671	rs6699525	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,64:32:164:0.390:2	./.	0/1:110,61:32:171:0.357:2	0/1:114,46:32:160:0.288:2	./.	./.	./.	./.
chr1	24393563	rs16829071	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,91:32:194:0.469:2	./.	0/1:96,95:32:191:0.497:2	0/1:110,85:33:195:0.436:2	./.	./.	./.	./.
chr1	24394811	rs12145360	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,46:32:110:0.418:2	./.	0/1:68,46:32:114:0.404:2	0/1:67,41:32:108:0.380:2	./.	./.	./.	./.
chr1	24406535	rs35446243	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:31:46:0.511:2	0/1:18,22:30:40:0.550:2	./.	./.
chr1	24406647	rs4649175	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,22:30:64:0.344:2	0/1:24,14:31:38:0.368:2	0/1:0,14:28:14:1.00:2	0/1:28,28:30:56:0.500:2	0/1:1,69:30:70:0.986:2	./.	0/1:47,26:29:73:0.356:2	./.	./.	0/1:2,58:31:60:0.967:2	0/1:28,30:31:58:0.517:2
chr1	24409165	rs4320728	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,36:30:67:0.537:2	./.	0/1:27,20:30:48:0.426:2	0/1:43,26:30:69:0.377:2	./.	./.	./.	./.
chr1	24409191	rs4320729	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,24:33:50:0.480:2	0/1:9,8:33:17:0.471:2	0/1:0,9:32:9:1.00:2	0/1:40,28:32:68:0.412:2	0/1:1,61:32:62:0.984:2	./.	0/1:27,36:33:63:0.571:2	./.	./.	0/1:0,30:33:30:1.00:2	0/1:19,17:33:36:0.472:2
chr1	24413159	rs6424152	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,12:31:32:0.375:2	0/1:14,8:32:23:0.364:2	0/1:0,3:32:3:1.00:2	0/1:19,35:32:54:0.648:2	0/1:0,40:31:40:1.00:2	./.	0/1:37,13:31:50:0.260:2	./.	./.	0/1:0,20:32:20:1.00:2	0/1:25,20:31:45:0.444:2
chr1	24413236	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.
chr1	24416059	rs4393101	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,47:33:47:1.00:2	0/1:22,29:33:51:0.569:2	0/1:0,27:33:27:1.00:2	0/1:0,51:32:51:1.00:2
chr1	24416070	rs7533060	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,19:29:48:0.396:2	0/1:11,11:29:22:0.500:2	0/1:0,6:31:6:1.00:2	0/1:24,16:31:40:0.400:2	0/1:0,45:30:45:1.00:2	./.	0/1:23,20:30:43:0.465:2	./.	./.	0/1:0,28:31:28:1.00:2	0/1:41,20:30:61:0.328:2
chr1	24416133	rs4276859	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,24:30:57:0.421:2	./.	0/1:39,36:30:75:0.480:2	0/1:47,36:32:83:0.434:2	./.	./.	./.	./.
chr1	24416628	rs72648548	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,20:28:57:0.351:2	0/1:20,18:28:38:0.474:2	./.	./.	./.	0/1:27,25:29:52:0.481:2	./.	0/1:43,39:28:82:0.476:2	./.	./.	./.
chr1	24417415	rs6700245	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,32:28:63:0.508:2	0/1:24,25:29:49:0.510:2	./.	./.	./.	0/1:54,47:27:101:0.465:2	0/1:60,85:28:145:0.586:2	./.	0/1:65,66:29:131:0.504:2	0/1:0,79:29:79:1.00:2	./.
chr1	24418768	rs7556176	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,20:27:42:0.476:2	0/1:18,14:28:32:0.438:2	0/1:0,5:30:5:1.00:2	0/1:1,68:28:69:0.986:2	0/1:1,58:28:59:0.983:2	./.	0/1:30,28:25:58:0.483:2	./.	./.	0/1:27,29:28:57:0.518:2	0/1:32,37:26:69:0.536:2
chr1	24419496	rs4233050	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,5:31:25:0.200:2	0/1:12,7:28:19:0.368:2	0/1:1,8:30:9:0.889:2	0/1:0,42:30:42:1.00:2	0/1:0,38:29:38:1.00:2	./.	0/1:22,40:31:62:0.645:2	./.	./.	0/1:20,14:29:34:0.412:2	0/1:15,22:30:37:0.595:2
chr1	24421474	rs6678540	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,31:31:64:0.484:2	0/1:31,18:30:49:0.367:2	0/1:0,15:30:15:1.00:2	0/1:2,94:31:96:0.979:2	0/1:1,71:30:72:0.986:2	./.	0/1:63,49:31:112:0.438:2	./.	./.	0/1:39,47:31:86:0.547:2	0/1:42,51:31:93:0.548:2
chr1	24421950	rs4319261	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,25:33:46:0.543:2	0/1:13,10:33:23:0.435:2	0/1:1,5:32:6:0.833:2	0/1:0,54:32:54:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:22,21:32:43:0.488:2	./.	./.	0/1:42,26:33:68:0.382:2	0/1:35,32:33:67:0.478:2
chr1	24424466	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,63:32:180:0.350:2	./.	./.
chr1	24447468	rs3795299	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,42:31:105:0.400:2	./.	0/1:69,46:29:115:0.400:2	0/1:61,46:30:108:0.430:2	0/1:51,38:28:89:0.427:2	./.	./.	0/1:58,48:29:106:0.453:2
chr1	24447943	rs34967816	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:31:56:0.536:2	./.	0/1:26,38:31:64:0.594:2
chr1	24448084	rs17852648	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,25:33:44:0.568:2	0/1:5,17:33:22:0.773:2	0/1:0,4:32:4:1.00:2	0/1:30,27:32:57:0.474:2	0/1:26,42:32:69:0.618:2	0/1:27,42:32:69:0.609:2	0/1:24,26:32:50:0.520:2	0/1:27,37:32:64:0.578:2	./.	0/1:14,27:32:41:0.659:2	./.
chr1	24448097	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,28:30:56:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	24454688	rs16829204	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:55,56:32:111:0.505:2	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	0/1:117,82:31:199:0.412:2	./.	0/1:109,82:32:191:0.429:2	./.	0/1:59,72:32:131:0.550:2
chr1	24460797	rs17852649	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,118:33:120:0.983:2	0/1:2,63:33:65:0.969:2	0/1:12,7:33:19:0.368:2	./.	0/1:0,170:32:170:1.00:2	0/1:82,69:32:151:0.457:2	0/1:3,175:33:179:0.983:2	0/1:98,87:32:185:0.470:2	0/1:0,174:34:174:1.00:2	0/1:0,137:32:137:1.00:2	0/1:73,60:31:133:0.451:2
chr1	24465103	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.
chr1	24465113	rs10903022	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:33:17:0.471:2	0/1:1,105:32:106:0.991:2	./.	0/1:39,41:32:80:0.513:2	./.	0/1:84,39:33:123:0.317:2	./.	./.	0/1:49,50:33:99:0.505:2
chr1	24484108	rs72648587	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,58:29:104:0.558:2	./.	0/1:52,49:29:101:0.485:2	./.	0/1:51,34:29:85:0.400:2
chr1	24496049	rs201766459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,63:31:111:0.568:2	./.	./.	./.	./.	./.
chr1	24496085	rs34654982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:31:53:0.491:2	./.	./.
chr1	24658063	rs2486668	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:67,52:33:119:0.437:2	0/1:64,36:32:100:0.360:2	0/1:11,10:32:21:0.476:2	./.	./.	0/1:115,79:32:194:0.407:2	0/1:104,72:33:176:0.409:2	./.	./.	./.	./.
chr1	24663184	rs34637004	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,36:31:65:0.554:2	./.	./.	./.	0/1:28,20:32:48:0.417:2	./.
chr1	24663654	rs41268749	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24668667	rs11576645	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,56:32:104:0.538:2	0/1:23,36:33:59:0.610:2	0/1:5,8:31:13:0.615:2	./.	0/1:85,81:31:167:0.488:2	./.	./.	./.	./.	./.	0/1:58,57:32:115:0.496:2
chr1	24669383	rs202191841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,52:30:123:0.426:2	./.	./.
chr1	24669459	rs141193530	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24671418	rs116396279	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,80:32:167:0.479:2	./.	./.	./.	0/1:69,70:32:139:0.504:2	./.
chr1	24680915	rs12030057	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:31:113:0.354:2	0/1:34,35:32:69:0.507:2	./.	0/1:26,33:31:59:0.559:2
chr1	24687389	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,8:14:38:0.211:2	./.	./.	./.
chr1	24687446	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:32:30:0.433:2	./.
chr1	24690764	rs545809	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,36:33:79:0.456:2	0/1:24,8:31:32:0.250:2	0/1:7,6:32:13:0.462:2	0/1:1,120:32:121:0.992:2	0/1:40,32:31:72:0.444:2	./.	0/1:57,44:32:101:0.436:2	./.	./.	./.	./.
chr1	24706113	rs3765428	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:31:30:0.133:2	0/1:0,63:31:63:1.00:2	0/1:57,29:32:86:0.337:2	0/1:40,23:30:63:0.365:2	0/1:77,54:31:131:0.412:2
chr1	24706269	rs1064842	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,7:31:35:0.200:2	0/1:2,60:29:62:0.968:2	0/1:25,32:31:57:0.561:2	0/1:30,20:29:50:0.400:2	0/1:47,46:30:93:0.495:2
chr1	24706292	rs1142057	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:31:34:0.324:2	0/1:2,58:30:60:0.967:2	0/1:25,31:30:56:0.554:2	0/1:32,20:30:52:0.385:2	0/1:42,42:30:84:0.500:2
chr1	24710405	rs11538189	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,30:29:84:0.357:2	0/1:59,49:29:108:0.454:2	0/1:66,47:30:113:0.416:2	0/1:43,38:29:81:0.469:2	./.
chr1	24718075	rs2294520	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2	./.	./.	0/1:65,34:32:99:0.343:2
chr1	24718079	rs560219	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,63:32:65:0.969:2	0/1:2,33:31:35:0.943:2	./.	0/1:0,65:30:65:1.00:2	0/1:26,26:31:52:0.500:2	./.	0/1:37,22:30:59:0.373:2	./.	./.	./.	./.
chr1	24771680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:33:142:0.035:2	./.
chr1	24771721	rs144375095	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:33:109:0.468:2	0/1:35,29:32:64:0.453:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24785393	rs2272935	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:62,36:33:98:0.367:2	0/1:33,19:32:53:0.365:2	./.	./.	./.	./.	./.	0/1:66,47:32:113:0.416:2	./.	./.	0/1:74,58:33:132:0.439:2
chr1	24786966	rs201651123	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,57:31:125:0.456:2	0/1:30,27:29:58:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24859617	rs196429	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,21:31:41:0.525:2	0/1:14,16:29:30:0.533:2	0/1:1,5:30:6:0.833:2	./.	./.	./.	0/1:25,24:30:50:0.490:2	0/1:0,66:29:67:1.00:2	./.	0/1:20,16:31:36:0.444:2	0/1:19,17:32:38:0.472:2
chr1	24859665	rs196430	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,26:31:56:0.464:2	0/1:9,14:32:23:0.609:2	0/1:0,10:33:10:1.00:2	./.	./.	./.	0/1:21,27:32:48:0.563:2	0/1:0,70:32:70:1.00:2	./.	0/1:21,19:32:40:0.475:2	0/1:29,23:31:52:0.442:2
chr1	24861704	rs196432	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,18:30:43:0.419:2	0/1:18,20:32:38:0.526:2	0/1:2,5:29:7:0.714:2	./.	./.	./.	0/1:32,26:31:58:0.448:2	0/1:0,52:32:52:1.00:2	./.	0/1:31,27:32:58:0.466:2	0/1:30,29:31:59:0.492:2
chr1	24989223	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24995778	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,22:9:139:0.159:2	./.	./.	./.
chr1	25291010	rs6672420	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,24:29:53:0.453:2	0/1:0,41:30:42:1.00:2	0/1:0,63:31:63:1.00:2	0/1:35,33:29:68:0.485:2	0/1:25,21:30:46:0.457:2	0/1:22,21:31:43:0.488:2	0/1:21,33:31:54:0.611:2
chr1	25554663	rs34639798	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:31:43:0.442:2	0/1:22,7:30:29:0.241:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25558970	rs142656383	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:32:38:0.421:2	0/1:20,13:32:33:0.394:2
chr1	25570081	rs1043879	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:96,81:33:177:0.458:2	0/1:60,56:32:116:0.483:2	./.	0/1:101,92:32:193:0.477:2	./.	0/1:84,94:32:178:0.528:2	./.	./.	./.	0/1:90,87:33:177:0.492:2	0/1:104,72:33:176:0.409:2
chr1	25572984	rs34484514	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:33:77:0.519:2	./.	./.
chr1	25573016	rs34619962	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,38:32:99:0.384:2	./.	./.	./.
chr1	25573023	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,35:30:71:0.493:2	./.	./.
chr1	25573233	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:29:70:0.057:2	./.	./.	./.	./.
chr1	25617176	rs201703675	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.
chr1	25617179	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.
chr1	25617251	rs17418085	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:35:10:0.400:2	./.	./.	./.	./.	./.	./.
chr1	25627552	rs1053355	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,79:33:166:0.476:2	0/1:57,56:33:113:0.496:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25628043	rs1053356	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,63:33:130:0.485:2	0/1:42,36:32:78:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25628073	rs1053359	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	0/1:80,3:35:83:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25628088	rs1053360	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25629830	rs150606530	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,75:32:170:0.441:2	0/1:56,35:32:91:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25643553	rs199998930	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2
chr1	25669534	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:34:199:0.025:2	./.	./.
chr1	25712250	rs1053374	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,69:32:135:0.511:2	0/1:50,51:31:101:0.505:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25715587	rs200423816	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,20:33:175:0.114:2	0/1:88,16:33:104:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25717297	rs149352457	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,70:29:121:0.579:2	0/1:22,35:29:57:0.614:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25717308	rs1053361	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,73:33:129:0.570:2	0/1:23,35:32:58:0.603:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25729118	rs35109888	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,7:32:185:0.038:2	0/1:116,7:28:123:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25735202	rs676785	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.
chr1	25737829	rs201618411	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,9:18:124:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:22:167:0.042:2
chr1	25747173	rs142971926	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:31:98:0.490:2	0/1:26,26:32:52:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25747230	rs586178	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:70,7:31:77:0.091:2	0/1:84,9:30:93:0.097:2	0/1:81,11:32:92:0.120:2	0/1:94,9:31:103:0.087:2	0/1:85,9:31:94:0.096:2	./.	./.	./.
chr1	25889632	rs6687605	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:31,34:32:65:0.523:2	./.	0/1:2,45:31:47:0.957:2	./.	0/1:43,27:31:70:0.386:2	0/1:38,35:33:73:0.479:2	0/1:31,19:32:50:0.380:2	0/1:0,52:31:52:1.00:2
chr1	25890189	rs28969504	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,36:28:37:0.973:2	0/1:0,20:28:20:1.00:2	./.	0/1:31,23:28:54:0.426:2	./.	0/1:0,55:29:55:1.00:2	./.	0/1:45,41:28:86:0.477:2	0/1:32,24:28:56:0.429:2	0/1:25,27:29:52:0.519:2	0/1:0,35:27:35:1.00:2
chr1	25890247	rs41291058	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:31:58:0.397:2	0/1:15,21:31:36:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	26073242	rs75075607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,40:29:96:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr1	26075769	rs146745645	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,61:32:142:0.430:2	./.	./.	./.	./.
chr1	26107481	rs141849223	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,24:31:63:0.381:2	./.	./.	./.	./.	./.	./.
chr1	26110236	rs79507311	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,7:31:23:0.304:2	./.	./.	./.	./.	./.	0/1:9,16:32:25:0.640:2
chr1	26110267	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	26131654	rs7349185	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,12:29:23:0.522:2	0/1:5,13:31:18:0.722:2	0/1:4,3:29:7:0.429:2	0/1:0,32:29:32:1.00:2	0/1:0,45:29:45:1.00:2	0/1:18,19:30:37:0.514:2	0/1:0,36:30:36:1.00:2	0/1:24,16:28:40:0.400:2	0/1:18,17:30:35:0.486:2	0/1:20,13:30:33:0.394:2	0/1:17,24:30:41:0.585:2
chr1	26135140	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,14:18:110:0.127:2	./.	./.	./.
chr1	26138032	rs148071754	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:32:58:0.534:2	./.	./.
chr1	26138262	rs760597	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,78:33:173:0.451:2	0/1:52,39:32:91:0.429:2	0/1:27,10:33:37:0.270:2	0/1:2,186:32:188:0.989:2	0/1:0,187:32:188:1.00:2	0/1:99,85:32:184:0.462:2	0/1:2,188:33:190:0.989:2	0/1:104,81:32:185:0.438:2	0/1:105,91:34:196:0.464:2	./.	0/1:122,67:33:189:0.354:2
chr1	26140573	rs2294228	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,23:31:56:0.411:2	0/1:10,15:31:25:0.600:2	0/1:6,5:31:11:0.455:2	0/1:0,71:31:71:1.00:2	0/1:0,91:30:91:1.00:2	0/1:48,49:31:98:0.505:2	0/1:0,88:31:88:1.00:2	0/1:60,49:30:109:0.450:2	0/1:38,37:31:75:0.493:2	./.	0/1:28,32:31:60:0.533:2
chr1	26163932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.
chr1	26189517	rs6689014	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,53:31:96:0.552:2	./.	./.	./.	./.	./.	./.
chr1	26357656	rs2736831	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,27:30:55:0.491:2	0/1:15,18:30:33:0.545:2	0/1:0,4:28:4:1.00:2	0/1:0,63:28:63:1.00:2	0/1:1,49:27:50:0.980:2	0/1:22,27:27:49:0.551:2	./.	0/1:1,47:27:48:0.979:2	0/1:35,46:29:81:0.568:2	0/1:30,28:28:58:0.483:2	./.
chr1	26357667	rs11247848	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:28:47:0.426:2	./.	0/1:41,33:30:74:0.446:2	./.	./.
chr1	26361669	rs61742342	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,13:30:19:0.684:2	./.	./.	./.	./.	./.
chr1	26361670	rs61739493	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,13:29:19:0.684:2	./.	./.	./.	./.	./.
chr1	26383711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2
chr1	26384127	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,6:32:71:0.085:2
chr1	26385003	rs2275950	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,105:33:196:0.538:2	./.	0/1:98,97:33:195:0.497:2	./.	./.
chr1	26392824	rs35123100	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:28:10:0.600:2	0/1:49,42:29:91:0.462:2	./.	./.	./.	0/1:72,50:29:122:0.410:2	./.	./.	./.
chr1	26440954	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.
chr1	26448447	rs17257107	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:33:65:0.523:2	./.	./.	0/1:62,59:33:122:0.488:2	./.	./.
chr1	26448849	rs17356867	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:29:76:0.447:2	./.	./.	0/1:36,39:30:75:0.520:2	./.	./.
chr1	26487940	rs3748856	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,4:32:9:0.444:2	0/1:1,3:31:4:0.750:2	./.	0/1:9,8:32:17:0.471:2	./.	0/1:0,12:32:12:1.00:2	0/1:9,4:30:13:0.308:2	./.	./.	0/1:0,4:32:4:1.00:2	./.
chr1	26488019	rs3748857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:30:38:0.474:2	./.	./.	./.
chr1	26488828	rs138228058	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:34:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	26496651	rs7087	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.
chr1	26510574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.
chr1	26511139	rs2297711	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:40,27:29:67:0.403:2	0/1:18,30:31:48:0.625:2	0/1:4,6:29:10:0.600:2	./.	./.	./.	./.	./.	0/1:70,53:31:123:0.431:2	./.	0/1:0,98:30:98:1.00:2
chr1	26515956	rs1045105	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,31:31:75:0.413:2	0/1:22,31:31:53:0.585:2	./.	./.	./.	./.	./.	./.	0/1:53,39:30:92:0.424:2	./.	0/1:2,117:30:119:0.983:2
chr1	26520292	rs12138368	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:31:13:0.692:2	0/1:57,49:31:106:0.462:2	./.	./.	./.	./.	0/1:95,60:32:155:0.387:2	./.	./.
chr1	26526439	rs17257155	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,71:29:147:0.483:2	./.	./.	./.	./.	./.
chr1	26526453	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.
chr1	26527863	rs17163674	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,97:30:98:0.990:2	0/1:1,63:31:64:0.984:2	./.	./.	./.	./.	./.	./.	0/1:65,95:31:161:0.594:2	./.	0/1:3,125:30:128:0.977:2
chr1	26527884	rs41310785	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,13:30:28:0.464:2	0/1:94,92:30:186:0.495:2	./.	./.	./.	./.	0/1:123,70:31:193:0.363:2	./.	./.
chr1	26527951	rs6657616	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,37:30:37:1.00:2	0/1:92,99:31:191:0.518:2	0/1:1,192:31:194:0.995:2	./.	0/1:98,96:30:194:0.495:2	0/1:113,84:31:197:0.426:2	./.	./.	./.
chr1	26582091	rs3795686	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,34:32:72:0.472:2	0/1:21,27:32:48:0.563:2	./.	0/1:43,46:31:89:0.517:2	./.	0/1:54,31:30:85:0.365:2	0/1:60,42:31:102:0.412:2	./.	./.	0/1:0,84:31:84:1.00:2	./.
chr1	26584211	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,3:34:67:0.045:2	./.	./.	./.	./.
chr1	26596080	rs7550997	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,12:31:37:0.324:2	./.	./.	0/1:30,13:32:43:0.302:2	./.	./.	0/1:30,22:30:52:0.423:2
chr1	26608814	rs6672357	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,5:29:5:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,4:24:4:1.00:2	0/1:0,3:29:3:1.00:2
chr1	26608828	rs1134584	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.	0/1:0,3:34:3:1.00:2	./.
chr1	26608843	rs151149897	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	26608883	rs1134580	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	0/1:2,5:33:7:0.714:2
chr1	26608896	rs72872911	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:33:24:0.208:2	./.	0/1:7,3:34:10:0.300:2
chr1	26609259	rs7522905	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,41:30:81:0.506:2	0/1:28,24:31:52:0.462:2	0/1:2,14:31:16:0.875:2	0/1:0,102:31:102:1.00:2	0/1:76,61:31:137:0.445:2	0/1:1,115:31:116:0.991:2	0/1:0,116:31:116:1.00:2	./.	0/1:53,40:31:93:0.430:2	0/1:0,83:31:84:1.00:2	./.
chr1	26610891	rs4332350	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,138:31:138:1.00:2	0/1:1,86:30:87:0.989:2	0/1:0,34:29:34:1.00:2	0/1:1,188:31:189:0.995:2	0/1:1,190:30:191:0.995:2	0/1:0,187:30:187:1.00:2	0/1:2,187:31:189:0.989:2	0/1:121,77:31:198:0.389:2	0/1:0,189:31:189:1.00:2	0/1:0,182:31:182:1.00:2	0/1:0,175:30:175:1.00:2
chr1	26612042	rs11247898	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,37:31:38:0.974:2	0/1:1,39:32:40:0.975:2	0/1:22,20:31:42:0.476:2	0/1:0,40:33:40:1.00:2	0/1:0,41:32:41:1.00:2	0/1:1,30:33:31:0.968:2
chr1	26612460	rs11247900	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,32:30:89:0.360:2	./.	./.	0/1:66,54:31:120:0.450:2	./.	./.	0/1:50,36:30:86:0.419:2
chr1	26620806	rs56039743	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:32:51:0.460:2
chr1	26627478	rs2276712	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:29:104:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,23:30:24:1.00:2	0/1:0,146:27:147:1.00:2	0/1:108,69:27:177:0.390:2	0/1:1,169:28:172:0.994:2	0/1:5,165:27:171:0.971:2	0/1:105,72:28:177:0.407:2	0/1:0,167:28:168:1.00:2	0/1:0,101:26:101:1.00:2	0/1:81,59:27:142:0.421:2
chr1	26646726	rs1071849	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:32:44:0.977:2	0/1:0,24:33:24:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,58:33:58:1.00:2	0/1:35,18:33:53:0.340:2	0/1:0,52:33:52:1.00:2	0/1:0,41:33:41:1.00:2	0/1:51,17:33:68:0.250:2	0/1:0,56:34:56:1.00:2	0/1:0,38:33:38:1.00:2	0/1:36,25:33:62:0.410:2
chr1	26646730	rs17645	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:33:46:0.978:2	0/1:0,20:32:20:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,61:33:61:1.00:2	0/1:35,22:33:57:0.386:2	0/1:0,55:33:55:1.00:2	0/1:0,48:33:48:1.00:2	0/1:50,17:33:67:0.254:2	0/1:0,54:33:54:1.00:2	0/1:0,37:33:37:1.00:2	0/1:37,24:33:61:0.393:2
chr1	26648551	rs11247913	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,55:29:55:1.00:2	0/1:20,21:25:41:0.512:2	0/1:0,49:30:49:1.00:2	0/1:4,33:28:37:0.892:2	0/1:25,33:29:58:0.569:2	0/1:0,59:31:59:1.00:2	0/1:0,49:28:49:1.00:2	0/1:16,24:29:40:0.600:2
chr1	26650661	rs41305769	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:29:48:0.447:2	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:28:56:0.509:2
chr1	26658011	rs80177817	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:30:45:0.422:2	./.	./.	./.	./.	./.
chr1	26663362	rs10751735	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,20:31:32:0.625:2	0/1:11,17:30:28:0.607:2	./.	./.	0/1:36,64:30:100:0.640:2	0/1:34,38:30:72:0.528:2	./.	0/1:40,40:30:81:0.500:2	0/1:0,46:31:46:1.00:2	./.	0/1:0,28:31:28:1.00:2
chr1	26664968	rs11247919	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,14:31:26:0.538:2	0/1:25,24:31:49:0.490:2	./.	0/1:20,20:31:40:0.500:2	0/1:34,25:33:59:0.424:2	./.	0/1:25,19:33:44:0.432:2
chr1	26673076	rs11247924	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,19:30:37:0.528:2	0/1:5,9:30:14:0.643:2	0/1:0,5:30:5:1.00:2	0/1:25,25:30:50:0.500:2	0/1:21,22:29:43:0.512:2	./.	0/1:20,12:30:32:0.375:2	./.	0/1:18,19:30:37:0.514:2	./.	0/1:23,12:30:35:0.343:2
chr1	26673108	rs11247925	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,18:31:39:0.462:2	0/1:10,12:31:22:0.545:2	0/1:0,3:27:3:1.00:2	0/1:27,26:31:53:0.491:2	0/1:23,21:30:44:0.477:2	./.	0/1:21,12:31:33:0.364:2	./.	0/1:18,23:31:42:0.561:2	./.	0/1:29,17:28:46:0.370:2
chr1	26688181	rs11583897	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,29:31:73:0.397:2	./.	./.	./.	./.	./.	./.
chr1	26691174	rs11247933	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,23:33:62:0.371:2	0/1:18,15:32:33:0.455:2	./.	0/1:45,37:32:82:0.451:2	./.	0/1:27,29:31:56:0.518:2	0/1:5,66:32:71:0.930:2	./.	./.	0/1:1,89:32:90:0.989:2	./.
chr1	26691633	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,5:33:26:0.192:2	./.	./.
chr1	26694245	rs10794531	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:29:9:0.778:2	0/1:54,43:29:97:0.443:2	0/1:0,109:29:109:1.00:2	./.	./.	./.	./.	./.	0/1:46,22:27:68:0.324:2
chr1	26694260	rs10794532	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,51:31:105:0.486:2	./.	./.	./.	./.	./.	0/1:42,23:32:65:0.354:2
chr1	26699051	rs6699091	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:31:15:0.733:2	0/1:18,21:30:39:0.538:2	0/1:41,34:31:75:0.453:2	./.	./.	./.	./.	./.	./.
chr1	26700795	rs7520030	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,73:32:74:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,47:32:47:1.00:2
chr1	26786627	rs3816539	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,39:31:91:0.429:2	0/1:56,44:30:100:0.440:2	0/1:0,74:31:74:1.00:2	./.	0/1:69,47:31:117:0.405:2	./.	./.	./.
chr1	26799063	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr1	26799095	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr1	26879920	rs4970490	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,74:29:74:1.00:2	0/1:1,55:30:56:0.982:2	0/1:0,77:30:78:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,54:30:55:1.00:2
chr1	26881675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.
chr1	26883511	rs2229712	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,31:30:71:0.437:2	0/1:23,19:29:42:0.452:2	0/1:8,7:28:15:0.467:2	./.	0/1:100,89:29:189:0.471:2	./.	0/1:93,97:29:192:0.511:2	./.	./.	./.	0/1:51,44:30:95:0.463:2
chr1	26887536	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2
chr1	26887577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,5:27:99:0.051:2	./.	./.	./.	./.
chr1	26887592	rs1064196	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,48:29:98:0.490:2	0/1:34,34:28:68:0.500:2	0/1:0,59:28:59:1.00:2	0/1:43,34:28:77:0.442:2	0/1:40,38:30:78:0.487:2	./.	0/1:40,29:29:69:0.420:2	./.
chr1	26900920	rs12118436	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:29:50:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr1	27089710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.
chr1	27101350	rs146171057	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:31:134:0.037:2	./.	./.	./.	./.
chr1	27101380	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,12:17:135:0.089:2	./.	./.	./.	./.	./.	./.	./.
chr1	27101408	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,7:26:131:0.053:2	./.	0/1:133,6:23:139:0.043:2	0/1:121,5:26:126:0.040:2	./.	0/1:106,5:25:111:0.045:2	./.
chr1	27175157	rs146160422	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,67:31:125:0.540:2
chr1	27190324	rs11542704	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:32:111:0.468:2	./.	0/1:42,51:31:93:0.548:2
chr1	27190855	rs112547702	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,71:26:175:0.406:2	0/1:156,8:23:164:0.049:2	./.	./.	./.
chr1	27190857	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,8:31:109:0.073:2	./.	./.	./.	0/1:148,12:32:160:0.075:2	./.	./.	./.	./.	./.	./.
chr1	27210721	rs3170660	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:29:67:1.00:2	0/1:0,34:28:34:1.00:2	./.	0/1:2,84:30:86:0.977:2	0/1:0,80:29:80:1.00:2	0/1:0,78:29:79:1.00:2	0/1:0,109:29:109:1.00:2	0/1:48,59:29:107:0.551:2	0/1:56,51:30:107:0.477:2	0/1:39,26:28:65:0.400:2	0/1:68,30:28:99:0.306:2
chr1	27215515	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.
chr1	27219896	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,55:32:134:0.410:2
chr1	27223967	rs35243557	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,46:31:109:0.422:2
chr1	27226873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:29:40:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr1	27239920	rs6659176	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,74:28:165:0.451:2	./.	0/1:69,74:28:143:0.517:2
chr1	27268249	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,5:27:195:0.026:2	./.	./.	./.	./.	./.	./.
chr1	27268303	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.	./.
chr1	27269437	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2
chr1	27269519	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,29:32:134:0.216:2	./.	./.	./.	./.	./.	./.
chr1	27277189	rs377244173	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.
chr1	27278521	rs3010110	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,53:30:126:0.421:2	./.	./.	0/1:0,124:31:124:1.00:2	./.	./.	0/1:38,48:31:86:0.558:2	./.
chr1	27278553	rs3010109	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,35:30:81:0.432:2	./.	./.	0/1:0,87:30:87:1.00:2	./.	./.	./.	./.
chr1	27278573	rs17360994	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:29:40:0.575:2	./.	0/1:17,12:25:29:0.414:2
chr1	27332465	rs61737591	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,82:31:187:0.439:2	./.	./.
chr1	27332466	rs61737590	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,82:29:186:0.441:2	./.	0/1:98,65:27:163:0.399:2
chr1	27332877	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:29:19:0.421:2	./.	./.	./.	./.
chr1	27333347	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:32:180:0.028:2	./.	./.	./.
chr1	27426796	rs4266911	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,35:30:35:1.00:2
chr1	27427041	rs4418629	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,184:33:184:1.00:2	0/1:0,189:33:189:1.00:2	0/1:0,155:34:155:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,122:32:122:1.00:2
chr1	27480757	rs34306208	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,52:30:104:0.500:2	./.	./.	0/1:62,53:29:116:0.461:2	./.	0/1:1,78:30:79:0.987:2	0/1:2,66:30:68:0.971:2	./.
chr1	27660731	rs6663062	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,99:32:189:0.524:2	./.	./.	./.	./.	./.	./.
chr1	27661952	rs150461998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,52:31:87:0.598:2	./.	./.	./.	./.	./.	./.
chr1	27676752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.	./.
chr1	27676925	rs6702341	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,17:30:35:0.486:2	0/1:11,9:31:20:0.450:2	0/1:3,3:30:6:0.500:2	0/1:25,20:29:45:0.444:2	0/1:20,21:26:41:0.512:2	./.	0/1:27,29:30:56:0.518:2	./.	0/1:16,19:31:35:0.543:2	0/1:17,23:30:40:0.575:2	./.
chr1	27677409	rs113120872	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,36:29:60:0.600:2	0/1:17,13:29:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	27679797	rs3813795	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,91:29:92:0.989:2	0/1:0,64:28:64:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,151:29:151:1.00:2	0/1:116,58:28:174:0.333:2	./.	0/1:3,124:30:127:0.976:2	./.	0/1:64,59:30:123:0.480:2	0/1:2,115:29:117:0.983:2	0/1:48,35:29:83:0.422:2
chr1	27679954	rs1128918	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,28:31:45:0.622:2	0/1:6,16:32:22:0.727:2	0/1:4,4:31:8:0.500:2	0/1:21,13:33:34:0.382:2	0/1:14,12:30:26:0.462:2	./.	0/1:6,8:31:14:0.571:2	./.	0/1:13,12:33:25:0.480:2	0/1:12,7:33:19:0.368:2	./.
chr1	27680292	rs8533	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,176:32:176:1.00:2	0/1:1,142:32:143:0.993:2	./.	0/1:3,144:32:147:0.980:2	0/1:175,10:33:185:0.054:2	0/1:77,56:33:133:0.421:2	0/1:60,73:32:133:0.549:2	0/1:61,58:32:119:0.487:2
chr1	27681785	rs72882730	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.
chr1	27682530	rs17162549	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,85:31:195:0.438:2	./.	./.	./.	./.	./.	./.
chr1	27687466	rs35659744	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:8,16:27:24:0.667:2	0/1:8,7:31:15:0.467:2	0/1:1,4:31:5:0.800:2	./.	./.	./.	0/1:2,14:30:16:0.875:2	./.	./.	./.	0/1:6,9:28:15:0.600:2
chr1	27688633	rs1138294	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,64:30:120:0.533:2	0/1:30,31:31:62:0.508:2	0/1:10,9:30:19:0.474:2	0/1:71,69:31:140:0.493:2	0/1:82,65:31:147:0.442:2	0/1:152,5:31:158:0.032:2	0/1:86,96:31:182:0.527:2	./.	0/1:73,112:32:185:0.605:2	0/1:72,56:32:128:0.438:2	./.
chr1	27695922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	27709020	rs2504779	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,25:30:46:0.543:2	0/1:19,14:29:33:0.424:2	./.	0/1:31,15:30:46:0.326:2	./.	./.	./.
chr1	27720322	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	27720356	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.
chr1	27875824	rs4908364	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,107:31:107:1.00:2	0/1:0,106:30:108:1.00:2	0/1:0,124:31:125:1.00:2	0/1:2,74:30:76:0.974:2	0/1:0,53:31:53:1.00:2
chr1	27876482	rs2076457	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,31:32:50:0.620:2	0/1:12,9:32:21:0.429:2	0/1:7,3:32:10:0.300:2	0/1:30,26:30:56:0.464:2	0/1:18,26:30:44:0.591:2	0/1:1,64:31:65:0.985:2	0/1:0,32:31:32:1.00:2	0/1:0,43:31:43:1.00:2	0/1:18,35:33:53:0.660:2	0/1:0,58:32:58:1.00:2	0/1:0,26:31:27:1.00:2
chr1	27876493	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:28:51:0.078:2	./.
chr1	27877418	rs113173951	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.
chr1	27878162	rs112179924	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,59:30:109:0.541:2	./.	0/1:76,78:30:154:0.506:2	./.	./.	./.
chr1	28209002	rs76072311	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,44:30:85:0.518:2	./.	./.	./.	./.
chr1	28209305	rs3766398	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,40:32:95:0.421:2	0/1:42,39:32:81:0.481:2	0/1:8,12:31:20:0.600:2	0/1:0,146:32:147:1.00:2	0/1:4,170:32:174:0.977:2	0/1:0,144:32:145:1.00:2	0/1:108,81:33:189:0.429:2	0/1:3,161:32:164:0.982:2	0/1:77,70:33:147:0.476:2	0/1:1,99:31:100:0.990:2	0/1:70,49:31:119:0.412:2
chr1	28209362	rs3766399	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,35:28:92:0.380:2	0/1:35,36:28:71:0.507:2	0/1:5,8:28:13:0.615:2	0/1:1,98:28:99:0.990:2	0/1:1,107:27:108:0.991:2	0/1:0,96:27:96:1.00:2	0/1:87,43:28:130:0.331:2	0/1:0,114:28:114:1.00:2	0/1:79,47:29:126:0.373:2	0/1:1,82:28:83:0.988:2	0/1:73,45:28:118:0.381:2
chr1	28209366	rs3766400	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,35:32:88:0.398:2	0/1:33,34:32:67:0.507:2	0/1:4,6:32:10:0.600:2	0/1:1,91:32:92:0.989:2	0/1:1,97:31:98:0.990:2	0/1:0,90:31:90:1.00:2	0/1:80,46:32:126:0.365:2	0/1:0,107:32:107:1.00:2	0/1:74,41:32:115:0.357:2	0/1:1,77:31:78:0.987:2	0/1:70,44:31:114:0.386:2
chr1	28224195	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:29:153:0.039:2
chr1	28240892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.
chr1	28261701	rs377416441	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,28:31:83:0.337:2	./.	./.
chr1	28268829	rs138466566	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,9:17:96:0.094:2	./.	./.
chr1	28268835	rs371186360	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:32:70:0.986:2	0/1:0,24:32:25:1.00:2	0/1:0,12:31:12:1.00:2	0/1:63,34:33:97:0.351:2	0/1:64,55:33:119:0.462:2	0/1:0,97:32:97:1.00:2	0/1:78,53:32:131:0.405:2	0/1:78,54:32:132:0.409:2	0/1:1,110:33:111:0.991:2	0/1:54,37:32:91:0.407:2	0/1:44,43:32:87:0.494:2
chr1	28280970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,38:31:92:0.413:2	./.	./.	./.	./.	./.
chr1	28282206	rs3813804	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,17:31:51:0.333:2	0/1:28,14:32:42:0.333:2	./.	./.	./.	0/1:36,24:30:60:0.400:2	0/1:27,33:31:60:0.550:2	0/1:38,42:30:80:0.525:2	./.	0/1:31,19:31:50:0.380:2	./.
chr1	28282292	rs3813803	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,37:32:106:0.349:2	0/1:4,98:31:102:0.961:2	./.	0/1:74,55:32:129:0.426:2	0/1:70,41:31:111:0.369:2	./.	./.	./.
chr1	28282307	rs35908659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,57:31:108:0.528:2
chr1	28290139	rs147855072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,53:31:111:0.477:2	./.	./.	./.
chr1	28293171	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:159:0.025:2	./.	./.	./.	./.	./.
chr1	28293210	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.	./.
chr1	28354323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.	./.	./.	./.
chr1	28362075	rs190278796	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,88:32:200:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr1	28476710	rs140347568	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.
chr1	28476765	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:34:96:0.042:2
chr1	28531819	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,6:31:101:0.059:2	./.	./.	./.
chr1	28536512	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.
chr1	28536526	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,6:30:84:0.071:2	./.	./.	./.	./.
chr1	28555535	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,15:32:41:0.366:2	0/1:16,13:32:29:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	28564252	rs8559	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,35:33:88:0.398:2	0/1:26,24:33:50:0.480:2	./.	0/1:43,59:32:102:0.578:2	0/1:52,38:32:90:0.422:2	0/1:0,85:32:85:1.00:2	./.	0/1:2,88:31:90:0.978:2	./.	0/1:38,27:31:65:0.415:2	./.
chr1	28564279	rs9508	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:67,40:31:107:0.374:2	0/1:32,24:29:56:0.429:2	./.	./.	0/1:48,36:29:84:0.429:2	0/1:0,86:30:86:1.00:2	./.	0/1:2,102:29:104:0.981:2	./.	0/1:44,37:29:81:0.457:2	./.
chr1	28586376	rs34315986	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	28733993	rs12091029	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,25:31:79:0.316:2	0/1:31,11:32:42:0.262:2	0/1:0,61:31:61:1.00:2	0/1:29,21:31:50:0.420:2	0/1:51,33:31:84:0.393:2	./.	0/1:44,24:32:68:0.353:2	./.
chr1	28793041	rs11539548	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,83:31:146:0.568:2	./.	0/1:102,75:32:177:0.424:2	./.	./.	./.
chr1	28793149	rs61748637	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,24:30:71:0.338:2	./.	./.
chr1	28800277	rs36099122	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,61:30:110:0.555:2	./.	0/1:71,55:30:126:0.437:2	./.	./.	./.
chr1	28800380	rs61785974	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:29:17:0.647:2	0/1:10,10:30:20:0.500:2	0/1:11,13:30:24:0.542:2	0/1:10,9:29:19:0.474:2	./.	./.	0/1:8,5:31:13:0.385:2	./.
chr1	28807009	rs377530308	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:32:110:0.418:2	./.	./.
chr1	28861636	rs2066726	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,76:29:184:0.415:2	0/1:109,86:29:195:0.441:2	0/1:73,87:29:160:0.544:2	./.	./.	./.	0/1:95,87:30:184:0.478:2	./.
chr1	28864435	rs2227977	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,59:33:145:0.407:2	./.	0/1:84,43:32:127:0.339:2	./.	./.	./.
chr1	28920855	rs115996155	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:33:21:0.619:2	0/1:10,4:32:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,20:33:28:0.714:2
chr1	28921199	rs4654341	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,58:33:118:0.492:2	0/1:71,71:32:142:0.500:2	0/1:72,76:32:148:0.514:2	./.	./.	./.	./.	./.
chr1	28921480	rs115638881	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	0/1:49,48:32:97:0.495:2	./.	./.
chr1	29041183	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:30:118:0.034:2	./.	./.	./.	./.
chr1	29064797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.
chr1	29069312	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.
chr1	29185796	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,6:33:167:0.036:2	./.	./.	./.	./.	./.	./.
chr1	29189597	rs2234918	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,27:32:43:0.628:2	0/1:9,10:31:19:0.526:2	./.	0/1:9,23:31:32:0.719:2	0/1:0,35:29:35:1.00:2	0/1:17,36:30:54:0.679:2	0/1:0,26:30:26:1.00:2	0/1:17,17:30:34:0.500:2	0/1:0,34:31:34:1.00:2	./.	./.
chr1	29320013	rs111642750	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:32:47:0.340:2	./.	./.	./.	0/1:0,80:32:80:1.00:2
chr1	29379802	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.
chr1	29387014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:157:0.025:2
chr1	29442291	rs536178	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,34:32:86:0.395:2	./.	0/1:21,32:33:53:0.604:2	./.
chr1	29447699	rs56040456	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,33:31:33:1.00:2	0/1:0,20:30:20:1.00:2	./.	./.	./.	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.	./.
chr1	29475341	rs2230678	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,23:32:63:0.365:2	0/1:30,21:32:51:0.412:2	0/1:5,6:33:11:0.545:2	0/1:1,121:32:122:0.992:2	0/1:1,113:32:114:0.991:2	0/1:0,76:32:76:1.00:2	0/1:114,62:32:176:0.352:2	0/1:0,120:31:120:1.00:2	0/1:56,52:32:108:0.481:2	0/1:0,77:32:77:1.00:2	0/1:0,77:30:77:1.00:2
chr1	29475394	rs2230677	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,13:28:52:0.250:2	0/1:29,17:29:46:0.370:2	0/1:4,5:29:9:0.556:2	0/1:1,91:29:92:0.989:2	0/1:1,74:28:75:0.987:2	0/1:0,75:30:75:1.00:2	0/1:69,48:30:117:0.410:2	0/1:0,87:29:87:1.00:2	0/1:46,37:31:83:0.446:2	0/1:0,65:31:65:1.00:2	0/1:1,61:28:62:0.984:2
chr1	29475648	rs2230679	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,49:31:49:1.00:2	0/1:2,8:32:10:0.800:2	0/1:0,82:32:82:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,77:31:77:1.00:2	0/1:21,34:30:55:0.618:2	0/1:0,82:31:82:1.00:2	0/1:51,31:32:82:0.378:2	0/1:0,64:31:64:1.00:2	0/1:0,82:31:82:1.00:2
chr1	29529699	rs1062924	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:62:1.00:2	0/1:0,40:29:40:1.00:2	0/1:8,7:30:15:0.467:2	0/1:2,87:29:89:0.978:2	0/1:1,99:29:100:0.990:2	0/1:0,77:29:77:1.00:2	0/1:50,40:29:90:0.444:2	0/1:1,75:29:76:0.987:2	0/1:44,38:31:82:0.463:2	0/1:0,66:30:67:1.00:2	0/1:0,64:29:64:1.00:2
chr1	29542637	rs1128400	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,23:32:23:1.00:2	0/1:3,5:30:8:0.625:2	0/1:0,51:31:51:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,56:31:56:1.00:2	0/1:42,24:32:66:0.364:2	0/1:1,57:32:58:0.983:2	0/1:41,32:32:73:0.438:2	0/1:0,46:32:46:1.00:2	0/1:0,47:31:47:1.00:2
chr1	29585286	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.
chr1	29587407	rs72649292	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.
chr1	29602091	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,8:20:149:0.054:2	./.
chr1	29630455	rs2295061	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,57:30:108:0.528:2	./.	0/1:65,51:30:116:0.440:2	0/1:33,46:31:79:0.582:2	0/1:36,30:31:66:0.455:2	./.
chr1	29630554	rs61733825	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.	0/1:58,48:29:106:0.453:2	./.	./.
chr1	29631909	rs2235937	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,11:32:28:0.393:2	0/1:10,7:32:17:0.412:2	./.	./.	0/1:39,27:32:67:0.409:2	0/1:27,19:32:46:0.413:2	0/1:36,37:32:73:0.507:2	0/1:50,36:33:86:0.419:2	./.	0/1:23,18:31:41:0.439:2	0/1:4,44:30:48:0.917:2
chr1	29637318	rs6671919	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,66:30:142:0.465:2	./.	./.	./.	./.	./.	./.
chr1	29639087	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:155:0.026:2	./.
chr1	29644328	rs1045453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,18:30:30:0.600:2	./.
chr1	31188089	rs1065755	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:31:20:1.00:2	0/1:77,101:31:178:0.567:2	./.	./.	0/1:86,72:31:158:0.456:2	0/1:88,96:31:184:0.522:2	0/1:76,69:32:146:0.476:2	0/1:2,143:31:145:0.986:2	./.
chr1	31188901	rs20566	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:61,31:30:92:0.337:2	./.	0/1:42,39:31:81:0.481:2	0/1:42,33:29:75:0.440:2	0/1:55,47:29:102:0.461:2	0/1:48,29:30:77:0.377:2	0/1:0,62:30:62:1.00:2	./.
chr1	31189690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:26:45:0.089:2
chr1	31208042	rs35351292	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:40,29:31:69:0.420:2	./.	./.	./.	./.	0/1:20,19:32:39:0.487:2	0/1:0,35:32:35:1.00:2	./.
chr1	31215364	rs1050663	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:30:10:0.400:2	0/1:0,127:29:127:1.00:2	0/1:73,54:30:127:0.425:2	0/1:0,99:30:99:1.00:2	0/1:0,133:30:133:1.00:2	0/1:68,58:30:126:0.460:2	0/1:2,95:31:97:0.979:2	0/1:0,70:29:70:1.00:2	0/1:49,29:30:78:0.372:2
chr1	31346199	rs1539360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,40:29:66:0.606:2	./.	0/1:37,36:29:73:0.493:2	./.	./.	0/1:22,24:26:47:0.522:2
chr1	31347399	rs4949184	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:37,27:30:64:0.422:2	0/1:46,31:31:77:0.403:2	0/1:33,28:31:61:0.459:2	0/1:30,28:32:58:0.483:2	./.	./.	0/1:25,37:30:62:0.597:2	./.
chr1	31349642	rs41269521	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	./.	0/1:11,30:30:41:0.732:2	./.	./.	0/1:9,8:30:17:0.471:2
chr1	31349647	rs2491132	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:31:39:0.462:2	0/1:11,30:31:41:0.732:2	0/1:12,33:30:45:0.733:2	./.	0/1:11,15:31:26:0.577:2	0/1:11,9:29:20:0.450:2
chr1	31351513	rs1891419	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,40:32:77:0.519:2	./.	0/1:49,31:32:80:0.388:2	0/1:49,53:32:102:0.520:2	./.	0/1:55,44:33:99:0.444:2	0/1:24,26:32:50:0.520:2	./.
chr1	31423077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	31426815	rs2275741	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:29:8:1.00:2	0/1:24,25:31:49:0.510:2	0/1:43,37:30:80:0.463:2	0/1:2,66:29:68:0.971:2	0/1:47,42:29:89:0.472:2	./.	0/1:49,30:29:79:0.380:2	./.	./.
chr1	31658130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.
chr1	31660926	rs142100553	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,54:31:139:0.388:2	./.	./.	./.	./.	./.
chr1	31732892	rs2292165	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,23:33:52:0.451:2	./.	./.	./.	./.	./.	./.	./.
chr1	31740706	rs3753373	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:30:50:0.480:2	./.	0/1:20,24:31:44:0.545:2	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.
chr1	31842320	rs2228194	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,91:33:195:0.467:2	0/1:98,83:33:181:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	31883295	rs6701521	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:32:16:0.375:2	0/1:0,132:32:132:1.00:2	./.	0/1:80,70:32:151:0.467:2	0/1:90,65:32:155:0.419:2	0/1:2,175:31:177:0.989:2	./.	./.	./.
chr1	31897643	rs2275437	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,77:30:128:0.602:2	0/1:72,89:30:161:0.553:2	./.	./.	./.
chr1	31898234	rs4949402	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,125:32:126:0.992:2	0/1:0,84:32:84:1.00:2	0/1:8,13:33:21:0.619:2	./.	0/1:1,129:32:130:0.992:2	0/1:84,68:33:152:0.447:2	0/1:92,67:33:159:0.421:2	./.	0/1:0,152:34:152:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,145:32:145:1.00:2
chr1	31898639	rs35976845	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,81:30:183:0.443:2	./.	./.	./.	0/1:0,129:30:129:1.00:2	0/1:57,52:30:109:0.477:2
chr1	31898687	rs2275434	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:33:113:0.354:2	./.	./.
chr1	31902279	rs34728687	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	31905883	rs201239431	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,7:32:80:0.088:2	./.	./.
chr1	32044832	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.
chr1	32084904	rs1056526	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,45:31:106:0.425:2	0/1:35,30:31:65:0.462:2	0/1:8,9:31:17:0.529:2	./.	0/1:111,82:30:193:0.425:2	0/1:72,55:30:128:0.433:2	./.	0/1:2,163:31:165:0.988:2	0/1:74,83:31:157:0.529:2	0/1:52,59:31:111:0.532:2	0/1:1,112:31:113:0.991:2
chr1	32092525	rs2271933	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,12:31:29:0.414:2	0/1:10,18:30:28:0.643:2	0/1:6,7:30:13:0.538:2	./.	0/1:18,23:31:41:0.561:2	0/1:37,19:29:56:0.339:2	./.	0/1:0,58:30:58:1.00:2	0/1:20,24:32:44:0.545:2	0/1:20,11:29:31:0.355:2	0/1:0,39:30:39:1.00:2
chr1	32096265	rs1061770	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,25:33:58:0.431:2	0/1:17,17:32:34:0.500:2	./.	./.	0/1:74,70:32:144:0.486:2	0/1:53,34:31:87:0.391:2	./.	0/1:7,86:33:93:0.925:2	0/1:51,48:31:99:0.485:2	0/1:36,37:33:73:0.507:2	0/1:0,67:33:67:1.00:2
chr1	32127911	rs2271927	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,24:32:42:0.571:2	0/1:10,15:32:25:0.600:2	0/1:3,7:31:10:0.700:2	0/1:0,78:32:78:1.00:2	0/1:20,34:32:54:0.630:2	0/1:15,37:31:52:0.712:2	0/1:0,72:31:72:1.00:2	0/1:49,3:33:52:0.058:2	0/1:11,26:31:37:0.703:2	0/1:14,23:32:37:0.622:2	./.
chr1	32127953	rs2271928	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,30:31:60:0.500:2	0/1:11,25:32:36:0.694:2	0/1:8,7:31:15:0.467:2	0/1:1,113:31:114:0.991:2	0/1:39,51:30:90:0.567:2	0/1:45,52:31:97:0.536:2	0/1:0,112:31:112:1.00:2	./.	0/1:37,45:32:82:0.549:2	0/1:27,40:32:67:0.597:2	./.
chr1	32131163	rs1356803	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,21:32:43:0.488:2	0/1:11,13:32:24:0.542:2	./.	./.	0/1:33,27:32:60:0.450:2	0/1:31,41:32:72:0.569:2	./.	0/1:0,52:32:52:1.00:2	0/1:31,23:33:54:0.426:2	0/1:27,19:32:46:0.413:2	0/1:0,54:31:54:1.00:2
chr1	32138045	rs2228553	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,30:32:59:0.508:2	./.	./.	./.	./.	./.	./.
chr1	32148555	rs202008728	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:30:62:0.581:2	0/1:18,12:30:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32148571	rs10737358	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,82:30:82:1.00:2
chr1	32149773	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:31:20:0.700:2	./.	./.	./.
chr1	32150411	rs78189411	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:30:15:0.600:2	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32151299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,23:31:168:0.137:2	./.
chr1	32154060	rs373299517	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.
chr1	32158374	rs3818788	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,36:28:77:0.468:2	0/1:29,26:29:55:0.473:2	0/1:0,8:30:8:1.00:2	0/1:0,72:29:72:1.00:2	0/1:1,64:30:65:0.985:2	0/1:59,43:30:103:0.422:2	./.	0/1:39,39:29:78:0.500:2	0/1:0,101:30:101:1.00:2	0/1:29,31:30:60:0.517:2	./.
chr1	32159716	rs41303411	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,33:31:85:0.388:2
chr1	32161754	rs200800666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.
chr1	32162812	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:28:77:0.065:2	./.	./.	./.	./.	./.
chr1	32163647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.
chr1	32164206	rs2228550	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,19:31:34:0.559:2	0/1:8,10:31:18:0.556:2	0/1:0,5:31:5:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,23:30:23:1.00:2	./.	./.	0/1:12,16:31:28:0.571:2	0/1:0,35:31:35:1.00:2	0/1:15,13:31:28:0.464:2	./.
chr1	32165495	rs2228552	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,58:32:129:0.450:2	0/1:46,36:32:82:0.439:2	./.	0/1:0,156:32:156:1.00:2	0/1:5,125:32:130:0.962:2	./.	./.	0/1:106,91:32:197:0.462:2	0/1:1,152:32:153:0.993:2	0/1:81,44:32:125:0.352:2	./.
chr1	32193647	rs1127100	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,4:29:10:0.400:2	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	./.	0/1:7,4:30:11:0.364:2	0/1:0,2:31:2:1.00:2	0/1:6,3:31:9:0.333:2	./.
chr1	32196889	rs10914473	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,56:31:117:0.479:2	0/1:44,33:30:77:0.429:2	./.	0/1:75,76:31:151:0.503:2	./.	./.	./.	./.	./.	./.	./.
chr1	32221802	rs147586249	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,14:31:24:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr1	32259791	rs34341430	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,86:31:188:0.457:2	./.	./.	./.	./.	./.	./.
chr1	32264223	rs201900130	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:31:30:0.533:2	./.	./.	./.	./.	./.
chr1	32279629	rs6669563	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,21:33:65:0.323:2	0/1:22,14:32:36:0.389:2	0/1:2,3:32:5:0.600:2	./.	0/1:37,37:31:74:0.500:2	./.	0/1:0,73:32:73:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,68:33:68:1.00:2	0/1:37,26:33:63:0.413:2	0/1:0,93:32:94:1.00:2
chr1	32280369	rs35533335	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32280610	rs6664445	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,14:32:40:0.350:2	0/1:10,20:32:30:0.667:2	./.	./.	0/1:21,10:32:32:0.323:2	0/1:0,47:32:47:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,31:34:31:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,33:32:33:1.00:2
chr1	32381501	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr1	32381566	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:30:104:0.058:2	./.	./.	./.
chr1	32495999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.
chr1	32557486	rs744455	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,75:29:125:0.610:2	./.	./.
chr1	32636462	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:29:68:0.059:2
chr1	32669645	rs41263993	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:32:37:0.568:2	./.	./.	./.	./.	./.
chr1	32672908	rs3903683	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,44:32:103:0.427:2	./.	./.
chr1	32672932	rs12032332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,11:29:14:0.786:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32674724	rs139959094	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,36:31:86:0.419:2
chr1	32682781	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:32:89:0.461:2	./.	./.	./.
chr1	32686757	rs183590772	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,48:31:91:0.527:2	./.	./.	./.	./.	./.	./.
chr1	32694819	rs72666792	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,34:33:75:0.453:2	./.	./.
chr1	32713199	rs2291063	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,57:33:106:0.538:2	./.	./.
chr1	32741635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.
chr1	32745560	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,5:28:152:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	32829350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,5:32:66:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32829704	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,88:32:174:0.506:2	./.	./.	./.	./.	./.
chr1	32843890	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.
chr1	32849437	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:138:0.029:2	./.	./.	./.	./.	./.
chr1	33059062	rs190749106	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:30:23:0.391:2	./.	./.	./.	./.	./.	./.
chr1	33065947	rs704886	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,102:34:102:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,77:34:77:1.00:2
chr1	33099285	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.
chr1	33099294	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.
chr1	33099637	rs704878	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:31:122:0.041:2	./.	0/1:57,37:31:94:0.394:2
chr1	33117612	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	33133968	rs2762904	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,132:33:132:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,132:33:133:1.00:2	0/1:1,134:34:135:0.993:2	0/1:0,144:33:144:1.00:2	0/1:0,114:33:114:1.00:2
chr1	33134653	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:31:187:0.032:2	./.	./.	./.
chr1	33134683	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:190:0.032:2	./.	./.	./.
chr1	33134915	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:31:177:0.023:2	./.	./.	./.
chr1	33135126	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,6:31:149:0.040:2	./.	./.	./.
chr1	33135128	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:30:152:0.039:2	./.	./.	./.
chr1	33160644	rs3795424	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:30:53:0.491:2
chr1	33160878	rs360042	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:32:52:0.981:2	0/1:0,34:32:34:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,72:32:72:1.00:2	0/1:2,91:32:93:0.978:2	0/1:1,83:32:84:0.988:2	0/1:0,79:33:79:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,69:33:69:1.00:2	0/1:43,32:33:75:0.427:2
chr1	33161212	rs360041	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,154:30:154:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,164:30:164:1.00:2	0/1:0,186:30:186:1.00:2	0/1:1,179:31:180:0.994:2	0/1:0,141:30:141:1.00:2	0/1:87,102:30:189:0.540:2
chr1	33161264	rs74519835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,86:33:192:0.450:2
chr1	33231380	rs6694085	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,15:31:25:0.600:2	0/1:11,6:30:17:0.353:2	./.	0/1:20,9:29:29:0.310:2	./.	./.	./.	0/1:21,24:31:45:0.533:2	./.	0/1:10,28:30:38:0.737:2	./.
chr1	33231403	rs6702519	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,21:32:31:0.677:2	0/1:9,5:24:14:0.357:2	./.	0/1:21,10:31:31:0.323:2	./.	./.	./.	0/1:20,18:32:38:0.474:2	./.	0/1:15,25:32:40:0.625:2	./.
chr1	33235626	rs3737995	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,19:32:34:0.559:2	0/1:2,6:32:8:0.750:2	./.	0/1:14,17:32:31:0.548:2	0/1:0,42:32:42:1.00:2	./.	0/1:16,29:32:45:0.644:2	0/1:29,24:32:53:0.453:2	./.	0/1:21,13:32:34:0.382:2	0/1:2,6:29:8:0.750:2
chr1	33235651	rs12730560	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:27:23:0.348:2
chr1	33235789	rs41306613	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:29:60:0.483:2	./.	./.	./.	./.
chr1	33245802	rs699005	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:29:50:0.460:2
chr1	33282775	rs72654020	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:30:39:0.487:2
chr1	33292189	rs41265867	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,17:31:22:0.773:2	./.	./.
chr1	33354854	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2
chr1	33366797	rs147041320	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:25:32:0.125:2	./.
chr1	33402515	rs35462688	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:29:84:0.429:2	./.	./.	./.	./.	./.
chr1	33402542	rs35756506	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,40:27:102:0.392:2	./.	./.	./.	./.	./.
chr1	33407947	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.
chr1	33409693	rs194645	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,33:30:83:0.398:2	0/1:35,17:30:52:0.327:2	./.	0/1:47,37:31:84:0.440:2	./.	./.	./.	0/1:76,31:30:107:0.290:2	./.	0/1:30,27:31:57:0.474:2	./.
chr1	33478848	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.
chr1	33502343	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,5:32:40:0.125:2	./.	./.	0/1:61,5:27:66:0.076:2	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.
chr1	33502357	rs199641857	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,7:32:43:0.163:2	./.	./.	0/1:63,10:32:74:0.137:2	./.	./.	./.	0/1:83,6:32:89:0.067:2	./.	0/1:64,4:32:68:0.059:2
chr1	33502376	rs76061645	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,11:31:48:0.229:2	./.	./.	0/1:91,22:32:113:0.195:2	./.	./.	./.	0/1:87,11:31:98:0.112:2	./.	0/1:65,11:32:76:0.145:2
chr1	33560210	rs140229682	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,40:31:87:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr1	33583621	rs199536379	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:22:14:0.357:2	0/1:108,15:15:124:0.122:2	0/1:103,17:17:120:0.142:2	./.	0/1:110,21:15:131:0.160:2	0/1:107,11:15:118:0.093:2	0/1:93,12:13:105:0.114:2	0/1:79,11:20:90:0.122:2	./.
chr1	33625430	rs202226050	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.	./.	./.	./.	./.
chr1	33631069	rs2306257	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:29:11:0.636:2	0/1:2,84:28:86:0.977:2	./.	./.	./.	0/1:46,42:29:88:0.477:2	./.	0/1:34,15:30:49:0.306:2	0/1:14,16:31:30:0.533:2
chr1	33646950	rs622407	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,9:30:9:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,26:31:26:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,11:32:11:1.00:2	0/1:15,7:30:22:0.318:2	0/1:0,10:31:10:1.00:2	0/1:0,6:31:6:1.00:2	./.
chr1	33747327	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	33764617	rs55887741	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:32:26:0.500:2	./.
chr1	33772792	rs113218677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,17:32:22:0.773:2	./.
chr1	33790496	rs11554674	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,18:32:47:0.383:2	0/1:16,9:32:25:0.360:2	0/1:9,7:32:16:0.438:2	0/1:32,36:31:68:0.529:2	./.	0/1:1,51:31:52:0.981:2	./.	0/1:1,81:32:82:0.988:2	./.	0/1:23,32:32:55:0.582:2	0/1:39,25:31:64:0.391:2
chr1	33794493	rs150064930	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,12:31:44:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr1	33820033	rs16835408	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:32:65:0.446:2	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	33820134	rs12026290	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,21:32:38:0.553:2	0/1:14,16:32:30:0.533:2	0/1:3,3:31:6:0.500:2	0/1:40,23:32:63:0.365:2	./.	0/1:0,63:31:63:1.00:2	./.	0/1:2,87:31:89:0.978:2	./.	0/1:30,19:32:49:0.388:2	0/1:19,22:32:41:0.537:2
chr1	33832792	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.
chr1	33832865	rs6425816	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:30:74:1.00:2	0/1:0,46:30:46:1.00:2	0/1:15,8:31:23:0.348:2	0/1:1,103:31:104:0.990:2	./.	0/1:0,104:30:104:1.00:2	./.	0/1:0,119:31:119:1.00:2	./.	0/1:0,81:31:81:1.00:2	0/1:45,38:30:83:0.458:2
chr1	33832919	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,8:27:62:0.129:2	./.	./.	./.	./.	./.	./.
chr1	33832933	rs10914692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,35:29:58:0.603:2	./.	./.	./.	./.	./.	./.	./.
chr1	33945192	rs16835507	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:31:77:0.416:2	./.	./.	0/1:51,42:32:93:0.452:2	./.	./.
chr1	33957130	rs3795419	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:32:30:0.567:2	0/1:9,15:32:24:0.625:2	./.	./.	0/1:26,22:31:48:0.458:2	./.	./.	./.	0/1:29,21:33:50:0.420:2	./.	0/1:25,32:32:57:0.561:2
chr1	33957152	rs4403594	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,65:32:65:1.00:2	0/1:1,60:32:61:0.984:2	./.	0/1:0,62:34:62:1.00:2	0/1:0,48:33:48:1.00:2	0/1:1,72:32:73:0.986:2
chr1	33958929	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.
chr1	33960062	rs9943259	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:30:55:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:39,28:31:67:0.418:2	0/1:53,36:29:89:0.404:2	0/1:30,40:30:70:0.571:2	0/1:0,88:30:88:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,84:30:84:1.00:2	0/1:65,34:30:99:0.343:2
chr1	33960133	rs201589778	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,17:32:50:0.340:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	34038214	rs2641962	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,44:28:77:0.571:2	0/1:19,13:28:32:0.406:2	0/1:3,5:27:8:0.625:2	0/1:39,49:29:88:0.557:2	./.	0/1:0,100:28:100:1.00:2	0/1:93,59:27:152:0.388:2	./.	0/1:67,52:31:119:0.437:2	0/1:0,71:27:71:1.00:2	0/1:0,60:28:60:1.00:2
chr1	34046403	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.
chr1	34070973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	34071525	rs1874045	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,27:30:47:0.574:2	0/1:16,11:32:27:0.407:2	./.	0/1:0,37:30:37:1.00:2	0/1:28,5:30:33:0.152:2	0/1:0,48:31:48:1.00:2	0/1:17,12:29:29:0.414:2	0/1:24,17:31:41:0.415:2	0/1:1,45:31:46:0.978:2	./.	0/1:0,39:31:39:1.00:2
chr1	34090679	rs16835683	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:86,72:32:158:0.456:2	0/1:28,42:31:70:0.600:2	./.	./.	./.	./.	./.	0/1:89,98:32:187:0.524:2	./.	./.	./.
chr1	34166210	rs146082635	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,62:33:127:0.488:2	./.	./.	./.
chr1	34191002	rs35719666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:31:130:0.423:2	./.	./.	./.	./.	./.
chr1	34238283	rs474474	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,12:27:48:0.250:2	0/1:19,22:29:41:0.537:2	./.	0/1:40,61:28:101:0.604:2	0/1:2,74:28:76:0.974:2	./.	./.	./.	./.	./.	./.
chr1	34270498	rs10737374	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,52:29:133:0.391:2	0/1:38,53:30:91:0.582:2	0/1:0,21:29:21:1.00:2	0/1:79,54:28:133:0.406:2	0/1:0,105:28:105:1.00:2	0/1:70,62:29:132:0.470:2	0/1:0,106:30:106:1.00:2	./.	0/1:0,118:30:118:1.00:2	0/1:77,53:29:130:0.408:2	0/1:72,72:30:145:0.500:2
chr1	34285342	rs17342512	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,49:32:102:0.480:2	0/1:32,30:32:62:0.484:2	0/1:0,17:32:17:1.00:2	0/1:83,54:31:137:0.394:2	0/1:0,188:31:188:1.00:2	0/1:99,56:32:155:0.361:2	0/1:2,173:32:175:0.989:2	./.	0/1:102,60:32:164:0.370:2	0/1:57,53:32:110:0.482:2	0/1:48,57:31:105:0.543:2
chr1	34285381	rs11578857	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,77:32:143:0.538:2	0/1:40,36:31:76:0.474:2	0/1:0,17:31:17:1.00:2	0/1:101,69:32:170:0.406:2	0/1:1,178:31:179:0.994:2	0/1:116,78:31:194:0.402:2	0/1:1,183:31:184:0.995:2	./.	0/1:113,74:32:187:0.396:2	0/1:66,64:31:130:0.492:2	0/1:50,55:31:105:0.524:2
chr1	34329897	rs911218	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:29:51:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,40:29:40:1.00:2	0/1:1,66:29:67:0.985:2
chr1	34330067	rs10379	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,22:31:46:0.478:2	0/1:14,9:32:23:0.391:2	0/1:0,3:29:3:1.00:2	0/1:18,28:31:46:0.609:2	0/1:1,33:31:34:0.971:2	0/1:23,18:29:41:0.439:2	0/1:0,24:31:24:1.00:2	./.	0/1:0,43:32:43:1.00:2	0/1:16,16:28:32:0.500:2	0/1:18,28:30:46:0.609:2
chr1	34383844	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.	./.	./.	./.	./.
chr1	34663180	rs3795412	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	0/1:37,20:31:57:0.351:2	./.	./.	./.	./.	0/1:21,32:32:53:0.604:2
chr1	34663208	rs1382602	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:32:51:1.00:2	./.	0/1:0,53:32:53:1.00:2	0/1:34,25:32:59:0.424:2	./.	./.	0/1:30,28:33:58:0.483:2	0/1:19,26:32:45:0.578:2
chr1	34663411	rs1414474	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,53:32:101:0.525:2	./.	0/1:43,41:32:84:0.488:2	0/1:26,49:33:75:0.653:2	./.	./.	0/1:33,22:32:55:0.400:2	0/1:38,23:32:61:0.377:2
chr1	34667736	rs139397885	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,96:32:177:0.542:2	./.	./.
chr1	34667784	rs80015626	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,9:21:73:0.123:2	./.	0/1:12,4:21:16:0.250:2	0/1:116,20:15:136:0.147:2	0/1:117,33:15:150:0.220:2	0/1:114,27:19:141:0.191:2	0/1:118,27:15:145:0.186:2	0/1:117,22:17:139:0.158:2	0/1:131,19:15:150:0.127:2	0/1:94,18:17:112:0.161:2	0/1:81,21:20:102:0.206:2
chr1	34673845	rs114229205	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,47:30:91:0.516:2	./.	./.	./.	./.	./.
chr1	34677815	rs61741807	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:29:109:0.459:2	./.	./.	./.	./.	./.
chr1	35135270	rs76067517	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,33:32:94:0.351:2	./.	./.	./.	./.	./.
chr1	35222993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.
chr1	35223345	rs3738345	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,29:30:57:0.509:2	0/1:27,23:32:50:0.460:2	./.	./.	./.	0/1:52,52:32:104:0.500:2	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.
chr1	35223881	rs1061349	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:29:35:0.371:2	0/1:11,15:30:28:0.577:2	./.	./.	./.	0/1:35,40:29:76:0.533:2	./.	./.	./.	./.	./.
chr1	35223913	rs28695349	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:29:65:0.462:2	./.	./.	./.	./.
chr1	35227162	rs9426009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,50:29:99:0.505:2	./.	./.	./.	./.	./.	./.
chr1	35227207	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,40:31:76:0.526:2	./.
chr1	35227362	rs79193415	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,22:33:46:0.478:2	./.	./.	./.	0/1:22,26:33:48:0.542:2	./.	./.	./.
chr1	35227630	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,7:30:49:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	35227673	rs755931	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,41:31:86:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr1	35228604	rs1985283	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,16:33:24:0.667:2	0/1:8,10:32:18:0.556:2	0/1:2,2:33:4:0.500:2	0/1:13,18:31:31:0.581:2	./.	0/1:20,15:31:35:0.429:2	./.	0/1:19,21:32:40:0.525:2	0/1:12,10:33:22:0.455:2	./.	./.
chr1	35228693	rs1123974	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,24:31:53:0.453:2	./.	./.	./.	./.	0/1:22,20:32:42:0.476:2	./.	./.
chr1	35228765	rs75361521	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,27:31:81:0.333:2	./.	0/1:70,44:31:114:0.386:2	./.	./.	./.
chr1	35229142	rs78592202	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,60:31:153:0.392:2	./.	0/1:96,77:31:174:0.445:2	./.	./.	./.
chr1	35229259	rs7549597	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:31:56:0.500:2	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	35251075	rs200004121	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,7:17:51:0.137:2
chr1	35251161	rs35983826	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:31:76:0.408:2	./.	./.	./.	./.	./.
chr1	35251219	rs41266429	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,33:32:73:0.452:2	0/1:27,20:32:47:0.426:2	0/1:4,3:32:7:0.429:2	0/1:42,35:31:77:0.455:2	0/1:42,33:31:75:0.440:2	./.	./.	./.	./.	./.	./.
chr1	35251229	rs476220	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,29:33:70:0.414:2	0/1:27,16:33:43:0.372:2	0/1:0,10:32:10:1.00:2	0/1:41,34:32:75:0.453:2	0/1:0,75:32:75:1.00:2	0/1:53,48:32:101:0.475:2	0/1:46,54:32:100:0.540:2	./.	0/1:59,43:32:102:0.422:2	./.	./.
chr1	35251545	rs2236214	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	0/1:17,20:30:37:0.541:2	./.	./.	./.	0/1:22,23:32:45:0.511:2	./.
chr1	35251669	rs13774	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,11:32:27:0.407:2	0/1:14,7:32:21:0.333:2	0/1:2,4:29:6:0.667:2	0/1:23,15:31:38:0.395:2	0/1:16,16:32:32:0.500:2	./.	./.	./.	./.	./.	./.
chr1	35251735	rs9118	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,34:33:69:0.493:2	./.	0/1:17,12:32:29:0.414:2	./.	./.	./.	0/1:16,17:32:33:0.515:2	./.
chr1	35259946	rs1764389	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,12:30:27:0.444:2	./.	0/1:86,90:29:176:0.511:2	./.	0/1:108,90:30:198:0.455:2	./.	0/1:80,79:31:159:0.497:2	0/1:57,89:30:147:0.610:2	./.
chr1	35259961	rs1764390	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,42:33:86:0.488:2	0/1:40,23:31:63:0.365:2	0/1:0,22:31:22:1.00:2	0/1:1,134:32:135:0.993:2	0/1:0,182:32:182:1.00:2	0/1:0,147:31:147:1.00:2	0/1:105,88:32:193:0.456:2	./.	0/1:78,69:33:147:0.469:2	0/1:53,81:32:134:0.604:2	./.
chr1	35260202	rs41266431	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,5:30:13:0.417:2	0/1:6,6:31:12:0.500:2	./.	0/1:9,4:31:13:0.308:2	0/1:7,10:31:17:0.588:2	./.	./.	./.	./.	./.	./.
chr1	35260769	rs1764391	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,12:27:19:0.632:2	0/1:12,8:30:20:0.400:2	0/1:13,8:29:21:0.381:2	./.	0/1:9,8:31:18:0.471:2	0/1:13,7:27:20:0.350:2	./.
chr1	35260929	rs3543	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,44:32:89:0.494:2	0/1:23,28:30:51:0.549:2	0/1:0,8:32:8:1.00:2	0/1:0,85:31:85:1.00:2	0/1:3,97:31:100:0.970:2	0/1:0,89:31:89:1.00:2	0/1:75,62:31:137:0.453:2	./.	0/1:69,59:33:128:0.461:2	0/1:39,38:32:77:0.494:2	./.
chr1	35261166	rs697372	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,31:31:102:0.304:2	./.	0/1:67,47:31:114:0.412:2	./.	0/1:35,46:32:81:0.568:2	0/1:36,34:32:70:0.486:2	./.
chr1	35261232	rs705193	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,36:32:69:0.522:2	0/1:34,21:32:55:0.382:2	0/1:7,7:32:14:0.500:2	0/1:1,89:33:90:0.989:2	0/1:37,53:32:90:0.589:2	0/1:46,39:32:85:0.459:2	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.
chr1	35454115	rs61745582	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,46:31:102:0.451:2	./.	./.	./.	./.	./.
chr1	35478138	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.
chr1	35562965	rs2971408	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,84:31:84:1.00:2	0/1:41,30:32:71:0.423:2	0/1:42,40:31:82:0.488:2	0/1:0,53:32:53:1.00:2	0/1:2,67:32:69:0.971:2	0/1:0,71:32:71:1.00:2	0/1:0,56:32:56:1.00:2	0/1:1,86:32:87:0.989:2
chr1	35658492	rs76077726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:29:19:0.526:2	./.	./.	./.	./.	./.
chr1	35658546	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	./.	./.
chr1	35857938	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	35864571	rs12040345	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:32:99:0.455:2	./.	./.	./.	./.	./.
chr1	35900615	rs3814302	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,61:29:136:0.452:2	0/1:42,44:29:86:0.512:2	./.	./.	./.	0/1:80,75:29:155:0.484:2	./.	0/1:191,5:28:197:0.026:2	./.	./.	./.
chr1	35909782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.
chr1	35928299	rs190551485	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36020029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36023810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.
chr1	36031117	rs55743884	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:32:13:0.538:2
chr1	36202585	rs35490896	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,38:30:82:0.463:2	0/1:40,32:30:72:0.444:2	./.	./.	./.	./.	./.
chr1	36203016	rs55647365	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:32:26:0.269:2	./.	./.	./.
chr1	36209093	rs200963718	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.
chr1	36215330	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.	./.
chr1	36225948	rs7537203	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,36:33:73:0.493:2	0/1:27,32:32:59:0.542:2	./.	./.	0/1:35,21:32:56:0.375:2	0/1:0,63:33:63:1.00:2	./.	./.	./.	./.	./.
chr1	36235455	rs61751002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:30:17:0.647:2	./.	./.	./.	./.	./.
chr1	36316571	rs4652895	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,38:29:101:0.376:2	0/1:29,26:29:55:0.473:2	0/1:0,10:31:10:1.00:2	0/1:1,96:30:97:0.990:2	0/1:90,65:28:155:0.419:2	./.	0/1:1,138:29:139:0.993:2	0/1:1,128:29:129:0.992:2	0/1:0,124:30:124:1.00:2	0/1:0,86:30:86:1.00:2	0/1:2,117:29:119:0.983:2
chr1	36380971	rs72661618	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,22:12:137:0.161:2	0/1:124,21:10:145:0.145:2	0/1:115,21:13:136:0.154:2	0/1:130,18:11:148:0.122:2	0/1:112,21:14:133:0.158:2	0/1:114,15:13:130:0.116:2	./.	0/1:83,11:17:95:0.117:2
chr1	36381038	rs148568098	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,64:30:148:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr1	36474538	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,14:32:69:0.203:2	./.	./.	./.	./.	./.	./.
chr1	36521341	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:34:73:0.055:2	./.
chr1	36550658	rs12043423	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,53:32:105:0.505:2	./.	./.	./.	./.	./.
chr1	36552447	rs35654839	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,49:31:83:0.590:2	./.	./.	./.	./.	./.
chr1	36553673	rs399393	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,57:29:126:0.452:2	0/1:28,20:29:48:0.417:2	0/1:0,16:30:16:1.00:2	0/1:0,141:29:141:1.00:2	0/1:118,74:29:192:0.385:2	0/1:0,133:29:133:1.00:2	0/1:3,176:29:179:0.983:2	0/1:2,164:29:166:0.988:2	0/1:0,123:30:123:1.00:2	0/1:0,97:29:98:1.00:2	0/1:65,30:28:95:0.316:2
chr1	36556867	rs768000	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:30:31:0.419:2	./.	./.	./.	./.	./.
chr1	36563524	rs35841184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,26:32:52:0.500:2	./.	./.	./.	./.	./.	./.
chr1	36563959	rs182708720	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:29:38:0.342:2	./.	./.	./.	./.	./.
chr1	36565837	rs115156902	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36603770	rs114981457	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:32:44:0.545:2	./.	./.	./.	./.	./.
chr1	36642420	rs475591	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:27:2:1.00:2	0/1:0,11:27:11:1.00:2	./.	0/1:3,7:29:10:0.700:2	./.	0/1:0,4:23:4:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.
chr1	36643685	rs12563354	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:31:67:0.537:2	./.	./.	./.	./.	./.
chr1	36643783	rs12563364	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:29:8:0.875:2	./.	./.	./.	./.	./.
chr1	36644557	rs111556626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,108:32:188:0.574:2	./.	./.	./.	./.	./.
chr1	36645811	rs41267273	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:83,49:30:132:0.371:2	0/1:30,26:29:56:0.464:2	./.	./.	0/1:58,42:29:100:0.420:2	./.	./.	./.	./.	0/1:66,67:29:133:0.504:2	./.
chr1	36752152	rs2242428	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,32:30:61:0.525:2	./.	0/1:52,43:30:95:0.453:2	0/1:55,21:31:76:0.276:2	0/1:53,28:31:81:0.346:2	0/1:48,52:32:100:0.520:2	./.	./.
chr1	36752433	rs6425977	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,67:31:67:1.00:2	./.	0/1:0,96:30:96:1.00:2	0/1:0,69:31:69:1.00:2	0/1:43,63:31:106:0.594:2	0/1:1,98:32:99:0.990:2	./.	0/1:58,30:29:88:0.341:2
chr1	36773405	rs35343437	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:30:95:1.00:2	0/1:2,51:29:53:0.962:2	0/1:9,5:28:14:0.357:2	0/1:99,61:30:160:0.381:2	./.	./.	0/1:62,50:30:112:0.446:2	./.	0/1:73,53:31:126:0.421:2	./.	0/1:68,40:28:108:0.370:2
chr1	36773761	rs76695875	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:31:25:0.600:2	0/1:13,13:28:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36807481	rs3795498	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,59:28:104:0.584:2	0/1:27,39:29:66:0.591:2	0/1:7,7:30:14:0.500:2	0/1:53,63:28:116:0.543:2	./.	./.	0/1:78,65:27:143:0.455:2	./.	0/1:50,65:29:115:0.565:2	./.	0/1:53,34:28:87:0.391:2
chr1	36820927	rs11263875	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,183:31:189:0.968:2	./.	./.	0/1:104,90:32:195:0.464:2	./.	0/1:79,82:32:162:0.509:2	0/1:89,58:32:147:0.395:2
chr1	36886117	rs2275477	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,64:32:65:0.985:2	0/1:0,35:33:35:1.00:2	./.	0/1:35,23:32:58:0.397:2	./.	./.	./.	0/1:26,34:32:60:0.567:2	./.	./.	./.
chr1	36887813	rs17442970	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:32:30:0.567:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36888462	rs1416840	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,57:31:121:0.471:2	./.	./.	./.	./.	0/1:81,62:31:143:0.434:2
chr1	36889005	rs16822954	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:31:58:0.483:2
chr1	36893968	rs61308377	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:33:46:0.391:2
chr1	36898067	rs34409118	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,99:33:101:0.980:2	0/1:2,63:32:65:0.969:2	./.	0/1:74,51:32:125:0.408:2	./.	./.	./.	0/1:107,72:32:179:0.402:2	./.	./.	./.
chr1	36927733	rs7065	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,132:33:133:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,151:33:152:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,171:33:172:1.00:2
chr1	36937059	rs3917981	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,15:30:15:1.00:2	./.	0/1:22,28:31:50:0.560:2	0/1:0,36:32:36:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:2,27:32:29:0.931:2	0/1:23,19:33:42:0.452:2	0/1:0,18:31:18:1.00:2	0/1:13,16:32:29:0.552:2
chr1	36937065	rs3917980	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,11:33:30:0.367:2	0/1:6,11:33:17:0.647:2	./.	./.	0/1:24,22:33:46:0.478:2	./.	0/1:1,24:32:25:0.960:2	0/1:21,11:33:32:0.344:2	0/1:25,18:34:43:0.419:2	0/1:0,20:30:20:1.00:2	0/1:16,19:30:35:0.543:2
chr1	36938235	rs3918017	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,45:31:76:0.592:2	0/1:25,30:31:55:0.545:2	./.	0/1:38,62:31:100:0.620:2	0/1:47,57:31:104:0.548:2	./.	./.	./.	./.	./.	./.
chr1	36939484	rs201313973	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:116,10:17:126:0.079:2	./.	./.	0/1:112,10:16:123:0.082:2	./.	0/1:125,11:18:136:0.081:2	./.	./.	./.	0/1:110,13:14:123:0.106:2	./.
chr1	37285454	rs199790296	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,9:17:85:0.107:2	./.	./.	./.	./.	./.	./.	0/1:57,7:20:64:0.109:2
chr1	37319270	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,9:28:50:0.180:2	./.	./.	0/1:58,12:28:70:0.171:2	0/1:37,11:28:48:0.229:2	0/1:49,14:27:63:0.222:2	0/1:46,14:28:60:0.233:2	0/1:71,14:29:85:0.165:2	0/1:44,5:30:49:0.102:2	0/1:39,12:29:51:0.235:2	0/1:39,12:29:51:0.235:2
chr1	37325477	rs6691840	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:19,11:32:30:0.367:2	./.	./.	./.	0/1:34,19:32:53:0.358:2	0/1:40,22:32:62:0.355:2	0/1:41,26:32:67:0.388:2	0/1:36,24:33:60:0.400:2	./.	./.
chr1	37948912	rs41267299	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:32:12:0.333:2	0/1:53,37:31:90:0.411:2	./.	./.	./.	0/1:54,51:32:105:0.486:2	0/1:40,38:33:78:0.487:2	./.	./.
chr1	38006200	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,54:30:121:0.446:2	./.	./.	./.	./.	./.
chr1	38019747	rs2273013	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,7:32:19:0.368:2	0/1:6,12:32:18:0.667:2	0/1:2,2:33:5:0.500:2	0/1:12,11:26:23:0.478:2	./.	./.	./.	./.	0/1:3,19:30:22:0.864:2	./.	./.
chr1	38023316	rs11749	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,13:30:40:0.325:2	0/1:22,10:31:32:0.313:2	./.	./.	0/1:0,31:29:31:1.00:2	./.	0/1:29,19:31:48:0.396:2	0/1:0,39:29:39:1.00:2	./.	./.	0/1:32,15:29:47:0.319:2
chr1	38027737	rs138550216	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:29:68:0.471:2	./.	./.	./.	./.	./.
chr1	38030609	rs41267315	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:31:78:0.462:2	./.
chr1	38033291	rs34593152	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,65:31:123:0.528:2	0/1:43,29:32:72:0.403:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	38079517	rs36043533	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	38148765	rs684260	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,57:32:118:0.483:2	0/1:44,41:33:85:0.482:2	0/1:0,33:33:33:1.00:2	0/1:3,161:32:164:0.982:2	0/1:75,49:32:124:0.395:2	0/1:92,71:32:164:0.436:2	0/1:67,53:32:120:0.442:2	0/1:0,130:32:132:1.00:2	0/1:120,74:32:196:0.381:2	0/1:84,58:33:142:0.408:2	0/1:0,161:32:161:1.00:2
chr1	38149076	rs34250208	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,17:32:54:0.315:2	0/1:25,19:32:44:0.432:2	0/1:2,5:31:7:0.714:2	./.	0/1:24,23:32:47:0.489:2	./.	./.	0/1:58,58:31:117:0.500:2	./.	./.	./.
chr1	38152122	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.
chr1	38184470	rs610213	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,42:29:96:0.438:2	0/1:34,24:29:58:0.414:2	./.	./.	0/1:70,40:29:110:0.364:2	./.	./.	0/1:79,42:29:121:0.347:2	./.	./.	./.
chr1	38185647	rs2170809	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,81:31:171:0.474:2	./.	0/1:95,78:31:173:0.451:2	./.	./.	./.	0/1:90,61:31:151:0.404:2	0/1:88,65:31:154:0.425:2
chr1	38185723	rs6670599	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,51:31:92:0.554:2	./.	0/1:37,51:32:88:0.580:2	./.	./.	./.	0/1:50,39:32:89:0.438:2	0/1:41,44:32:85:0.518:2
chr1	38186189	rs6671088	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:83,45:32:128:0.352:2	0/1:33,44:31:77:0.571:2	0/1:22,8:30:30:0.267:2	./.	0/1:89,53:31:142:0.373:2	./.	./.	0/1:74,76:32:150:0.507:2	./.	./.	./.
chr1	38186206	rs12726343	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,57:30:121:0.471:2	./.	0/1:83,49:31:132:0.371:2	./.	./.	./.	0/1:66,57:30:123:0.463:2	0/1:56,64:31:120:0.533:2
chr1	38187447	rs579908	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,44:31:100:0.440:2	0/1:35,19:32:54:0.352:2	0/1:2,4:32:6:0.667:2	0/1:65,53:31:118:0.449:2	0/1:46,34:31:80:0.425:2	0/1:55,77:32:132:0.583:2	./.	0/1:43,34:32:77:0.442:2	./.	0/1:42,30:32:72:0.417:2	0/1:33,31:31:64:0.484:2
chr1	38187453	rs33970734	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,48:31:113:0.425:2	./.	0/1:55,74:31:129:0.574:2	./.	./.	./.	0/1:35,30:32:65:0.462:2	0/1:30,30:31:60:0.500:2
chr1	38188740	rs12405650	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,22:31:85:0.259:2	./.	0/1:58,26:30:84:0.310:2	./.	./.	./.	0/1:33,16:32:50:0.327:2	0/1:39,15:32:54:0.278:2
chr1	38188768	rs17464871	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,25:30:77:0.325:2	./.	0/1:47,29:30:76:0.382:2	./.	./.	./.	0/1:44,27:31:71:0.380:2	0/1:45,20:30:65:0.308:2
chr1	38188787	rs17511304	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,23:30:72:0.319:2	./.	0/1:40,28:31:68:0.412:2	./.	./.	./.	0/1:46,27:30:73:0.370:2	0/1:51,23:28:74:0.311:2
chr1	38262417	rs75705909	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,14:12:95:0.147:2	./.	./.	./.	./.	./.
chr1	38265764	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,7:17:36:0.194:2	./.	./.	./.
chr1	38265782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.
chr1	38287835	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,91:33:195:0.467:2	0/1:80,82:32:162:0.506:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	38289383	rs12751325	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,45:31:100:0.450:2	0/1:29,29:30:58:0.500:2	./.	./.	0/1:81,47:30:128:0.367:2	./.	0/1:58,41:30:99:0.414:2	0/1:46,45:30:91:0.495:2	0/1:1,121:31:122:0.992:2	0/1:0,102:30:102:1.00:2	./.
chr1	38329999	rs41311191	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	0/1:17,12:32:29:0.414:2	./.	./.	./.	./.	./.	0/1:31,34:34:65:0.523:2
chr1	38338795	rs11488569	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,33:31:62:0.532:2	0/1:23,15:30:38:0.395:2	0/1:7,11:30:18:0.611:2	0/1:49,34:29:83:0.410:2	0/1:0,56:30:56:1.00:2	./.	0/1:22,26:30:48:0.542:2	0/1:45,49:30:94:0.521:2	0/1:1,80:31:81:0.988:2	0/1:0,56:31:56:1.00:2	0/1:54,52:31:106:0.491:2
chr1	38348506	rs41307896	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	0/1:98,63:30:161:0.391:2	./.	./.	./.	./.	./.	0/1:108,84:31:192:0.438:2
chr1	38353941	rs28580141	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,25:29:64:0.391:2
chr1	38397341	rs34655914	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.	0/1:0,5:33:5:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,3:32:3:1.00:2
chr1	38397369	rs35267671	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,10:28:11:0.909:2	./.	./.	./.	0/1:0,8:32:8:1.00:2	0/1:1,3:30:4:0.750:2	0/1:0,3:33:3:1.00:2
chr1	38411445	rs871524	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,33:32:53:0.623:2	0/1:30,37:31:67:0.552:2	./.
chr1	38423853	rs9293	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,53:33:53:1.00:2	0/1:3,9:33:12:0.750:2	0/1:0,99:33:100:1.00:2	0/1:32,31:32:63:0.492:2	0/1:0,80:32:80:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,89:32:91:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,63:33:63:1.00:2	0/1:49,44:33:93:0.473:2
chr1	38433799	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.
chr1	38442547	rs10890216	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,68:31:68:1.00:2	0/1:42,29:31:71:0.408:2	0/1:0,86:30:86:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,42:31:42:1.00:2	0/1:62,39:32:101:0.386:2
chr1	38444658	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:18:43:0.140:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	38446319	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.	./.	0/1:186,6:30:192:0.031:2
chr1	38449910	rs11210870	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:2,35:33:37:0.946:2	0/1:8,9:32:17:0.529:2	0/1:52,4:32:56:0.071:2	./.	0/1:1,75:33:76:0.987:2	0/1:0,71:33:71:1.00:2	0/1:46,41:32:87:0.471:2	./.	0/1:34,28:33:62:0.452:2	0/1:33,30:33:63:0.476:2
chr1	38450367	rs6680796	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:29:107:1.00:2	0/1:0,64:30:64:1.00:2	0/1:5,3:31:8:0.375:2	0/1:0,90:30:90:1.00:2	0/1:45,30:29:75:0.400:2	0/1:0,89:29:89:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,111:30:111:1.00:2	0/1:1,88:30:90:0.989:2	0/1:70,33:30:103:0.320:2
chr1	38463504	rs7366048	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,37:31:37:1.00:2	0/1:4,8:30:12:0.667:2	0/1:0,80:31:81:1.00:2	./.	0/1:0,105:31:105:1.00:2	0/1:1,111:31:113:0.991:2	0/1:45,41:31:86:0.477:2	./.	0/1:36,39:32:75:0.520:2	0/1:45,33:31:78:0.423:2
chr1	38463692	rs369640388	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.
chr1	38464690	rs142528167	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,41:31:83:0.494:2	0/1:18,18:32:36:0.500:2	./.	./.	./.	./.	0/1:72,74:31:147:0.507:2	./.	./.	./.	./.
chr1	39311617	rs11549874	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,68:29:129:0.527:2	0/1:53,44:29:97:0.454:2	./.	0/1:67,68:29:135:0.504:2	./.	./.	./.	0/1:45,64:28:109:0.587:2	./.	./.	./.
chr1	39317396	rs147181818	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,49:30:126:0.389:2	./.	./.	./.	./.	./.	./.	./.
chr1	39330330	rs74064928	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:31:109:0.459:2	./.	./.	./.	./.	./.
chr1	39330399	rs3828041	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	0/1:31,21:31:52:0.404:2	./.	./.	./.	./.	./.	0/1:0,84:31:84:1.00:2
chr1	39340282	rs880303	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,23:32:65:0.354:2	0/1:24,17:32:41:0.415:2	./.	0/1:41,29:31:70:0.414:2	0/1:21,27:31:48:0.563:2	./.	0/1:21,28:32:49:0.571:2	./.	./.	0/1:31,40:31:71:0.563:2	./.
chr1	39340419	rs61744044	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,89:30:194:0.459:2	./.	./.	./.	./.	./.
chr1	39340504	rs41270783	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,91:31:178:0.511:2	./.	./.	./.	0/1:83,63:30:146:0.432:2	./.	./.	./.
chr1	39340558	rs75632250	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,47:31:106:0.443:2	./.	./.	./.	./.	./.	./.
chr1	39340607	rs16825625	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,40:33:103:0.388:2	0/1:63,62:33:125:0.496:2	./.	./.	./.
chr1	39340782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.
chr1	39340862	rs874243	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:91,68:33:159:0.428:2	0/1:41,43:32:84:0.512:2	0/1:7,3:31:10:0.300:2	./.	0/1:72,54:33:126:0.429:2	./.	./.	./.	./.	./.	0/1:1,178:33:179:0.994:2
chr1	39352271	rs2147914	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,20:32:54:0.370:2	0/1:11,10:31:21:0.476:2	./.	0/1:29,20:31:49:0.408:2	0/1:36,22:31:58:0.379:2	./.	0/1:45,39:32:84:0.464:2	./.	./.	0/1:17,22:32:39:0.564:2	./.
chr1	39748921	rs2275188	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,26:33:49:0.531:2	0/1:0,38:31:38:1.00:2	./.	./.	0/1:1,60:32:61:0.984:2	0/1:0,65:34:65:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,76:32:76:1.00:2
chr1	39776505	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	39797055	rs16826069	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,24:29:72:0.333:2	./.	0/1:52,31:29:83:0.373:2	./.	./.	./.	./.	./.
chr1	39797300	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,13:32:47:0.277:2	./.	./.
chr1	39798946	rs41270805	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:30:93:0.419:2	0/1:15,20:29:35:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	39799679	rs16826077	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:32:59:0.525:2	0/1:24,28:31:52:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	39799860	rs139218331	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:33:48:0.396:2	./.
chr1	39799891	rs150706108	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.	./.	./.	./.	./.
chr1	39799912	rs75770915	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,19:30:51:0.373:2	0/1:21,12:32:33:0.364:2	./.	./.	./.	./.	0/1:0,20:32:20:1.00:2	./.	./.	./.	./.
chr1	39800639	rs147062334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,15:30:56:0.268:2	./.	./.	./.	./.	./.
chr1	39801815	rs41270807	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:32:44:0.386:2	./.	0/1:34,27:32:61:0.443:2	./.	./.	./.	./.	./.
chr1	39806610	rs3116396	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,22:32:22:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,38:31:38:1.00:2
chr1	39812822	rs2761764	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,103:32:104:0.990:2	0/1:0,134:32:134:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,146:32:146:1.00:2
chr1	39818764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.
chr1	39824896	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	39835817	rs2296172	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:33:20:0.500:2	./.	0/1:4,12:30:16:0.750:2	./.	./.	./.	./.	./.
chr1	39838174	rs80197726	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,29:33:71:0.414:2	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.	0/1:2,36:33:38:0.947:2	./.	./.	./.	./.
chr1	39838268	rs146021397	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:28:37:0.459:2	./.	./.	./.	./.	./.
chr1	39852895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.
chr1	39853163	rs79901102	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:32:16:0.188:2	./.	./.	./.	./.	./.
chr1	39853341	rs146321347	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	./.	./.	./.	./.	./.
chr1	39853365	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.	./.
chr1	39853973	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	39878815	rs1746842	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,29:32:61:0.475:2	0/1:13,16:32:29:0.552:2	./.	./.	./.	./.	0/1:3,89:32:92:0.967:2	./.	./.	./.	./.
chr1	39879366	rs604316	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,7:28:7:1.00:2	./.	0/1:12,8:28:20:0.400:2	./.	0/1:0,17:27:17:1.00:2	0/1:3,11:30:14:0.786:2	./.	./.	./.	./.
chr1	39879412	rs55976345	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:29:38:0.579:2
chr1	39880274	rs783823	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	0/1:17,7:32:24:0.292:2	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2	./.	./.	./.	./.
chr1	39880319	rs3768302	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,18:32:35:0.514:2	./.	0/1:20,23:32:43:0.535:2	./.	./.	./.	./.	./.
chr1	39880765	rs783824	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,17:32:36:0.472:2	0/1:19,13:32:32:0.406:2	./.	./.	./.	./.	0/1:3,36:32:39:0.923:2	./.	./.	./.	./.
chr1	39881040	rs1180375	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:34:18:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,2:35:2:1.00:2	0/1:13,8:32:21:0.381:2	./.	0/1:10,13:33:23:0.565:2	0/1:1,21:32:22:0.955:2	./.	./.	./.	./.
chr1	39881415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:117:0.034:2	./.	./.	./.	./.	./.
chr1	39881468	rs17343193	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,88:30:187:0.471:2	./.	0/1:72,65:30:137:0.474:2	./.	./.	./.	./.	./.
chr1	39896475	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.
chr1	39898828	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.
chr1	39900230	rs138450442	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.
chr1	39908506	rs587404	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,60:31:61:0.984:2	0/1:0,42:32:42:1.00:2	./.	0/1:54,35:31:89:0.393:2	./.	0/1:34,38:31:73:0.528:2	0/1:1,85:30:86:0.988:2	./.	./.	./.	./.
chr1	39914363	rs668556	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,12:33:12:1.00:2	0/1:28,24:34:52:0.462:2	0/1:0,45:32:45:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,29:33:29:1.00:2	./.	./.	0/1:14,18:33:32:0.563:2	0/1:32,32:32:64:0.500:2
chr1	39917888	rs1746838	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,32:33:50:0.640:2	0/1:7,17:32:24:0.708:2	./.	./.	./.	./.	0/1:2,52:32:54:0.963:2	./.	./.	./.	./.
chr1	39945661	rs202091916	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,12:15:73:0.164:2
chr1	39976865	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,86:29:192:0.448:2	./.	./.	./.	./.	./.	./.	0/1:137,57:30:194:0.294:2
chr1	39976930	rs201515760	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,33:30:192:0.172:2	./.	./.	./.	./.
chr1	39976974	rs202230393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,25:29:197:0.127:2	./.	./.	./.	./.
chr1	39976997	rs201346829	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,36:32:188:0.191:2	0/1:132,38:31:170:0.224:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	39977575	rs200415763	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,125:32:169:0.740:2	0/1:26,92:32:118:0.780:2	0/1:32,10:31:42:0.238:2	0/1:0,165:31:165:1.00:2	0/1:87,68:32:155:0.439:2	0/1:91,62:31:153:0.405:2	0/1:83,69:32:152:0.454:2	0/1:90,70:32:160:0.438:2	0/1:0,181:32:181:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,175:32:175:1.00:2
chr1	39987183	rs139271312	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,62:31:169:0.367:2	./.	./.	./.	./.	./.
chr1	39987190	rs115627781	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,8:31:86:0.093:2	0/1:70,12:31:82:0.146:2	./.	./.	./.	./.	0/1:0,7:28:7:1.00:2	./.	./.	0/1:0,4:24:4:1.00:2	0/1:0,4:30:4:1.00:2
chr1	39987201	rs144103941	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	0/1:8,3:32:11:0.273:2	./.
chr1	39988084	rs6525	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,13:31:82:0.159:2	./.	./.	0/1:1,43:30:44:0.977:2	0/1:0,43:32:43:1.00:2	0/1:0,17:31:17:1.00:2	0/1:132,14:31:146:0.096:2
chr1	39988145	rs6524	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:89,5:29:94:0.053:2	./.	./.	0/1:62,92:28:154:0.597:2	./.	0/1:91,73:29:164:0.445:2	./.	0/1:121,12:26:133:0.090:2	0/1:107,36:31:143:0.252:2	0/1:59,10:32:69:0.145:2	0/1:90,37:30:127:0.291:2
chr1	39988708	rs2889739	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,61:29:106:0.575:2	0/1:58,62:29:120:0.517:2	./.	./.	./.	./.	./.
chr1	40027464	rs12755743	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,22:31:73:0.301:2
chr1	40030823	rs12127094	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,23:32:50:0.460:2	0/1:16,8:31:24:0.333:2	./.	./.	0/1:30,13:31:43:0.302:2	0/1:37,26:29:63:0.413:2	./.	./.	./.	./.	./.
chr1	40036944	rs61743745	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,53:32:110:0.482:2	0/1:34,37:31:71:0.521:2	./.	./.	./.	./.	0/1:96,72:31:168:0.429:2	./.	./.	./.	./.
chr1	40041482	rs201860976	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,6:24:48:0.125:2	./.	./.	./.	0/1:60,9:20:69:0.130:2	./.	0/1:57,12:20:69:0.174:2	0/1:67,11:18:78:0.141:2	0/1:39,5:23:44:0.114:2	./.	0/1:32,7:21:39:0.179:2
chr1	40092227	rs139544750	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,20:28:54:0.370:2	./.	./.	./.	./.	./.	./.
chr1	40098328	rs784625	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,127:30:127:1.00:2	0/1:0,128:30:128:1.00:2	0/1:1,93:30:95:0.989:2	0/1:1,72:29:73:0.986:2	0/1:0,114:29:114:1.00:2
chr1	40148382	rs76877577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,79:32:154:0.513:2	./.	./.	./.
chr1	40149642	rs784634	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,26:32:46:0.565:2	0/1:16,16:31:32:0.500:2	0/1:0,12:31:12:1.00:2	0/1:0,49:30:50:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,46:28:46:1.00:2	0/1:33,28:31:61:0.459:2	0/1:0,68:30:68:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,37:30:37:1.00:2
chr1	40150156	rs9662128	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,92:32:93:0.989:2	0/1:44,38:31:82:0.463:2	0/1:73,56:31:129:0.434:2	0/1:65,50:32:115:0.435:2	0/1:0,84:32:84:1.00:2	0/1:0,83:31:83:1.00:2	./.
chr1	40226103	rs41267037	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,80:29:139:0.580:2	./.	./.	./.	./.	./.	./.
chr1	40229368	rs2463260	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,23:32:57:0.404:2	0/1:19,11:32:30:0.367:2	./.	0/1:0,30:32:30:1.00:2	./.	0/1:2,25:31:27:0.926:2	./.	0/1:60,39:32:99:0.394:2	0/1:0,85:32:85:1.00:2	0/1:26,21:32:47:0.447:2	0/1:26,9:33:35:0.257:2
chr1	40229393	rs77290565	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,8:31:105:0.076:2	./.	./.	0/1:106,28:31:134:0.209:2	0/1:105,20:32:125:0.160:2	0/1:61,23:32:84:0.274:2	0/1:38,7:32:45:0.156:2
chr1	40229454	rs150014470	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:25:5:0.800:2	./.	0/1:0,8:28:8:1.00:2	./.	./.	./.	./.	0/1:101,6:26:107:0.056:2
chr1	40230336	rs76376226	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,38:31:198:0.192:2	0/1:141,53:31:194:0.273:2	./.	./.	0/1:132,62:32:194:0.320:2	0/1:141,49:33:190:0.258:2	0/1:123,66:32:189:0.349:2	./.
chr1	40230347	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:30:186:0.027:2	./.	./.	0/1:180,4:32:185:0.022:2	./.	./.
chr1	40230354	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,9:33:187:0.048:2	./.	./.	./.	./.	./.
chr1	40235448	rs150795467	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,34:30:185:0.186:2	0/1:162,29:32:191:0.152:2	0/1:51,19:31:70:0.271:2	0/1:143,55:31:198:0.278:2	0/1:170,22:32:192:0.115:2	0/1:160,31:31:191:0.162:2	0/1:161,32:32:195:0.166:2	./.	./.	./.	0/1:166,25:31:191:0.131:2
chr1	40235489	rs77857664	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,32:32:193:0.166:2	0/1:170,25:30:195:0.128:2	0/1:58,27:31:85:0.318:2	0/1:140,55:32:195:0.282:2	0/1:84,112:32:196:0.571:2	0/1:159,34:32:193:0.176:2	0/1:162,37:32:199:0.186:2	0/1:135,56:31:191:0.293:2	0/1:128,68:34:196:0.347:2	0/1:136,57:31:193:0.295:2	0/1:137,50:31:187:0.267:2
chr1	40235796	rs200725321	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,85:32:191:0.445:2	./.	./.	./.	./.	./.	./.	0/1:142,39:31:182:0.215:2
chr1	40235940	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:124,34:28:158:0.215:2	0/1:86,17:28:103:0.165:2	0/1:21,13:29:34:0.382:2	./.	0/1:149,48:29:197:0.244:2	0/1:141,44:29:185:0.238:2	./.	./.	./.	./.	./.
chr1	40236014	rs200262941	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,60:31:128:0.469:2	./.	./.	./.	./.	./.	./.	0/1:106,21:32:127:0.165:2
chr1	40236074	rs230321	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:85,18:30:103:0.175:2	0/1:48,16:30:64:0.250:2	./.	0/1:0,47:31:47:1.00:2	./.	0/1:4,45:30:50:0.918:2	0/1:122,20:30:142:0.141:2	./.	./.	0/1:168,14:30:182:0.077:2	0/1:3,60:30:63:0.952:2
chr1	40236580	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:29:24:0.125:2	./.	./.	./.	./.	./.
chr1	40239981	rs199841910	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,141:32:192:0.734:2	0/1:40,123:31:163:0.755:2	0/1:35,9:32:44:0.205:2	0/1:2,186:31:188:0.989:2	0/1:114,85:31:199:0.427:2	0/1:117,76:31:193:0.394:2	0/1:104,87:31:191:0.455:2	0/1:111,88:31:199:0.442:2	0/1:2,189:32:191:0.990:2	0/1:0,192:32:193:1.00:2	0/1:0,189:31:189:1.00:2
chr1	40240559	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,38:32:186:0.204:2	0/1:144,32:31:176:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40240582	rs200876716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,40:31:190:0.211:2	./.	./.	./.	./.
chr1	40240626	rs201381914	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,38:28:194:0.198:2	./.	./.	./.	./.
chr1	40240691	rs370056406	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,109:30:188:0.580:2	./.	./.	./.	./.	./.	./.	0/1:137,42:31:181:0.235:2
chr1	40309856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:130:0.031:2
chr1	40310221	rs16826617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,40:32:92:0.435:2	./.	./.	./.	./.	./.	./.
chr1	40313756	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,5:29:99:0.051:2	./.	./.	./.	./.
chr1	40315888	rs3738671	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:28:46:0.435:2	./.	./.	./.
chr1	40349131	rs3845570	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:31:67:0.493:2	0/1:40,35:31:75:0.467:2	0/1:34,35:31:69:0.507:2	0/1:51,4:32:55:0.073:2	0/1:0,77:31:77:1.00:2	./.	0/1:23,31:32:54:0.574:2	0/1:17,25:31:42:0.595:2
chr1	40363054	rs3134614	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,4:30:4:1.00:2	0/1:14,26:32:40:0.650:2	0/1:0,35:32:35:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,37:34:37:1.00:2	0/1:20,14:31:34:0.412:2	0/1:19,24:32:43:0.558:2
chr1	40363170	rs1800834	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:34:54:0.537:2	./.	./.
chr1	40366768	rs61751008	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.
chr1	40430937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40435157	rs41268047	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,63:29:136:0.463:2	0/1:62,39:27:101:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,87:28:187:0.465:2
chr1	40533266	rs11207440	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,50:31:50:1.00:2
chr1	40533287	rs6665926	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:27:16:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,18:30:19:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,26:27:26:1.00:2
chr1	40533315	rs6665933	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,4:34:4:1.00:2
chr1	40533320	rs6665936	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:34:2:1.00:2
chr1	40533326	rs6665937	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:34:5:1.00:2	./.	./.	0/1:0,11:34:11:1.00:2	0/1:1,12:35:13:0.923:2	0/1:0,10:34:10:1.00:2	0/1:0,11:35:11:1.00:2	0/1:0,7:35:7:1.00:2	0/1:0,6:36:6:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,8:33:9:0.889:2
chr1	40533347	rs6665944	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,51:34:51:1.00:2	0/1:1,38:33:39:0.974:2	0/1:0,36:35:36:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,27:33:27:1.00:2
chr1	40535481	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,12:15:64:0.188:2	0/1:69,8:22:77:0.104:2	0/1:62,8:17:70:0.114:2	./.	./.	./.
chr1	40535490	rs200369781	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:59,9:19:68:0.132:2	./.	./.	./.	./.	./.	0/1:68,9:20:77:0.117:2	0/1:69,11:15:80:0.138:2	0/1:66,8:18:74:0.108:2	0/1:38,11:18:49:0.224:2	0/1:68,9:18:78:0.117:2
chr1	40542557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:34:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40557033	rs1800205	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:32:83:0.446:2	./.	./.	./.
chr1	40559686	rs7533094	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,35:32:60:0.583:2	./.	./.	./.
chr1	40668244	rs112377652	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,61:30:170:0.359:2	./.	./.	./.	./.	./.
chr1	40703440	rs2235986	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:32:55:0.455:2	./.	./.	./.
chr1	40705726	rs10889205	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,29:32:56:0.518:2	0/1:13,8:32:21:0.381:2	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	0/1:23,17:30:40:0.425:2	./.
chr1	40716970	rs115454619	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:30:58:0.500:2	./.	./.	./.	./.	./.
chr1	40737589	rs2076697	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,54:32:105:0.514:2	./.	./.	./.	./.	./.	./.	0/1:82,94:32:176:0.534:2
chr1	40751689	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.
chr1	40769588	rs112370406	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2
chr1	40769783	rs77695700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.
chr1	40773123	rs2228567	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:42,28:28:70:0.400:2	./.	./.	./.	0/1:45,30:29:75:0.400:2	0/1:38,40:30:78:0.513:2	./.	./.
chr1	40773149	rs2228564	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,52:29:52:1.00:2	0/1:28,36:28:64:0.563:2	0/1:38,41:29:79:0.519:2	./.	0/1:81,4:29:85:0.047:2	./.	0/1:32,38:30:70:0.543:2
chr1	40773175	rs118135975	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40775937	rs2228565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:33:20:0.250:2
chr1	40776752	rs3737815	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,99:30:99:1.00:2	./.	./.	./.	./.	./.	0/1:45,38:31:83:0.458:2
chr1	40777800	rs1979785	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:0,47:32:47:1.00:2	0/1:25,22:31:47:0.468:2	0/1:22,21:31:43:0.488:2	./.	./.	./.	0/1:23,25:32:48:0.521:2
chr1	40777804	rs78091688	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:27:44:0.432:2	0/1:22,18:26:40:0.450:2	./.	./.	./.	./.
chr1	40778108	rs140071740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,48:31:89:0.539:2	./.	./.	./.
chr1	40840353	rs1003710	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:1,35:31:36:0.972:2	./.	0/1:1,108:32:109:0.991:2	./.	./.	0/1:44,22:31:66:0.333:2	0/1:63,37:30:100:0.370:2	0/1:64,62:32:127:0.492:2	0/1:40,41:31:81:0.506:2	./.
chr1	40881041	rs209606	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,101:31:101:1.00:2	0/1:0,55:30:55:1.00:2	./.	0/1:2,85:30:87:0.977:2	0/1:36,29:30:65:0.446:2	0/1:0,79:29:79:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,109:30:109:1.00:2
chr1	40922667	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.	./.
chr1	40923019	rs2272994	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:31:9:0.556:2	0/1:37,25:31:62:0.403:2	./.	0/1:42,32:30:74:0.432:2	0/1:24,37:31:61:0.607:2	./.	./.	0/1:36,19:32:55:0.345:2	./.
chr1	40928145	rs61740805	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:33:61:0.475:2	0/1:29,18:31:47:0.383:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40960827	rs150232367	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:30:64:0.516:2	./.	./.	./.
chr1	40961063	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.
chr1	40961389	rs187272521	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,9:29:24:0.375:2	./.	./.	./.	./.	./.	./.
chr1	40961449	rs3795348	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,35:32:70:0.500:2	0/1:21,7:31:28:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40980559	rs1134586	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.	./.	./.	./.
chr1	40980668	rs35672330	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:33:101:0.475:2	./.	./.
chr1	40980731	rs11208299	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:72,51:32:123:0.415:2	0/1:35,28:31:63:0.444:2	0/1:8,5:29:13:0.385:2	./.	./.	0/1:92,62:31:154:0.403:2	0/1:77,63:31:140:0.450:2	./.	./.	0/1:48,42:31:90:0.467:2	./.
chr1	40981230	rs3795344	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:32:78:0.487:2	0/1:25,17:32:42:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40981884	rs193145548	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,56:32:152:0.368:2	./.	./.	./.	./.
chr1	40982042	rs7522878	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:28:18:0.500:2	./.	./.	./.	0/1:10,6:28:16:0.375:2	./.
chr1	40998811	rs6659361	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,36:30:74:0.486:2	./.	./.	./.	./.
chr1	41013015	rs2297755	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,12:31:53:0.226:2	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.
chr1	41204569	rs1057925	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,38:31:38:1.00:2	./.	0/1:52,46:31:98:0.469:2	0/1:49,38:31:87:0.437:2	0/1:0,91:31:91:1.00:2	0/1:1,108:31:109:0.991:2	0/1:82,56:31:138:0.406:2	0/1:40,39:31:79:0.494:2	0/1:46,34:31:80:0.425:2	0/1:0,123:31:123:1.00:2
chr1	41223014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:186:0.022:2	./.	./.	./.	./.	./.
chr1	41285087	rs4660468	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,41:29:105:0.394:2	0/1:25,24:30:49:0.490:2	0/1:0,24:30:24:1.00:2	0/1:0,168:30:168:1.00:2	0/1:111,74:31:185:0.400:2	0/1:82,72:29:154:0.468:2	0/1:112,75:30:187:0.401:2	0/1:1,183:29:184:0.995:2	0/1:83,77:30:160:0.481:2	./.	0/1:0,107:30:107:1.00:2
chr1	41285553	rs55737429	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,83:32:186:0.446:2	./.	./.	./.	./.	./.
chr1	41296828	rs34287852	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,59:32:121:0.488:2	0/1:32,44:32:76:0.579:2	0/1:20,9:33:29:0.310:2	0/1:92,83:31:175:0.474:2	0/1:107,74:30:182:0.409:2	./.	0/1:104,52:31:156:0.333:2	./.	0/1:92,69:33:161:0.429:2	./.	./.
chr1	41300690	rs55964611	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,92:31:198:0.465:2	./.	./.	./.	./.	./.	./.
chr1	41485902	rs3738368	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:31:10:1.00:2	./.	0/1:22,25:33:47:0.532:2	./.	./.	0/1:34,22:32:56:0.393:2	0/1:0,49:33:49:1.00:2	0/1:23,26:33:49:0.531:2	./.
chr1	41485933	rs61734920	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:32:50:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr1	41486245	rs1138293	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	0/1:18,20:32:38:0.526:2	0/1:24,19:30:43:0.442:2	0/1:14,10:30:24:0.417:2	./.
chr1	41512116	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:166:0.024:2	./.
chr1	41618304	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:32:35:0.371:2	./.	./.
chr1	41848296	rs4359027	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,18:26:28:0.643:2	0/1:16,15:25:31:0.484:2	0/1:2,33:27:35:0.943:2	0/1:0,24:27:24:1.00:2	./.	0/1:6,8:29:14:0.571:2	./.
chr1	41950274	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,88:30:180:0.489:2	./.	./.	./.	./.	./.	./.
chr1	41950287	rs11572343	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,24:30:42:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	41976328	rs9439043	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:28:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	41978566	rs2991344	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,18:31:18:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,13:31:14:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,10:31:10:1.00:2
chr1	41978825	rs2483689	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:31:115:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,144:31:144:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,134:31:134:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,111:31:111:1.00:2
chr1	41979156	rs615177	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:32:17:0.353:2	0/1:0,15:31:15:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,11:32:11:1.00:2	./.	0/1:8,5:31:13:0.385:2	./.
chr1	41979249	rs12744227	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:24:43:0.561:2	0/1:9,12:31:21:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:27:37:0.472:2	./.
chr1	42046613	rs12132697	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,37:31:71:0.521:2	0/1:3,37:31:40:0.925:2	0/1:46,33:30:79:0.418:2	./.	./.	0/1:23,26:32:49:0.531:2	0/1:1,46:32:47:0.979:2	./.
chr1	42046812	rs2810565	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:30:35:1.00:2	0/1:0,18:31:19:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,27:29:28:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,37:29:38:1.00:2	0/1:0,31:29:33:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,32:31:33:1.00:2	0/1:0,31:31:32:1.00:2
chr1	42047300	rs41269473	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:31:61:0.541:2	./.	./.	./.
chr1	42048745	rs2810566	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:26:39:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,2:28:2:1.00:2	0/1:1,44:27:45:0.978:2	0/1:0,50:28:50:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,51:28:51:1.00:2	0/1:2,66:29:68:0.971:2	0/1:0,27:26:27:1.00:2	0/1:0,52:26:52:1.00:2
chr1	42049032	rs2984694	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,79:31:80:0.988:2	0/1:0,51:31:51:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,183:31:183:1.00:2	0/1:1,127:31:128:0.992:2	0/1:2,154:31:156:0.987:2	0/1:0,173:31:173:1.00:2	0/1:0,125:32:126:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,86:31:86:1.00:2
chr1	42049140	rs2475842	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,117:32:117:1.00:2	0/1:2,128:32:130:0.985:2	0/1:0,80:33:80:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,60:31:60:1.00:2
chr1	42050366	rs2146315	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:31:28:0.429:2	./.	0/1:12,17:28:29:0.586:2	./.	0/1:0,60:31:60:1.00:2	./.	./.	./.
chr1	42619152	rs2297567	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:30:50:0.440:2	0/1:2,45:31:47:0.957:2	./.	0/1:14,16:31:30:0.533:2	0/1:13,17:31:30:0.567:2	0/1:11,22:32:33:0.667:2
chr1	42630364	rs2071499	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,56:31:113:0.496:2	0/1:29,45:31:74:0.608:2	0/1:0,7:32:7:1.00:2	0/1:2,140:30:142:0.986:2	0/1:0,192:30:192:1.00:2	0/1:100,88:30:188:0.468:2	./.	0/1:2,184:30:186:0.989:2	./.	0/1:96,71:31:167:0.425:2	0/1:60,38:31:98:0.388:2
chr1	42657196	rs1139978	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,25:31:63:0.397:2	./.	./.	./.	./.	./.	./.	./.	0/1:99,87:32:186:0.468:2
chr1	42693597	rs343376	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,24:30:24:1.00:2	0/1:27,29:30:56:0.518:2	./.	0/1:0,78:30:78:1.00:2	0/1:54,25:31:79:0.316:2	0/1:34,22:31:56:0.393:2	0/1:43,30:29:73:0.411:2
chr1	42776695	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:21:49:0.102:2	./.	./.	./.	./.	./.
chr1	42776699	rs200354449	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,9:15:57:0.158:2	./.	./.	0/1:62,13:18:75:0.173:2	0/1:59,9:17:68:0.132:2	0/1:46,8:20:54:0.148:2	./.	./.	0/1:49,9:15:58:0.155:2	0/1:48,6:20:54:0.111:2	0/1:46,11:20:57:0.193:2
chr1	42880516	rs1055055	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,26:29:61:0.426:2	0/1:20,24:28:44:0.545:2	0/1:2,6:28:8:0.750:2	0/1:0,76:29:76:1.00:2	0/1:0,92:28:92:1.00:2	0/1:29,25:30:54:0.463:2	0/1:51,51:29:102:0.500:2	0/1:3,103:29:106:0.972:2	0/1:0,111:30:111:1.00:2	0/1:32,38:29:70:0.543:2	0/1:33,44:28:77:0.571:2
chr1	42898843	rs1034268	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,55:33:55:1.00:2	./.	0/1:1,73:33:74:0.986:2	0/1:0,41:32:41:1.00:2	0/1:45,24:32:69:0.348:2	0/1:21,13:33:34:0.382:2	0/1:45,39:34:84:0.464:2	0/1:40,55:34:95:0.579:2	0/1:35,42:33:77:0.545:2	./.
chr1	42915727	rs12047095	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:32:34:0.382:2	0/1:13,6:31:19:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	42922946	rs115737664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,60:32:142:0.423:2	./.	./.	./.	./.	./.
chr1	42925365	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,12:13:96:0.125:2
chr1	43042703	rs12049046	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,21:32:62:0.339:2	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43047057	rs12037518	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,69:33:170:0.406:2	0/1:38,59:33:97:0.608:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43076681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:34:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43108188	rs12036818	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,58:30:119:0.487:2	./.	./.	./.
chr1	43119595	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.
chr1	43119661	rs16829829	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	0/1:15,22:32:37:0.595:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43125032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.
chr1	43131653	rs12244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,98:32:198:0.495:2	./.	./.	./.
chr1	43161877	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,5:34:53:0.094:2	./.
chr1	43161928	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.
chr1	43162450	rs200382855	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2
chr1	43162494	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43162501	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43166460	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:32:136:0.037:2	./.	./.	./.
chr1	43166630	rs200741644	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,23:30:159:0.145:2	0/1:142,25:30:167:0.150:2	0/1:145,5:31:150:0.033:2	0/1:136,7:30:143:0.049:2	0/1:157,11:31:168:0.065:2	0/1:147,10:31:157:0.064:2	0/1:118,5:28:123:0.041:2	./.
chr1	43166653	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,7:32:156:0.045:2	./.	./.	./.	./.	./.	./.
chr1	43201614	rs9660973	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:32:49:0.571:2	0/1:15,25:32:40:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43212431	rs4660662	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:31:107:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,16:34:16:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,92:30:92:1.00:2
chr1	43212869	rs3738496	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,69:30:137:0.507:2	./.	0/1:51,59:31:110:0.536:2	0/1:57,46:30:103:0.447:2	./.
chr1	43212926	rs67014447	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:29:51:0.569:2	0/1:16,23:30:39:0.590:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43215930	rs11581921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:31:14:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43223489	rs6700677	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:31:83:0.470:2	0/1:21,24:31:45:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43232504	rs55716016	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43259364	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,5:30:194:0.026:2	./.	./.	./.	./.	./.	./.
chr1	43296118	rs12124733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,91:32:191:0.476:2	./.	./.	./.
chr1	43296173	rs33950227	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,32:32:100:0.320:2	0/1:31,30:32:61:0.492:2	./.	0/1:77,54:31:131:0.412:2	0/1:2,139:31:141:0.986:2	0/1:83,46:31:129:0.357:2	./.	./.	./.	./.	./.
chr1	43296174	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:30:128:0.039:2	./.	./.	./.	./.	./.
chr1	43296195	rs33953680	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,26:31:85:0.310:2	0/1:27,24:31:51:0.471:2	./.	0/1:55,44:29:99:0.444:2	0/1:1,109:30:110:0.991:2	0/1:65,31:29:97:0.323:2	0/1:66,43:31:109:0.394:2	./.	./.	./.	./.
chr1	43301454	rs34475455	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,40:32:66:0.606:2	./.	./.	./.	./.
chr1	43305753	rs12034000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,56:31:163:0.344:2	./.	./.	./.
chr1	43317332	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr1	43317696	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2
chr1	43317793	rs9960	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,29:30:31:0.935:2	./.	0/1:99,90:31:189:0.476:2	./.	./.	./.	./.	./.	./.
chr1	43317887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43395635	rs2229682	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,95:32:186:0.511:2	0/1:98,98:32:196:0.500:2	./.	./.	./.	./.	./.	./.
chr1	43396414	rs11537641	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,43:31:78:0.551:2	0/1:37,32:30:70:0.464:2	./.	./.	./.	./.	./.	./.
chr1	43408966	rs1385129	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,33:32:69:0.478:2	0/1:54,47:32:101:0.465:2	./.	./.	./.	./.	./.	./.
chr1	43610910	rs626842	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:34:114:0.035:2	0/1:0,58:32:58:1.00:2	0/1:40,46:32:86:0.535:2	0/1:54,38:33:92:0.413:2	0/1:47,36:32:83:0.434:2	./.	./.	./.
chr1	43618596	rs12074551	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,99:30:101:0.990:2	./.	0/1:81,61:31:142:0.430:2	./.	./.	./.	./.
chr1	43632536	rs7163	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	./.	0/1:31,13:32:44:0.295:2	./.	./.	./.	./.
chr1	43636484	rs1049276	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,77:33:78:0.987:2	./.	0/1:57,54:33:111:0.486:2	./.	./.	./.	./.
chr1	43637549	rs1691289	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,70:28:72:0.972:2	./.	0/1:42,39:28:81:0.481:2	./.	./.	./.	./.
chr1	43638457	rs1782387	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,133:29:136:0.978:2	./.	0/1:101,76:29:177:0.429:2	./.	./.	./.	./.
chr1	43649336	rs75528102	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,44:30:117:0.376:2	./.	./.	./.
chr1	43649393	rs663336	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,61:32:140:0.436:2	./.	./.	./.
chr1	43649508	rs663824	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,93:30:94:0.989:2	0/1:51,52:30:103:0.505:2	0/1:60,59:30:119:0.496:2	0/1:57,56:31:113:0.496:2	./.	./.	./.
chr1	43652442	rs11210805	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,37:32:88:0.420:2	./.	./.	./.
chr1	43664218	rs603123	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,53:31:56:0.946:2	./.	0/1:31,32:32:63:0.508:2	./.	./.	./.	./.
chr1	43675467	rs2453412	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,119:31:121:0.983:2	0/1:0,79:31:79:1.00:2	0/1:0,27:31:27:1.00:2	0/1:1,171:31:172:0.994:2	0/1:0,167:31:167:1.00:2	0/1:0,187:31:187:1.00:2	0/1:1,166:32:167:0.994:2	0/1:97,96:32:194:0.497:2	0/1:2,161:32:163:0.988:2	0/1:1,139:31:141:0.993:2	0/1:3,124:31:127:0.976:2
chr1	43675499	rs41301054	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,50:32:115:0.435:2	0/1:83,73:32:156:0.468:2	./.	./.	./.
chr1	43687832	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,58:32:99:0.586:2	./.	./.
chr1	43699970	rs2484714	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:29:57:0.368:2	./.	./.	./.	./.	./.
chr1	43738603	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,33:31:79:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr1	43738633	rs371951750	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2
chr1	43738829	rs142942435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:31:100:0.510:2	./.	./.	./.	./.	./.
chr1	43766756	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,26:10:181:0.145:2	./.
chr1	43772905	rs184359533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:30:29:0.586:2	./.
chr1	43775114	rs148779141	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,83:32:189:0.439:2	./.	./.	./.	./.	./.
chr1	43777400	rs143131144	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,41:29:86:0.477:2	./.	./.	./.	./.	./.
chr1	43779564	rs3120276	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:29:18:1.00:2	0/1:91,72:30:163:0.442:2	0/1:103,81:31:184:0.440:2	0/1:90,79:30:169:0.467:2	0/1:95,94:30:189:0.497:2	0/1:0,184:29:184:1.00:2	0/1:0,141:30:141:1.00:2	0/1:69,61:29:130:0.469:2	0/1:52,50:30:102:0.490:2
chr1	43782900	rs149581858	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43784956	rs1199039	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:62,55:33:117:0.470:2	0/1:0,64:32:64:1.00:2	0/1:3,101:32:104:0.971:2	0/1:68,56:32:124:0.452:2	./.	./.	0/1:48,45:33:93:0.484:2	0/1:61,45:33:106:0.425:2
chr1	43804340	rs12731981	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:30:56:0.518:2	./.	./.	./.
chr1	43825644	rs839763	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:28,36:31:64:0.563:2	0/1:30,29:30:59:0.492:2	0/1:0,67:31:67:1.00:2	0/1:45,22:32:67:0.328:2	./.	./.	0/1:35,33:32:68:0.485:2	0/1:32,27:31:59:0.458:2
chr1	43829751	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43891587	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:29:97:0.041:2	./.	./.	./.
chr1	43893100	rs140788949	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:29:65:0.415:2	./.	./.	./.	./.	./.
chr1	43902952	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:31:66:0.409:2
chr1	43905286	rs72671125	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,47:30:108:0.435:2	./.	./.	./.	./.	./.	./.
chr1	43906896	rs2027130	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:1,27:32:28:0.964:2	./.	0/1:25,23:32:48:0.479:2	0/1:29,25:33:54:0.463:2	0/1:39,27:32:66:0.409:2	0/1:0,56:33:56:1.00:2	0/1:23,27:33:50:0.540:2	./.	0/1:17,28:33:45:0.622:2	0/1:0,75:33:75:1.00:2
chr1	43913893	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.
chr1	43917637	rs2251802	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,87:30:87:1.00:2	0/1:1,59:31:60:0.983:2	./.	0/1:73,55:29:128:0.430:2	0/1:59,63:30:122:0.516:2	0/1:1,130:30:131:0.992:2	0/1:3,125:30:128:0.977:2	0/1:80,72:31:152:0.474:2	./.	0/1:64,47:30:111:0.423:2	0/1:0,83:30:83:1.00:2
chr1	43919098	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.
chr1	44035352	rs1065771	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,18:32:50:0.360:2	0/1:33,19:33:52:0.365:2	0/1:0,17:32:17:1.00:2	./.	./.	./.	0/1:46,74:32:120:0.617:2	./.	./.	0/1:34,50:33:84:0.595:2	./.
chr1	44058265	rs3828151	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,8:32:11:0.727:2	./.	0/1:0,2:32:2:1.00:2	0/1:9,12:31:21:0.571:2	0/1:19,15:31:34:0.441:2	0/1:11,8:30:19:0.421:2	0/1:11,13:31:24:0.542:2	0/1:7,14:30:21:0.667:2	./.	0/1:12,11:31:23:0.478:2	./.
chr1	44069850	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,40:33:69:0.580:2
chr1	44070631	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.
chr1	44071221	rs631248	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,151:29:152:0.993:2	0/1:2,95:30:97:0.979:2	0/1:0,36:29:36:1.00:2	0/1:0,185:29:185:1.00:2	0/1:1,177:29:179:0.994:2	0/1:0,180:29:181:1.00:2	0/1:1,190:29:192:0.995:2	0/1:114,72:29:187:0.387:2	./.	0/1:106,78:30:184:0.424:2	0/1:1,173:30:176:0.994:2
chr1	44072018	rs1065772	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,22:33:42:0.524:2	0/1:16,8:32:24:0.333:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	0/1:1,38:32:39:0.974:2	./.	./.	0/1:22,12:32:34:0.353:2	0/1:24,25:31:49:0.510:2
chr1	44072066	rs10890266	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,11:31:23:0.478:2	0/1:12,9:32:21:0.429:2	./.	./.	./.	./.	0/1:2,31:32:33:0.939:2	./.	./.	0/1:16,5:33:21:0.238:2	0/1:24,18:32:42:0.429:2
chr1	44083507	rs641365	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,135:30:136:0.993:2	0/1:0,96:29:96:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,171:30:171:1.00:2	0/1:0,169:30:171:1.00:2	0/1:0,181:30:181:1.00:2	0/1:102,79:30:181:0.436:2	./.	0/1:82,76:30:158:0.481:2	0/1:1,171:29:172:0.994:2
chr1	44083519	rs641351	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:31:126:0.992:2	0/1:0,86:30:86:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,176:30:177:1.00:2	0/1:0,174:30:174:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,185:31:186:1.00:2	0/1:103,79:30:182:0.434:2	./.	0/1:89,82:31:171:0.480:2	0/1:1,177:30:179:0.994:2
chr1	44084739	rs1143701	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:30:61:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,117:30:117:1.00:2	0/1:63,39:31:103:0.382:2	./.	0/1:62,33:31:95:0.347:2	0/1:1,54:31:55:0.982:2
chr1	44086831	rs1143702	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,155:32:157:0.987:2	0/1:0,112:32:112:1.00:2	0/1:0,31:31:31:1.00:2	0/1:112,80:31:192:0.417:2	0/1:114,82:31:196:0.418:2	0/1:94,97:30:191:0.508:2	0/1:1,190:31:191:0.995:2	./.	./.	0/1:86,82:32:169:0.488:2	0/1:0,172:32:172:1.00:2
chr1	44128568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	44128758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:32:49:0.061:2	./.	./.	./.	./.	./.
chr1	44133496	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.
chr1	44137257	rs586339	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,68:30:68:1.00:2	0/1:1,62:32:63:0.984:2	0/1:58,40:31:98:0.408:2	./.	0/1:31,25:31:56:0.446:2	0/1:0,89:32:89:1.00:2
chr1	44169784	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.
chr1	44202061	rs147330005	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:33:62:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr1	44290530	rs37458	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,12:30:37:0.324:2	0/1:5,8:28:13:0.615:2	./.	0/1:14,20:30:34:0.588:2	0/1:2,16:29:18:0.889:2	0/1:17,17:30:34:0.500:2	0/1:13,15:32:28:0.536:2	./.	0/1:21,9:29:30:0.300:2	0/1:5,13:29:18:0.722:2	0/1:33,22:31:55:0.400:2
chr1	44401384	rs2242637	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:30:49:0.980:2	0/1:0,36:30:36:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,59:30:59:1.00:2	0/1:2,82:30:84:0.976:2	0/1:2,107:30:109:0.982:2	0/1:0,93:30:93:1.00:2	0/1:77,36:29:113:0.319:2	0/1:0,82:31:82:1.00:2	0/1:1,64:31:65:0.985:2	0/1:0,80:30:80:1.00:2
chr1	44415415	rs2240447	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,23:31:23:1.00:2	0/1:1,139:31:140:0.993:2	0/1:0,174:31:174:1.00:2	0/1:81,60:31:141:0.426:2	0/1:1,162:31:163:0.994:2	0/1:107,87:31:194:0.448:2	0/1:66,61:32:127:0.480:2	0/1:3,108:32:111:0.973:2	0/1:0,116:31:116:1.00:2
chr1	44422622	rs17402858	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,33:32:71:0.465:2
chr1	44423187	rs146216435	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,79:31:185:0.427:2	./.	./.	./.	./.	./.
chr1	44437389	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:30:21:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr1	44442508	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.
chr1	44442521	rs12410334	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:1,66:33:67:0.985:2	0/1:0,10:32:10:1.00:2	0/1:3,86:33:89:0.966:2	0/1:1,98:32:101:0.990:2	0/1:51,49:32:100:0.490:2	0/1:0,96:32:96:1.00:2	0/1:66,49:32:115:0.426:2	0/1:43,47:33:90:0.522:2	0/1:0,65:33:65:1.00:2	0/1:0,87:32:87:1.00:2
chr1	44447584	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:27:65:0.400:2
chr1	44450686	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,6:22:54:0.111:2	./.	0/1:50,3:34:53:0.057:2	./.	./.	./.
chr1	44461822	rs2301983	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:29:42:0.476:2	./.
chr1	44467987	rs61733181	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,96:31:194:0.495:2	./.	./.	./.
chr1	44468235	rs2248829	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:30:99:0.455:2	./.	./.	./.	./.	./.
chr1	44474083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.	./.	./.
chr1	44474199	rs369079873	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2
chr1	44595047	rs11210969	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,95:32:95:1.00:2	0/1:44,28:31:72:0.389:2	0/1:39,46:31:85:0.541:2	./.	./.	0/1:34,43:32:77:0.558:2	./.	./.
chr1	44595113	rs2429051	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,57:31:58:0.983:2	0/1:0,46:32:46:1.00:2	0/1:0,11:32:11:1.00:2	0/1:1,67:32:68:0.985:2	0/1:1,48:31:49:0.980:2	0/1:30,38:31:69:0.559:2	0/1:26,36:32:62:0.581:2	0/1:44,30:31:74:0.405:2	0/1:32,36:32:68:0.529:2	0/1:0,53:31:53:1.00:2	0/1:26,40:32:66:0.606:2
chr1	44595410	rs2485652	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:32:13:1.00:2	0/1:1,19:31:20:0.950:2	./.	./.	0/1:10,4:30:14:0.286:2	./.	0/1:5,3:33:8:0.375:2	0/1:11,8:30:19:0.421:2	./.	0/1:0,8:31:8:1.00:2	./.
chr1	44595426	rs2429050	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:33:15:1.00:2	0/1:0,17:31:17:1.00:2	./.	./.	0/1:6,5:32:11:0.455:2	./.	0/1:6,3:33:9:0.333:2	0/1:11,8:29:19:0.421:2	./.	0/1:0,7:32:7:1.00:2	./.
chr1	44596217	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.	./.
chr1	44788398	rs161721	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,102:31:102:1.00:2	0/1:1,101:32:102:0.990:2	0/1:0,106:32:106:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,83:32:83:1.00:2
chr1	44878004	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:33:169:0.036:2
chr1	45098023	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,4:31:176:0.023:2	./.	./.	./.	./.	./.	./.
chr1	45111031	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,54:30:111:0.486:2	./.	./.	./.
chr1	45111156	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr1	45163890	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.
chr1	45190800	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.
chr1	45218849	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,53:32:132:0.402:2	./.	./.	./.	./.	./.
chr1	45218895	rs3795713	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,40:32:98:0.408:2	0/1:39,27:32:66:0.409:2	./.	./.	./.	0/1:70,67:31:137:0.489:2	0/1:96,97:31:193:0.503:2	./.	./.	0/1:67,46:32:114:0.407:2	./.
chr1	45221622	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2
chr1	45224901	rs7524294	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,54:31:130:0.415:2	./.	./.	./.	./.	./.	./.
chr1	45224998	rs4342887	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,37:32:69:0.536:2	0/1:35,17:33:52:0.327:2	./.	./.	./.	./.	0/1:77,84:32:161:0.522:2	./.	./.	0/1:41,32:32:73:0.438:2	./.
chr1	45226084	rs1140279	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,22:31:37:0.595:2	0/1:19,14:33:33:0.424:2	./.	./.	./.	./.	0/1:36,36:32:72:0.500:2	./.	./.	0/1:40,22:32:62:0.355:2	./.
chr1	45241285	rs12120833	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,19:31:46:0.413:2	0/1:30,19:31:49:0.388:2	./.	./.	./.	./.	0/1:64,42:32:106:0.396:2	./.	./.	0/1:42,43:32:85:0.506:2	./.
chr1	45269333	rs17886354	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,93:31:95:0.979:2	./.	./.
chr1	45269690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.
chr1	45270024	rs11211036	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,48:29:87:0.552:2	0/1:24,23:29:47:0.489:2	./.	./.	./.	./.	0/1:47,44:29:91:0.484:2	./.	./.	0/1:38,23:27:61:0.377:2	./.
chr1	45270034	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:30:113:0.036:2
chr1	45272048	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	45272321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:29:22:0.182:2	./.
chr1	45276242	rs183942444	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,92:31:190:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr1	45288989	rs201010330	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.	./.	./.	./.	./.
chr1	45292866	rs2295996	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,21:30:39:0.538:2	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	0/1:18,21:31:39:0.538:2
chr1	45293518	rs7525308	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,24:34:58:0.414:2	0/1:19,22:33:41:0.537:2	./.	./.	0/1:40,34:32:74:0.459:2	0/1:32,28:32:60:0.467:2	0/1:46,44:32:90:0.489:2	./.	0/1:0,46:32:46:1.00:2	0/1:39,26:32:65:0.400:2	0/1:35,21:33:56:0.375:2
chr1	45293752	rs2295997	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,9:34:31:0.290:2	0/1:13,9:32:22:0.409:2	./.	./.	./.	./.	0/1:37,24:33:61:0.393:2	./.	./.	0/1:17,15:32:32:0.469:2	./.
chr1	45307694	rs45573433	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,29:30:61:0.475:2	./.	./.	./.	./.	./.	./.	./.
chr1	45444038	rs11556200	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,28:32:53:0.528:2	0/1:14,14:33:28:0.500:2	./.	./.	./.	0/1:37,26:31:63:0.413:2	0/1:0,52:32:52:1.00:2	0/1:42,32:31:74:0.432:2	./.	0/1:26,19:33:45:0.422:2	./.
chr1	45469155	rs11548990	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,15:32:18:0.833:2	0/1:54,56:30:110:0.509:2	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.
chr1	45469161	rs113451625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,55:30:119:0.466:2	./.	./.	./.	./.	./.
chr1	45469176	rs12749251	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,37:31:84:0.440:2	0/1:24,34:31:58:0.586:2	./.	./.	./.	./.	0/1:85,65:31:150:0.433:2	./.	./.	0/1:49,42:31:91:0.462:2	./.
chr1	45469586	rs41312020	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:28:8:0.500:2	0/1:22,44:30:66:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr1	45474008	rs7541207	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:74,78:32:152:0.513:2	0/1:43,33:32:76:0.434:2	./.	./.	./.	./.	0/1:3,122:32:125:0.976:2	0/1:103,69:32:172:0.401:2	./.	0/1:74,71:32:145:0.490:2	./.
chr1	45475278	rs61741088	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,41:31:95:0.432:2	./.	./.	./.	./.	./.
chr1	45479709	rs2228084	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,10:30:25:0.400:2	0/1:96,82:30:179:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr1	45504720	rs7551698	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,12:27:32:0.375:2	0/1:0,25:28:25:1.00:2	0/1:15,14:30:29:0.483:2	./.	./.	0/1:1,23:30:24:0.958:2	0/1:22,11:28:33:0.333:2	0/1:0,28:28:28:1.00:2
chr1	45553712	rs116809634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,69:30:143:0.483:2	./.	./.	./.	./.	./.	./.
chr1	45671966	rs4454584	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,8:32:19:0.421:2	./.	0/1:0,3:31:3:1.00:2	0/1:5,4:32:9:0.444:2	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.
chr1	45794015	rs56015816	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:32:101:0.436:2	./.	./.	./.	./.	./.
chr1	45797505	rs3219489	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:31:24:0.292:2	0/1:1,4:33:5:0.800:2	./.	./.	./.	0/1:7,10:29:17:0.588:2	0/1:13,11:32:24:0.458:2	0/1:19,17:32:36:0.472:2	./.	0/1:13,11:31:24:0.458:2	0/1:9,7:32:16:0.438:2
chr1	45797707	rs147718169	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:32:78:0.436:2
chr1	45805566	rs3219468	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:2,35:32:37:0.946:2	0/1:0,8:32:8:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,105:31:106:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,114:31:114:1.00:2
chr1	45806772	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	45808766	rs201599186	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,8:19:109:0.073:2
chr1	45808863	rs9429157	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:30:55:0.564:2	./.	./.	./.	0/1:20,14:29:34:0.412:2	./.
chr1	45809035	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.
chr1	45810923	rs3893383	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:33:28:0.429:2	0/1:7,6:33:13:0.462:2	./.	./.	./.	0/1:15,10:32:25:0.400:2	0/1:19,11:32:30:0.367:2	./.	./.	./.	./.
chr1	45811136	rs74826378	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,47:30:85:0.553:2	./.	./.	./.	./.	./.
chr1	45887487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:103:0.039:2	./.	./.
chr1	45965100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	./.	./.	./.	./.	./.
chr1	45973124	rs6662272	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,69:32:150:0.460:2	./.	./.	./.	./.	./.
chr1	45973928	rs2275276	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:29:67:0.552:2	0/1:26,17:30:43:0.395:2	0/1:3,9:29:12:0.750:2	0/1:3,63:28:66:0.955:2	0/1:58,19:26:77:0.247:2	0/1:36,39:28:75:0.520:2	./.	0/1:60,45:28:106:0.429:2	0/1:0,59:29:59:1.00:2	0/1:45,27:27:72:0.375:2	0/1:42,40:29:82:0.488:2
chr1	45981331	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.
chr1	45981334	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.
chr1	45981381	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.
chr1	46027474	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46032311	rs2229540	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,52:32:92:0.565:2	./.	./.	./.	./.	./.	./.
chr1	46032543	rs41269113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,15:32:42:0.357:2	./.	./.	./.	./.	./.
chr1	46066075	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr1	46072197	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.
chr1	46073489	rs2230657	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,21:32:48:0.438:2	0/1:12,15:32:27:0.556:2	0/1:13,3:31:16:0.188:2	0/1:0,78:30:78:1.00:2	0/1:24,32:30:56:0.571:2	0/1:29,30:30:59:0.508:2	./.	0/1:46,33:31:79:0.418:2	0/1:1,74:31:75:0.987:2	0/1:29,23:30:52:0.442:2	./.
chr1	46073597	rs76379164	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:88,4:35:92:0.043:2	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	0/1:116,10:30:126:0.079:2	./.	0/1:101,5:30:106:0.047:2	0/1:98,6:32:104:0.058:2	0/1:130,7:31:138:0.051:2
chr1	46073618	rs200936475	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:112,10:28:122:0.082:2	0/1:66,7:27:73:0.096:2	./.	0/1:160,12:27:172:0.070:2	0/1:104,16:30:120:0.133:2	0/1:133,12:26:145:0.083:2	0/1:146,23:30:169:0.136:2	0/1:177,15:28:192:0.078:2	0/1:124,17:29:141:0.121:2	0/1:123,15:28:138:0.109:2	0/1:146,18:27:164:0.110:2
chr1	46073697	rs200497808	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,7:28:140:0.050:2	0/1:63,10:28:73:0.137:2	./.	0/1:138,15:29:154:0.098:2	0/1:118,23:28:141:0.163:2	0/1:143,21:28:164:0.128:2	0/1:137,20:29:157:0.127:2	0/1:147,16:26:163:0.098:2	0/1:146,24:28:170:0.141:2	0/1:144,17:28:161:0.106:2	0/1:134,23:29:157:0.146:2
chr1	46073720	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:58,5:31:63:0.079:2	./.	0/1:123,4:32:127:0.031:2	0/1:115,9:29:124:0.073:2	0/1:130,9:30:139:0.065:2	./.	0/1:151,6:29:157:0.038:2	0/1:141,11:30:152:0.072:2	0/1:138,4:32:142:0.028:2	0/1:126,9:30:135:0.067:2
chr1	46078854	rs2230658	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,12:30:44:0.273:2	0/1:19,4:30:23:0.174:2	./.	0/1:0,28:29:28:1.00:2	0/1:0,9:31:9:1.00:2	0/1:20,14:29:34:0.412:2	./.	0/1:19,10:28:29:0.345:2	0/1:0,22:30:22:1.00:2	0/1:0,30:28:30:1.00:2	./.
chr1	46078884	rs2230659	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,12:32:51:0.235:2	0/1:22,5:32:27:0.185:2	0/1:4,4:32:8:0.500:2	0/1:0,47:33:47:1.00:2	0/1:0,16:32:16:1.00:2	0/1:32,26:32:58:0.448:2	./.	0/1:22,17:33:39:0.436:2	0/1:0,38:33:38:1.00:2	0/1:0,47:32:47:1.00:2	./.
chr1	46080819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.
chr1	46080996	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.
chr1	46082387	rs200577640	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,71:28:145:0.490:2
chr1	46086077	rs3014246	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,11:31:25:0.440:2	0/1:11,5:29:16:0.313:2	./.	0/1:1,32:30:33:0.970:2	0/1:0,21:30:21:1.00:2	0/1:4,12:30:17:0.750:2	./.	0/1:16,7:32:23:0.304:2	0/1:0,18:31:18:1.00:2	0/1:0,25:29:25:1.00:2	./.
chr1	46086664	rs374329461	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,43:31:72:0.597:2	0/1:26,26:31:52:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46087577	rs3014242	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,17:32:29:0.586:2	0/1:17,4:31:21:0.190:2	./.	0/1:0,36:32:36:1.00:2	0/1:0,28:32:28:1.00:2	0/1:22,13:32:35:0.371:2	./.	0/1:28,22:32:50:0.440:2	0/1:0,42:33:42:1.00:2	0/1:0,23:33:23:1.00:2	./.
chr1	46094027	rs1250	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,7:31:27:0.259:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	0/1:22,17:32:39:0.436:2	0/1:0,43:33:43:1.00:2	0/1:37,19:33:56:0.339:2	./.	./.	0/1:0,66:32:66:1.00:2
chr1	46095272	rs1135812	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,11:33:13:0.846:2	./.	./.	0/1:72,73:32:145:0.503:2	0/1:0,103:32:103:1.00:2	0/1:77,75:33:152:0.493:2	./.	./.	0/1:2,124:33:126:0.984:2
chr1	46106052	rs36067922	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,58:30:148:0.392:2	./.	./.	./.	./.	./.
chr1	46108125	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr1	46195375	rs28375469	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	0/1:35,47:33:82:0.573:2	0/1:2,53:34:55:0.964:2	0/1:49,42:33:91:0.462:2	./.	./.	0/1:1,125:34:126:0.992:2
chr1	46290105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.
chr1	46383199	rs183642849	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,44:32:91:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr1	46476570	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46476587	rs11211247	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,33:32:33:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,37:32:37:1.00:2	0/1:23,25:33:48:0.521:2	0/1:18,23:32:41:0.561:2	0/1:0,48:32:48:1.00:2
chr1	46488600	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.
chr1	46493460	rs1707336	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,27:32:66:0.409:2	0/1:29,15:32:44:0.341:2	0/1:6,6:34:12:0.500:2	0/1:0,80:33:80:1.00:2	./.	./.	./.	0/1:52,34:32:86:0.395:2	0/1:57,59:33:116:0.509:2	0/1:47,37:33:84:0.440:2	./.
chr1	46495155	rs142312565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,47:30:114:0.412:2	./.	./.	./.	./.	./.
chr1	46496709	rs925524	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,34:27:65:0.523:2	0/1:19,20:28:39:0.513:2	0/1:7,5:30:12:0.417:2	0/1:0,99:28:99:1.00:2	0/1:0,123:28:123:1.00:2	./.	./.	0/1:68,63:29:131:0.481:2	0/1:0,87:30:87:1.00:2	0/1:0,72:28:72:1.00:2	./.
chr1	46497964	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46498375	rs1622208	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,48:32:100:0.480:2	0/1:35,30:32:65:0.462:2	0/1:5,8:32:13:0.615:2	0/1:0,153:32:153:1.00:2	0/1:1,168:32:170:0.994:2	0/1:91,91:31:182:0.500:2	./.	0/1:84,104:32:188:0.553:2	0/1:2,163:33:165:0.988:2	0/1:0,113:31:113:1.00:2	./.
chr1	46499557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2
chr1	46500613	rs17855317	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,125:32:128:0.977:2	./.	./.	./.	0/1:60,62:32:122:0.508:2	0/1:45,41:32:86:0.477:2	./.
chr1	46500993	rs1052610	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,29:32:49:0.592:2	./.	./.	./.	./.	./.	0/1:17,23:30:40:0.575:2	./.
chr1	46501270	rs36097855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:31:70:0.471:2	./.	./.
chr1	46501359	rs34070850	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.
chr1	46509396	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.
chr1	46521517	rs785468	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,62:30:144:0.434:2	0/1:60,47:31:107:0.439:2	0/1:18,7:30:25:0.280:2	0/1:4,108:30:113:0.964:2	0/1:4,105:29:109:0.963:2	./.	./.	0/1:118,61:29:179:0.341:2	0/1:0,176:30:176:1.00:2	0/1:3,127:29:130:0.977:2	./.
chr1	46521559	rs785467	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,51:32:123:0.415:2	0/1:54,45:32:99:0.455:2	0/1:9,7:31:16:0.438:2	0/1:2,99:31:101:0.980:2	0/1:3,73:31:76:0.961:2	0/1:97,69:31:166:0.416:2	./.	0/1:84,49:31:133:0.368:2	0/1:0,138:32:138:1.00:2	0/1:2,112:31:115:0.982:2	./.
chr1	46546364	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:33:87:0.069:2	./.
chr1	46655158	rs6659553	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,3:33:3:1.00:2	0/1:2,43:32:45:0.956:2	0/1:0,24:32:24:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,31:32:31:1.00:2	0/1:2,40:31:42:0.952:2
chr1	46660295	rs2292487	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	./.	./.	0/1:0,129:32:129:1.00:2	./.	./.	0/1:83,59:32:143:0.415:2	0/1:70,58:32:128:0.453:2	0/1:1,135:32:136:0.993:2
chr1	46669276	rs62620991	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:33:24:0.375:2	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46743770	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.	./.
chr1	46743900	rs1048771	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,41:31:86:0.477:2
chr1	46746164	rs11542623	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,42:32:101:0.416:2
chr1	46774783	rs41292543	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,60:32:126:0.476:2
chr1	46775912	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	./.	./.
chr1	46782192	rs17102133	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,52:34:119:0.437:2	./.	./.
chr1	46782281	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:33:193:0.026:2	./.	./.
chr1	46806550	rs41293277	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,20:32:54:0.370:2	0/1:8,21:31:29:0.724:2	./.	./.	0/1:0,88:30:88:1.00:2	./.	./.	0/1:77,62:31:140:0.446:2	./.	./.	./.
chr1	46810530	rs3737744	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:80,70:33:151:0.467:2	0/1:61,60:32:121:0.496:2	./.	0/1:99,95:33:194:0.490:2	./.	./.	0/1:89,106:32:195:0.544:2	0/1:121,77:32:198:0.389:2	0/1:0,177:33:177:1.00:2	0/1:54,87:31:141:0.617:2	./.
chr1	46810670	rs17361763	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:67,51:33:118:0.432:2	0/1:36,28:33:64:0.438:2	./.	./.	0/1:2,164:31:166:0.988:2	./.	./.	0/1:89,74:33:163:0.454:2	./.	./.	./.
chr1	46827456	rs9865	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,97:33:183:0.530:2
chr1	46827485	rs1053624	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,78:30:169:0.462:2	0/1:46,39:32:85:0.459:2	./.	0/1:134,6:30:140:0.043:2	0/1:1,136:29:137:0.993:2	./.	./.	0/1:89,52:29:141:0.369:2	./.	./.	./.
chr1	46870761	rs324420	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:31:21:1.00:2	0/1:69,105:32:174:0.603:2	./.	0/1:54,102:31:156:0.654:2	0/1:98,101:32:199:0.508:2	./.	./.	0/1:63,57:32:120:0.475:2	0/1:55,67:32:122:0.549:2
chr1	46871746	rs41305628	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.
chr1	46871986	rs324419	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:29:109:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,138:30:138:1.00:2	0/1:0,180:30:180:1.00:2	0/1:0,149:30:149:1.00:2	0/1:2,147:31:149:0.987:2	0/1:1,170:30:171:0.994:2	0/1:2,126:31:128:0.984:2	0/1:0,99:31:99:1.00:2	0/1:0,78:30:78:1.00:2
chr1	46877829	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,88:33:186:0.473:2	./.	./.
chr1	46878769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:71:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46976717	rs12045245	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:32:11:0.636:2	0/1:33,40:31:73:0.548:2	./.	./.	./.	./.	./.	./.	0/1:46,43:33:89:0.483:2
chr1	46976837	rs1886116	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,38:31:85:0.447:2	0/1:2,88:31:90:0.978:2	./.	./.	./.	./.	0/1:15,43:32:58:0.741:2	./.
chr1	47014905	rs191194559	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:31:163:0.037:2	./.	./.	./.
chr1	47016769	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,74:31:171:0.435:2
chr1	47078637	rs4660947	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:26:39:1.00:2	0/1:0,17:26:17:1.00:2	0/1:0,8:30:8:1.00:2	0/1:23,29:28:52:0.558:2	./.	0/1:0,38:28:38:1.00:2	./.	0/1:47,24:27:71:0.338:2	0/1:0,55:29:55:1.00:2	0/1:23,14:26:37:0.378:2	0/1:12,20:27:32:0.625:2
chr1	47080665	rs11211328	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:22,17:31:39:0.436:2	./.	0/1:26,10:31:36:0.278:2	./.	0/1:30,14:31:44:0.318:2	0/1:24,21:33:45:0.467:2	0/1:18,11:32:29:0.379:2	0/1:26,24:31:50:0.480:2
chr1	47080679	rs6671527	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,9:32:9:1.00:2	0/1:29,17:31:46:0.370:2	./.	0/1:0,35:31:35:1.00:2	./.	0/1:34,14:32:48:0.292:2	0/1:0,35:33:35:1.00:2	0/1:20,13:33:33:0.394:2	0/1:28,23:32:51:0.451:2
chr1	47080741	rs12029680	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:27,30:31:57:0.526:2	./.	0/1:0,62:31:62:1.00:2	./.	0/1:37,15:31:52:0.288:2	0/1:27,31:32:58:0.534:2	0/1:26,19:31:45:0.422:2	0/1:31,30:30:61:0.492:2
chr1	47133811	rs11211337	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2
chr1	47138819	rs614486	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,24:30:54:0.444:2	0/1:17,16:32:33:0.485:2	./.	./.	./.	0/1:45,45:32:90:0.500:2	./.	0/1:42,42:31:84:0.500:2	0/1:0,76:33:76:1.00:2	0/1:19,27:32:46:0.587:2	0/1:2,66:31:68:0.971:2
chr1	47139103	rs1025806	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:18,18:32:36:0.500:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	./.	0/1:46,27:32:73:0.370:2	0/1:0,53:32:54:1.00:2	0/1:18,21:32:39:0.538:2	0/1:0,54:32:54:1.00:2
chr1	47154035	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:32:196:0.026:2	./.
chr1	47183605	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:29:55:0.400:2	./.	./.	./.	./.	./.
chr1	47279175	rs4646487	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	0/1:41,35:31:76:0.461:2	./.	./.	./.	0/1:38,51:33:89:0.573:2	./.	./.
chr1	47279898	rs45446505	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:29:45:0.422:2	./.	./.	./.	./.	./.
chr1	47395973	rs1126743	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,69:32:69:1.00:2	0/1:12,7:31:19:0.368:2	0/1:1,109:31:110:0.991:2	0/1:80,61:31:141:0.433:2	0/1:1,107:31:108:0.991:2	0/1:3,104:31:107:0.972:2	0/1:2,120:31:122:0.984:2	0/1:59,55:32:114:0.482:2	0/1:0,101:32:101:1.00:2	0/1:77,65:31:142:0.458:2
chr1	47398496	rs1126742	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:34:11:0.364:2	./.	0/1:74,34:32:108:0.315:2	./.	./.	./.	0/1:64,32:32:96:0.333:2	./.	0/1:59,46:31:105:0.438:2
chr1	47399629	rs150346297	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,58:32:141:0.411:2	./.	./.
chr1	47399879	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	47399967	rs28451040	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,11:30:38:0.289:2	./.	0/1:127,51:31:178:0.287:2	./.	0/1:181,4:32:185:0.022:2	0/1:163,31:31:194:0.160:2	0/1:116,72:32:188:0.383:2	0/1:144,39:31:183:0.213:2	0/1:105,68:32:173:0.393:2
chr1	47400195	rs41300339	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,9:29:143:0.063:2	./.	./.
chr1	47401277	rs62618709	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,7:31:196:0.036:2	0/1:185,8:30:193:0.041:2	./.	./.	0/1:189,6:32:195:0.031:2	./.	./.
chr1	47402947	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.	./.	./.
chr1	47546321	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,39:32:147:0.265:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	47548113	rs200076743	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:180,17:30:197:0.086:2	0/1:183,10:31:193:0.052:2	./.	0/1:183,9:30:192:0.047:2	0/1:189,6:31:195:0.031:2	0/1:191,5:28:196:0.026:2	0/1:190,10:29:200:0.050:2	0/1:185,13:29:198:0.066:2	0/1:187,7:30:194:0.036:2	0/1:182,13:30:195:0.067:2	0/1:184,5:31:190:0.026:2
chr1	47560305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.
chr1	47571830	rs151236717	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:32:190:0.537:2	./.	./.	./.	./.	./.
chr1	47571862	rs138601503	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,51:33:174:0.293:2	./.	./.	./.	./.	./.
chr1	47571902	rs4926802	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,41:27:158:0.259:2	0/1:102,38:27:140:0.271:2	./.	0/1:94,55:27:149:0.369:2	0/1:95,51:29:146:0.349:2	0/1:87,52:29:139:0.374:2	./.
chr1	47571905	rs28463559	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,41:30:156:0.263:2	0/1:103,37:30:140:0.264:2	./.	0/1:94,54:30:148:0.365:2	0/1:98,50:32:148:0.338:2	0/1:86,51:30:137:0.372:2	./.
chr1	47581186	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.
chr1	47582353	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:34:174:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	47603256	rs141897799	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,76:29:141:0.539:2	./.	./.	./.	./.	./.
chr1	47603312	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.	./.
chr1	47607281	rs12564525	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,23:31:67:0.343:2	0/1:3,81:31:84:0.964:2	0/1:93,4:33:97:0.041:2	./.	0/1:62,63:33:125:0.504:2	./.	./.
chr1	47607785	rs2056900	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,48:32:116:0.414:2	0/1:49,41:32:90:0.456:2	./.	./.	0/1:42,55:33:97:0.567:2	./.	./.
chr1	47607827	rs147010308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,62:30:138:0.449:2	./.	./.	./.	./.	./.
chr1	47607851	rs2056899	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,46:31:95:0.484:2	0/1:19,33:32:52:0.635:2	0/1:6,5:27:11:0.455:2	./.	0/1:99,79:31:178:0.444:2	0/1:1,144:30:145:0.993:2	./.	0/1:0,186:31:186:1.00:2	0/1:0,162:32:162:1.00:2	0/1:38,66:32:104:0.635:2	0/1:0,131:31:131:1.00:2
chr1	47608983	rs113777592	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,75:31:193:0.389:2	0/1:118,78:31:196:0.398:2	./.	./.	0/1:110,78:31:188:0.415:2	./.	./.
chr1	47609477	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.
chr1	47609489	rs10789501	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,77:30:180:0.428:2	0/1:3,178:30:182:0.983:2	./.	0/1:94,97:30:191:0.508:2	0/1:2,152:31:154:0.987:2	0/1:88,80:31:168:0.476:2	./.
chr1	47610065	rs149718343	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,48:29:113:0.425:2	./.	./.	./.	0/1:98,83:31:181:0.459:2	./.	./.
chr1	47610102	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,5:32:109:0.046:2	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:32:186:0.027:2	0/1:183,9:34:192:0.047:2
chr1	47610117	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,8:32:190:0.042:2	0/1:116,5:32:121:0.041:2	./.	0/1:186,6:28:192:0.031:2	0/1:141,7:30:148:0.047:2	0/1:187,6:31:193:0.031:2	0/1:185,12:31:197:0.061:2	0/1:183,14:31:197:0.071:2	0/1:176,16:32:192:0.083:2	0/1:183,9:31:192:0.047:2	0/1:185,7:31:192:0.036:2
chr1	47610293	rs968322	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,7:32:64:0.109:2	./.	0/1:160,25:31:185:0.135:2	./.	./.	0/1:141,57:32:198:0.288:2	0/1:108,82:32:190:0.432:2	0/1:112,63:31:175:0.360:2	0/1:155,21:31:176:0.119:2
chr1	47611598	rs2405599	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,67:33:142:0.472:2	0/1:0,141:33:141:1.00:2	./.	./.	0/1:96,68:34:164:0.415:2	./.	./.
chr1	47614434	rs4926600	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,61:30:156:0.391:2	./.	./.	./.	0/1:75,57:31:132:0.432:2	./.	./.
chr1	47653053	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:28:190:0.026:2	./.	./.	./.
chr1	47655599	rs11801079	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,9:31:11:0.818:2	./.	./.	./.	./.	./.
chr1	47685455	rs927462	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,2:34:2:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,15:29:15:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,4:35:4:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,2:32:2:1.00:2
chr1	47685569	rs144117146	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.
chr1	47716889	rs146387723	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,41:31:83:0.494:2	./.	./.	./.	./.	./.
chr1	47717189	rs2758735	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,42:30:83:0.506:2	0/1:32,36:28:69:0.529:2	0/1:4,18:29:22:0.818:2	0/1:47,52:29:99:0.525:2	0/1:0,85:29:85:1.00:2	0/1:48,69:29:117:0.590:2	0/1:2,75:29:77:0.974:2	0/1:67,41:29:108:0.380:2	0/1:88,59:30:147:0.401:2	0/1:49,34:28:83:0.410:2	0/1:72,55:29:127:0.433:2
chr1	47717390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.
chr1	47726087	rs13376679	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:95,103:30:198:0.520:2	0/1:72,63:30:135:0.467:2	./.	0/1:125,74:30:199:0.372:2	./.	0/1:125,72:30:197:0.365:2	./.	0/1:109,85:30:194:0.438:2	./.	./.	0/1:92,95:29:187:0.508:2
chr1	47746678	rs10789505	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,9:30:26:0.346:2	./.	./.	./.	./.	./.	0/1:90,100:31:190:0.526:2	0/1:63,78:30:141:0.553:2	./.
chr1	47767914	rs3125630	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,27:31:67:0.403:2	0/1:24,12:31:36:0.333:2	./.	0/1:40,29:30:69:0.420:2	./.	0/1:40,18:29:58:0.310:2	./.	0/1:37,20:30:58:0.351:2	0/1:37,28:31:65:0.431:2	0/1:29,40:30:69:0.580:2	0/1:24,19:30:43:0.442:2
chr1	47799639	rs7543016	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,8:31:19:0.421:2	./.	./.	0/1:17,20:30:37:0.541:2	./.	0/1:12,18:29:30:0.600:2	./.	0/1:16,15:30:31:0.484:2	0/1:13,8:29:21:0.381:2	0/1:7,10:31:17:0.588:2	0/1:3,5:29:8:0.625:2
chr1	47834209	rs35687416	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:31:15:1.00:2	./.	0/1:46,24:31:70:0.343:2	./.	./.	0/1:55,79:31:134:0.590:2	./.	./.	./.
chr1	47842431	rs3125648	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,80:33:80:1.00:2
chr1	47882497	rs34082359	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	47883019	rs6666370	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:29:5:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:0,6:30:6:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,2:30:2:1.00:2
chr1	47883024	rs2820969	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:26:5:1.00:2	./.	./.	0/1:0,5:34:5:1.00:2	0/1:0,3:33:3:1.00:2	0/1:7,3:29:11:0.300:2	0/1:0,7:29:7:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,3:32:3:1.00:2
chr1	47904203	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:29:128:0.039:2	./.	./.	./.	./.
chr1	47904218	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:31:157:0.032:2	./.	./.	./.	./.
chr1	47905770	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,8:22:34:0.235:2	./.	./.	./.	0/1:22,6:17:28:0.214:2	./.	./.	0/1:24,9:20:33:0.273:2	0/1:34,6:19:40:0.150:2	0/1:44,9:23:53:0.170:2	0/1:45,8:22:53:0.151:2
chr1	47906114	rs72686276	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,9:28:24:0.375:2	./.	./.	./.	./.	0/1:7,13:29:20:0.650:2	./.
chr1	47906338	rs2820966	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:28:5:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,40:32:40:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,63:32:63:1.00:2
chr1	48695081	rs212989	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:96,74:31:170:0.435:2	0/1:56,55:32:111:0.495:2	./.	./.	0/1:109,80:31:189:0.423:2	0/1:96,88:31:184:0.478:2	0/1:188,4:33:192:0.021:2	./.	./.	./.	./.
chr1	48697733	rs212991	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:33:130:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,173:33:173:1.00:2	0/1:1,149:33:150:0.993:2	0/1:0,173:32:173:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,162:33:162:1.00:2	0/1:0,169:33:169:1.00:2	0/1:1,148:33:149:0.993:2	0/1:0,127:32:127:1.00:2
chr1	48697751	rs61997212	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,94:31:179:0.525:2	./.	./.	./.	./.
chr1	48708228	rs850763	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,32:29:62:0.516:2	0/1:18,15:29:33:0.455:2	./.	./.	0/1:54,51:29:105:0.486:2	0/1:36,33:29:69:0.478:2	./.	./.	./.	./.	./.
chr1	48708250	rs78427303	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	0/1:32,48:30:80:0.600:2	0/1:1,91:31:92:0.989:2	0/1:28,37:29:65:0.569:2	./.	./.
chr1	48708278	rs75538709	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	0/1:22,39:31:61:0.639:2	0/1:2,70:31:72:0.972:2	0/1:19,30:31:49:0.612:2	./.	./.
chr1	48713206	rs7535096	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,77:32:154:0.500:2	0/1:89,80:32:169:0.473:2	./.	./.	./.	./.	./.
chr1	48764419	rs1056042	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,78:31:164:0.476:2	0/1:58,41:31:99:0.414:2	./.	./.	./.	0/1:106,75:30:181:0.414:2	0/1:7,131:31:138:0.949:2	0/1:96,77:31:173:0.445:2	0/1:86,92:31:178:0.517:2	0/1:82,77:31:160:0.484:2	./.
chr1	48825355	rs1338314	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:32:45:0.333:2
chr1	48937691	rs2275309	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:30:11:0.636:2	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.
chr1	49224584	rs1128934	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,15:31:15:1.00:2	0/1:0,5:31:5:1.00:2	0/1:3,10:32:13:0.769:2	0/1:0,10:32:10:1.00:2	0/1:1,16:31:17:0.941:2	0/1:8,3:34:11:0.273:2	0/1:0,8:33:8:1.00:2	0/1:0,19:32:19:1.00:2
chr1	49242483	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2	./.	./.	./.
chr1	49511311	rs72895659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,49:30:115:0.426:2	./.	./.	./.	./.	./.
chr1	49511424	rs3934240	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	./.
chr1	50661411	rs2480683	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,47:30:47:1.00:2	0/1:2,32:30:34:0.941:2	0/1:0,66:31:66:1.00:2
chr1	50666515	rs2494876	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,63:31:65:0.969:2	0/1:0,41:32:41:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,95:31:95:1.00:2	0/1:1,97:31:98:0.990:2	0/1:0,114:31:114:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,120:30:120:1.00:2	./.	0/1:0,100:30:100:1.00:2	0/1:0,92:30:92:1.00:2
chr1	51121198	rs11205753	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	./.
chr1	51439777	rs1043141	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2	./.	./.	./.	./.
chr1	51611451	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	./.	./.
chr1	51735729	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.	./.
chr1	51755769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.
chr1	51760147	rs41287288	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,49:32:88:0.557:2	./.	./.	./.
chr1	51767352	rs41287290	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,76:31:77:0.987:2	0/1:0,29:32:29:1.00:2	0/1:12,4:31:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	0/1:50,47:32:97:0.485:2
chr1	51767923	rs201705883	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,5:19:23:0.217:2	./.	./.	0/1:19,8:22:27:0.296:2	./.	./.	0/1:12,4:21:16:0.250:2	0/1:32,7:23:39:0.179:2	./.	./.	./.
chr1	51787853	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,8:21:34:0.235:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,6:24:35:0.171:2	./.
chr1	51787862	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:23:30:0.300:2	0/1:20,4:24:24:0.167:2	./.	./.	./.
chr1	51826921	rs17567	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,56:32:99:0.566:2	0/1:70,82:33:152:0.539:2	0/1:2,119:32:121:0.983:2	0/1:76,66:31:142:0.465:2
chr1	51873951	rs1065754	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:32:22:0.409:2	0/1:86,78:31:164:0.476:2	0/1:87,75:31:162:0.463:2	0/1:71,52:31:123:0.423:2	./.	0/1:0,154:32:154:1.00:2	0/1:82,47:33:129:0.364:2	0/1:0,129:32:129:1.00:2	0/1:89,77:32:166:0.464:2
chr1	51913766	rs116386363	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,53:31:100:0.530:2	./.	./.	./.	./.
chr1	52082881	rs143626823	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,81:32:163:0.497:2	./.	./.
chr1	52231560	rs61739207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,72:32:190:0.379:2
chr1	52264064	rs1770791	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:28,31:32:59:0.525:2	./.	./.	./.	0/1:53,49:33:102:0.480:2
chr1	52266242	rs8375	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:33:117:1.00:2	0/1:0,99:32:99:1.00:2	0/1:13,14:33:27:0.519:2	0/1:104,74:32:178:0.416:2	./.	0/1:0,133:32:133:1.00:2	./.	./.	0/1:81,94:33:175:0.537:2	0/1:0,131:33:131:1.00:2	0/1:96,98:33:194:0.505:2
chr1	52266350	rs2273198	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,43:32:86:0.500:2
chr1	52290984	rs11205896	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:33:110:1.00:2	0/1:2,61:32:63:0.968:2	0/1:5,8:31:13:0.615:2	0/1:72,58:33:130:0.446:2	./.	0/1:2,106:32:108:0.981:2	0/1:54,33:32:87:0.379:2	./.	./.	0/1:0,112:32:113:1.00:2	0/1:82,104:32:186:0.559:2
chr1	52299790	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.	./.
chr1	52306027	rs114314660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,98:31:181:0.541:2	./.	./.	./.	./.	./.
chr1	52344245	rs72901974	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,19:29:68:0.279:2	./.	./.	./.	./.
chr1	52385656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,17:31:133:0.128:2	./.	./.	./.	./.
chr1	52399021	rs2230325	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:29:87:0.425:2
chr1	52498370	rs2809917	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,33:29:77:0.429:2	0/1:48,34:30:82:0.415:2	./.	./.	./.
chr1	52498861	rs2783175	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:31:39:0.564:2	./.	./.	./.
chr1	52499437	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.
chr1	52499489	rs2809916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,30:30:77:0.390:2	./.	./.	./.
chr1	52520747	rs190576327	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,83:30:145:0.572:2	./.	./.	./.	./.	./.	./.
chr1	52703491	rs35385323	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:31:77:0.364:2	./.	./.	./.	./.
chr1	52761590	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.
chr1	52798467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.
chr1	52805850	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.
chr1	52805869	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:33:111:0.036:2	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.
chr1	52805888	rs373520372	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.	./.
chr1	52811752	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.
chr1	52811806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.	./.	./.	./.
chr1	52828384	rs11555349	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:30:62:0.532:2	./.	./.	./.	./.
chr1	52867839	rs3087473	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,23:31:75:0.307:2	./.
chr1	52871361	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:31:198:0.025:2	./.	./.	./.
chr1	52871399	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:31:185:0.027:2	./.	./.	./.
chr1	52991638	rs12123698	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,121:32:122:0.992:2	0/1:0,76:32:76:1.00:2	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	0/1:75,64:32:139:0.460:2	0/1:66,80:34:146:0.548:2	0/1:0,91:33:91:1.00:2	0/1:90,67:32:157:0.427:2
chr1	53068093	rs11205977	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.
chr1	53072454	rs1970951	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,97:32:97:1.00:2	0/1:50,67:32:117:0.573:2	0/1:41,57:31:98:0.582:2	0/1:1,110:32:111:0.991:2	0/1:0,128:32:128:1.00:2	0/1:1,87:33:88:0.989:2	0/1:0,86:32:86:1.00:2	0/1:0,71:31:71:1.00:2
chr1	53099276	rs202139774	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:30:100:0.510:2	./.	./.
chr1	53153432	rs443751	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,183:32:186:0.984:2	0/1:3,113:32:116:0.974:2	0/1:20,25:33:45:0.556:2	0/1:109,75:33:185:0.408:2	0/1:103,90:33:193:0.466:2	./.	0/1:110,82:33:192:0.427:2	0/1:6,180:33:186:0.968:2	./.	./.	./.
chr1	53158524	rs200725979	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,13:23:43:0.302:2	./.	./.	0/1:25,30:20:55:0.545:2	0/1:30,17:18:47:0.362:2	0/1:31,21:20:52:0.404:2	0/1:34,29:17:63:0.460:2	0/1:42,29:16:71:0.408:2	0/1:24,17:12:41:0.415:2	0/1:21,17:19:38:0.447:2	0/1:26,23:19:49:0.469:2
chr1	53250650	rs6588443	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:56,41:31:97:0.423:2	0/1:29,38:31:67:0.567:2	0/1:2,66:31:68:0.971:2	0/1:47,66:32:113:0.584:2	./.	./.	0/1:0,89:32:89:1.00:2	0/1:0,77:31:77:1.00:2
chr1	53287214	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	53320274	rs480299	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:31:91:1.00:2	0/1:3,38:32:41:0.927:2	0/1:0,10:30:10:1.00:2	0/1:48,55:31:103:0.534:2	0/1:36,24:32:60:0.400:2	0/1:43,32:31:75:0.427:2	0/1:40,39:31:79:0.494:2	0/1:1,92:31:93:0.989:2	0/1:0,112:32:112:1.00:2	./.	0/1:56,57:31:113:0.504:2
chr1	53326524	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:31:63:0.476:2	./.	./.	./.
chr1	53333392	rs79762797	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	0/1:35,23:31:58:0.397:2	./.	./.	./.	./.	./.
chr1	53373560	rs111794011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.
chr1	53393083	rs147697594	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.	./.
chr1	53420424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2
chr1	53442376	rs41294530	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,21:32:32:0.656:2	./.	./.	0/1:79,77:31:156:0.494:2	./.	./.	./.	./.	./.
chr1	53527948	rs7513730	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2
chr1	53532545	rs149127843	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,47:29:50:0.940:2	0/1:1,25:30:26:0.962:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	53535478	rs1288386	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:31:74:1.00:2	0/1:50,39:30:89:0.438:2	0/1:38,39:31:77:0.506:2	0/1:31,35:30:66:0.530:2	./.	0/1:50,40:32:90:0.444:2	0/1:0,53:31:53:1.00:2	0/1:29,28:32:57:0.491:2
chr1	53537266	rs1769316	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,109:30:109:1.00:2	0/1:49,55:30:104:0.529:2	0/1:58,67:30:125:0.536:2	0/1:66,41:31:107:0.383:2	./.	0/1:51,52:31:103:0.505:2	0/1:0,71:30:71:1.00:2	0/1:0,78:31:78:1.00:2
chr1	53544289	rs11206087	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:28:31:0.419:2	./.
chr1	53544439	rs1288388	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:1,18:30:19:0.947:2	0/1:3,3:32:6:0.500:2	0/1:2,41:30:43:0.953:2	0/1:25,33:29:58:0.569:2	0/1:23,12:29:35:0.343:2	0/1:25,12:30:37:0.324:2	./.	0/1:25,17:30:42:0.405:2	0/1:12,15:31:27:0.556:2	0/1:6,10:31:16:0.625:2
chr1	53544513	rs12567021	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,19:30:25:0.760:2	./.	./.	./.	./.	./.	./.
chr1	53544578	rs11206088	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,3:34:21:0.143:2	./.	./.	./.	0/1:40,21:31:61:0.344:2	./.	0/1:24,12:33:36:0.333:2	0/1:0,46:32:46:1.00:2	0/1:6,23:33:29:0.793:2	./.	./.
chr1	53544597	rs1288389	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:29:11:1.00:2	0/1:0,8:28:8:1.00:2	0/1:5,3:30:8:0.375:2	0/1:2,44:29:46:0.957:2	0/1:0,47:29:47:1.00:2	0/1:22,30:29:52:0.577:2	0/1:0,31:31:31:1.00:2	0/1:0,33:31:33:1.00:2	0/1:1,19:31:20:0.950:2	0/1:12,17:27:29:0.586:2	0/1:15,9:31:24:0.375:2
chr1	53544666	rs61999355	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2
chr1	53544682	rs368759459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:28:10:0.300:2	./.	./.	./.
chr1	53547800	rs6687909	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,15:32:51:0.294:2
chr1	53547815	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	./.	./.	./.	./.
chr1	53553702	rs1288400	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:29:183:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,188:29:188:1.00:2	0/1:0,180:29:180:1.00:2	0/1:0,181:30:182:1.00:2	0/1:0,184:29:184:1.00:2	0/1:0,183:29:183:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,182:29:183:1.00:2	0/1:0,170:29:170:1.00:2
chr1	53553754	rs1288401	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,158:30:160:0.988:2	0/1:0,103:29:103:1.00:2	0/1:20,12:30:32:0.375:2	0/1:4,138:29:142:0.972:2	0/1:83,59:29:142:0.415:2	0/1:87,73:29:160:0.456:2	0/1:79,40:30:119:0.336:2	./.	0/1:95,61:30:156:0.391:2	0/1:78,79:29:157:0.503:2	0/1:84,60:29:144:0.417:2
chr1	53558270	rs1288406	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:30:59:0.983:2	0/1:0,27:28:27:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,69:30:69:1.00:2	0/1:48,33:29:81:0.407:2	0/1:0,47:28:47:1.00:2	0/1:38,30:29:68:0.441:2	./.	0/1:25,40:30:65:0.615:2	0/1:0,39:29:39:1.00:2	0/1:0,40:28:40:1.00:2
chr1	53558366	rs12129653	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,45:30:66:0.682:2	./.
chr1	53569230	rs114930372	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:31:29:0.448:2	./.	./.
chr1	53580505	rs141274422	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.	./.
chr1	53600072	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,4:29:63:0.063:2	./.	./.	./.	./.	./.	./.
chr1	53600078	rs3737989	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,16:29:48:0.333:2	0/1:21,10:30:31:0.323:2	./.	./.	0/1:31,29:29:60:0.483:2	./.	./.	./.	./.	./.	./.
chr1	53676448	rs1799821	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,28:32:67:0.418:2	0/1:27,21:31:48:0.438:2	./.	./.	0/1:42,31:31:74:0.425:2	0/1:41,32:30:73:0.438:2	./.	0/1:0,56:31:56:1.00:2	./.	0/1:1,52:31:53:0.981:2	./.
chr1	53679096	rs147953465	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,42:29:108:0.393:2
chr1	53679229	rs1799822	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,14:31:43:0.326:2	./.	./.	./.	0/1:27,17:31:44:0.386:2	./.
chr1	53681699	rs1134688	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2	./.	./.	./.	0/1:16,15:29:31:0.484:2	./.
chr1	53683817	rs200743226	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,20:12:181:0.110:2	./.	./.	./.	0/1:105,12:15:117:0.103:2	0/1:137,14:18:153:0.093:2
chr1	53684525	rs436887	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,27:32:69:0.391:2	0/1:31,8:32:39:0.205:2	./.	0/1:56,51:32:108:0.477:2	0/1:0,31:32:31:1.00:2	0/1:43,21:32:64:0.328:2	0/1:26,27:33:53:0.509:2	0/1:0,53:32:53:1.00:2	0/1:45,44:33:89:0.494:2	0/1:0,66:31:66:1.00:2	./.
chr1	53712727	rs5174	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,15:33:28:0.536:2	0/1:5,6:32:11:0.545:2	./.	./.	0/1:15,11:32:26:0.423:2	0/1:32,17:32:49:0.347:2	./.	0/1:0,36:32:36:1.00:2	./.	0/1:0,31:31:31:1.00:2	./.
chr1	53716416	rs3737983	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,50:32:116:0.431:2	0/1:36,43:31:79:0.544:2	./.	./.	0/1:72,53:31:125:0.424:2	0/1:91,76:31:167:0.455:2	0/1:124,6:31:130:0.046:2	0/1:1,136:31:137:0.993:2	./.	0/1:0,95:32:95:1.00:2	./.
chr1	53732315	rs2297660	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,50:31:102:0.490:2	0/1:25,27:32:52:0.519:2	./.	./.	0/1:62,52:31:114:0.456:2	0/1:58,50:30:108:0.463:2	./.	0/1:2,121:31:123:0.984:2	./.	0/1:0,112:31:112:1.00:2	./.
chr1	53746346	rs201364912	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,8:14:46:0.174:2
chr1	53792651	rs3820198	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,21:32:37:0.568:2	0/1:10,9:32:19:0.474:2	0/1:2,5:32:7:0.714:2	0/1:0,60:32:60:1.00:2	./.	0/1:49,26:31:75:0.347:2	0/1:1,83:32:84:0.988:2	./.	./.	./.	0/1:37,28:32:65:0.431:2
chr1	53927262	rs138758029	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,34:32:58:0.586:2	./.	./.	./.	./.	./.	./.	./.
chr1	53930360	rs61738842	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,12:28:32:0.375:2	0/1:7,7:30:14:0.500:2	0/1:1,6:28:7:0.857:2	0/1:28,25:26:54:0.472:2	./.	./.	0/1:32,27:24:59:0.458:2	./.	./.	./.	./.
chr1	53980367	rs142735388	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,71:32:156:0.455:2	./.	./.	./.	./.	./.
chr1	54060016	rs35227000	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:33:9:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	0/1:1,3:34:4:0.750:2	./.
chr1	54060101	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.
chr1	54060248	rs4307514	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,35:32:35:1.00:2	0/1:0,16:31:16:1.00:2	./.	./.	0/1:23,13:30:36:0.361:2	0/1:39,12:33:51:0.235:2	0/1:16,12:32:28:0.429:2	./.	./.	0/1:24,20:34:44:0.455:2	./.
chr1	54258880	rs2273139	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,44:31:114:0.386:2	./.	./.	0/1:67,82:32:149:0.550:2	./.	./.
chr1	54387408	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,6:30:139:0.043:2	./.	./.	./.	./.	./.	./.
chr1	54432019	rs2294514	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,54:30:92:0.587:2	0/1:63,14:28:77:0.182:2	0/1:68,51:29:119:0.429:2	./.	./.	0/1:51,39:31:90:0.433:2	./.	./.
chr1	54483033	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.
chr1	54483752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.	./.	./.	./.
chr1	54518788	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	./.	./.	./.
chr1	54605320	rs66812916	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,6:32:67:0.090:2	./.	./.
chr1	54605557	rs138864964	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:30:61:0.508:2
chr1	54606804	rs3766465	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,42:32:85:0.494:2	0/1:27,24:33:51:0.471:2	0/1:0,15:33:15:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,135:32:135:1.00:2	0/1:1,122:32:123:0.992:2	0/1:0,148:33:148:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,100:33:100:1.00:2	0/1:2,85:33:87:0.977:2	0/1:0,107:32:107:1.00:2
chr1	54606891	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54607051	rs671103	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:31:98:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,156:31:156:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,112:31:112:1.00:2
chr1	54610389	rs34826914	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,46:32:86:0.535:2	0/1:19,22:31:41:0.537:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54656440	rs191854671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,14:32:40:0.350:2	./.	./.	./.	./.
chr1	54661150	rs946448	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,15:32:37:0.405:2	0/1:11,15:32:26:0.577:2	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	0/1:0,56:30:56:1.00:2	./.	./.	0/1:22,22:31:44:0.500:2
chr1	54661234	rs79743819	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54661254	rs149914770	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,85:32:187:0.455:2	./.	./.	./.
chr1	54661262	rs11544199	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:31:57:0.526:2	0/1:18,24:32:42:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54681920	rs13571	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,82:33:189:0.434:2	0/1:74,55:32:129:0.426:2	0/1:0,32:32:32:1.00:2	0/1:111,84:33:195:0.431:2	0/1:127,66:32:193:0.342:2	0/1:0,183:33:183:1.00:2	0/1:3,179:33:182:0.984:2	0/1:3,185:32:188:0.984:2	0/1:1,190:33:191:0.995:2	0/1:0,187:33:187:1.00:2	0/1:105,87:33:192:0.453:2
chr1	54683856	rs15921	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,47:31:109:0.431:2	0/1:31,37:31:68:0.544:2	./.	0/1:73,64:32:137:0.467:2	0/1:48,27:32:75:0.360:2	./.	./.	./.	./.	./.	0/1:78,62:33:140:0.443:2
chr1	54683925	rs6621	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,40:33:112:0.357:2
chr1	54686374	rs612711	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:32:126:0.992:2	0/1:1,87:32:88:0.989:2	0/1:6,6:33:12:0.500:2	0/1:73,79:32:152:0.520:2	0/1:0,165:31:165:1.00:2	0/1:69,74:31:143:0.517:2	0/1:0,179:31:179:1.00:2	0/1:86,102:31:188:0.543:2	0/1:91,74:33:165:0.448:2	0/1:65,55:32:120:0.458:2	0/1:83,69:32:152:0.454:2
chr1	54686464	rs613158	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,63:30:152:0.414:2	0/1:44,48:31:92:0.522:2	./.	0/1:83,87:31:170:0.512:2	0/1:0,147:31:147:1.00:2	./.	0/1:1,159:32:160:0.994:2	0/1:81,98:32:179:0.547:2	./.	./.	0/1:84,76:32:160:0.475:2
chr1	54694487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.	./.
chr1	54703918	rs41294796	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	./.
chr1	54704510	rs2274662	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:32:18:0.333:2	0/1:8,7:33:15:0.467:2	./.	./.	0/1:15,10:30:25:0.400:2	0/1:2,22:32:25:0.917:2	0/1:0,13:33:13:1.00:2	0/1:11,9:32:20:0.450:2	0/1:5,6:31:11:0.545:2	0/1:14,12:32:26:0.462:2	0/1:11,6:32:17:0.353:2
chr1	54704563	rs2274663	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:32:9:0.444:2	0/1:3,6:32:9:0.667:2	./.	./.	0/1:2,8:30:10:0.800:2	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	0/1:0,14:31:14:1.00:2
chr1	54704567	rs11206312	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:28:10:1.00:2	0/1:0,9:28:9:1.00:2	./.	0/1:14,10:30:24:0.417:2	0/1:0,9:26:9:1.00:2	0/1:6,6:26:13:0.500:2	0/1:0,2:29:2:1.00:2	0/1:0,17:27:17:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,13:26:13:1.00:2
chr1	54704629	rs2274664	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,15:31:33:0.455:2	0/1:4,7:27:11:0.636:2	0/1:0,5:32:5:1.00:2	./.	0/1:17,5:30:22:0.227:2	0/1:13,13:30:26:0.500:2	0/1:0,8:32:8:1.00:2	0/1:11,8:31:19:0.421:2	0/1:19,15:32:34:0.441:2	0/1:10,8:29:18:0.444:2	0/1:13,14:32:27:0.519:2
chr1	54723806	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	./.	./.	./.
chr1	54870570	.	G	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,6:31:79:0.076:2	0/1:84,4:32:88:0.045:2	0/1:73,6:32:79:0.076:2	0/1:79,4:32:83:0.048:2	0/1:103,20:32:123:0.163:2	0/1:97,12:33:109:0.110:2	0/1:82,8:31:90:0.089:2	0/1:117,4:33:121:0.033:2
chr1	54870607	rs368326638	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54871665	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.
chr1	55050353	rs41294808	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	0/1:71,64:32:135:0.474:2	./.	./.	./.	./.
chr1	55051497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr1	55051515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,6:31:142:0.042:2	./.	./.	./.
chr1	55060362	rs1702003	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:31:68:0.441:2
chr1	55064970	rs148238018	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,73:31:126:0.579:2	./.	./.	./.	./.	./.
chr1	55075452	rs1368883	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,47:31:49:0.979:2	0/1:1,27:30:28:0.964:2	./.	0/1:29,34:31:63:0.540:2	0/1:0,59:30:59:1.00:2	0/1:52,47:31:99:0.475:2	0/1:30,32:32:62:0.516:2	0/1:1,90:31:91:0.989:2	0/1:47,28:33:75:0.373:2	0/1:0,64:31:65:1.00:2	0/1:26,26:31:53:0.500:2
chr1	55076113	rs4926650	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,48:30:91:0.527:2
chr1	55081841	rs142814457	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,32:32:44:0.744:2
chr1	55119144	rs11206407	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,23:29:65:0.354:2	0/1:23,24:30:47:0.511:2	0/1:3,4:26:7:0.571:2	./.	0/1:29,29:30:58:0.500:2	0/1:31,26:28:57:0.456:2	0/1:30,26:31:56:0.464:2	./.	0/1:48,31:30:79:0.392:2	./.	./.
chr1	55119289	rs9332417	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,46:33:91:0.505:2	0/1:27,23:33:50:0.460:2	0/1:0,11:33:11:1.00:2	./.	0/1:1,69:32:70:0.986:2	0/1:38,50:32:88:0.568:2	0/1:51,43:33:94:0.457:2	0/1:44,55:32:99:0.556:2	0/1:56,55:33:111:0.495:2	0/1:3,82:33:85:0.965:2	./.
chr1	55119515	rs1655519	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,39:29:80:0.488:2	0/1:22,31:28:53:0.585:2	./.	0/1:4,101:29:105:0.962:2	./.	0/1:59,59:29:118:0.500:2	0/1:79,56:28:136:0.415:2	0/1:65,60:28:126:0.480:2	./.	./.	0/1:65,53:28:118:0.449:2
chr1	55119534	rs17399810	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,6:30:20:0.300:2	./.	0/1:75,93:31:168:0.554:2	./.	./.	0/1:82,80:31:162:0.494:2	./.	0/1:0,94:32:94:1.00:2	./.
chr1	55119546	rs1655518	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,140:32:140:1.00:2	0/1:1,161:31:162:0.994:2	0/1:0,153:32:153:1.00:2	0/1:2,187:31:190:0.989:2	0/1:0,178:32:178:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,121:31:121:1.00:2
chr1	55136529	rs480963	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,30:29:61:0.492:2	0/1:26,24:29:50:0.480:2	./.	0/1:1,115:29:116:0.991:2	./.	0/1:54,49:29:103:0.476:2	0/1:78,41:29:119:0.345:2	0/1:1,104:29:105:0.990:2	./.	./.	0/1:50,33:29:83:0.398:2
chr1	55139741	rs570218	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:29:52:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,45:29:45:1.00:2	0/1:23,15:30:38:0.395:2	0/1:0,54:29:54:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,62:29:62:1.00:2	./.	0/1:0,81:30:81:1.00:2
chr1	55144466	rs75269200	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,27:33:65:0.415:2	./.	./.	./.	./.	./.	./.	./.
chr1	55165942	rs2304310	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,70:31:166:0.422:2	0/1:76,91:31:167:0.545:2	./.	./.	./.	0/1:62,91:32:153:0.595:2	./.	0/1:75,84:32:159:0.528:2
chr1	55166842	rs1065173	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,51:33:111:0.459:2	0/1:86,56:32:142:0.394:2	./.	./.	./.	0/1:0,82:33:82:1.00:2	./.	0/1:42,48:31:90:0.533:2
chr1	55167773	rs646356	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:0,91:31:91:1.00:2	0/1:20,14:30:34:0.412:2	0/1:1,187:31:189:0.995:2	0/1:101,96:31:198:0.487:2	0/1:0,190:30:190:1.00:2	0/1:110,84:30:194:0.433:2	0/1:103,88:31:191:0.461:2	0/1:0,183:31:184:1.00:2	0/1:0,155:30:155:1.00:2	0/1:69,71:30:140:0.507:2
chr1	55182300	rs1147990	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,15:31:15:1.00:2	./.	0/1:0,15:32:15:1.00:2	./.	0/1:5,9:31:14:0.643:2	0/1:0,9:31:9:1.00:2	./.	0/1:10,13:30:23:0.565:2
chr1	55186925	rs3737825	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,4:33:22:0.182:2	./.	./.	0/1:20,12:31:32:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr1	55188382	rs11550481	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,31:33:57:0.544:2	0/1:20,16:33:36:0.444:2	0/1:7,3:32:10:0.300:2	0/1:32,35:33:67:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr1	55197320	rs1062700	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,17:31:54:0.315:2	0/1:17,15:31:32:0.469:2	./.	0/1:38,26:31:64:0.406:2	./.	./.	./.	./.	./.	./.	./.
chr1	55223957	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.	./.	./.
chr1	55224131	rs2270004	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:33:44:0.386:2	./.	./.	0/1:26,22:33:48:0.458:2	./.	0/1:17,17:33:34:0.500:2
chr1	55224751	rs11577368	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,38:31:69:0.551:2	./.	./.	0/1:38,28:31:66:0.424:2	./.	0/1:27,29:31:56:0.518:2
chr1	55224773	rs116816976	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,45:28:91:0.495:2	./.	./.	./.	./.	./.	./.
chr1	55224784	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.	./.
chr1	55248074	rs12144325	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	0/1:39,23:30:62:0.371:2	./.	0/1:1,73:30:74:0.986:2	./.	./.	./.
chr1	55250479	rs78948067	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	0/1:52,76:32:128:0.594:2	./.	0/1:3,139:32:142:0.979:2	./.	./.	./.
chr1	55251689	rs586462	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,114:31:115:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,92:32:92:1.00:2
chr1	55266797	rs671108	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:27:39:1.00:2	0/1:0,25:29:25:1.00:2	./.	0/1:72,54:29:126:0.429:2	./.	./.	0/1:78,67:29:145:0.462:2	./.	0/1:4,77:30:81:0.951:2	./.	./.
chr1	55273580	rs9782980	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:32:33:0.424:2	0/1:0,36:33:36:1.00:2	0/1:23,8:31:31:0.258:2	0/1:11,16:32:27:0.593:2	0/1:16,21:33:37:0.568:2	./.	0/1:11,28:33:39:0.718:2	0/1:0,55:33:55:1.00:2
chr1	55277599	rs600499	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,85:33:85:1.00:2	0/1:2,70:33:72:0.972:2	0/1:0,81:32:81:1.00:2
chr1	55282721	rs150463971	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,42:32:124:0.339:2	./.	./.	./.	./.
chr1	55307501	rs41297871	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,31:32:32:0.969:2	0/1:0,18:31:18:1.00:2	./.	0/1:21,21:33:42:0.500:2	./.	./.	0/1:17,22:30:39:0.564:2	./.	0/1:39,23:32:62:0.371:2	./.	./.
chr1	55319902	rs718265	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:34:13:0.385:2	0/1:42,26:32:68:0.382:2	0/1:0,49:32:49:1.00:2	0/1:48,42:31:90:0.467:2	0/1:23,30:33:53:0.566:2	0/1:45,33:32:78:0.423:2	0/1:37,26:33:63:0.413:2	0/1:0,61:31:61:1.00:2	0/1:0,71:32:71:1.00:2
chr1	55352613	rs79857573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:29:63:0.540:2	./.	./.	./.
chr1	55446697	rs2253465	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,6:32:11:0.545:2	0/1:2,3:31:5:0.600:2	./.	0/1:2,6:28:8:0.750:2	0/1:4,9:31:13:0.692:2	0/1:0,9:31:9:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,12:33:12:1.00:2	0/1:3,4:32:7:0.571:2	0/1:0,9:30:9:1.00:2
chr1	55451976	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:30:43:0.488:2	./.	./.
chr1	55457710	rs2500326	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,20:31:49:0.408:2	0/1:12,10:33:22:0.455:2	0/1:0,12:32:12:1.00:2	0/1:0,66:32:66:1.00:2	0/1:53,46:32:99:0.465:2	0/1:0,75:32:75:1.00:2	0/1:60,47:33:107:0.439:2	0/1:0,85:32:85:1.00:2	0/1:0,59:33:59:1.00:2	0/1:33,31:33:64:0.484:2	0/1:0,45:33:45:1.00:2
chr1	55474262	rs33938617	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:26,17:33:43:0.395:2	./.	./.	./.	./.	./.	./.	0/1:19,36:32:55:0.655:2
chr1	55505540	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	55505647	rs11591147	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	./.
chr1	55505668	rs11583680	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,24:30:57:0.421:2	./.	./.	./.	0/1:30,36:31:66:0.545:2	./.	./.
chr1	55512316	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr1	55523033	rs509504	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,91:32:91:1.00:2	0/1:1,80:32:81:0.988:2	0/1:0,88:32:88:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,69:32:69:1.00:2
chr1	55524197	rs540796	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:32:157:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,18:32:18:1.00:2	0/1:1,184:32:185:0.995:2	0/1:0,187:32:187:1.00:2	0/1:103,83:32:186:0.446:2	0/1:0,176:32:176:1.00:2	0/1:1,172:32:173:0.994:2	0/1:89,92:33:182:0.508:2	0/1:0,178:32:178:1.00:2	0/1:0,175:32:175:1.00:2
chr1	55524237	rs562556	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:31:129:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,146:31:147:0.993:2	0/1:0,131:30:131:1.00:2	0/1:75,72:30:147:0.490:2	0/1:0,126:31:126:1.00:2	0/1:0,145:30:145:1.00:2	0/1:60,66:31:127:0.524:2	0/1:0,141:31:141:1.00:2	0/1:1,126:30:128:0.992:2
chr1	55529187	rs505151	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,26:31:26:1.00:2
chr1	55538462	rs17410294	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:31:45:0.333:2	./.	./.	./.	./.	./.
chr1	55541174	rs487230	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,81:32:81:1.00:2	0/1:7,16:33:23:0.696:2	0/1:1,127:33:128:0.992:2	0/1:2,99:32:101:0.980:2	0/1:70,48:33:118:0.407:2	0/1:1,111:33:112:0.991:2	0/1:0,120:33:120:1.00:2	0/1:0,126:34:126:1.00:2	0/1:1,128:33:129:0.992:2	0/1:0,171:33:171:1.00:2
chr1	55551677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:53:0.077:2	./.	./.	./.	./.
chr1	55575881	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.
chr1	55591139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.
chr1	55591356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:34:156:0.026:2	./.
chr1	55627878	rs140813382	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:30:33:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	55638075	rs1165222	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,46:31:46:1.00:2	0/1:33,37:31:70:0.529:2	0/1:0,57:31:57:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,86:32:86:1.00:2
chr1	55643674	rs139709300	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	56977819	rs3738570	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.
chr1	56990038	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.
chr1	57002627	rs1136164	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	57002753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr1	57185340	rs41285924	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:33:46:0.457:2	./.	./.	./.
chr1	57209695	rs1156845	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,18:31:36:0.500:2	./.	./.	./.	./.	./.	./.
chr1	57221553	rs1774808	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,19:33:31:0.613:2	0/1:13,11:32:24:0.458:2	0/1:1,2:32:3:0.667:2	0/1:2,35:31:37:0.946:2	0/1:11,13:31:24:0.542:2	0/1:0,28:32:28:1.00:2	0/1:0,26:31:26:1.00:2	0/1:4,21:32:25:0.840:2	0/1:26,9:32:35:0.257:2	./.	0/1:0,43:33:43:1.00:2
chr1	57221554	rs1738401	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,19:33:30:0.633:2	0/1:13,11:33:24:0.458:2	0/1:0,2:33:2:1.00:2	0/1:0,35:33:35:1.00:2	0/1:11,13:32:24:0.542:2	0/1:0,28:32:28:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,21:32:21:1.00:2	0/1:23,9:33:32:0.281:2	./.	0/1:0,43:33:43:1.00:2
chr1	57257817	rs2298130	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,14:33:24:0.583:2	0/1:15,18:33:33:0.545:2	0/1:7,19:32:26:0.731:2	0/1:6,6:28:12:0.500:2	./.	./.	./.	0/1:19,27:32:46:0.587:2
chr1	57340727	rs652785	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,27:33:42:0.643:2	0/1:10,13:32:23:0.565:2	0/1:0,6:31:6:1.00:2	./.	0/1:54,19:31:73:0.260:2	./.	0/1:35,22:32:57:0.386:2	./.	0/1:31,36:33:67:0.537:2	0/1:25,20:30:45:0.444:2	./.
chr1	57383358	rs17300936	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,84:31:148:0.568:2	0/1:57,44:31:101:0.436:2	./.	./.	./.	0/1:89,87:30:176:0.494:2	./.	0/1:108,84:31:192:0.438:2	./.	./.	./.
chr1	57415310	rs12085435	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:32:85:0.365:2	./.	0/1:33,24:33:57:0.421:2	./.
chr1	57422484	rs1013579	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,40:33:40:1.00:2	0/1:13,5:27:18:0.278:2	0/1:0,111:32:111:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,117:33:117:1.00:2
chr1	57422511	rs12067507	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,71:32:147:0.483:2	./.	0/1:51,56:32:107:0.523:2	./.
chr1	57480750	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2
chr1	58939634	rs12407003	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,65:32:132:0.492:2	./.	./.	./.	0/1:71,50:34:122:0.413:2	./.	./.
chr1	58971831	rs3087585	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,31:31:70:0.443:2	0/1:28,26:32:55:0.481:2	./.	./.	0/1:54,35:30:89:0.393:2	0/1:52,52:32:104:0.500:2	0/1:45,65:31:110:0.591:2	0/1:63,61:31:124:0.492:2	0/1:52,51:32:103:0.495:2	0/1:1,93:31:94:0.989:2	0/1:46,43:30:89:0.483:2
chr1	58999651	rs17117678	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,55:32:96:0.573:2	./.	0/1:55,64:33:119:0.538:2	0/1:55,59:34:114:0.518:2	0/1:42,34:32:76:0.447:2	./.
chr1	59002221	rs7537470	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,71:32:144:0.497:2	./.	0/1:55,44:33:99:0.444:2	0/1:69,77:34:146:0.527:2	0/1:60,45:32:105:0.429:2	./.
chr1	59041940	rs114373153	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2	./.	./.	./.	./.	./.
chr1	59042001	rs12121124	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:30:53:0.509:2	./.	./.	./.	./.	./.	./.	0/1:12,12:29:24:0.500:2
chr1	59042311	rs35075952	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:34:14:0.214:2	0/1:15,5:34:20:0.250:2	0/1:9,3:32:12:0.250:2	./.
chr1	59042997	rs61779294	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:28:13:0.538:2	0/1:6,3:33:9:0.333:2	0/1:0,4:29:4:1.00:2	./.
chr1	59125683	rs232777	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:32:14:0.357:2	0/1:49,33:31:83:0.402:2	./.	./.	./.	./.	./.	./.	./.
chr1	59127086	rs7523134	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,48:32:106:0.453:2	0/1:32,28:31:60:0.467:2	0/1:6,4:29:10:0.400:2	0/1:39,45:31:84:0.536:2	./.	0/1:1,66:31:67:0.985:2	./.	0/1:56,24:31:80:0.300:2	./.	./.	0/1:74,65:31:139:0.468:2
chr1	59139251	rs138210329	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:32:58:0.483:2	./.	./.
chr1	59142713	rs579110	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,24:28:59:0.407:2	0/1:30,17:29:47:0.362:2	./.	0/1:0,46:30:46:1.00:2	0/1:26,29:30:55:0.527:2	0/1:41,31:30:72:0.431:2	0/1:0,36:30:36:1.00:2	./.
chr1	59147926	rs12139511	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,27:32:44:0.614:2	0/1:12,30:32:42:0.714:2	./.	0/1:0,35:32:35:1.00:2	0/1:21,25:32:46:0.543:2	0/1:21,23:33:44:0.523:2	0/1:0,43:33:43:1.00:2	./.
chr1	59148118	rs17118103	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,13:33:31:0.419:2	0/1:75,74:32:149:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr1	59148136	rs141778225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,62:33:131:0.473:2	./.	./.	./.	./.
chr1	59160885	rs2064374	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:8,9:33:17:0.529:2	0/1:9,5:30:14:0.357:2	0/1:2,11:33:13:0.846:2	./.	0/1:11,20:32:31:0.645:2	0/1:15,9:33:24:0.375:2	./.	0/1:0,39:32:39:1.00:2
chr1	59248813	rs2760499	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,33:31:33:1.00:2
chr1	59249031	rs2811894	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:0,19:33:19:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,27:31:27:1.00:2
chr1	59249213	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:24:8:0.500:2	0/1:5,4:26:9:0.444:2	0/1:1,4:26:5:0.800:2	./.	./.	./.
chr1	59249347	rs1407816	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:28:73:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,87:27:87:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,64:28:64:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,38:27:38:1.00:2
chr1	59787350	rs835409	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,44:32:92:0.478:2	0/1:28,39:32:67:0.582:2	./.	./.	0/1:43,40:31:83:0.482:2	0/1:38,28:33:66:0.424:2	./.	./.
chr1	59844471	rs835435	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,37:32:46:0.804:2	0/1:0,32:32:32:1.00:2	0/1:23,15:32:38:0.395:2	0/1:9,24:32:33:0.727:2	0/1:25,25:32:50:0.500:2	0/1:22,21:33:43:0.488:2	./.	./.
chr1	60019853	rs62623594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,79:31:197:0.401:2	./.	./.	./.	./.	./.	./.
chr1	60091737	rs373070133	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.	./.	./.	./.
chr1	60381674	rs2229190	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.
chr1	60466814	rs626251	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,27:30:29:0.931:2	0/1:11,9:30:20:0.450:2	0/1:0,24:28:24:1.00:2	0/1:14,11:32:25:0.440:2	./.	0/1:17,7:32:24:0.292:2	./.	0/1:17,6:29:23:0.261:2
chr1	60503762	rs17560663	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,24:33:43:0.558:2	0/1:16,7:33:23:0.304:2	./.	./.	0/1:11,10:31:21:0.476:2	./.	0/1:10,18:31:28:0.643:2	0/1:2,22:32:24:0.917:2	./.	./.	./.
chr1	60506762	rs74843231	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,101:33:185:0.546:2	./.	./.	./.	./.
chr1	61869783	rs2236059	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,59:31:117:0.504:2	./.	./.	0/1:73,56:31:129:0.434:2	0/1:0,150:32:150:1.00:2	0/1:56,57:33:113:0.504:2	0/1:42,45:32:87:0.517:2	0/1:2,101:32:104:0.981:2
chr1	61872353	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.
chr1	62190953	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,63:32:125:0.504:2	./.	./.	./.	./.	./.	./.	./.
chr1	62232031	rs1286835	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,43:30:43:1.00:2	0/1:0,10:30:11:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,43:31:43:1.00:2
chr1	62232130	rs11207827	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,7:33:26:0.269:2	./.	./.	0/1:7,19:33:26:0.731:2	./.	./.	./.	./.	./.	./.	./.
chr1	62253483	rs3762321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:32:58:0.500:2	./.	./.	./.
chr1	62257036	rs1286823	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	0/1:28,31:34:60:0.525:2	./.	./.
chr1	62261168	rs7516332	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,60:32:127:0.472:2	0/1:3,78:31:81:0.963:2	0/1:56,61:32:117:0.521:2	0/1:3,76:32:79:0.962:2	0/1:67,57:32:124:0.460:2	0/1:53,51:33:104:0.490:2	0/1:59,58:32:117:0.496:2	./.
chr1	62330080	rs2799627	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:0,36:32:36:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,51:33:51:1.00:2	0/1:1,74:33:75:0.987:2	0/1:0,72:33:72:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,68:34:68:1.00:2
chr1	62380270	rs1134766	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,14:31:15:0.933:2	0/1:2,175:32:177:0.989:2	./.	0/1:137,51:30:188:0.271:2	0/1:104,61:32:165:0.370:2	0/1:0,177:32:177:1.00:2	0/1:0,158:33:158:1.00:2	0/1:115,56:31:171:0.327:2	0/1:91,78:33:169:0.462:2
chr1	62380298	rs1056513	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,90:33:91:0.989:2	./.	./.	0/1:72,47:32:119:0.395:2	0/1:4,125:33:129:0.969:2	0/1:0,100:34:100:1.00:2	0/1:91,38:32:129:0.295:2	0/1:57,69:34:126:0.548:2
chr1	62455971	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.	./.
chr1	62456014	rs1134767	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:39,41:31:80:0.513:2	./.	./.	0/1:30,20:32:50:0.400:2	0/1:32,34:30:66:0.515:2	./.	./.	./.
chr1	62483599	rs34726576	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,9:30:55:0.164:2	./.	./.	0/1:43,40:32:83:0.482:2	./.	./.	./.
chr1	62483623	rs41313250	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,14:32:45:0.311:2	./.	./.	./.	./.	./.	./.
chr1	62516683	rs2498982	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,31:33:71:0.437:2	0/1:32,23:32:55:0.418:2	0/1:0,7:31:7:1.00:2	0/1:39,40:32:79:0.506:2	0/1:29,35:32:64:0.547:2	0/1:58,30:32:88:0.341:2	0/1:50,25:32:75:0.333:2	0/1:43,50:33:93:0.538:2	./.	./.	./.
chr1	62579823	rs1475563	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,53:31:103:0.515:2	0/1:28,36:32:64:0.563:2	0/1:0,13:31:13:1.00:2	0/1:89,77:32:166:0.464:2	0/1:72,39:31:111:0.351:2	0/1:78,56:31:134:0.418:2	0/1:76,58:32:134:0.433:2	0/1:154,5:31:159:0.031:2	./.	0/1:3,112:31:115:0.974:2	0/1:80,67:32:147:0.456:2
chr1	62579891	rs12140153	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:31:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	62579907	rs7418709	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,47:32:108:0.435:2	./.	./.	./.	./.	./.	0/1:1,72:32:73:0.986:2	0/1:59,39:32:98:0.398:2
chr1	62582867	rs374945847	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:33:62:0.468:2	0/1:10,17:32:27:0.630:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	62594593	rs2476194	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,31:31:52:0.596:2	0/1:20,10:31:30:0.333:2	0/1:2,7:30:9:0.778:2	./.	0/1:45,31:31:76:0.408:2	./.	0/1:49,33:32:82:0.402:2	./.	0/1:47,31:32:78:0.397:2	./.	./.
chr1	62672481	rs146949245	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,55:34:109:0.505:2	./.	./.
chr1	62672546	rs2457829	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:0,29:33:29:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,41:31:41:1.00:2	0/1:2,37:32:39:0.949:2	0/1:0,36:32:36:1.00:2	0/1:25,17:34:42:0.405:2	0/1:23,9:32:32:0.281:2	0/1:0,51:32:51:1.00:2
chr1	62673037	rs7542665	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,23:30:61:0.377:2	0/1:20,13:32:33:0.394:2	0/1:0,10:33:10:1.00:2	0/1:0,80:33:80:1.00:2	0/1:3,59:32:62:0.952:2	0/1:52,35:32:87:0.402:2	0/1:2,66:33:68:0.971:2	0/1:41,48:33:89:0.539:2	0/1:34,29:33:63:0.460:2	./.	0/1:39,39:33:78:0.500:2
chr1	62673225	rs7533274	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,14:32:42:0.333:2	0/1:10,17:31:27:0.630:2	0/1:0,4:31:4:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,21:30:21:1.00:2	0/1:19,14:30:33:0.424:2	0/1:0,26:31:26:1.00:2	0/1:11,17:32:28:0.607:2	0/1:18,26:32:44:0.591:2	./.	0/1:27,34:32:61:0.557:2
chr1	62673287	rs2457828	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,6:33:25:0.240:2	0/1:3,7:33:10:0.700:2	./.	0/1:7,12:33:19:0.632:2	0/1:6,9:33:15:0.600:2	./.	0/1:5,7:31:12:0.583:2	0/1:10,8:33:18:0.444:2	./.	./.	0/1:17,13:34:30:0.433:2
chr1	62675619	rs4625314	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,45:33:90:0.500:2	0/1:26,27:32:53:0.509:2	./.	0/1:2,64:32:66:0.970:2	0/1:2,51:30:53:0.962:2	0/1:42,21:32:63:0.333:2	0/1:38,15:32:53:0.283:2	0/1:45,44:32:89:0.494:2	./.	./.	0/1:73,51:32:124:0.411:2
chr1	62675664	rs200931139	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,8:28:35:0.229:2	./.	0/1:43,9:29:52:0.173:2	./.	./.	./.	./.	./.
chr1	62675667	rs201629799	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,8:29:35:0.229:2	./.	0/1:43,7:33:50:0.140:2	./.	./.	./.	./.	./.
chr1	62675673	rs200789118	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:29:44:0.091:2	./.	./.	./.	./.	./.
chr1	62675674	rs141196718	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:43:0.095:2	./.	./.	./.	./.	./.
chr1	62675709	rs7551777	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	0/1:24,22:32:46:0.478:2	./.	0/1:37,27:34:64:0.422:2	./.	./.
chr1	62675892	rs2481694	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:32:54:0.481:2	0/1:19,22:32:41:0.537:2	0/1:0,13:32:13:1.00:2	0/1:2,62:33:64:0.969:2	0/1:0,33:32:33:1.00:2	0/1:30,35:32:65:0.538:2	0/1:0,30:31:30:1.00:2	0/1:24,25:32:49:0.510:2	0/1:28,33:33:61:0.541:2	./.	0/1:44,32:33:76:0.421:2
chr1	62676091	rs11207933	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,21:30:52:0.404:2	./.	0/1:18,37:29:55:0.673:2	0/1:33,24:31:57:0.421:2	./.	0/1:41,24:31:65:0.369:2	./.	./.
chr1	62676284	rs2886644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,20:31:54:0.370:2	./.	./.	./.	./.	./.	./.
chr1	62676612	rs66958136	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,61:34:117:0.521:2	0/1:33,50:33:83:0.602:2	0/1:11,7:33:18:0.389:2	0/1:1,134:33:135:0.993:2	0/1:31,45:33:76:0.592:2	0/1:59,66:33:125:0.528:2	0/1:36,56:33:92:0.609:2	0/1:62,72:33:134:0.537:2	./.	./.	0/1:74,79:32:153:0.516:2
chr1	62713224	rs2941679	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:33:74:0.986:2	0/1:0,43:33:43:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,187:33:187:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,102:34:103:1.00:2	0/1:0,76:33:77:1.00:2	0/1:0,65:33:65:1.00:2
chr1	62713246	rs10889315	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,31:32:78:0.397:2	0/1:21,22:31:43:0.512:2	./.	0/1:1,90:31:92:0.989:2	0/1:113,79:31:192:0.411:2	0/1:73,49:31:122:0.402:2	0/1:85,87:32:172:0.506:2	0/1:90,69:32:159:0.434:2	./.	./.	0/1:40,35:32:75:0.467:2
chr1	62728784	rs2666472	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:28:72:0.986:2	0/1:0,37:28:37:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,75:28:75:1.00:2	0/1:79,25:28:104:0.240:2	0/1:0,96:28:96:1.00:2	0/1:1,105:27:106:0.991:2	0/1:0,87:28:87:1.00:2	0/1:1,92:29:93:0.989:2	0/1:0,65:28:65:1.00:2	0/1:1,77:28:78:0.987:2
chr1	62728838	rs2258470	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:29:65:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,106:30:106:1.00:2	0/1:118,38:29:156:0.244:2	0/1:0,117:30:117:1.00:2	0/1:2,123:30:125:0.984:2	0/1:0,132:29:132:1.00:2	0/1:1,101:30:102:0.990:2	0/1:0,68:29:68:1.00:2	0/1:1,71:29:72:0.986:2
chr1	62728861	rs2260581	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,108:33:108:1.00:2	0/1:104,37:32:141:0.262:2	0/1:0,109:32:109:1.00:2	0/1:2,116:33:118:0.983:2	0/1:0,140:33:140:1.00:2	0/1:1,90:33:91:0.989:2	0/1:0,72:33:72:1.00:2	0/1:2,67:32:69:0.971:2
chr1	62728918	rs2262110	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,50:32:50:1.00:2	0/1:46,33:32:79:0.418:2	0/1:0,79:32:79:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,75:32:75:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,47:32:47:1.00:2	0/1:1,40:32:41:0.976:2
chr1	62732421	rs11207949	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:65,39:28:104:0.375:2	0/1:32,37:29:69:0.536:2	./.	./.	./.	./.	0/1:48,38:30:86:0.442:2	0/1:68,62:29:130:0.477:2	0/1:0,106:29:106:1.00:2	0/1:54,48:29:102:0.471:2	0/1:85,62:29:147:0.422:2
chr1	62734089	rs17123306	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr1	62738904	rs7516290	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:26:49:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,5:26:5:1.00:2	0/1:1,65:28:66:0.985:2	0/1:34,30:28:64:0.469:2	0/1:35,29:29:64:0.453:2	0/1:0,39:27:39:1.00:2	0/1:0,38:25:38:1.00:2	0/1:0,63:28:65:1.00:2	0/1:0,52:27:52:1.00:2	0/1:1,38:26:39:0.974:2
chr1	62738961	rs61623093	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,24:29:60:0.400:2	./.	./.	./.	./.	./.	./.	0/1:14,21:30:35:0.600:2
chr1	62739198	rs17855078	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,60:31:116:0.517:2	0/1:28,20:31:48:0.417:2	0/1:0,10:30:10:1.00:2	0/1:57,39:31:96:0.406:2	0/1:51,30:30:81:0.370:2	./.	0/1:50,54:31:104:0.519:2	0/1:46,47:31:93:0.505:2	./.	0/1:34,34:31:68:0.500:2	0/1:38,44:29:82:0.537:2
chr1	62739495	rs115190866	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,58:31:116:0.500:2	./.	./.	./.	./.	./.
chr1	62740065	rs12127930	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,62:29:127:0.488:2	0/1:35,36:29:72:0.507:2	0/1:0,23:29:23:1.00:2	0/1:0,188:29:188:1.00:2	0/1:82,108:29:190:0.568:2	0/1:102,91:29:194:0.472:2	0/1:98,93:29:191:0.487:2	0/1:92,94:28:186:0.505:2	./.	0/1:88,66:29:155:0.429:2	0/1:1,148:29:149:0.993:2
chr1	62740264	rs41309173	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:28:34:0.441:2	./.	./.	./.	./.	./.
chr1	62740446	rs2666506	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,54:30:54:1.00:2	0/1:64,26:28:90:0.289:2	0/1:67,54:29:121:0.446:2	0/1:1,63:29:64:0.984:2	0/1:0,48:29:48:1.00:2	0/1:0,58:29:58:1.00:2	0/1:1,54:29:55:0.982:2	0/1:0,55:29:55:1.00:2
chr1	62740449	rs2666507	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:27:53:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,54:29:54:1.00:2	0/1:60,25:28:86:0.294:2	0/1:66,54:28:121:0.450:2	0/1:1,62:29:63:0.984:2	0/1:0,48:29:48:1.00:2	0/1:0,58:27:58:1.00:2	0/1:2,54:28:56:0.964:2	0/1:0,54:29:54:1.00:2
chr1	62740752	rs17123318	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:29:11:0.636:2	./.	./.	./.	./.	./.	./.	./.
chr1	62907883	rs34521477	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:29:23:0.217:2	0/1:25,21:30:46:0.457:2	./.	./.	./.
chr1	62916290	rs141001844	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.	./.
chr1	62941456	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2	./.	./.
chr1	62960101	rs10889335	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,58:33:135:0.430:2	./.	0/1:78,81:32:159:0.509:2	./.	0/1:57,68:32:125:0.544:2	./.	./.	./.
chr1	62970382	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2
chr1	63069711	rs12563308	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,37:33:100:0.370:2	./.	./.
chr1	63097008	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,5:27:164:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	63153953	rs4344355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.
chr1	63299751	rs146422144	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	./.
chr1	63307154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.
chr1	63788951	rs2274187	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	63790503	rs6588025	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:32:12:0.333:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.
chr1	63877638	rs76393703	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,10:17:159:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,12:15:148:0.081:2
chr1	63881552	rs4630153	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,11:31:26:0.423:2	0/1:0,130:31:130:1.00:2	0/1:59,44:31:103:0.427:2	0/1:72,44:31:116:0.379:2	0/1:44,32:31:76:0.421:2	0/1:75,52:32:127:0.409:2	0/1:2,133:32:135:0.985:2	0/1:61,58:32:119:0.487:2	0/1:102,84:31:186:0.452:2
chr1	63894794	rs116660078	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,18:31:25:0.720:2	./.	./.	./.	./.	./.	./.
chr1	63991267	rs217478	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:28:10:0.400:2	0/1:0,69:30:69:1.00:2	0/1:38,38:29:77:0.500:2	./.	0/1:45,31:30:76:0.408:2	./.	0/1:80,35:30:115:0.304:2	./.	./.
chr1	64015033	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:32:136:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	64015217	rs217485	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:1,47:31:48:0.979:2	0/1:12,6:31:18:0.333:2	./.	0/1:16,16:33:32:0.500:2	./.	0/1:24,26:32:50:0.520:2	./.	./.
chr1	64036760	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.
chr1	64095111	rs855314	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,60:32:135:0.444:2	./.	./.	0/1:85,64:33:149:0.430:2	./.	./.
chr1	64097432	rs1126728	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,42:33:103:0.408:2	0/1:29,20:33:49:0.408:2	./.	./.	0/1:62,43:33:105:0.410:2	./.	./.	./.	./.	0/1:54,43:33:97:0.443:2	0/1:77,55:33:132:0.417:2
chr1	64114301	rs11208257	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:33:38:0.974:2	0/1:2,17:33:19:0.895:2	./.	0/1:15,33:32:48:0.688:2	./.	./.	./.	./.	./.	./.	./.
chr1	64515379	rs1772626	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,54:32:54:1.00:2	0/1:2,42:33:44:0.955:2	0/1:20,16:32:36:0.444:2	0/1:1,24:33:25:0.960:2
chr1	64603118	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	64608329	rs2762833	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,18:33:18:1.00:2	./.	0/1:0,23:32:23:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,41:31:41:1.00:2
chr1	64624842	rs6668545	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,50:32:101:0.500:2	0/1:42,29:31:71:0.408:2	0/1:39,47:31:86:0.547:2	0/1:50,33:32:83:0.398:2	./.	./.	./.	0/1:80,25:32:105:0.238:2
chr1	64643277	rs7527017	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,37:32:67:0.552:2	0/1:25,13:31:38:0.342:2	0/1:34,32:31:66:0.485:2	./.	./.	./.	./.	./.
chr1	64672478	rs35112334	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:29:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	65016349	rs2164571	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:122:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,118:31:118:1.00:2	0/1:1,135:31:136:0.993:2	0/1:0,115:32:115:1.00:2	0/1:1,136:31:137:0.993:2	0/1:0,119:32:119:1.00:2	0/1:0,141:31:141:1.00:2	0/1:0,111:31:111:1.00:2
chr1	65095054	rs17383227	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,35:31:89:0.393:2	./.	./.	./.	./.	./.	./.	0/1:54,36:32:90:0.400:2
chr1	65113568	rs6588100	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:30:84:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,129:30:130:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,139:29:139:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,108:29:108:1.00:2
chr1	65147002	rs3828064	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,74:33:170:0.438:2	./.	./.
chr1	65303659	rs12129819	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,36:33:79:0.456:2	0/1:31,25:33:56:0.446:2	./.	./.	./.	./.	./.	./.	0/1:73,75:33:148:0.507:2	./.	./.
chr1	65310489	rs2230588	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,42:29:81:0.519:2	0/1:14,15:28:29:0.517:2	./.	./.	0/1:53,48:29:101:0.475:2	0/1:41,40:29:81:0.494:2	./.	0/1:110,4:31:114:0.035:2	0/1:50,47:31:97:0.485:2	0/1:57,34:29:91:0.374:2	./.
chr1	65311262	rs2230587	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,34:30:81:0.420:2	0/1:23,20:30:43:0.465:2	0/1:0,8:31:9:1.00:2	0/1:63,37:30:101:0.370:2	0/1:43,20:30:63:0.317:2	./.	0/1:49,38:29:88:0.437:2	0/1:55,34:30:89:0.382:2	./.	0/1:53,25:30:78:0.321:2	./.
chr1	65312342	rs17127063	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,44:31:96:0.458:2	./.	./.	./.	0/1:43,30:32:73:0.411:2	./.
chr1	65323357	rs34597718	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,90:32:194:0.464:2	./.	./.	./.	./.	./.	./.
chr1	65335062	rs45598436	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,18:28:63:0.286:2	0/1:15,25:30:40:0.625:2	./.	./.	./.	./.	./.	./.	0/1:62,49:30:111:0.441:2	./.	./.
chr1	65614154	rs17853973	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,22:30:79:0.278:2	./.	./.	./.	./.	./.	./.
chr1	65656412	rs370616612	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr1	65684529	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,8:31:165:0.048:2
chr1	65690461	rs4915685	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,51:32:126:0.405:2	./.	0/1:77,69:32:146:0.473:2	0/1:91,79:32:170:0.465:2	./.	0/1:90,86:33:176:0.489:2	0/1:105,74:32:179:0.413:2
chr1	65691779	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	0/1:157,16:31:173:0.092:2
chr1	65845148	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,80:31:199:0.402:2	./.	./.	./.	./.	./.
chr1	65849887	rs61753391	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:33:190:0.537:2	./.	./.
chr1	65855065	rs142136708	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,65:32:137:0.474:2	./.	./.
chr1	65858145	rs4325172	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:67,43:32:110:0.391:2	0/1:28,20:32:48:0.417:2	./.	0/1:3,128:32:131:0.977:2	0/1:74,73:31:147:0.497:2	0/1:0,99:32:99:1.00:2	0/1:105,61:31:166:0.367:2	0/1:66,51:31:117:0.436:2	0/1:72,71:33:143:0.497:2	0/1:0,92:31:92:1.00:2	0/1:0,99:32:99:1.00:2
chr1	65858151	rs11208644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:31:176:0.034:2	./.	./.	./.	./.
chr1	65860687	rs4582839	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,19:32:46:0.413:2	0/1:13,15:32:28:0.536:2	./.	0/1:0,43:32:43:1.00:2	0/1:17,14:32:31:0.452:2	0/1:0,47:32:47:1.00:2	0/1:10,24:32:34:0.706:2	0/1:38,22:32:60:0.367:2	0/1:0,32:33:32:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,42:32:42:1.00:2
chr1	65867519	rs4915691	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:32:29:0.586:2	./.	./.
chr1	65886398	rs3790435	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,7:31:32:0.219:2	./.	./.	0/1:0,45:32:45:1.00:2	./.	0/1:0,41:32:41:1.00:2	./.	./.	./.	0/1:0,32:31:32:1.00:2	0/1:21,9:31:30:0.300:2
chr1	65886448	rs3790434	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,13:28:36:0.361:2	./.	./.	0/1:0,57:29:57:1.00:2	./.	0/1:0,47:28:47:1.00:2	./.	./.	./.	0/1:0,18:27:18:1.00:2	0/1:21,11:26:32:0.344:2
chr1	66036441	rs1137100	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:27,23:33:50:0.460:2	./.	0/1:20,29:32:49:0.592:2	./.	./.	./.	0/1:19,17:33:36:0.472:2	0/1:30,30:33:60:0.500:2
chr1	66058513	rs1137101	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,41:31:92:0.446:2	0/1:31,16:30:47:0.340:2	0/1:4,4:30:8:0.500:2	0/1:48,36:31:84:0.429:2	./.	0/1:46,34:31:80:0.425:2	./.	./.	0/1:56,63:31:119:0.529:2	0/1:53,33:29:86:0.384:2	0/1:56,53:31:109:0.486:2
chr1	66067109	rs1805134	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,27:32:47:0.574:2	0/1:20,15:31:35:0.429:2	./.	./.	./.	./.	./.	./.	0/1:33,16:31:49:0.327:2	./.	0/1:45,41:30:87:0.477:2
chr1	66075952	rs1805094	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,39:29:83:0.470:2	0/1:30,38:29:68:0.559:2	./.	./.	./.	./.	0/1:28,12:28:40:0.300:2	0/1:47,39:29:86:0.453:2	0/1:63,51:30:114:0.447:2	./.	./.
chr1	66087116	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.
chr1	66102257	rs1805096	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,16:32:25:0.640:2	0/1:9,5:31:14:0.357:2	0/1:0,4:32:4:1.00:2	0/1:9,10:32:19:0.526:2	./.	0/1:15,9:31:24:0.375:2	0/1:11,9:30:20:0.450:2	0/1:9,5:33:14:0.357:2	0/1:0,38:33:38:1.00:2	0/1:5,10:32:15:0.667:2	./.
chr1	66384438	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.
chr1	66713196	rs75398902	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:33:87:0.540:2	./.	./.	./.
chr1	66732386	rs6588194	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,11:32:29:0.379:2	0/1:11,11:32:22:0.500:2	0/1:8,3:32:11:0.273:2	0/1:27,21:31:48:0.438:2	0/1:25,3:30:28:0.107:2	0/1:0,39:31:39:1.00:2	0/1:49,15:32:64:0.234:2	./.	0/1:34,23:32:57:0.404:2	0/1:0,37:32:37:1.00:2	0/1:2,55:32:57:0.965:2
chr1	66831370	rs783036	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,27:32:86:0.314:2	0/1:20,15:32:35:0.429:2	0/1:9,7:32:16:0.438:2	0/1:0,110:30:110:1.00:2	0/1:49,40:31:89:0.449:2	0/1:45,47:31:92:0.511:2	./.	0/1:70,53:31:123:0.431:2	0/1:2,124:32:126:0.984:2	0/1:57,42:31:99:0.424:2	0/1:62,62:31:124:0.500:2
chr1	67109277	rs17490057	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,62:32:133:0.470:2
chr1	67109335	rs7526812	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,39:33:96:0.406:2	./.	0/1:77,60:33:137:0.438:2	./.	./.
chr1	67137687	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:29:93:0.044:2	./.	./.	./.
chr1	67154850	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,11:16:108:0.102:2	./.
chr1	67236097	rs1060575	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,73:32:74:0.986:2	0/1:0,31:31:31:1.00:2	./.	./.	./.	./.	./.	./.	0/1:39,34:33:73:0.466:2	./.	./.
chr1	67242087	rs3816989	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,75:32:76:0.987:2	0/1:0,40:31:40:1.00:2	./.	./.	./.	./.	./.	./.	0/1:40,44:32:84:0.524:2	./.	./.
chr1	67243024	rs2133173	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,27:31:83:0.325:2	0/1:1,97:31:98:0.990:2	./.	./.	./.	./.	0/1:58,51:32:109:0.468:2
chr1	67266756	rs549148	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,9:32:9:1.00:2	0/1:2,50:33:52:0.962:2	0/1:32,23:32:55:0.418:2	./.	0/1:40,20:33:60:0.333:2	0/1:0,38:33:38:1.00:2	0/1:45,24:33:69:0.348:2	0/1:0,37:33:37:1.00:2	0/1:0,69:33:69:1.00:2
chr1	67288045	rs482082	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,23:33:56:0.411:2	0/1:14,15:32:29:0.517:2	./.	0/1:27,38:33:65:0.585:2	0/1:0,49:31:49:1.00:2	0/1:1,64:32:65:0.985:2	0/1:21,21:32:42:0.500:2	0/1:25,25:31:50:0.500:2	0/1:0,65:33:65:1.00:2	0/1:0,43:33:43:1.00:2	0/1:31,45:33:76:0.592:2
chr1	67313249	rs57010209	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.	0/1:42,29:32:71:0.408:2	./.	./.
chr1	67356917	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	67356918	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	67390416	rs3008858	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,75:30:75:1.00:2	0/1:50,46:31:96:0.479:2	0/1:37,41:31:78:0.526:2	0/1:0,73:29:73:1.00:2	0/1:45,38:29:83:0.458:2
chr1	67390468	rs1886686	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,39:32:40:1.00:2	0/1:27,34:32:61:0.557:2	0/1:21,25:33:46:0.543:2	0/1:0,36:33:36:1.00:2	0/1:42,22:31:64:0.344:2
chr1	67518534	rs10157422	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,45:31:86:0.523:2	./.	./.	./.	./.	./.	./.	./.
chr1	67558739	rs6588237	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:1,38:31:39:0.974:2	0/1:0,6:30:6:1.00:2	0/1:1,77:31:78:0.987:2	0/1:0,43:30:43:1.00:2	0/1:0,83:31:83:1.00:2	0/1:37,22:31:59:0.373:2	0/1:0,61:30:61:1.00:2	0/1:50,45:30:96:0.474:2	0/1:0,54:32:54:1.00:2	0/1:0,132:32:133:1.00:2
chr1	67558790	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:27:200:0.025:2
chr1	67559023	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2
chr1	67560956	rs11208997	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:32:158:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,16:31:16:1.00:2	0/1:1,180:32:181:0.994:2	0/1:1,116:31:117:0.991:2	0/1:0,160:31:160:1.00:2	0/1:93,84:31:177:0.475:2	0/1:0,188:32:188:1.00:2	0/1:89,102:32:191:0.534:2	0/1:0,149:31:149:1.00:2	0/1:0,192:32:192:1.00:2
chr1	67633812	rs1884444	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,38:31:79:0.481:2	0/1:25,32:32:57:0.561:2	0/1:4,8:31:12:0.667:2	0/1:0,99:31:99:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,118:30:118:1.00:2	./.	./.	./.	0/1:0,87:32:87:1.00:2	0/1:52,78:32:130:0.600:2
chr1	67635262	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.
chr1	67685364	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:32:31:0.484:2	0/1:19,7:31:26:0.269:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	67685387	rs7530511	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,15:27:15:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,67:28:67:1.00:2
chr1	67792499	rs17129792	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	67795319	rs1495963	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:30:61:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,74:29:74:1.00:2
chr1	67833527	rs2307145	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,54:30:94:0.574:2	./.	./.	./.	./.	./.
chr1	67833643	rs2307153	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,26:29:51:0.510:2	./.	./.	./.	./.	./.	./.
chr1	67852335	rs2228420	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,75:31:156:0.481:2	0/1:57,36:31:93:0.387:2	./.	0/1:76,59:31:135:0.437:2	0/1:1,128:31:130:0.992:2	0/1:79,54:31:133:0.406:2	./.	0/1:69,55:31:124:0.444:2	0/1:1,124:32:125:0.992:2	0/1:0,142:32:142:1.00:2	0/1:0,131:32:131:1.00:2
chr1	67861348	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:32:64:0.460:2	./.	./.	./.	./.	./.
chr1	67861520	rs2229546	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,34:32:63:0.540:2	0/1:18,10:32:28:0.357:2	./.	0/1:40,35:32:75:0.467:2	0/1:0,60:32:60:1.00:2	0/1:0,72:32:72:1.00:2	0/1:55,54:32:109:0.495:2	0/1:1,83:33:84:0.988:2	0/1:0,72:32:72:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,67:31:67:1.00:2
chr1	67878898	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.
chr1	67891911	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,8:31:136:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr1	67891922	rs147465839	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:141:0.029:2	./.	./.	./.
chr1	68512441	rs61736596	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:51,42:32:93:0.452:2	0/1:32,30:33:62:0.484:2	./.	./.	./.	./.	./.	0/1:52,55:32:107:0.514:2	0/1:48,74:34:122:0.607:2	./.	./.
chr1	68512899	rs35600387	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,20:30:34:0.588:2	0/1:13,14:31:27:0.519:2	./.	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	0/1:21,30:30:51:0.588:2	./.	./.
chr1	68603586	rs983034	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,29:31:78:0.377:2	0/1:25,24:31:49:0.490:2	./.	0/1:46,52:31:98:0.531:2	./.	0/1:61,65:30:126:0.516:2	0/1:7,107:31:114:0.939:2	./.	0/1:60,59:32:119:0.496:2	./.	./.
chr1	68614320	rs17130529	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:31:76:0.461:2	./.	./.	./.
chr1	68624878	rs3748705	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,32:31:74:0.432:2	0/1:26,15:32:41:0.366:2	0/1:2,6:32:8:0.750:2	./.	0/1:0,69:32:69:1.00:2	./.	./.	0/1:71,48:31:119:0.403:2	0/1:61,45:33:107:0.425:2	0/1:51,38:32:90:0.427:2	0/1:49,32:33:81:0.395:2
chr1	68649258	rs147113488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:29:32:0.438:2	./.	./.	./.
chr1	68903942	rs12145904	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	0/1:27,27:31:54:0.500:2	./.	./.	./.	./.	./.
chr1	68904671	rs61752905	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	68944633	rs12759438	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,38:32:118:0.322:2	./.	./.	0/1:62,38:32:100:0.380:2	./.	./.	./.	./.
chr1	68944964	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2
chr1	68954178	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	0/1:76,6:32:82:0.073:2	./.	./.	./.
chr1	68960177	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:145,5:33:150:0.033:2	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.
chr1	68960179	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:147,5:32:152:0.033:2	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.
chr1	68960278	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,5:33:184:0.027:2	./.	./.	./.	./.	./.	./.
chr1	70034372	rs1773351	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	0/1:0,12:33:12:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.
chr1	70397192	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.
chr1	70397245	rs140920935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.
chr1	70460238	rs12035355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:34:32:0.531:2	./.	./.
chr1	70504932	rs199521356	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,4:25:24:0.167:2	./.	./.	./.	./.	./.	./.	0/1:15,6:17:21:0.286:2	./.	0/1:17,7:18:24:0.292:2	0/1:19,6:24:25:0.240:2
chr1	70573459	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.	./.	./.	./.	./.	./.
chr1	70625069	rs17266340	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,89:32:200:0.445:2	./.	./.
chr1	70820008	rs61782675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.	./.	./.	./.
chr1	70820880	rs55863806	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:32:30:0.467:2	./.	./.	./.	./.
chr1	70832181	rs371348009	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,15:31:28:0.536:2	./.	./.	./.	./.	./.	./.
chr1	70904800	rs1021737	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,37:31:70:0.529:2	0/1:71,53:31:124:0.427:2	./.	./.	./.	0/1:72,40:32:112:0.357:2	./.
chr1	71331430	rs5702	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,41:33:70:0.586:2	0/1:34,20:33:54:0.370:2	./.	./.	./.	./.	0/1:3,76:33:79:0.962:2	./.	./.	0/1:1,73:33:74:0.986:2	./.
chr1	71331498	rs1409986	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,23:32:23:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,31:32:32:1.00:2
chr1	71419499	rs571705	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:33:14:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:4,3:31:7:0.429:2	0/1:0,10:30:10:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,12:30:12:1.00:2	0/1:20,10:32:30:0.333:2
chr1	71512639	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,8:15:27:0.296:2	./.	./.	0/1:48,11:17:59:0.186:2	./.	./.	./.	0/1:31,4:26:35:0.114:2
chr1	71512643	rs5671	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,33:31:50:0.660:2	./.	./.	./.	./.	./.	./.
chr1	71513150	rs5669	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	71513218	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,18:11:105:0.171:2	./.	0/1:91,21:14:112:0.188:2	./.	./.	./.
chr1	71536549	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.
chr1	71536574	rs11583800	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:31:13:0.308:2	0/1:30,18:33:48:0.375:2	./.	./.	./.	0/1:48,30:32:78:0.385:2	./.	./.	./.
chr1	71538191	rs11556475	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,45:32:102:0.441:2	./.	./.	./.	./.	./.	./.
chr1	71544332	rs74090254	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	72058552	rs1413368	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:33:111:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,151:32:151:1.00:2	0/1:1,194:31:195:0.995:2	0/1:0,189:32:189:1.00:2	0/1:1,164:32:165:0.994:2	0/1:0,159:32:159:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,141:32:141:1.00:2
chr1	74507284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.	./.
chr1	74575182	rs1340472	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,18:31:18:1.00:2	0/1:3,8:31:11:0.727:2	0/1:0,41:31:41:1.00:2	0/1:27,5:31:32:0.156:2	0/1:0,40:31:40:1.00:2	0/1:0,13:32:13:1.00:2	0/1:37,13:32:50:0.260:2	0/1:0,69:32:69:1.00:2	0/1:0,33:32:33:1.00:2	./.
chr1	74575201	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:30:59:0.492:2	./.	./.
chr1	74648329	rs17591320	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:30:53:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr1	74665493	rs792310	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,53:33:53:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:1,50:32:51:0.980:2	./.	0/1:32,19:30:51:0.373:2	0/1:0,23:32:23:1.00:2	0/1:28,23:30:51:0.451:2	./.	0/1:0,22:32:22:1.00:2	./.
chr1	74670172	rs12046751	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	0/1:32,23:32:55:0.418:2	./.	./.	0/1:0,66:34:66:1.00:2	./.	./.
chr1	74808801	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,91:32:193:0.472:2
chr1	74819712	rs142183632	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,88:32:183:0.484:2	./.	./.	./.	./.	./.	./.
chr1	74901829	rs45589143	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,86:33:167:0.515:2	./.	./.
chr1	74941060	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,26:32:44:0.591:2	./.	./.	./.	./.	./.	./.
chr1	74941210	rs648614	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,38:33:95:0.400:2	0/1:79,71:33:150:0.473:2	0/1:91,67:33:158:0.424:2	0/1:2,95:33:97:0.979:2	0/1:100,77:33:177:0.435:2
chr1	74941293	rs649058	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	0/1:112,82:32:195:0.423:2	0/1:81,116:31:197:0.589:2	0/1:107,85:32:192:0.443:2	0/1:0,186:32:186:1.00:2	0/1:107,78:32:185:0.422:2
chr1	74954952	rs142942027	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:33:51:0.451:2	./.	./.	./.	./.
chr1	75036812	rs9326116	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,44:32:44:1.00:2	0/1:1,21:32:22:0.955:2	0/1:0,32:32:32:1.00:2
chr1	75036881	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.	./.	./.
chr1	75037845	rs12723334	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,73:31:138:0.529:2	0/1:42,31:30:73:0.425:2	0/1:10,6:30:16:0.375:2	0/1:1,130:31:131:0.992:2	0/1:92,58:30:150:0.387:2	0/1:87,60:30:147:0.408:2	./.	0/1:108,68:30:176:0.386:2	./.	./.	0/1:4,154:30:158:0.975:2
chr1	75038228	rs11580409	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,66:32:128:0.516:2	0/1:30,66:32:96:0.688:2	0/1:3,11:33:14:0.786:2	0/1:0,178:33:178:1.00:2	0/1:43,42:32:85:0.494:2	0/1:71,72:32:143:0.503:2	0/1:104,4:31:108:0.037:2	0/1:74,91:32:165:0.552:2	./.	./.	0/1:1,182:33:183:0.995:2
chr1	75038964	rs41289214	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:32:57:0.561:2	./.	./.
chr1	75055749	rs115339919	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.
chr1	75065441	rs696698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,96:33:194:0.495:2	./.	./.
chr1	75097426	rs11210490	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,95:32:199:0.477:2	0/1:59,54:32:113:0.478:2	0/1:15,5:32:20:0.250:2	0/1:96,102:33:198:0.515:2	0/1:62,84:32:146:0.575:2	0/1:114,77:32:191:0.403:2	0/1:3,169:32:172:0.983:2	0/1:109,82:32:191:0.429:2	0/1:107,90:33:199:0.457:2	0/1:3,195:33:198:0.985:2	./.
chr1	75097574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,5:28:167:0.030:2	./.
chr1	75172001	rs7527057	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,58:31:109:0.532:2	0/1:27,28:30:55:0.509:2	0/1:9,9:30:18:0.500:2	0/1:55,55:30:110:0.500:2	0/1:41,45:29:86:0.523:2	0/1:55,41:30:96:0.427:2	./.	0/1:3,94:30:97:0.969:2	0/1:0,79:31:79:1.00:2	0/1:35,37:31:72:0.514:2	0/1:80,64:30:144:0.444:2
chr1	75175797	rs57413593	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	75175886	rs3819946	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,64:32:119:0.542:2	0/1:44,44:32:88:0.500:2	0/1:61,50:32:111:0.450:2	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.
chr1	75185037	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:31:50:0.620:2	./.	./.	./.	./.	./.
chr1	75190452	rs1051122	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:122:1.00:2	0/1:1,72:31:73:0.986:2	0/1:1,12:31:13:0.923:2	0/1:0,141:31:141:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,149:31:149:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,144:31:144:1.00:2	0/1:90,79:31:169:0.467:2	0/1:3,119:32:122:0.975:2	0/1:2,186:31:188:0.989:2
chr1	75199023	rs143670067	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,65:29:129:0.504:2	./.	./.	./.
chr1	75204447	rs11538281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	75214441	rs1133891	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,83:30:179:0.464:2	0/1:80,45:30:125:0.360:2	0/1:104,73:29:177:0.412:2	./.	./.	./.	./.	./.
chr1	75217990	rs61741065	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	75596388	rs41289234	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	0/1:24,11:31:35:0.314:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:33:55:0.400:2	0/1:43,43:32:86:0.500:2
chr1	75608973	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:34:46:0.087:2	./.	./.	./.	./.	./.
chr1	75622616	rs941032	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,46:31:105:0.438:2	0/1:81,38:31:119:0.319:2	0/1:0,85:31:85:1.00:2	0/1:52,80:32:132:0.606:2	0/1:66,70:32:136:0.515:2	0/1:66,48:32:114:0.421:2	./.	./.
chr1	75672376	rs1948874	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:40,37:32:77:0.481:2	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2	0/1:0,68:32:68:1.00:2	0/1:39,48:33:87:0.552:2	./.	0/1:2,96:32:98:0.980:2
chr1	75681511	rs595009	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,151:33:151:1.00:2	0/1:0,86:32:86:1.00:2	0/1:6,6:33:12:0.500:2	0/1:106,72:32:178:0.404:2	0/1:47,67:32:114:0.588:2	0/1:3,170:32:173:0.983:2	0/1:0,88:32:88:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,178:34:178:1.00:2	0/1:73,75:33:149:0.507:2	0/1:0,178:33:178:1.00:2
chr1	75693460	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:100:0.040:2	./.
chr1	75699771	rs10493565	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,25:32:66:0.379:2	0/1:23,13:30:36:0.361:2	./.	./.	0/1:26,16:31:42:0.381:2	0/1:34,39:30:74:0.534:2	0/1:36,30:31:66:0.455:2	./.	0/1:45,29:32:74:0.392:2	0/1:49,25:31:74:0.338:2	./.
chr1	75702674	rs17096508	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,58:30:142:0.408:2	0/1:118,78:30:196:0.398:2	0/1:107,68:30:175:0.389:2	./.	0/1:103,92:32:195:0.472:2	./.	./.
chr1	75716925	rs588098	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,36:31:107:0.336:2	0/1:12,33:31:45:0.733:2	0/1:5,9:30:14:0.643:2	0/1:0,94:30:94:1.00:2	0/1:50,29:29:79:0.367:2	0/1:76,47:30:123:0.382:2	0/1:68,51:30:119:0.429:2	0/1:0,146:30:146:1.00:2	0/1:73,53:31:126:0.421:2	0/1:55,63:31:118:0.534:2	0/1:0,90:30:90:1.00:2
chr1	76198785	rs3818855	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,72:32:171:0.421:2	./.	./.	0/1:95,83:31:178:0.466:2	0/1:115,81:31:196:0.413:2	./.	0/1:121,72:32:193:0.373:2	./.
chr1	76211574	rs149678400	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:31:28:0.321:2	./.	./.	./.	./.	./.	./.	./.
chr1	76227022	rs1061337	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,24:32:53:0.453:2	./.	./.	0/1:14,26:33:40:0.650:2	0/1:33,25:31:58:0.431:2	./.	0/1:20,23:32:43:0.535:2	./.
chr1	76257892	rs12703	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:0,46:32:46:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,63:33:63:1.00:2	0/1:47,33:32:80:0.413:2	0/1:0,69:32:69:1.00:2
chr1	76269460	rs5745325	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:30,23:31:53:0.434:2	0/1:23,17:31:40:0.425:2	0/1:1,3:30:4:0.750:2	./.	./.	0/1:31,39:30:70:0.557:2	./.	./.	0/1:35,38:31:73:0.521:2	./.	0/1:46,34:31:80:0.425:2
chr1	76344705	rs5745448	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,29:33:44:0.659:2	0/1:6,17:31:23:0.739:2	0/1:29,17:33:46:0.370:2	0/1:25,13:32:38:0.342:2	./.	0/1:24,19:33:43:0.442:2	./.	0/1:19,40:32:59:0.678:2
chr1	76344711	rs5745449	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,4:31:4:1.00:2	0/1:18,31:31:49:0.633:2	0/1:0,23:31:23:1.00:2	0/1:0,46:31:46:1.00:2	0/1:22,19:32:41:0.463:2	0/1:18,20:31:38:0.526:2	0/1:0,44:33:44:1.00:2	0/1:14,12:32:26:0.462:2	0/1:0,62:32:62:1.00:2
chr1	76378502	rs5745549	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,22:32:43:0.512:2	0/1:15,10:31:25:0.400:2	./.	./.	0/1:17,12:30:29:0.414:2	./.	./.	0/1:22,38:31:60:0.633:2	./.	./.	./.
chr1	76384669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,6:31:85:0.071:2	./.	./.	./.	./.	./.
chr1	76397719	rs182689417	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,27:32:72:0.375:2	./.	./.	./.	./.
chr1	76397972	rs3795251	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:32:23:0.522:2	0/1:8,8:32:16:0.500:2	0/1:11,13:31:24:0.542:2	0/1:13,9:31:22:0.409:2	./.	0/1:11,4:33:15:0.267:2	./.	0/1:20,13:31:33:0.394:2
chr1	77042567	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,54:30:109:0.500:2	0/1:23,25:31:48:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	77093180	rs1184626	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,49:32:101:0.485:2	0/1:33,23:32:56:0.411:2	0/1:0,17:31:17:1.00:2	./.	0/1:64,71:31:135:0.526:2	./.	0/1:68,49:32:117:0.419:2	0/1:58,64:32:122:0.525:2	0/1:3,151:33:154:0.981:2	0/1:49,56:32:105:0.533:2	0/1:1,108:32:109:0.991:2
chr1	77333355	rs76305167	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,42:30:86:0.494:2	./.	./.	./.	./.
chr1	77334268	rs114586767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,55:29:81:0.679:2	./.	./.	./.	./.
chr1	77528805	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	77558145	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.
chr1	77634948	rs1779199	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,47:32:47:1.00:2
chr1	77759578	rs2815311	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,41:28:79:0.519:2	0/1:53,53:29:106:0.500:2	./.	./.	./.
chr1	77763542	rs1167206	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,38:31:38:1.00:2
chr1	77883412	rs1532507	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	0/1:5,6:32:11:0.545:2	./.	./.
chr1	78024284	rs6675743	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,22:32:58:0.379:2	0/1:28,15:32:43:0.349:2	./.	./.	0/1:0,30:31:30:1.00:2	0/1:37,22:32:59:0.373:2	0/1:2,39:32:41:0.951:2	0/1:2,52:31:54:0.963:2	0/1:40,41:33:81:0.506:2	0/1:0,56:33:56:1.00:2	0/1:1,100:32:101:0.990:2
chr1	78097795	rs142300734	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:29:110:0.382:2	./.	./.	./.	./.	./.
chr1	78098003	rs41292270	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:84,81:33:165:0.491:2	0/1:60,37:32:97:0.381:2	./.	./.	./.	./.	./.	./.	./.	0/1:92,82:32:174:0.471:2	./.
chr1	78098153	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.
chr1	78098251	rs368611525	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:31:94:0.436:2	./.
chr1	78099027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.
chr1	78163080	rs34351666	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	78178976	rs6603958	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,31:32:57:0.544:2	0/1:15,19:32:34:0.559:2	0/1:0,8:32:8:1.00:2	0/1:1,27:31:28:0.964:2	./.	0/1:35,27:31:62:0.435:2	0/1:16,17:32:33:0.515:2	./.	0/1:25,23:32:48:0.479:2	./.	./.
chr1	78184325	rs12142671	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,36:33:96:0.375:2	0/1:32,26:32:58:0.448:2	0/1:4,8:33:12:0.667:2	0/1:2,58:33:60:0.967:2	./.	0/1:42,30:32:72:0.417:2	0/1:31,28:32:59:0.475:2	./.	0/1:25,36:34:61:0.590:2	./.	./.
chr1	78187739	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,7:29:112:0.063:2	./.	./.
chr1	78187797	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.
chr1	78194266	rs186381561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,83:33:195:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr1	78201745	rs2296227	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,35:32:64:0.547:2	0/1:17,22:32:39:0.564:2	0/1:0,13:32:13:1.00:2	0/1:0,73:31:73:1.00:2	0/1:73,4:32:77:0.052:2	0/1:45,42:31:87:0.483:2	0/1:38,11:32:49:0.224:2	./.	0/1:47,35:32:82:0.427:2	./.	./.
chr1	78332017	rs189491314	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:33:21:0.238:2	./.	./.	./.	./.
chr1	78383874	rs35117963	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	78392446	rs1166698	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2	0/1:37,36:32:73:0.493:2	0/1:25,35:33:60:0.583:2	0/1:1,51:32:52:0.981:2	./.	0/1:25,25:32:50:0.500:2	0/1:62,34:32:96:0.354:2
chr1	78407854	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:34:115:0.035:2
chr1	78429765	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.
chr1	78585086	rs540742	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,17:31:43:0.395:2	0/1:11,14:30:25:0.560:2	0/1:0,12:28:12:1.00:2	./.	0/1:16,17:30:33:0.515:2	0/1:0,43:30:43:1.00:2	./.	0/1:1,45:30:46:0.978:2	./.	0/1:22,27:30:49:0.551:2	./.
chr1	78958491	rs35227129	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,28:33:65:0.431:2	./.	./.	0/1:38,22:31:60:0.367:2	0/1:27,36:31:63:0.571:2	./.	./.	./.
chr1	79093818	rs273259	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,16:31:34:0.471:2	0/1:21,14:30:35:0.400:2	./.	./.	0/1:19,22:29:41:0.537:2	./.	0/1:18,23:29:41:0.561:2	./.	0/1:0,59:30:59:1.00:2	0/1:31,15:31:46:0.326:2	./.
chr1	79095526	rs3820093	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:30:24:0.458:2	./.	./.	./.	./.	./.	./.
chr1	79095581	rs987495	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	0/1:13,17:31:30:0.567:2	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.	0/1:1,47:32:48:0.979:2	0/1:22,15:32:37:0.405:2	./.
chr1	79095682	rs185745103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:30:24:0.583:2	./.	./.	./.	./.	./.	./.
chr1	79101163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:32:57:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr1	79357360	rs2275902	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:12,27:31:39:0.692:2	./.	0/1:21,29:31:50:0.580:2	./.	0/1:18,27:31:45:0.600:2	0/1:13,8:34:21:0.381:2	./.	./.
chr1	79392625	rs188452531	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	79392756	rs12754818	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:23,18:32:41:0.439:2	0/1:0,29:31:29:1.00:2	0/1:43,16:31:59:0.271:2	0/1:16,10:32:26:0.385:2	0/1:25,21:32:46:0.457:2	0/1:40,17:30:57:0.298:2	0/1:26,13:32:39:0.333:2	0/1:23,19:31:42:0.452:2
chr1	79404913	rs186323604	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,56:32:122:0.463:2	./.	./.	./.	./.	./.
chr1	82409373	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.
chr1	82415982	rs138125465	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:32:62:0.419:2	./.
chr1	82416019	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.
chr1	82417696	rs141619218	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:34:66:0.455:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	82417719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,5:32:119:0.042:2	./.	./.	./.	./.	./.	./.
chr1	82417739	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.
chr1	82421596	rs11163397	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:33:105:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,142:33:142:1.00:2
chr1	82433819	rs145464208	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,42:32:100:0.420:2	./.	./.	./.	./.
chr1	82450365	rs41292982	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	./.
chr1	82453022	rs76995529	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,29:32:88:0.330:2	./.	./.	./.
chr1	82456585	rs41292984	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,37:32:76:0.487:2	0/1:20,20:32:40:0.500:2	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.	./.	./.	./.	./.
chr1	84640691	rs582201	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:33:120:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,136:32:136:1.00:2	0/1:1,177:33:178:0.994:2	0/1:1,167:32:168:0.994:2	0/1:0,170:33:170:1.00:2
chr1	84765360	rs1625305	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr1	84791374	rs55638637	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,72:31:165:0.436:2	0/1:53,56:32:109:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	84864256	rs3738573	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,33:32:60:0.550:2	0/1:21,9:32:30:0.300:2	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	0/1:48,25:32:73:0.342:2	0/1:29,37:33:66:0.561:2	0/1:14,27:32:41:0.659:2	0/1:35,29:31:66:0.453:2
chr1	84867610	rs3754274	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,5:31:25:0.200:2	./.	./.	0/1:20,28:32:48:0.583:2	./.
chr1	84878228	rs7511984	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.
chr1	84880380	rs3768250	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:84,44:30:128:0.344:2	0/1:41,31:28:72:0.431:2	./.	./.	./.	./.	0/1:68,47:30:115:0.409:2	./.	./.	0/1:77,61:30:138:0.442:2	./.
chr1	84944989	rs2292191	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,15:30:28:0.536:2	0/1:6,11:29:17:0.647:2	0/1:2,5:29:7:0.714:2	0/1:28,17:30:45:0.378:2	0/1:0,47:29:47:1.00:2	0/1:16,16:30:34:0.500:2	0/1:33,17:30:50:0.340:2	0/1:1,37:30:38:0.974:2	0/1:26,32:30:58:0.552:2	./.	./.
chr1	84961108	rs7528067	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,35:32:66:0.530:2	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	0/1:9,16:29:25:0.640:2	./.	./.	./.	./.
chr1	84982061	rs375737896	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:32:47:0.340:2	0/1:20,11:32:31:0.355:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	84991669	rs10493753	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:66,41:33:107:0.383:2	0/1:37,20:32:57:0.351:2	./.	./.	./.	./.	0/1:30,17:33:47:0.362:2	./.	./.	./.	./.
chr1	84999411	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	85009894	rs12143652	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:33:13:0.462:2	0/1:45,43:33:88:0.489:2	./.	0/1:47,48:32:95:0.505:2	./.	./.	0/1:47,49:34:96:0.510:2	0/1:1,91:32:92:0.989:2	0/1:62,39:33:101:0.386:2
chr1	85014628	rs184975244	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,44:30:82:0.537:2	0/1:23,19:31:42:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	85016177	rs1400777	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,68:32:137:0.496:2	0/1:51,39:31:90:0.433:2	0/1:11,15:32:26:0.577:2	0/1:109,68:33:177:0.384:2	./.	0/1:79,68:32:147:0.463:2	0/1:64,41:32:105:0.390:2	./.	0/1:81,99:34:180:0.550:2	0/1:1,123:33:125:0.992:2	0/1:1,176:33:179:0.994:2
chr1	85020769	rs138861244	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,47:32:109:0.431:2	0/1:33,29:32:62:0.468:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	85029077	rs15911	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:34,22:31:56:0.393:2	./.	0/1:31,22:31:53:0.415:2	./.	./.	0/1:35,37:32:72:0.514:2	0/1:0,41:31:41:1.00:2	0/1:38,23:32:61:0.377:2
chr1	85029432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2
chr1	85031630	rs2994953	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,20:31:31:0.645:2	0/1:67,60:32:128:0.472:2	./.	0/1:95,54:31:149:0.362:2	./.	./.	0/1:92,48:32:140:0.343:2	0/1:0,142:32:142:1.00:2	0/1:67,67:31:134:0.500:2
chr1	85039955	rs2303307	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:30:10:0.500:2	0/1:41,24:29:65:0.369:2	./.	0/1:35,34:29:69:0.493:2	./.	./.	0/1:30,43:30:73:0.589:2	0/1:0,66:30:66:1.00:2	0/1:42,28:30:70:0.400:2
chr1	85040069	rs2911592	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	0/1:4,4:31:8:0.500:2	./.	./.	0/1:4,3:30:7:0.429:2	0/1:0,12:28:12:1.00:2	./.
chr1	85040070	rs115347546	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	0/1:4,4:32:8:0.500:2	./.	./.	0/1:4,3:31:7:0.429:2	0/1:0,12:31:12:1.00:2	./.
chr1	85113203	rs2994949	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,92:30:180:0.511:2	0/1:61,54:29:115:0.470:2	0/1:0,30:30:30:1.00:2	0/1:0,185:30:185:1.00:2	0/1:113,62:29:175:0.354:2	0/1:93,97:30:190:0.511:2	0/1:0,137:29:137:1.00:2	0/1:3,172:29:175:0.983:2	0/1:0,175:30:175:1.00:2	0/1:1,154:30:155:0.994:2	0/1:2,178:30:180:0.989:2
chr1	85113229	rs1057746	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,93:30:192:0.484:2	0/1:61,46:29:107:0.430:2	0/1:0,30:30:30:1.00:2	0/1:118,66:30:184:0.359:2	0/1:101,61:29:162:0.377:2	./.	0/1:68,79:29:147:0.537:2	0/1:0,162:30:162:1.00:2	0/1:0,164:31:164:1.00:2	0/1:80,86:30:166:0.518:2	0/1:1,177:30:178:0.994:2
chr1	85486765	rs12123273	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:31:40:0.525:2	./.	./.	./.	./.	./.
chr1	85488030	rs2028304	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:32:145:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,147:31:147:1.00:2	0/1:70,39:31:109:0.358:2	0/1:0,141:31:141:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,121:32:121:1.00:2	0/1:90,69:32:159:0.434:2
chr1	85498642	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:29:39:0.103:2	./.	./.	./.	./.	./.	./.
chr1	85537706	rs17099213	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,8:33:33:0.242:2	./.	./.	./.	./.	0/1:38,10:32:48:0.208:2	./.
chr1	85550349	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:34:72:0.056:2	./.
chr1	85589842	rs17121745	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,74:33:197:0.376:2	./.	./.	./.	./.	./.	0/1:104,84:32:188:0.447:2	0/1:102,88:33:190:0.463:2
chr1	85592334	rs79751387	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,41:32:81:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr1	85594392	rs2305930	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:33:53:0.509:2	./.	./.	./.	./.	./.	0/1:16,26:33:42:0.619:2	0/1:54,38:32:92:0.413:2
chr1	85594412	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	./.
chr1	85594466	rs709783	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,84:30:86:0.977:2	0/1:2,53:31:55:0.964:2	./.	./.	0/1:52,37:30:89:0.416:2	./.	0/1:51,34:31:85:0.400:2	./.	0/1:63,66:31:129:0.512:2	0/1:53,47:31:100:0.470:2	0/1:165,5:31:171:0.029:2
chr1	85624549	rs709786	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,137:32:137:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,153:31:153:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,187:33:187:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,186:32:186:1.00:2
chr1	85624661	rs74980814	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,46:32:78:0.590:2	./.	./.	./.	./.	./.	./.	./.
chr1	85624864	rs817412	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,58:31:58:1.00:2
chr1	85634892	rs61752463	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,31:33:68:0.456:2	./.	./.	./.	./.	./.	./.	./.
chr1	85647868	rs17122989	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,48:33:93:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr1	85648620	rs817443	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,5:27:5:1.00:2	0/1:1,61:32:62:0.984:2	0/1:0,49:31:49:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,82:32:82:1.00:2
chr1	85655916	rs56191061	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,48:30:125:0.384:2	./.	./.	./.	./.	./.	0/1:67,46:31:113:0.407:2	./.
chr1	85655931	rs61756695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,65:32:111:0.586:2	./.	./.	./.	./.	./.	./.	./.
chr1	85666156	rs12121540	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,28:31:59:0.475:2	0/1:6,15:31:21:0.714:2	./.	0/1:25,19:30:44:0.432:2	./.	0/1:23,19:31:42:0.452:2	./.	./.	./.	./.	./.
chr1	85724283	rs75989026	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,52:32:100:0.520:2	./.
chr1	85724328	rs4949926	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,41:30:71:0.577:2	0/1:34,24:30:58:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2
chr1	85725290	rs199663822	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:29:41:0.390:2
chr1	85733374	rs3768235	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:31:47:0.426:2	./.	./.	./.	./.	./.
chr1	85742012	rs11576939	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,23:31:59:0.390:2	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	0/1:56,35:32:91:0.385:2	0/1:49,28:32:77:0.364:2	0/1:35,41:33:76:0.539:2	0/1:46,33:32:79:0.418:2	0/1:0,51:32:51:1.00:2
chr1	85742023	rs12037217	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,43:32:73:0.589:2	./.
chr1	85790450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2
chr1	85816134	rs2230820	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	0/1:3,115:29:118:0.975:2	0/1:70,56:30:126:0.444:2	./.	./.	./.	./.	0/1:53,54:30:107:0.505:2
chr1	85824504	rs144734620	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,41:34:80:0.513:2	./.	./.
chr1	86047695	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.
chr1	86047909	rs9658586	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:30:65:0.415:2
chr1	86171959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:139:0.029:2	./.	./.	./.	./.
chr1	86173943	rs17399721	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,13:30:30:0.433:2	./.	0/1:15,6:27:21:0.286:2	./.	./.	./.	./.	./.
chr1	86203145	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.
chr1	86210411	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,5:28:107:0.047:2	0/1:147,8:22:155:0.052:2	./.	./.	./.	./.	0/1:185,7:23:192:0.036:2
chr1	86361588	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	86375654	rs1502657	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,8:31:32:0.250:2	0/1:0,25:32:25:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,28:32:28:1.00:2	0/1:2,35:33:37:0.946:2	0/1:20,20:33:40:0.500:2	0/1:0,23:32:23:1.00:2	0/1:0,42:32:42:1.00:2
chr1	86487914	rs11161721	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:31:19:0.579:2	./.	0/1:2,136:30:138:0.986:2	0/1:113,66:30:179:0.369:2	0/1:115,65:31:180:0.361:2	./.	0/1:0,164:31:164:1.00:2	0/1:78,47:31:125:0.376:2	0/1:3,148:31:151:0.980:2
chr1	86487981	rs516213	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,57:32:114:0.500:2	0/1:33,32:32:65:0.492:2	0/1:8,7:32:15:0.467:2	0/1:0,84:31:84:1.00:2	0/1:0,62:31:62:1.00:2	0/1:66,46:31:112:0.411:2	0/1:0,57:31:57:1.00:2	0/1:72,47:31:119:0.395:2	0/1:0,92:32:92:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,109:32:109:1.00:2
chr1	86488232	rs641712	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,86:32:88:0.977:2	./.	./.	0/1:68,41:31:109:0.376:2	0/1:90,46:31:136:0.338:2	./.	0/1:43,25:32:68:0.368:2	./.
chr1	86512536	rs60891279	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	0/1:24,15:30:39:0.385:2	./.	./.	./.	0/1:0,112:32:112:1.00:2
chr1	86529390	rs12742014	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,45:31:45:1.00:2	0/1:81,47:31:128:0.367:2	0/1:53,23:32:76:0.303:2	./.	0/1:0,106:31:106:1.00:2	0/1:61,31:32:92:0.337:2	./.
chr1	86557967	rs11161732	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:27,26:31:53:0.491:2	0/1:0,23:32:23:1.00:2	0/1:31,11:31:42:0.262:2	0/1:0,70:32:70:1.00:2	./.	0/1:1,72:32:73:0.986:2
chr1	86590582	rs80262773	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,23:32:38:0.605:2	./.	./.	./.	./.	./.	./.	./.
chr1	86590915	rs2174767	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:32:140:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,185:31:185:1.00:2	0/1:0,141:31:141:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,188:32:188:1.00:2	0/1:0,162:31:162:1.00:2	0/1:0,189:32:189:1.00:2
chr1	86590948	rs11161746	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:29:19:0.158:2	./.	./.	./.	./.	0/1:100,97:30:197:0.492:2	./.	./.	./.
chr1	86591036	rs56046090	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,48:31:136:0.353:2	./.	./.	./.	./.	./.	./.	./.
chr1	86591837	rs11161747	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:1,4:31:5:0.800:2	0/1:0,9:32:9:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,16:31:16:1.00:2	0/1:4,3:31:7:0.429:2	0/1:0,15:32:15:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,11:32:11:1.00:2
chr1	86818572	rs272496	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:119,74:33:193:0.383:2	0/1:92,59:32:151:0.391:2	./.	0/1:101,91:33:192:0.474:2	0/1:105,82:32:187:0.439:2	0/1:93,96:32:189:0.508:2	0/1:4,155:33:159:0.975:2	0/1:1,191:32:192:0.995:2	0/1:2,172:34:174:0.989:2	0/1:94,92:33:186:0.495:2	0/1:105,89:33:195:0.459:2
chr1	86820267	rs1182098	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,48:32:95:0.505:2	0/1:29,30:32:59:0.508:2	0/1:3,4:31:7:0.571:2	0/1:43,64:32:107:0.598:2	0/1:29,27:31:56:0.482:2	0/1:69,71:31:140:0.507:2	0/1:2,66:31:68:0.971:2	0/1:1,117:31:118:0.992:2	0/1:2,96:33:98:0.980:2	0/1:58,51:32:109:0.468:2	0/1:80,65:32:145:0.448:2
chr1	86822231	rs385437	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,42:33:42:1.00:2	./.	./.
chr1	86824496	rs144381853	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,63:32:148:0.426:2	./.
chr1	86826169	rs12758659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,29:32:86:0.337:2	./.
chr1	86838158	rs421105	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:31:67:0.552:2	0/1:15,14:32:29:0.483:2	0/1:0,6:31:6:1.00:2	0/1:38,32:31:70:0.457:2	0/1:19,27:31:46:0.587:2	0/1:42,23:31:65:0.354:2	0/1:1,28:31:29:0.966:2	0/1:0,62:31:62:1.00:2	0/1:0,64:32:64:1.00:2	0/1:25,13:30:38:0.342:2	0/1:59,28:31:87:0.322:2
chr1	86842012	rs187270155	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,109:32:184:0.592:2	./.	./.	./.	./.	./.	./.	./.
chr1	86847955	rs272516	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,20:32:59:0.339:2	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	./.	0/1:51,23:32:74:0.311:2	0/1:0,74:33:74:1.00:2	0/1:32,24:33:56:0.429:2	0/1:44,39:33:83:0.470:2
chr1	86852621	rs2390096	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,8:34:30:0.267:2	0/1:8,9:33:17:0.529:2	./.	0/1:34,16:32:50:0.320:2	0/1:19,8:33:27:0.296:2	0/1:25,16:30:41:0.390:2	0/1:0,18:33:18:1.00:2	0/1:16,29:32:45:0.644:2	./.	./.	./.
chr1	86891073	rs11580625	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,22:32:62:0.355:2	0/1:28,14:29:42:0.333:2	./.	./.	./.	./.	./.	./.
chr1	86900332	rs17449526	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,37:30:84:0.440:2	0/1:34,16:31:50:0.320:2	0/1:5,12:30:17:0.706:2	0/1:45,61:30:107:0.575:2	0/1:71,24:29:95:0.253:2	0/1:60,36:30:96:0.375:2	./.	./.	./.	0/1:43,47:29:90:0.522:2	0/1:56,46:30:102:0.451:2
chr1	86900372	rs17409304	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,35:34:87:0.402:2	0/1:36,18:33:54:0.333:2	0/1:8,8:33:16:0.500:2	0/1:55,44:33:99:0.444:2	0/1:71,33:33:104:0.317:2	0/1:59,49:33:108:0.454:2	./.	./.	./.	0/1:45,54:33:99:0.545:2	0/1:60,52:34:112:0.464:2
chr1	86904588	rs11161830	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:34:22:0.273:2	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.	0/1:2,24:32:26:0.923:2	./.
chr1	86909493	rs2390059	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:51,43:30:94:0.457:2	0/1:27,25:30:52:0.481:2	./.	./.	./.	./.	0/1:2,64:30:66:0.970:2	./.
chr1	86909582	rs1413426	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,38:31:102:0.373:2	0/1:56,41:31:97:0.423:2	./.	./.	./.	./.	0/1:2,79:31:81:0.975:2	./.
chr1	86909685	rs72720136	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:33:65:0.462:2	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	86913265	rs2275001	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,52:31:84:0.619:2	0/1:31,36:30:67:0.537:2	0/1:55,55:31:110:0.500:2	0/1:3,91:31:94:0.968:2	./.	./.	./.	./.
chr1	86920904	rs2390057	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:33:11:0.364:2	0/1:0,76:33:76:1.00:2	0/1:2,53:32:55:0.964:2	0/1:61,43:32:104:0.413:2	0/1:2,76:32:78:0.974:2	./.	./.	0/1:32,29:33:61:0.475:2	./.
chr1	86939130	rs2145412	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,25:32:54:0.463:2	0/1:25,24:32:49:0.490:2	0/1:9,3:31:12:0.250:2	0/1:2,84:31:86:0.977:2	0/1:0,76:31:76:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,71:31:72:0.986:2	0/1:0,62:32:62:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,101:32:101:1.00:2
chr1	86947975	rs1321694	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,138:30:140:0.986:2	0/1:4,80:30:84:0.952:2	0/1:93,58:29:151:0.384:2	0/1:68,72:29:140:0.514:2	./.	0/1:79,80:31:159:0.503:2	0/1:78,57:30:135:0.422:2	./.
chr1	86952324	rs2734705	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:1,41:32:42:0.976:2	0/1:0,12:33:12:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,124:32:124:1.00:2	0/1:1,113:33:115:0.991:2	0/1:0,86:32:86:1.00:2	0/1:0,91:32:91:1.00:2
chr1	86959173	rs2791494	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:29:82:1.00:2	0/1:0,40:30:40:1.00:2	0/1:3,5:30:8:0.625:2	0/1:0,118:30:118:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,132:30:132:1.00:2	0/1:98,78:29:176:0.443:2	0/1:0,112:30:112:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,104:29:104:1.00:2
chr1	86961210	rs5744408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,52:31:118:0.441:2	./.	./.	./.
chr1	86965419	rs1882753	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:30:30:0.533:2	0/1:21,19:31:40:0.475:2
chr1	87031488	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr1	87045902	rs1932809	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,38:32:39:0.974:2	./.	./.	./.	./.	./.	./.
chr1	87101375	rs2292830	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:79,67:34:146:0.459:2	0/1:68,46:33:114:0.404:2	0/1:0,21:33:21:1.00:2	./.	./.	0/1:125,54:33:179:0.302:2	./.	0/1:119,49:33:168:0.292:2	./.	0/1:100,62:34:162:0.383:2	./.
chr1	87101649	rs2292829	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:32:45:0.578:2	./.	./.	./.
chr1	87170644	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:29:43:0.093:2	./.	./.	./.	./.	./.
chr1	87458742	rs61771748	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.	./.	./.	0/1:47,49:34:96:0.510:2	./.	./.
chr1	89225976	rs430600	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,43:33:120:0.358:2	0/1:47,23:33:70:0.329:2	./.	0/1:0,93:33:93:1.00:2	0/1:2,57:31:59:0.966:2	0/1:69,41:32:110:0.373:2	0/1:2,71:33:73:0.973:2	0/1:0,107:32:107:1.00:2	0/1:70,47:33:117:0.402:2	0/1:0,78:33:78:1.00:2	./.
chr1	89237556	rs9651072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,26:32:72:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr1	89271574	rs786906	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,26:30:67:0.388:2	0/1:20,23:29:43:0.535:2	./.	./.	0/1:2,44:30:46:0.957:2	0/1:48,18:30:66:0.273:2	0/1:35,21:30:56:0.375:2	0/1:0,61:29:61:1.00:2	0/1:61,32:30:93:0.344:2	0/1:0,75:30:75:1.00:2	./.
chr1	89273266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:35:69:0.058:2	./.	./.
chr1	89298839	rs188265897	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:35:36:0.111:2	./.	./.
chr1	89322982	rs2794318	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,122:31:122:1.00:2
chr1	89426902	rs3738055	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:1,46:32:47:0.979:2	0/1:0,3:31:3:1.00:2	0/1:50,43:30:93:0.462:2	0/1:35,23:31:58:0.397:2	0/1:43,40:30:83:0.482:2	0/1:34,33:32:67:0.493:2	0/1:44,57:31:101:0.564:2	0/1:34,42:32:76:0.553:2	./.	0/1:41,40:32:81:0.494:2
chr1	89448520	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:31:185:0.027:2	./.
chr1	89448571	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:32:171:0.029:2	./.	./.	./.
chr1	89448608	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:34:158:0.032:2	./.	./.	./.	./.	./.
chr1	89448619	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,5:31:174:0.029:2	./.	./.	./.	0/1:142,5:31:147:0.034:2	./.	./.	./.
chr1	89448623	rs141468346	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:162,5:33:167:0.030:2	0/1:82,7:32:89:0.079:2	./.	0/1:167,14:34:181:0.077:2	./.	0/1:152,7:33:159:0.044:2	./.	0/1:135,11:31:146:0.075:2	0/1:150,5:34:157:0.032:2	./.	0/1:159,6:29:165:0.036:2
chr1	89448646	rs138129402	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:148,7:30:155:0.045:2	0/1:90,6:30:96:0.063:2	./.	0/1:162,10:31:172:0.058:2	./.	./.	./.	0/1:130,13:31:143:0.091:2	0/1:145,7:31:152:0.046:2	./.	./.
chr1	89448702	rs138519603	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,7:28:153:0.046:2	./.	./.	./.	./.	0/1:177,8:32:186:0.043:2
chr1	89448717	rs202218737	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:177,4:33:181:0.022:2	./.	./.	0/1:178,6:30:184:0.033:2	./.	./.	./.	0/1:174,9:28:183:0.049:2	0/1:181,5:31:186:0.027:2	./.	0/1:184,6:32:190:0.032:2
chr1	89448733	rs139696847	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	89448812	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,6:30:190:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	89448817	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:157,7:33:164:0.043:2	./.	0/1:184,10:28:194:0.052:2	./.	0/1:184,9:30:193:0.047:2	./.	0/1:180,7:31:187:0.037:2	./.	./.	0/1:181,7:29:188:0.037:2
chr1	89448841	rs150045246	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,8:28:179:0.045:2	./.	0/1:170,7:32:177:0.040:2	./.	0/1:175,10:33:185:0.054:2	0/1:175,5:32:180:0.028:2	./.	./.
chr1	89448896	rs200284841	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:31:175:0.034:2	0/1:154,6:32:160:0.038:2	./.	./.
chr1	89448913	rs200180389	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	0/1:177,7:30:184:0.038:2	./.	0/1:181,5:33:186:0.027:2	./.	0/1:154,9:33:163:0.055:2	./.	./.
chr1	89448963	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.
chr1	89449029	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:32:181:0.028:2
chr1	89449037	rs200081893	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,10:32:185:0.054:2	./.	./.	0/1:175,6:31:181:0.033:2
chr1	89449117	rs76228469	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,5:30:145:0.034:2	./.	./.	./.	0/1:95,9:27:104:0.087:2	./.	./.	0/1:150,6:30:156:0.038:2
chr1	89449168	rs59048247	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:30:65:0.415:2	./.	./.	./.	./.
chr1	89449237	rs200727134	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	0/1:182,4:33:187:0.022:2	./.	./.
chr1	89449278	rs201168911	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:170,6:29:176:0.034:2	0/1:92,10:30:102:0.098:2	./.	0/1:162,22:28:184:0.120:2	./.	0/1:156,14:30:170:0.082:2	./.	0/1:162,19:29:182:0.105:2	0/1:162,17:30:179:0.095:2	./.	0/1:161,24:29:185:0.130:2
chr1	89449298	rs111779380	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:161,11:31:172:0.064:2	0/1:82,16:33:99:0.163:2	./.	0/1:152,31:32:183:0.169:2	./.	0/1:132,22:32:154:0.143:2	./.	0/1:149,29:32:178:0.163:2	0/1:142,25:33:167:0.150:2	./.	0/1:158,37:33:195:0.190:2
chr1	89449383	rs147771633	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,3:31:23:0.130:2	0/1:147,11:32:158:0.070:2	./.	0/1:140,21:31:161:0.130:2	./.	./.	./.	./.	0/1:137,13:33:152:0.087:2
chr1	89449390	rs112636230	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,33:33:180:0.183:2	0/1:113,32:33:145:0.221:2	0/1:21,5:30:26:0.192:2	0/1:106,51:33:157:0.325:2	./.	0/1:141,20:31:161:0.124:2	./.	0/1:102,78:32:180:0.433:2	0/1:101,54:33:155:0.348:2	./.	0/1:112,41:34:153:0.268:2
chr1	89449399	rs77567101	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,29:32:174:0.167:2	0/1:117,29:32:148:0.199:2	0/1:23,5:30:28:0.179:2	0/1:106,42:31:149:0.284:2	./.	0/1:140,19:28:160:0.119:2	./.	0/1:107,72:31:180:0.402:2	0/1:101,51:33:153:0.336:2	./.	0/1:103,35:32:139:0.254:2
chr1	89449434	rs2893084	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,28:33:173:0.162:2	0/1:147,35:33:184:0.192:2	0/1:20,5:33:25:0.200:2	0/1:109,53:34:162:0.327:2	./.	0/1:138,24:32:162:0.148:2	./.	0/1:114,71:32:185:0.384:2	0/1:103,49:34:152:0.322:2	./.	0/1:116,48:32:164:0.293:2
chr1	89449483	rs74100106	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:149,14:31:163:0.086:2	0/1:139,23:30:162:0.142:2	./.	0/1:142,40:30:182:0.220:2	./.	0/1:135,20:30:155:0.129:2	./.	0/1:145,40:30:185:0.216:2	0/1:126,48:30:175:0.276:2	./.	0/1:126,44:30:170:0.259:2
chr1	89474818	rs17433780	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,77:31:147:0.524:2	0/1:39,52:30:91:0.571:2	0/1:4,6:31:10:0.600:2	./.	0/1:42,56:30:98:0.571:2	0/1:47,63:31:110:0.573:2	./.	./.	0/1:46,67:31:113:0.593:2	0/1:44,68:31:112:0.607:2	0/1:76,45:30:121:0.372:2
chr1	89475135	rs10493821	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:77,95:32:172:0.552:2	0/1:47,55:31:102:0.539:2	0/1:18,16:30:34:0.471:2	./.	0/1:57,70:30:127:0.551:2	0/1:87,90:30:177:0.508:2	./.	./.	0/1:92,73:32:165:0.442:2	0/1:87,79:32:166:0.476:2	0/1:93,82:31:176:0.469:2
chr1	89478868	rs113490655	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	0/1:48,53:32:101:0.525:2	0/1:42,35:31:77:0.455:2	./.	0/1:70,51:33:121:0.421:2	./.	./.
chr1	89479063	rs4656077	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,7:32:28:0.250:2	./.	0/1:13,16:33:29:0.552:2	0/1:14,16:33:30:0.533:2	0/1:18,5:33:23:0.217:2	0/1:13,23:33:36:0.639:2	0/1:25,9:33:34:0.265:2	./.
chr1	89479074	rs4656078	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,6:32:24:0.250:2	./.	0/1:12,9:29:21:0.429:2	0/1:13,12:32:25:0.480:2	0/1:14,4:31:18:0.222:2	0/1:13,17:33:30:0.567:2	0/1:20,9:32:29:0.310:2	./.
chr1	89479758	rs3795543	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,65:32:138:0.471:2	0/1:30,41:32:71:0.577:2	0/1:0,13:33:13:1.00:2	0/1:83,68:33:151:0.450:2	0/1:58,49:31:107:0.458:2	0/1:1,130:32:131:0.992:2	0/1:65,45:32:110:0.409:2	0/1:92,68:32:160:0.425:2	0/1:0,155:33:155:1.00:2	0/1:1,110:32:111:0.991:2	0/1:81,83:33:164:0.506:2
chr1	89479866	rs144891343	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:34:166:0.024:2	./.	./.
chr1	89479940	rs371490793	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:31:160:0.031:2
chr1	89481032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.
chr1	89481060	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:31:145:0.034:2	./.	./.	./.
chr1	89481072	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:32:131:0.038:2	./.	./.	./.
chr1	89481087	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:32:103:0.049:2	./.	./.	./.
chr1	89521829	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,7:32:190:0.037:2	./.	0/1:161,7:30:168:0.042:2	./.	0/1:182,11:29:193:0.057:2	./.	./.	./.
chr1	89521841	rs1048443	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	0/1:100,66:32:166:0.398:2	./.	./.	0/1:93,101:33:194:0.521:2	0/1:101,51:31:152:0.336:2	0/1:104,73:32:180:0.412:2
chr1	89521851	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:163,4:32:168:0.024:2	./.	./.	0/1:182,7:31:189:0.037:2	./.	0/1:167,7:31:175:0.040:2	./.	0/1:183,10:31:193:0.052:2	./.	./.	./.
chr1	89522646	rs1048425	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,62:33:135:0.459:2	0/1:40,37:32:77:0.481:2	0/1:0,21:32:21:1.00:2	0/1:85,61:32:146:0.418:2	0/1:63,75:32:138:0.543:2	0/1:3,142:31:145:0.979:2	0/1:121,77:32:198:0.389:2	0/1:92,73:32:165:0.442:2	0/1:2,159:33:161:0.988:2	0/1:3,132:32:135:0.978:2	0/1:69,83:32:155:0.546:2
chr1	89523756	rs148526074	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,43:32:108:0.398:2	./.	./.	./.	./.	./.	./.	./.
chr1	89525903	rs143075008	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,10:32:114:0.088:2	./.	./.	./.	./.
chr1	89525943	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:31:112:0.045:2	./.	./.	./.	./.
chr1	89579924	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,6:28:149:0.040:2	./.	./.	./.	./.
chr1	89579927	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,6:33:137:0.044:2	./.	./.	./.	./.
chr1	89579941	rs2230338	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,117:29:120:0.975:2	0/1:2,70:28:72:0.972:2	0/1:13,9:28:22:0.409:2	0/1:5,146:28:151:0.967:2	0/1:73,60:28:133:0.451:2	0/1:90,68:29:158:0.430:2	0/1:11,107:28:118:0.907:2	0/1:3,127:28:130:0.977:2	0/1:103,54:30:157:0.344:2	0/1:63,67:29:131:0.515:2	0/1:73,65:28:138:0.471:2
chr1	89582690	rs1803632	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:1,58:32:59:0.983:2	0/1:7,6:32:13:0.462:2	0/1:0,93:33:93:1.00:2	0/1:35,42:32:77:0.545:2	0/1:55,57:32:112:0.509:2	0/1:0,100:32:100:1.00:2	0/1:1,118:32:120:0.992:2	0/1:58,58:33:116:0.500:2	0/1:47,61:32:108:0.565:2	0/1:70,54:32:124:0.435:2
chr1	89585906	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr1	89599037	rs72728707	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:166,19:30:185:0.103:2	0/1:177,14:33:191:0.073:2	0/1:39,7:32:46:0.152:2	./.	0/1:172,18:32:190:0.095:2	0/1:168,20:32:189:0.106:2	0/1:173,15:32:188:0.080:2	0/1:162,24:31:186:0.129:2	0/1:169,18:33:187:0.096:2	0/1:165,17:33:182:0.093:2	./.
chr1	89599070	rs151091316	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:177,12:33:189:0.063:2	0/1:179,9:32:188:0.048:2	0/1:39,3:34:42:0.071:2	./.	0/1:175,13:32:188:0.069:2	0/1:178,10:32:188:0.053:2	0/1:182,10:32:192:0.052:2	0/1:177,14:33:191:0.073:2	0/1:176,10:33:186:0.054:2	0/1:178,9:33:188:0.048:2	./.
chr1	89599084	rs79037912	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:159,6:32:166:0.036:2	./.	./.	./.	0/1:162,7:31:169:0.041:2	0/1:189,5:33:194:0.026:2	./.	./.	./.	./.	./.
chr1	89607289	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	0/1:110,4:34:114:0.035:2	./.	./.	./.	./.
chr1	89637578	rs676913	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,55:31:55:1.00:2	0/1:9,7:31:16:0.438:2	0/1:2,79:31:82:0.975:2	0/1:32,36:31:68:0.529:2	0/1:42,46:30:88:0.523:2	0/1:0,81:31:81:1.00:2	0/1:1,64:31:65:0.985:2	0/1:49,37:32:86:0.430:2	0/1:30,41:32:71:0.577:2	0/1:56,40:32:96:0.417:2
chr1	89652071	rs561042	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:123,15:32:139:0.109:2	0/1:101,9:30:110:0.082:2	./.	./.	0/1:135,16:31:151:0.106:2	0/1:122,27:32:149:0.181:2	0/1:133,13:33:146:0.089:2	0/1:129,18:33:147:0.122:2	0/1:138,10:33:148:0.068:2	0/1:122,15:32:137:0.109:2	./.
chr1	89652072	rs561037	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:122,15:31:137:0.109:2	0/1:102,9:32:111:0.081:2	./.	./.	0/1:136,16:30:152:0.105:2	0/1:121,27:31:149:0.182:2	0/1:131,13:33:144:0.090:2	0/1:128,18:31:146:0.123:2	0/1:140,10:33:150:0.067:2	0/1:122,15:32:137:0.109:2	./.
chr1	89652078	rs608339	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:121,12:31:133:0.090:2	0/1:101,9:29:110:0.082:2	./.	./.	0/1:130,14:30:144:0.097:2	0/1:117,20:30:137:0.146:2	0/1:137,8:31:146:0.055:2	0/1:131,9:32:141:0.064:2	0/1:143,6:32:150:0.040:2	0/1:125,13:32:138:0.094:2	./.
chr1	89652102	rs655260	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:126,11:31:137:0.080:2	./.	./.	./.	0/1:120,6:30:126:0.048:2	0/1:122,12:32:134:0.090:2	0/1:124,7:30:131:0.053:2	0/1:135,15:31:151:0.100:2	0/1:134,8:32:142:0.056:2	0/1:127,7:32:134:0.052:2	./.
chr1	89652204	rs188809753	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,49:29:88:0.557:2	./.	./.	./.	./.	./.	./.	./.
chr1	89656974	rs61738489	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,40:32:109:0.367:2	0/1:95,89:32:184:0.484:2
chr1	89732237	rs61729628	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,22:32:38:0.579:2	0/1:34,33:32:67:0.493:2	0/1:18,21:33:39:0.538:2	./.	0/1:40,35:33:75:0.467:2	./.	./.
chr1	89843717	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,6:33:80:0.075:2	./.	./.	./.
chr1	89843737	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,6:31:66:0.091:2	./.	./.	./.
chr1	89844035	rs35837853	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:33:37:0.622:2	./.	./.	./.	./.
chr1	89846152	rs4582772	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,12:31:36:0.343:2	0/1:7,11:32:18:0.611:2	./.	./.	0/1:25,15:32:40:0.375:2	0/1:18,14:30:32:0.438:2	./.	./.	0/1:24,27:33:51:0.529:2	./.	0/1:34,32:32:66:0.485:2
chr1	89847267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.
chr1	89847372	rs4658359	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,50:32:50:1.00:2	0/1:1,2:31:3:0.667:2	0/1:34,42:31:76:0.553:2	0/1:0,66:31:67:1.00:2	0/1:0,95:31:95:1.00:2	0/1:43,28:32:71:0.394:2	0/1:49,44:31:93:0.473:2	0/1:1,87:31:88:0.989:2	0/1:0,74:32:74:1.00:2	0/1:1,83:31:84:0.988:2
chr1	89847411	rs4658360	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,49:31:49:1.00:2	0/1:2,4:31:6:0.667:2	0/1:34,43:31:77:0.558:2	0/1:1,80:29:82:0.988:2	0/1:0,96:30:97:1.00:2	0/1:35,22:31:57:0.386:2	0/1:51,37:31:89:0.420:2	0/1:0,78:31:79:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,80:30:80:1.00:2
chr1	89847444	rs4658146	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,41:29:41:1.00:2	0/1:2,5:29:7:0.714:2	0/1:45,33:30:78:0.423:2	0/1:0,77:29:77:1.00:2	0/1:0,104:29:104:1.00:2	0/1:28,23:30:51:0.451:2	0/1:52,36:29:88:0.409:2	0/1:0,72:30:73:1.00:2	0/1:0,81:29:82:1.00:2	0/1:2,89:29:91:0.978:2
chr1	89849268	rs41288387	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,79:32:175:0.457:2	./.	./.	./.	./.
chr1	89849742	rs959460	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,103:31:104:0.990:2	0/1:1,60:32:61:0.984:2	0/1:0,13:30:13:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,143:30:144:1.00:2	0/1:0,114:30:114:1.00:2	0/1:80,76:31:156:0.487:2	0/1:0,142:31:142:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,130:31:130:1.00:2
chr1	90048248	rs12130207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,107:32:192:0.557:2	./.	./.	./.
chr1	90048976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr1	90049040	rs36084789	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:30:11:0.545:2	0/1:63,35:30:98:0.357:2	0/1:43,20:30:63:0.317:2	./.	./.	./.	./.	./.	./.
chr1	90178743	rs474536	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,68:31:69:1.00:2	0/1:1,107:32:108:0.991:2
chr1	90179532	rs12032393	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:32:18:0.667:2	0/1:5,11:31:16:0.688:2	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.
chr1	90473298	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.
chr1	90484253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.
chr1	90486412	rs2816881	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,168:33:170:0.988:2	0/1:0,91:32:91:1.00:2	0/1:13,7:32:20:0.350:2	0/1:64,94:33:158:0.595:2	0/1:0,176:32:176:1.00:2	0/1:0,131:31:131:1.00:2	0/1:74,89:32:163:0.546:2	0/1:89,72:33:161:0.447:2	0/1:98,70:34:168:0.417:2	0/1:96,83:33:179:0.464:2	0/1:75,65:32:141:0.464:2
chr1	90493026	rs10922744	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,81:32:84:0.964:2	0/1:0,59:33:59:1.00:2	0/1:6,4:32:10:0.400:2	0/1:59,43:32:102:0.422:2	0/1:0,77:32:77:1.00:2	0/1:0,78:31:78:1.00:2	0/1:52,36:32:88:0.409:2	0/1:43,52:32:95:0.547:2	0/1:64,57:33:121:0.471:2	0/1:46,36:32:82:0.439:2	0/1:38,53:32:91:0.582:2
chr1	91178081	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.
chr1	91182180	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2
chr1	91728053	rs585898	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:33:103:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,155:34:155:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,147:33:147:1.00:2
chr1	91781413	rs281992	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:30:21:0.619:2	0/1:2,140:30:142:0.986:2	0/1:59,81:29:140:0.579:2	0/1:2,194:29:196:0.990:2	0/1:0,107:30:107:1.00:2	0/1:86,107:30:193:0.554:2	0/1:1,185:31:186:0.995:2	0/1:0,133:30:133:1.00:2	0/1:93,93:30:186:0.500:2
chr1	91782031	rs11584478	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,64:31:65:0.985:2	0/1:0,23:32:23:1.00:2	0/1:4,3:33:7:0.429:2	./.	0/1:27,27:32:54:0.500:2	./.	./.	0/1:24,43:32:67:0.642:2	./.	./.	0/1:49,49:32:98:0.500:2
chr1	91784887	rs10493845	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,115:33:115:1.00:2	0/1:0,53:33:53:1.00:2	0/1:13,5:33:18:0.278:2	./.	0/1:67,48:33:115:0.417:2	./.	./.	0/1:60,58:33:118:0.492:2	./.	./.	0/1:88,74:33:162:0.457:2
chr1	91851193	rs12144808	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:32:21:0.571:2	./.	./.	./.	./.	./.	./.	0/1:64,49:32:113:0.434:2	./.
chr1	91851253	rs282026	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:33:95:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,124:33:124:1.00:2	0/1:0,127:34:127:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,131:33:131:1.00:2
chr1	91859795	rs282009	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,185:33:185:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,183:32:183:1.00:2	0/1:1,168:32:169:0.994:2	0/1:0,170:32:170:1.00:2	0/1:0,183:34:183:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,182:33:182:1.00:2
chr1	91859801	rs11165778	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,175:32:178:0.989:2	0/1:3,102:32:105:0.971:2	0/1:16,10:31:26:0.385:2	./.	0/1:80,58:32:139:0.420:2	./.	./.	0/1:92,80:32:172:0.465:2	./.	./.	0/1:105,78:32:183:0.426:2
chr1	91973441	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	91980447	rs483532	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,137:30:137:1.00:2	0/1:3,87:29:90:0.967:2	./.	0/1:86,82:30:168:0.488:2	0/1:53,38:29:91:0.418:2	0/1:63,92:30:155:0.594:2	0/1:0,120:29:120:1.00:2	0/1:0,173:30:173:1.00:2	0/1:0,181:31:182:1.00:2	0/1:0,152:30:152:1.00:2	0/1:0,172:30:172:1.00:2
chr1	92174260	rs284878	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,12:31:12:1.00:2	0/1:1,167:33:168:0.994:2	0/1:0,165:32:165:1.00:2	0/1:0,151:33:151:1.00:2	0/1:0,191:33:191:1.00:2	0/1:1,187:32:189:0.995:2	0/1:0,173:33:174:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,139:33:139:1.00:2
chr1	92177938	rs1805113	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,56:32:126:0.444:2	0/1:57,36:32:93:0.387:2	0/1:7,6:32:13:0.462:2	0/1:2,134:32:136:0.985:2	0/1:66,64:31:130:0.492:2	0/1:0,125:32:125:1.00:2	0/1:60,64:32:125:0.516:2	0/1:1,134:32:135:0.993:2	./.	0/1:64,38:32:102:0.373:2	0/1:2,137:33:139:0.986:2
chr1	92185657	rs1805112	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,19:31:42:0.463:2	0/1:10,13:32:23:0.565:2	./.	./.	0/1:0,20:31:20:1.00:2	0/1:3,23:30:26:0.885:2	0/1:16,8:29:24:0.333:2	0/1:1,28:30:29:0.966:2	0/1:14,14:32:28:0.500:2	0/1:15,8:32:23:0.348:2	0/1:0,32:31:33:1.00:2
chr1	92185735	rs11466595	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	92195379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr1	92262874	rs2810904	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,93:30:93:1.00:2	0/1:2,8:29:10:0.800:2	0/1:65,54:32:120:0.454:2	0/1:85,56:30:141:0.397:2	0/1:96,54:31:150:0.360:2	0/1:3,166:31:169:0.982:2	0/1:99,76:31:175:0.434:2	0/1:78,83:32:161:0.516:2	0/1:0,99:31:99:1.00:2	0/1:3,130:31:133:0.977:2
chr1	92327045	rs1805110	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,60:32:137:0.438:2	0/1:36,27:32:63:0.429:2	./.	./.	./.	./.	./.	./.	0/1:107,91:32:198:0.460:2	./.	0/1:96,83:32:179:0.464:2
chr1	92428495	rs10783071	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,61:31:61:1.00:2	0/1:28,27:32:55:0.491:2	0/1:47,35:31:82:0.427:2	0/1:0,79:32:79:1.00:2	0/1:14,23:31:37:0.622:2	0/1:0,96:32:96:1.00:2
chr1	92442695	rs1156281	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,12:32:44:0.273:2	0/1:40,28:32:68:0.412:2	./.	0/1:27,21:33:48:0.438:2	./.
chr1	92445257	rs3088232	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:32:57:0.368:2	./.	0/1:65,60:33:125:0.480:2	./.	0/1:57,56:32:113:0.496:2
chr1	92457843	rs10747493	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,99:32:99:1.00:2	0/1:34,19:31:53:0.358:2	0/1:45,21:30:66:0.318:2	0/1:30,15:32:45:0.333:2	./.	0/1:0,78:34:78:1.00:2	0/1:29,41:33:70:0.586:2	0/1:0,106:33:106:1.00:2
chr1	92479778	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:31:188:0.037:2	./.	./.	./.
chr1	92511171	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.
chr1	92568084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.
chr1	92568089	rs17131602	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,65:33:134:0.485:2
chr1	92632555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	./.
chr1	92632683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:31:178:0.022:2	./.	./.	./.	./.	./.
chr1	92646021	rs1483022	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,18:32:50:0.360:2	0/1:30,14:32:44:0.318:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,39:31:39:1.00:2	0/1:0,36:30:36:1.00:2	0/1:14,21:32:35:0.600:2	0/1:1,36:31:37:0.973:2	0/1:39,30:33:69:0.435:2	0/1:0,60:31:60:1.00:2	0/1:45,33:31:78:0.423:2
chr1	92647145	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.
chr1	92647223	rs560389	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,50:33:50:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:1,38:31:39:0.974:2	0/1:0,33:32:33:1.00:2	0/1:16,20:32:36:0.556:2	0/1:0,44:32:44:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,22:31:22:1.00:2	0/1:34,24:33:58:0.414:2
chr1	92647532	rs565156	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,50:32:50:1.00:2
chr1	92647861	rs566576	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.
chr1	92735273	rs61758979	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,58:32:150:0.387:2	./.
chr1	92811455	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,50:33:85:0.588:2
chr1	92946037	rs114487177	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:31:21:0.190:2	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	92946479	rs11164605	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,10:29:10:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,7:32:7:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,3:30:3:1.00:2
chr1	92948551	rs143913803	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	92948938	rs34631763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,13:27:21:0.619:2	0/1:8,6:30:14:0.429:2	./.	0/1:6,15:30:21:0.714:2	./.	./.	./.	./.	0/1:10,4:30:14:0.286:2	./.	./.
chr1	92979354	rs6603979	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,8:33:8:1.00:2	0/1:1,76:33:77:0.987:2	0/1:37,19:32:56:0.339:2	./.	0/1:0,34:32:34:1.00:2	0/1:38,29:32:67:0.433:2	0/1:0,39:32:39:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,81:32:81:1.00:2
chr1	92979432	rs41286809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,17:29:55:0.309:2
chr1	93073228	rs11808092	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,71:33:115:0.617:2	0/1:33,30:32:63:0.476:2	./.	0/1:2,145:32:147:0.986:2	0/1:50,57:32:107:0.533:2	0/1:0,145:31:145:1.00:2	0/1:64,48:31:112:0.429:2	0/1:68,78:32:146:0.534:2	0/1:89,50:33:139:0.360:2	./.	./.
chr1	93089823	rs7514716	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,150:33:150:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,133:33:133:1.00:2	0/1:0,146:33:146:1.00:2	0/1:0,149:34:149:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,150:33:150:1.00:2
chr1	93160902	rs2391199	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,110:32:112:0.982:2	0/1:3,77:32:80:0.963:2	0/1:0,24:32:24:1.00:2	0/1:2,118:32:120:0.983:2	0/1:0,107:32:107:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,173:33:173:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,136:33:136:1.00:2
chr1	93297630	rs145634330	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:31:54:0.444:2	./.
chr1	93297677	rs200628272	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:32:93:0.452:2
chr1	93297696	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	93300404	rs113792800	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:27:16:0.500:2	./.	./.	./.
chr1	93303071	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:33:80:0.438:2	./.	./.
chr1	93307359	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:30:111:0.036:2	./.
chr1	93580581	rs2815427	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:33:95:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,118:32:118:1.00:2
chr1	93584885	rs75449515	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,10:16:44:0.227:2
chr1	93584930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2
chr1	93620393	rs1060622	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,46:32:97:0.474:2	0/1:21,18:32:39:0.462:2	./.	0/1:2,93:31:95:0.979:2	0/1:62,38:31:100:0.380:2	0/1:3,121:31:124:0.976:2	0/1:0,94:31:94:1.00:2	./.	./.	0/1:0,104:32:104:1.00:2	./.
chr1	93621571	rs142621868	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:33:45:0.400:2	./.	./.
chr1	93646207	rs2297707	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.
chr1	93646361	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.
chr1	93646418	rs10874763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,23:31:25:0.920:2	0/1:17,8:29:25:0.320:2	0/1:0,16:30:16:1.00:2	./.	./.	./.	0/1:8,4:29:12:0.333:2	./.
chr1	93646433	rs2255722	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:33:19:0.579:2	0/1:6,11:33:17:0.647:2	./.	./.
chr1	93672688	rs2783499	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	0/1:19,21:31:40:0.525:2	0/1:43,37:33:80:0.463:2	./.	0/1:49,36:32:86:0.424:2
chr1	93672723	rs2815413	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,53:32:99:0.535:2	0/1:33,31:31:64:0.484:2	0/1:0,19:29:19:1.00:2	0/1:1,116:32:117:0.991:2	0/1:57,25:32:82:0.305:2	0/1:4,114:32:118:0.966:2	0/1:1,75:32:76:0.987:2	0/1:63,60:32:123:0.488:2	0/1:99,65:33:164:0.396:2	0/1:2,87:32:89:0.978:2	0/1:90,71:32:161:0.441:2
chr1	93698072	rs77458693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:31:27:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	93704952	rs41292127	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	93720070	rs12030843	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	0/1:28,34:32:62:0.548:2	0/1:64,51:33:115:0.443:2	./.	0/1:55,59:32:114:0.518:2
chr1	93720153	rs61729705	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,38:29:76:0.500:2	./.	./.	./.	./.	./.	./.
chr1	93735934	rs41292129	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:32:83:0.458:2	0/1:26,25:32:51:0.490:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,53:32:86:0.616:2	./.
chr1	93736292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2
chr1	93744055	rs10874767	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,17:32:50:0.340:2	0/1:21,4:32:25:0.160:2	./.	./.	./.	./.	./.	0/1:23,12:31:35:0.343:2	0/1:30,15:31:45:0.333:2	./.	0/1:33,15:33:48:0.313:2
chr1	93826178	rs3088371	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,88:32:181:0.486:2
chr1	93995254	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.
chr1	94017964	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.
chr1	94048026	rs116760841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,54:29:111:0.491:2
chr1	94048485	rs12760294	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.
chr1	94336300	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr1	94341267	rs2273165	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:31:12:0.333:2	0/1:24,29:33:53:0.547:2	./.	0/1:1,56:32:57:0.982:2	0/1:0,33:33:33:1.00:2	0/1:0,48:33:48:1.00:2	./.	0/1:23,19:33:42:0.452:2	./.
chr1	94342061	rs41292661	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,74:31:149:0.497:2	./.	0/1:68,68:30:136:0.500:2	./.	./.	./.	./.	./.
chr1	94342207	rs180694931	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,94:33:190:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr1	94342564	rs3747965	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:24,16:32:40:0.400:2	./.	0/1:0,37:30:37:1.00:2	0/1:20,23:32:43:0.535:2	0/1:21,27:33:48:0.563:2	./.	0/1:18,10:33:28:0.357:2	./.
chr1	94343023	rs2391322	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,23:32:50:0.460:2	./.	0/1:1,54:32:55:0.982:2	0/1:16,23:32:39:0.590:2	0/1:28,43:33:71:0.606:2	./.	0/1:30,22:32:53:0.423:2	./.
chr1	94343233	rs3789457	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,59:32:121:0.488:2	0/1:30,41:33:71:0.577:2	0/1:0,12:32:12:1.00:2	0/1:43,63:32:106:0.594:2	0/1:40,32:30:72:0.444:2	0/1:1,108:32:109:0.991:2	0/1:0,61:32:61:1.00:2	0/1:2,130:32:133:0.985:2	0/1:73,68:33:141:0.482:2	0/1:50,53:33:103:0.515:2	0/1:0,99:32:99:1.00:2
chr1	94344716	rs2235971	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:29:9:0.333:2	0/1:43,29:32:72:0.403:2	./.	0/1:1,92:31:93:0.989:2	0/1:55,50:32:105:0.476:2	0/1:55,41:30:96:0.427:2	./.	0/1:36,29:31:65:0.446:2	./.
chr1	94461717	rs6666652	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:32:32:0.344:2	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	94461754	rs1800717	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	94466659	rs1801555	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,17:30:37:0.459:2	0/1:8,9:30:17:0.529:2	./.	./.	0/1:17,24:30:41:0.585:2	0/1:19,22:28:41:0.537:2	./.	./.	./.	./.	./.
chr1	94467447	rs1801359	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,24:30:51:0.471:2	0/1:14,15:32:29:0.517:2	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	94471075	rs1762114	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,23:30:40:0.575:2	0/1:11,23:30:34:0.676:2	./.	0/1:0,39:30:39:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,53:30:53:1.00:2	0/1:2,49:31:51:0.961:2	0/1:0,61:31:62:1.00:2	0/1:2,79:30:81:0.975:2
chr1	94473845	rs2275029	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,19:30:40:0.475:2	0/1:28,8:29:36:0.222:2	./.	0/1:31,11:31:42:0.262:2	0/1:41,14:28:55:0.255:2	./.	./.	./.	./.	./.	0/1:0,37:29:37:1.00:2
chr1	94473846	rs56142141	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,11:32:42:0.262:2	./.	./.	./.	./.	./.	./.	0/1:28,10:31:38:0.263:2
chr1	94473864	rs1800739	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,17:32:35:0.486:2	0/1:24,7:32:31:0.226:2	./.	0/1:26,7:31:33:0.212:2	0/1:31,8:31:39:0.205:2	./.	./.	./.	./.	./.	0/1:0,32:32:32:1.00:2
chr1	94474328	rs4147857	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,43:33:106:0.406:2	0/1:55,15:33:70:0.214:2	./.	0/1:80,66:33:146:0.452:2	0/1:69,40:33:109:0.367:2	./.	./.	./.	./.	./.	0/1:1,138:33:139:0.993:2
chr1	94476388	rs1801574	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,30:33:68:0.441:2	0/1:20,8:32:28:0.286:2	./.	0/1:52,48:33:100:0.480:2	0/1:73,62:32:135:0.459:2	./.	./.	./.	0/1:48,29:33:77:0.377:2	./.	0/1:2,55:32:57:0.965:2
chr1	94476467	rs1801466	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,30:32:82:0.366:2	./.	./.
chr1	94485208	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.
chr1	94544233	rs4147831	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:33:17:0.471:2	./.	./.	./.	./.	0/1:72,60:32:132:0.455:2	./.	./.	./.
chr1	94544234	rs3112831	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,26:30:80:0.325:2	0/1:27,18:30:45:0.400:2	./.	0/1:53,53:29:106:0.500:2	0/1:54,36:30:90:0.400:2	./.	./.	./.	0/1:68,44:30:112:0.393:2	0/1:50,39:31:89:0.438:2	./.
chr1	94546079	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.	./.
chr1	94564483	rs6657239	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,24:30:54:0.444:2	./.	./.	./.	./.	./.	./.
chr1	94578548	rs4847281	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:30:118:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,16:29:16:1.00:2	0/1:1,135:30:136:0.993:2	0/1:0,114:30:114:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,117:30:117:1.00:2	0/1:1,180:30:181:0.994:2	0/1:0,134:31:134:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,151:30:151:1.00:2
chr1	94639447	rs1999272	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,82:31:82:1.00:2
chr1	94639475	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:108:0.037:2	./.
chr1	94643531	rs1048854	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,27:33:63:0.429:2	./.	0/1:28,33:33:61:0.541:2	0/1:24,37:33:61:0.607:2	./.	0/1:27,33:34:60:0.550:2	./.	./.
chr1	94930345	rs16946	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,41:33:84:0.488:2	0/1:23,9:32:32:0.281:2	./.	0/1:2,47:31:49:0.959:2	0/1:38,21:32:59:0.356:2	./.	0/1:45,24:33:69:0.348:2	0/1:22,31:32:53:0.585:2	0/1:33,26:33:59:0.441:2	0/1:0,59:32:59:1.00:2	0/1:65,40:32:105:0.381:2
chr1	94982641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,5:31:84:0.060:2	./.	./.
chr1	94996062	rs3789683	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:30:71:0.451:2	./.	./.	./.	./.
chr1	94996139	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	./.	./.
chr1	95001600	rs698946	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,9:30:9:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,75:29:75:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,70:30:70:1.00:2
chr1	95294089	rs2640065	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,42:32:79:0.532:2	0/1:34,21:32:55:0.382:2	./.	./.	0/1:26,26:30:52:0.500:2	0/1:63,53:32:116:0.457:2	0/1:28,34:31:62:0.548:2	0/1:53,43:32:96:0.448:2	0/1:43,50:33:93:0.538:2	0/1:48,45:32:93:0.484:2	./.
chr1	95307680	rs144117916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:32:52:0.346:2	./.	./.	./.	./.
chr1	95330372	rs859098	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,49:33:92:0.533:2	0/1:37,24:32:61:0.393:2	0/1:0,10:32:10:1.00:2	0/1:72,44:32:117:0.379:2	0/1:0,74:32:74:1.00:2	0/1:1,123:31:124:0.992:2	0/1:63,38:32:101:0.376:2	0/1:6,118:32:124:0.952:2	0/1:0,116:33:116:1.00:2	0/1:1,114:32:115:0.991:2	0/1:86,77:33:164:0.472:2
chr1	95367773	rs2228344	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:32:44:0.523:2	0/1:16,14:30:30:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	95709821	rs259358	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:30:122:1.00:2	0/1:0,63:31:63:1.00:2	0/1:1,18:32:19:0.947:2	0/1:0,148:31:148:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,142:31:144:1.00:2	0/1:2,115:31:117:0.983:2	0/1:2,143:30:145:0.986:2	0/1:0,186:31:186:1.00:2	0/1:0,110:31:110:1.00:2	0/1:3,141:31:145:0.979:2
chr1	95709939	rs2296308	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,80:32:168:0.476:2	0/1:56,49:32:105:0.467:2	0/1:1,25:32:26:0.962:2	0/1:2,134:32:136:0.985:2	0/1:68,63:32:131:0.481:2	0/1:2,143:32:145:0.986:2	0/1:61,59:32:120:0.492:2	0/1:2,143:32:145:0.986:2	0/1:0,160:33:161:1.00:2	0/1:0,152:32:152:1.00:2	./.
chr1	97189091	rs3762411	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:33:57:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,5:32:5:1.00:2	0/1:35,32:33:67:0.478:2	0/1:0,38:32:38:1.00:2	0/1:1,59:32:60:0.983:2	0/1:29,16:32:45:0.356:2	./.	0/1:0,71:33:71:1.00:2	0/1:42,19:32:61:0.311:2	0/1:51,45:32:96:0.469:2
chr1	97272456	rs6699932	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,34:33:70:0.486:2	0/1:22,19:32:41:0.463:2	./.	0/1:28,19:32:47:0.404:2	./.	0/1:0,71:33:71:1.00:2	./.	./.
chr1	97770920	rs1801160	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,29:32:79:0.367:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	97981395	rs1801159	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,32:32:65:0.492:2	0/1:21,22:32:43:0.512:2	./.	./.	./.	./.	0/1:27,40:31:67:0.597:2	./.	./.	./.	./.
chr1	97981421	rs1801158	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,82:31:82:1.00:2	./.	./.	./.	0/1:51,36:31:87:0.414:2	./.	0/1:29,29:32:58:0.500:2	./.
chr1	98165091	rs2297595	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	0/1:41,24:33:65:0.369:2	0/1:21,18:33:39:0.462:2	0/1:45,35:33:80:0.438:2
chr1	98348885	rs1801265	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,81:32:158:0.516:2	0/1:61,56:31:117:0.479:2	0/1:13,5:31:18:0.278:2	0/1:2,127:32:129:0.984:2	0/1:0,84:31:84:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,125:32:125:1.00:2	0/1:65,79:33:144:0.549:2	0/1:1,120:32:121:0.992:2	0/1:80,52:32:133:0.394:2
chr1	98511633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:30:111:0.036:2	./.	./.	./.	./.	./.
chr1	99127392	rs9728148	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,25:32:26:0.962:2	0/1:0,10:31:10:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,40:31:40:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,42:31:42:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,15:31:15:1.00:2
chr1	99164434	rs6577322	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,59:31:140:0.421:2	./.	./.	./.	0/1:1,150:31:151:0.993:2	./.	./.	./.
chr1	99167369	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.	./.
chr1	99167428	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,8:32:69:0.116:2	./.	./.	0/1:88,5:34:93:0.054:2	./.	./.
chr1	99167452	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	0/1:79,5:29:84:0.060:2	./.	./.
chr1	99225627	rs2019213	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,115:31:115:1.00:2	0/1:1,83:31:84:0.988:2	0/1:0,119:31:119:1.00:2	0/1:2,124:32:126:0.984:2	0/1:0,161:31:161:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,77:32:78:1.00:2	0/1:0,120:31:120:1.00:2
chr1	99418647	rs309087	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,20:31:47:0.426:2	0/1:2,80:31:82:0.976:2	./.	./.	./.	./.	./.
chr1	99470117	rs144194271	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,62:33:176:0.352:2	./.	./.	./.	./.	./.	./.	./.
chr1	99753658	rs148143169	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:29:182:0.473:2	./.	./.	./.	./.
chr1	100154554	rs35183456	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	./.
chr1	100174670	rs12145706	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:28:32:0.563:2	./.	./.	./.	./.
chr1	100178020	rs200193081	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,67:31:136:0.493:2	0/1:43,27:31:70:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100195220	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,60:33:192:0.313:2
chr1	100203648	rs7537296	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,62:31:190:0.326:2	./.	0/1:3,114:31:117:0.974:2	0/1:117,77:31:194:0.397:2	0/1:105,75:32:180:0.417:2	0/1:104,60:31:164:0.366:2	./.
chr1	100203693	rs7514021	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	0/1:94,54:31:148:0.365:2	./.	0/1:2,95:31:97:0.979:2	0/1:81,82:31:163:0.503:2	0/1:93,71:32:164:0.433:2	0/1:79,63:32:142:0.444:2	./.
chr1	100206425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,6:32:129:0.047:2	./.	./.	./.	./.	./.
chr1	100207818	rs41285734	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,29:33:74:0.392:2	./.	./.	./.	./.
chr1	100316589	rs2307130	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,19:33:51:0.373:2	0/1:17,15:32:32:0.469:2	./.	0/1:0,37:32:37:1.00:2	0/1:11,7:32:18:0.389:2	./.	0/1:10,17:32:27:0.630:2	0/1:36,14:32:50:0.280:2	./.	0/1:25,15:32:41:0.375:2	0/1:0,57:33:57:1.00:2
chr1	100327026	rs2307129	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,28:32:54:0.519:2	0/1:28,37:32:65:0.569:2	0/1:79,44:32:123:0.358:2	./.	./.
chr1	100336361	rs2230306	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,31:33:88:0.352:2	0/1:31,26:32:57:0.456:2	./.	0/1:1,69:31:70:0.986:2	0/1:38,28:31:66:0.424:2	./.	0/1:0,56:32:56:1.00:2	0/1:0,60:32:60:1.00:2	0/1:61,35:33:96:0.365:2	0/1:32,32:32:64:0.500:2	0/1:0,112:32:112:1.00:2
chr1	100358103	rs3753494	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,57:32:110:0.518:2	0/1:50,53:32:103:0.515:2	./.	./.
chr1	100361925	rs2230307	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,52:32:149:0.349:2	0/1:36,39:32:76:0.520:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100379198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.
chr1	100472604	rs534252	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,16:32:27:0.593:2	0/1:11,3:33:14:0.214:2	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	./.	./.
chr1	100515497	rs17121792	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,34:30:83:0.410:2	0/1:23,27:29:50:0.540:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100533712	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100572459	rs17121889	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,44:31:126:0.349:2	0/1:57,28:31:85:0.329:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100575933	rs13375867	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,57:32:127:0.449:2	0/1:49,32:31:81:0.395:2	0/1:9,9:32:18:0.500:2	0/1:3,158:31:161:0.981:2	./.	./.	0/1:42,35:32:77:0.455:2	./.	./.	0/1:68,56:32:124:0.452:2	0/1:0,189:32:189:1.00:2
chr1	100598866	rs472498	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,18:31:38:0.474:2	0/1:8,18:31:26:0.692:2	0/1:0,7:32:7:1.00:2	0/1:0,35:31:35:1.00:2	0/1:20,29:31:49:0.592:2	0/1:0,44:30:44:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,45:32:45:1.00:2
chr1	100598867	rs687513	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,18:30:38:0.474:2	0/1:8,18:31:26:0.692:2	0/1:0,7:32:7:1.00:2	0/1:0,35:32:35:1.00:2	0/1:19,29:31:48:0.604:2	0/1:0,44:30:44:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,45:32:45:1.00:2
chr1	100602507	rs200608313	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:33:93:0.452:2	./.	./.
chr1	100609639	rs6681721	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:32:47:0.468:2	0/1:31,17:32:48:0.354:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100671866	rs34229137	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:28:8:1.00:2	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	0/1:4,7:26:11:0.636:2	0/1:4,8:29:12:0.667:2
chr1	100672060	rs12021720	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,60:32:60:1.00:2	0/1:32,24:31:56:0.429:2	0/1:0,64:32:64:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,73:33:73:1.00:2
chr1	100736221	rs77300480	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100817384	rs28361189	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.
chr1	100949860	rs2270694	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,3:32:18:0.167:2	0/1:3,7:32:10:0.700:2	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.	./.	./.	./.
chr1	101005855	rs2809818	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:33:27:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,22:32:22:1.00:2	0/1:11,14:33:25:0.560:2	0/1:0,17:33:17:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,29:33:29:1.00:2
chr1	101006043	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.
chr1	101006240	rs41309189	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,22:32:40:0.550:2	0/1:10,12:32:22:0.545:2	./.	0/1:18,12:30:30:0.400:2	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.
chr1	101006577	rs2030048	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:64,47:33:111:0.423:2	0/1:38,22:32:60:0.367:2	0/1:0,8:32:8:1.00:2	./.	0/1:35,38:32:73:0.521:2	./.	0/1:43,43:32:86:0.500:2	0/1:59,67:32:126:0.532:2	./.	./.	./.
chr1	101007036	rs2809817	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,22:28:56:0.393:2	0/1:25,22:28:47:0.468:2	./.	./.	0/1:27,25:28:52:0.481:2	./.	./.	0/1:52,49:28:101:0.485:2	./.	./.	./.
chr1	101007055	rs2030049	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,6:32:6:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,68:31:68:1.00:2	0/1:51,12:32:63:0.190:2	0/1:1,69:32:70:0.986:2	0/1:0,81:33:81:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,71:32:71:1.00:2
chr1	101007459	rs4615860	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,55:31:119:0.462:2	0/1:46,22:32:68:0.324:2	./.	0/1:60,49:32:109:0.450:2	0/1:60,43:32:103:0.417:2	./.	./.	./.	./.	./.	./.
chr1	101007504	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	101188639	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:34:32:0.594:2	./.	./.
chr1	101190447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	101200108	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.
chr1	101203698	rs3176878	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,82:31:83:0.988:2	0/1:1,55:32:56:0.982:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	101203827	rs3176879	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,131:31:131:1.00:2	0/1:0,87:31:87:1.00:2	0/1:78,69:31:147:0.469:2	0/1:0,143:32:143:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,125:32:125:1.00:2
chr1	101339977	rs184097400	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,25:30:58:0.431:2	./.	./.	./.	./.	./.	./.
chr1	101387303	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:34:62:0.065:2	./.
chr1	101706246	rs114115083	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,85:33:164:0.518:2	0/1:54,65:32:119:0.546:2	./.	./.
chr1	102269923	rs111710000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:31:59:0.492:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	102270424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:33:34:0.118:2	./.
chr1	102296279	rs10493973	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,44:33:72:0.611:2	0/1:26,23:32:49:0.469:2	./.	./.	./.	0/1:60,47:32:107:0.439:2	./.	0/1:59,58:32:118:0.496:2	./.	./.	0/1:81,56:32:137:0.409:2
chr1	103352451	rs2229783	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,126:31:126:1.00:2	0/1:1,61:30:62:0.984:2	0/1:8,8:27:16:0.500:2	0/1:75,91:30:166:0.548:2	0/1:0,94:29:94:1.00:2	0/1:61,76:30:137:0.555:2	0/1:0,109:29:110:1.00:2	0/1:96,69:31:165:0.418:2	0/1:0,186:31:186:1.00:2	0/1:6,143:30:149:0.960:2	0/1:97,87:30:184:0.473:2
chr1	103354115	rs17127203	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:32:58:0.483:2	./.	./.	./.
chr1	103354138	rs1676486	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,40:31:41:0.976:2	0/1:0,16:32:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,38:32:39:0.974:2	0/1:2,41:32:43:0.953:2	0/1:23,26:32:49:0.531:2	0/1:0,68:33:68:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,54:32:54:1.00:2
chr1	103354424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2
chr1	103354428	rs1763347	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:33:103:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,7:33:7:1.00:2	0/1:3,97:33:101:0.970:2	0/1:0,66:33:66:1.00:2	./.	0/1:1,65:33:66:0.985:2	0/1:34,46:33:80:0.575:2	0/1:1,111:34:112:0.991:2	0/1:0,72:33:72:1.00:2	0/1:0,133:33:133:1.00:2
chr1	103379918	rs3753841	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,25:33:25:1.00:2	0/1:2,4:32:6:0.667:2	0/1:23,39:32:62:0.629:2	0/1:0,45:33:45:1.00:2	0/1:18,38:32:56:0.679:2	0/1:0,33:33:33:1.00:2	0/1:44,29:32:73:0.397:2	0/1:0,76:33:76:1.00:2	0/1:0,50:32:50:1.00:2	0/1:30,58:32:88:0.659:2
chr1	103405892	rs17127270	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,16:30:46:0.348:2	./.	./.	./.	./.	0/1:39,28:32:67:0.418:2
chr1	103427407	rs1012281	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:33:88:0.511:2
chr1	103444679	rs11164649	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,28:32:28:1.00:2	0/1:2,2:34:4:0.500:2	0/1:15,35:33:50:0.700:2	0/1:0,36:32:36:1.00:2	0/1:0,43:32:43:1.00:2	0/1:20,16:32:36:0.444:2	0/1:0,44:32:44:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,32:31:32:1.00:2	./.
chr1	103468295	rs2622875	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:30:9:0.444:2	0/1:46,25:31:71:0.352:2	./.	./.	./.	./.	./.	./.	./.
chr1	103468336	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,15:15:56:0.268:2	./.	./.	0/1:46,17:17:63:0.270:2	0/1:21,14:15:35:0.400:2	0/1:48,21:16:69:0.304:2	0/1:26,11:13:37:0.297:2	0/1:63,36:15:99:0.364:2	0/1:54,27:14:81:0.333:2	0/1:33,14:17:49:0.298:2	0/1:55,25:16:81:0.313:2
chr1	103468767	rs12136577	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.	./.	0/1:64,38:33:102:0.373:2
chr1	103470191	rs111841420	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:30:30:0.567:2	0/1:57,73:30:130:0.562:2	./.	./.	./.	./.	./.	./.	./.
chr1	103487244	rs34587338	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:33:12:0.583:2	0/1:37,48:33:85:0.565:2	./.	./.	./.	./.	./.	./.	./.
chr1	103488480	rs141036911	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:32:26:0.654:2	./.	./.	./.	./.	./.	./.	./.
chr1	103491461	rs12731843	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr1	103496792	rs71664966	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:12,15:33:27:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr1	103548497	rs11164663	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,58:33:90:0.644:2
chr1	103573656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.
chr1	104114279	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:29:198:0.030:2	./.	0/1:128,69:32:197:0.350:2	./.	./.	./.	./.	./.
chr1	104114299	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,5:30:199:0.025:2	./.	0/1:187,6:30:193:0.031:2	./.	./.	./.	./.	./.
chr1	104114758	rs140074022	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr1	104114866	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	0/1:182,5:33:187:0.027:2	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.	./.
chr1	104115722	rs4098273	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,12:32:196:0.061:2	0/1:170,29:31:199:0.146:2	./.	0/1:194,5:31:199:0.025:2	0/1:179,18:32:197:0.091:2	./.	./.	./.
chr1	104115729	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,9:29:196:0.046:2	0/1:188,12:28:200:0.060:2	./.	./.	0/1:187,9:30:196:0.046:2	./.	./.	./.
chr1	104115822	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,6:33:199:0.030:2	0/1:119,4:33:123:0.033:2	./.	0/1:95,4:31:99:0.040:2	0/1:185,5:33:190:0.026:2	0/1:192,6:33:198:0.030:2	./.	./.
chr1	104115867	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,6:31:192:0.031:2	./.	./.	./.	0/1:176,14:30:190:0.074:2	./.	0/1:187,5:31:192:0.026:2	./.
chr1	104116413	rs17851840	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,93:32:188:0.495:2	0/1:85,83:32:169:0.494:2	./.	./.	./.	./.	./.	./.
chr1	104116505	rs201535188	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,7:30:182:0.038:2	./.	./.	0/1:187,8:27:195:0.041:2	./.
chr1	104116530	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,7:25:151:0.046:2	0/1:167,5:27:172:0.029:2	./.	./.	./.	./.	./.
chr1	104116532	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:173,4:32:179:0.023:2	./.	./.	0/1:170,5:31:175:0.029:2	0/1:139,6:33:145:0.041:2	0/1:160,7:25:167:0.042:2	0/1:162,4:32:167:0.024:2	./.	./.	./.	./.
chr1	104116536	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,5:30:173:0.029:2	0/1:137,6:31:143:0.042:2	0/1:158,5:31:163:0.031:2	./.	./.	./.	./.	./.
chr1	104116544	rs137860562	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,36:31:144:0.250:2	./.	./.	./.
chr1	104116929	rs369145442	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,7:31:62:0.113:2	./.	./.	./.
chr1	104116937	rs200275225	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,61:34:108:0.565:2	./.	./.
chr1	104117011	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.	0/1:28,3:31:31:0.097:2	./.	./.	./.	./.	./.
chr1	104117852	rs147215616	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,66:33:153:0.431:2	./.	./.
chr1	104117887	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,5:32:103:0.049:2	./.	./.	0/1:103,6:30:109:0.055:2	./.	./.	./.
chr1	104117929	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:28:69:0.058:2	./.	./.	./.	./.	./.	./.
chr1	104117947	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,5:30:60:0.083:2	./.	./.	./.	./.	./.	./.
chr1	104118069	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,6:30:192:0.031:2	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.
chr1	104118108	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,6:31:156:0.038:2	./.	./.	./.	./.	./.	./.
chr1	104120142	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,5:32:190:0.026:2	./.	./.	0/1:109,8:31:117:0.068:2	0/1:168,10:32:178:0.056:2	./.	0/1:172,4:33:177:0.023:2	./.
chr1	104120155	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,5:32:165:0.030:2	0/1:98,4:31:102:0.039:2	./.	0/1:89,8:31:97:0.082:2	0/1:139,12:30:151:0.079:2	./.	0/1:152,4:32:156:0.026:2	./.
chr1	104120227	rs151132065	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:32:130:0.423:2
chr1	104122014	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,7:33:197:0.036:2	0/1:162,5:31:167:0.030:2	./.	./.	./.	./.	./.	./.
chr1	104122032	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,6:31:188:0.032:2	0/1:157,9:31:166:0.054:2	0/1:191,6:31:197:0.030:2	0/1:149,4:31:153:0.026:2	0/1:191,5:31:196:0.026:2	./.	./.	./.
chr1	104122044	rs370640522	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:176,5:33:181:0.028:2	./.	./.	0/1:166,11:31:177:0.062:2	0/1:144,13:31:157:0.083:2	0/1:168,9:31:177:0.051:2	./.	0/1:173,6:30:179:0.034:2	./.	0/1:168,4:31:172:0.023:2	./.
chr1	104122083	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:34:111:0.036:2	./.	./.
chr1	104122119	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	./.
chr1	104160069	rs369993142	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr1	104160117	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	0/1:173,22:31:195:0.113:2	./.	./.	./.	./.	./.
chr1	104160137	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:30:196:0.031:2	./.	./.	./.	./.	./.
chr1	104160209	rs150128174	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:32:197:0.031:2	./.	./.	./.	./.
chr1	104160600	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,93:30:192:0.484:2	./.	./.	./.	./.	./.	./.
chr1	104160606	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr1	104160710	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,8:32:156:0.051:2	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.
chr1	104161715	rs201745025	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:32:200:0.020:2
chr1	104162293	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:187:0.022:2	./.	./.	./.
chr1	104162351	rs140204075	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,39:31:147:0.265:2	./.	./.	0/1:130,51:31:181:0.282:2	./.
chr1	104163262	rs201666814	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,29:31:96:0.302:2	0/1:71,10:32:81:0.123:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104163266	rs141685988	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:68,26:31:94:0.277:2	0/1:67,9:31:76:0.118:2	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	0/1:112,18:31:130:0.138:2	0/1:60,15:31:75:0.200:2	0/1:66,20:31:86:0.233:2	./.
chr1	104164458	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	0/1:175,5:32:180:0.028:2	0/1:185,5:32:190:0.026:2	./.	./.	./.
chr1	104166496	rs1140401	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,35:31:181:0.193:2	0/1:158,37:29:195:0.190:2	0/1:68,28:29:96:0.292:2	0/1:2,187:30:189:0.989:2	0/1:122,69:29:191:0.361:2	0/1:175,19:28:194:0.098:2	0/1:160,37:30:197:0.188:2	0/1:176,18:30:194:0.093:2	0/1:152,47:31:199:0.236:2	0/1:160,33:30:193:0.171:2	0/1:91,92:29:183:0.503:2
chr1	104166598	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104166603	rs200968096	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2
chr1	104199055	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,5:31:133:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104200553	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:34:197:0.025:2	./.	./.	./.	./.
chr1	104200598	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,7:29:199:0.035:2	./.	./.	./.	./.
chr1	104201109	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,25:33:196:0.128:2	0/1:181,13:32:195:0.067:2	./.	./.	./.	./.	./.	./.
chr1	104201179	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,32:32:197:0.162:2	0/1:181,19:32:200:0.095:2	./.	./.	./.	./.	./.	./.
chr1	104203251	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,38:32:195:0.195:2	0/1:190,8:31:198:0.040:2	./.	./.	./.	./.	./.	./.
chr1	104233963	rs199554865	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,24:32:199:0.121:2	0/1:187,10:31:197:0.051:2	./.	./.	./.	./.	./.	./.
chr1	104236035	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,21:33:199:0.106:2	0/1:184,15:33:199:0.075:2	./.	./.	./.	./.	./.	./.
chr1	104236105	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,14:31:197:0.071:2	0/1:191,7:32:198:0.035:2	./.	./.	./.	./.	./.	./.
chr1	104238159	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,14:32:143:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104293194	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,17:32:172:0.099:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104295248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,15:33:200:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr1	104295318	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,37:33:199:0.186:2	0/1:171,26:32:197:0.132:2	./.	./.	./.	./.	./.	./.
chr1	104297389	rs140363602	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,26:32:197:0.132:2	0/1:173,26:30:199:0.131:2	./.	./.	./.	./.	./.	./.
chr1	107599853	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.	./.
chr1	107599918	rs2232016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,92:30:94:0.989:2	0/1:33,38:31:71:0.535:2	./.	./.
chr1	107600869	rs3791185	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:39,35:32:75:0.473:2	./.	0/1:46,44:32:91:0.489:2	0/1:28,28:32:56:0.500:2	./.	./.	0/1:33,25:32:58:0.431:2	0/1:52,60:32:112:0.536:2
chr1	107961196	rs17530804	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:32:67:0.493:2	./.	./.	./.	./.	0/1:48,47:33:95:0.495:2	./.	./.
chr1	107979396	rs480392	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:33:157:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,176:32:176:1.00:2	0/1:1,176:32:177:0.994:2	0/1:0,186:33:186:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,173:33:173:1.00:2	0/1:1,140:32:141:0.993:2	0/1:0,169:32:169:1.00:2
chr1	108138961	rs17229705	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:32:50:0.400:2	./.	./.	./.
chr1	108152591	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:34:49:0.063:2	./.	./.	./.
chr1	108185301	rs12403266	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:33:65:0.523:2	0/1:21,24:32:45:0.533:2	0/1:23,25:32:48:0.521:2	./.	./.	./.
chr1	108185309	rs12410676	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:32:66:0.530:2	./.	0/1:22,23:32:45:0.511:2	./.	./.	./.
chr1	108307727	rs7528153	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,94:32:97:0.969:2	0/1:0,52:32:52:1.00:2	0/1:0,18:31:18:1.00:2	0/1:2,112:32:114:0.982:2	./.	0/1:59,52:31:111:0.468:2	0/1:4,73:32:77:0.948:2	0/1:65,51:32:116:0.440:2	0/1:85,59:32:144:0.410:2	0/1:47,38:32:85:0.447:2	0/1:1,133:32:134:0.993:2
chr1	108313258	rs6583048	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:33:77:0.987:2	0/1:0,42:33:42:1.00:2	0/1:0,10:31:10:1.00:2	0/1:2,92:32:94:0.979:2	0/1:43,22:32:65:0.338:2	0/1:66,38:32:104:0.365:2	0/1:3,53:32:56:0.946:2	0/1:67,36:32:103:0.350:2	0/1:73,34:34:107:0.318:2	0/1:49,30:33:79:0.380:2	0/1:1,121:33:122:0.992:2
chr1	108728484	rs862493	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:53,54:33:108:0.505:2	0/1:35,26:33:61:0.426:2	./.	./.	0/1:32,31:32:63:0.492:2	./.	./.	./.	0/1:63,65:33:128:0.508:2	./.	0/1:86,51:33:137:0.372:2
chr1	108769358	rs371824699	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,10:29:48:0.208:2	./.	./.	0/1:152,46:30:198:0.232:2	./.	./.	0/1:164,27:31:191:0.141:2	0/1:186,12:31:198:0.061:2	./.
chr1	108771721	rs79996376	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,8:29:24:0.333:2	0/1:138,58:29:196:0.296:2	./.	./.	0/1:141,57:29:198:0.288:2	0/1:131,62:29:193:0.321:2	./.	0/1:102,92:29:194:0.474:2	0/1:133,56:28:189:0.296:2
chr1	108775757	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,32:32:195:0.164:2	0/1:151,43:31:194:0.222:2	./.	./.	./.	0/1:157,39:31:196:0.199:2	./.	./.	./.	./.	./.
chr1	108775810	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,11:32:197:0.056:2	0/1:191,6:27:197:0.030:2	0/1:190,8:31:198:0.040:2	0/1:186,13:32:200:0.065:2	./.	0/1:189,7:33:196:0.036:2	0/1:174,24:32:198:0.121:2	0/1:183,13:32:196:0.066:2
chr1	108777900	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:104,93:32:197:0.472:2	0/1:125,72:32:197:0.365:2	0/1:117,23:31:140:0.164:2	./.	0/1:164,34:31:198:0.172:2	0/1:62,136:31:198:0.687:2	./.	./.	0/1:157,42:33:199:0.211:2	0/1:161,36:32:197:0.183:2	./.
chr1	108779924	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,10:30:79:0.128:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	108781440	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:137,49:32:186:0.263:2	0/1:146,49:32:195:0.251:2	0/1:162,26:32:188:0.138:2	./.	0/1:172,21:32:193:0.109:2	0/1:128,65:32:193:0.337:2	./.	./.	./.	0/1:178,15:33:193:0.078:2	./.
chr1	108781556	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:148,20:31:169:0.119:2	0/1:157,18:32:175:0.103:2	./.	./.	./.	./.	0/1:145,16:31:161:0.099:2	./.	./.	./.	./.
chr1	108786278	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,25:33:197:0.127:2	0/1:170,27:33:197:0.137:2	./.	./.	./.	0/1:163,35:32:198:0.177:2	./.	./.	./.	./.	./.
chr1	108993329	rs201998872	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,41:33:196:0.209:2	0/1:165,27:33:192:0.141:2	./.	./.	./.	0/1:174,24:32:198:0.121:2	./.	./.	./.	./.	./.
chr1	108998033	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:177,17:32:194:0.088:2	0/1:163,34:32:197:0.173:2	./.	./.	./.	./.	0/1:174,23:32:197:0.117:2	./.	./.	./.	./.
chr1	108998149	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:131,58:33:189:0.307:2	0/1:134,62:32:196:0.316:2	0/1:142,34:31:176:0.193:2	./.	0/1:166,28:31:194:0.144:2	0/1:96,96:32:192:0.500:2	./.	./.	./.	0/1:165,24:33:189:0.127:2	./.
chr1	108999665	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,22:31:77:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	109001689	rs201936153	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:122,75:32:197:0.381:2	0/1:121,77:32:198:0.389:2	0/1:96,19:31:115:0.165:2	./.	0/1:165,35:32:200:0.175:2	0/1:71,123:31:194:0.634:2	./.	./.	0/1:166,32:33:198:0.162:2	0/1:153,46:32:199:0.231:2	./.
chr1	109002650	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,15:31:195:0.077:2	./.	./.	./.	./.
chr1	109003778	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,11:32:196:0.056:2	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.	0/1:186,9:31:195:0.046:2
chr1	109003831	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,34:32:171:0.199:2	0/1:151,40:31:192:0.209:2	./.	./.	./.	0/1:146,33:31:179:0.184:2	./.	./.	./.	./.	./.
chr1	109004552	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,5:26:157:0.032:2	./.	./.	./.	./.	./.	./.	0/1:189,6:25:195:0.031:2
chr1	109007881	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	0/1:124,4:30:128:0.031:2	./.	./.	./.
chr1	109010230	rs201618980	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,34:30:147:0.231:2	./.	./.	0/1:163,28:31:191:0.147:2	./.	./.	0/1:144,51:32:195:0.262:2	0/1:154,42:32:196:0.214:2	./.
chr1	109013235	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:35:156:0.026:2	./.	./.	./.	./.
chr1	109260475	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:34:66:0.061:2	./.	./.	./.	./.	./.	./.
chr1	109265029	rs4423040	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,40:33:93:0.430:2	0/1:31,24:32:55:0.436:2	./.	0/1:65,43:33:108:0.398:2	0/1:46,31:33:77:0.403:2	./.	0/1:0,77:32:77:1.00:2	0/1:60,48:33:108:0.444:2	0/1:0,80:33:80:1.00:2	0/1:47,47:33:94:0.500:2	0/1:1,86:32:87:0.989:2
chr1	109268441	rs11582005	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,68:31:121:0.562:2	0/1:51,62:32:113:0.549:2	./.	./.	./.	./.	0/1:80,103:31:183:0.563:2	./.	0/1:1,190:32:191:0.995:2	./.	0/1:92,95:31:187:0.508:2
chr1	109268573	rs4494160	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,151:32:154:0.981:2	0/1:1,105:32:106:0.991:2	0/1:22,7:32:29:0.241:2	0/1:94,94:33:188:0.500:2	0/1:2,141:31:145:0.986:2	0/1:0,181:32:181:1.00:2	0/1:0,179:32:179:1.00:2	0/1:94,91:32:185:0.492:2	0/1:0,176:33:176:1.00:2	0/1:105,65:32:170:0.382:2	0/1:1,174:32:175:0.994:2
chr1	109271348	rs11583590	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,65:33:184:0.353:2
chr1	109273456	rs4970809	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	0/1:53,37:31:90:0.411:2	0/1:2,86:32:88:0.977:2	0/1:52,50:32:102:0.490:2	0/1:50,47:30:97:0.485:2	0/1:0,83:32:83:1.00:2	0/1:40,24:32:64:0.375:2	0/1:0,69:32:69:1.00:2
chr1	109289353	rs1124427	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:32:22:1.00:2	0/1:64,44:32:108:0.407:2	0/1:91,55:30:146:0.377:2	0/1:0,130:32:130:1.00:2	0/1:3,89:31:92:0.967:2	0/1:85,65:32:150:0.433:2	0/1:2,82:33:84:0.976:2	0/1:25,30:32:55:0.545:2	0/1:1,69:31:70:0.986:2
chr1	109338861	rs1127635	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:30:24:1.00:2	./.	0/1:67,65:30:132:0.492:2	0/1:1,138:30:139:0.993:2	0/1:80,67:30:147:0.456:2	0/1:103,61:30:164:0.372:2	0/1:4,172:32:177:0.977:2	0/1:80,81:31:161:0.503:2	0/1:0,190:31:191:1.00:2
chr1	109338877	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.
chr1	109351501	rs1149154	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,18:30:19:0.947:2	0/1:0,16:31:16:1.00:2	./.	0/1:16,15:31:31:0.484:2	0/1:14,4:31:18:0.222:2	./.	./.	0/1:10,18:30:28:0.643:2	./.	0/1:15,7:27:22:0.318:2	./.
chr1	109363232	rs1333130	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,26:33:28:0.929:2	0/1:0,9:33:9:1.00:2	./.	./.	0/1:16,7:34:23:0.304:2	./.	./.	0/1:11,4:33:15:0.267:2	./.	0/1:18,8:33:26:0.308:2	./.
chr1	109365842	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr1	109366286	rs7522157	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	0/1:3,104:30:107:0.972:2	0/1:90,74:30:164:0.451:2	./.	./.	0/1:110,78:31:188:0.415:2	0/1:85,68:31:153:0.444:2	0/1:1,150:31:151:0.993:2
chr1	109369915	rs7551421	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,39:33:39:1.00:2	0/1:23,11:33:34:0.324:2	0/1:41,21:32:62:0.339:2	0/1:0,37:32:37:1.00:2	0/1:1,28:32:29:0.966:2	0/1:40,27:33:67:0.403:2	./.	0/1:53,38:32:91:0.418:2
chr1	109377070	rs12060255	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,8:32:25:0.320:2	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.
chr1	109391662	rs11580913	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,12:33:17:0.706:2
chr1	109394564	rs17030016	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,48:29:79:0.608:2	0/1:20,22:28:42:0.524:2	./.	0/1:50,36:31:86:0.419:2	./.	./.	./.	./.	./.	0/1:36,56:29:92:0.609:2	./.
chr1	109394976	rs17621411	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,43:30:78:0.551:2	./.	./.	./.	./.	./.	./.
chr1	109394978	rs17563390	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,64:31:139:0.460:2
chr1	109395105	rs1277207	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,38:32:115:0.330:2	0/1:41,25:32:66:0.379:2	0/1:6,3:32:9:0.333:2	0/1:55,29:31:84:0.345:2	0/1:40,43:30:83:0.518:2	0/1:74,52:31:126:0.413:2	0/1:47,27:32:74:0.365:2	0/1:2,116:31:118:0.983:2	0/1:0,114:32:114:1.00:2	0/1:59,32:32:91:0.352:2	0/1:0,110:32:110:1.00:2
chr1	109395260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,3:34:65:0.046:2
chr1	109440215	rs41279678	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,16:31:23:0.696:2	./.	0/1:17,7:31:24:0.292:2	./.	./.	./.	./.
chr1	109466858	rs705268	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	0/1:64,55:31:119:0.462:2	0/1:95,73:31:168:0.435:2	0/1:74,48:32:122:0.393:2	./.	./.	./.	0/1:100,78:32:178:0.438:2
chr1	109474027	rs9727038	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:31:83:0.470:2	./.	./.
chr1	109477466	rs372290951	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:111,8:21:119:0.067:2	./.	./.	./.	0/1:108,8:19:116:0.069:2	./.	0/1:107,10:20:118:0.085:2	./.	0/1:123,9:24:132:0.068:2	./.	./.
chr1	109479978	rs168107	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,23:33:46:0.500:2	0/1:20,23:32:43:0.535:2	0/1:4,4:32:8:0.500:2	0/1:32,25:32:57:0.439:2	0/1:40,25:32:65:0.385:2	0/1:22,21:31:43:0.488:2	0/1:13,21:32:34:0.618:2	./.	./.	0/1:16,28:32:44:0.636:2	0/1:48,36:32:84:0.429:2
chr1	109486196	rs338466	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,115:30:118:0.975:2	0/1:0,73:29:73:1.00:2	0/1:8,3:30:11:0.273:2	0/1:78,91:30:169:0.538:2	./.	0/1:95,81:30:176:0.460:2	0/1:5,127:29:132:0.962:2	0/1:97,83:30:180:0.461:2	./.	0/1:72,77:30:149:0.517:2	0/1:93,67:30:160:0.419:2
chr1	109529213	rs41299563	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,85:33:164:0.521:2
chr1	109544943	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.	./.
chr1	109649162	rs62623711	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	109656931	rs139816507	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,52:30:149:0.349:2	./.	./.	./.
chr1	109656946	rs667524	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:28:20:0.450:2	0/1:88,47:26:135:0.348:2	0/1:75,44:27:119:0.370:2	0/1:88,40:28:128:0.313:2	0/1:61,31:28:92:0.337:2	0/1:90,48:27:138:0.348:2	0/1:0,109:29:109:1.00:2	./.	./.
chr1	109704525	rs74920406	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,44:31:112:0.393:2	0/1:27,17:31:44:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:32:94:0.436:2
chr1	109704618	rs678238	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,49:30:50:0.980:2	0/1:0,53:31:53:1.00:2	0/1:0,28:30:28:1.00:2
chr1	109714635	rs34364548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:32:80:0.450:2	./.	./.	./.	./.
chr1	109735298	rs658779	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,85:30:168:0.506:2	0/1:48,58:30:106:0.547:2	0/1:1,36:30:37:0.973:2	0/1:0,167:29:167:1.00:2	0/1:97,76:28:173:0.439:2	./.	0/1:3,161:29:165:0.982:2	0/1:3,142:29:145:0.979:2	0/1:1,172:31:173:0.994:2	0/1:0,170:30:170:1.00:2	0/1:106,70:31:178:0.398:2
chr1	109735416	rs659543	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,60:31:133:0.455:2	0/1:44,31:32:75:0.413:2	0/1:0,17:32:17:1.00:2	0/1:0,167:33:167:1.00:2	0/1:89,71:31:160:0.444:2	./.	0/1:1,120:32:121:0.992:2	0/1:1,129:32:130:0.992:2	0/1:1,139:33:140:0.993:2	0/1:1,117:32:118:0.992:2	0/1:87,76:32:163:0.466:2
chr1	109737063	rs2359246	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:32:53:0.434:2	0/1:19,10:31:29:0.345:2	0/1:0,5:31:5:1.00:2	0/1:0,74:31:74:1.00:2	0/1:52,22:31:74:0.297:2	./.	0/1:0,55:31:55:1.00:2	0/1:2,70:31:72:0.972:2	0/1:0,72:32:72:1.00:2	0/1:0,44:31:44:1.00:2	0/1:41,34:31:75:0.453:2
chr1	109737090	rs2359245	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,28:32:63:0.444:2	0/1:21,9:31:30:0.300:2	0/1:0,6:31:6:1.00:2	0/1:0,78:31:78:1.00:2	0/1:63,29:31:93:0.315:2	./.	0/1:0,63:31:63:1.00:2	0/1:2,85:32:87:0.977:2	0/1:0,77:32:77:1.00:2	0/1:0,51:31:51:1.00:2	0/1:52,37:31:89:0.416:2
chr1	109737132	rs2359244	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,27:29:67:0.403:2	0/1:22,11:31:33:0.333:2	0/1:0,9:29:9:1.00:2	0/1:0,72:29:72:1.00:2	0/1:54,37:28:91:0.407:2	./.	0/1:0,59:29:59:1.00:2	0/1:0,103:29:103:1.00:2	0/1:0,83:29:83:1.00:2	0/1:1,60:30:61:0.984:2	0/1:67,28:30:95:0.295:2
chr1	109737172	rs2359243	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:32:53:0.434:2	0/1:18,16:32:34:0.471:2	0/1:0,13:30:13:1.00:2	0/1:0,60:31:60:1.00:2	0/1:33,36:31:69:0.522:2	./.	0/1:0,47:31:47:1.00:2	0/1:3,86:30:89:0.966:2	0/1:0,72:32:72:1.00:2	0/1:0,67:31:67:1.00:2	0/1:85,40:32:125:0.320:2
chr1	109742485	rs913179	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,24:32:24:1.00:2	0/1:15,12:33:27:0.444:2	0/1:17,9:30:26:0.346:2	0/1:0,38:32:38:1.00:2	0/1:23,20:32:43:0.465:2	0/1:1,22:33:23:0.957:2	0/1:9,13:33:22:0.591:2	0/1:0,25:31:25:1.00:2
chr1	109745618	rs1052878	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,47:33:47:1.00:2	0/1:32,26:31:59:0.448:2	0/1:0,52:29:52:1.00:2
chr1	109771063	rs683182	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,28:33:83:0.337:2	0/1:31,22:33:53:0.415:2	0/1:3,6:34:9:0.667:2	0/1:0,109:32:109:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,85:32:85:1.00:2	0/1:40,36:33:76:0.474:2	0/1:0,113:33:113:1.00:2	0/1:44,52:34:96:0.542:2	0/1:0,84:33:84:1.00:2	0/1:2,106:33:108:0.981:2
chr1	109794252	rs454107	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:30:91:1.00:2	0/1:0,69:30:69:1.00:2	0/1:11,3:30:14:0.214:2	0/1:0,125:30:125:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,143:30:143:1.00:2	0/1:1,176:30:177:0.994:2	0/1:1,156:30:157:0.994:2	0/1:0,122:31:122:1.00:2	0/1:1,105:31:106:0.991:2	0/1:0,130:30:130:1.00:2
chr1	109794316	rs138919468	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,70:32:168:0.417:2
chr1	109795026	rs413380	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,29:29:29:1.00:2	./.	0/1:1,57:29:58:0.983:2	0/1:0,70:29:70:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,79:29:79:1.00:2	0/1:1,58:29:59:0.983:2	0/1:0,51:30:52:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,47:29:47:1.00:2
chr1	109795608	rs437444	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,75:32:77:0.974:2	0/1:0,40:32:40:1.00:2	./.	0/1:0,95:33:95:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,86:33:86:1.00:2	0/1:1,65:32:66:0.985:2	0/1:0,82:32:82:1.00:2
chr1	109801121	rs684138	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,72:32:144:0.500:2	./.	./.	./.	0/1:87,91:32:178:0.511:2	./.	0/1:83,60:32:143:0.420:2	./.
chr1	109801620	rs200857942	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	109806313	rs653635	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,62:31:148:0.419:2	./.	./.	./.	0/1:94,49:30:144:0.343:2	./.	0/1:61,46:30:107:0.430:2	./.
chr1	109806834	rs6698843	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,17:32:26:0.654:2	0/1:6,11:31:17:0.647:2	./.	0/1:12,18:30:30:0.600:2	0/1:1,44:30:45:0.978:2	0/1:18,31:31:49:0.633:2	./.	./.	0/1:10,9:31:19:0.474:2	0/1:9,13:31:22:0.591:2	0/1:12,16:31:29:0.571:2
chr1	109807099	rs6689614	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,13:32:33:0.394:2	0/1:13,13:32:26:0.500:2	./.	0/1:32,32:32:64:0.500:2	0/1:0,78:31:78:1.00:2	0/1:41,30:31:71:0.423:2	./.	./.	0/1:26,26:32:52:0.500:2	0/1:16,23:31:39:0.590:2	0/1:20,24:31:44:0.545:2
chr1	109810183	rs61761209	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:30:48:0.542:2	./.
chr1	109810544	rs2281894	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	0/1:0,52:30:52:1.00:2	./.	0/1:24,25:32:49:0.510:2	./.	./.
chr1	109815304	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	./.	./.
chr1	109816176	rs441853	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:29:3:1.00:2	0/1:0,5:29:5:1.00:2	./.	0/1:0,6:26:6:1.00:2	0/1:0,5:25:5:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,8:28:8:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.
chr1	109824250	rs35358959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,51:31:139:0.367:2	./.	./.
chr1	109825360	rs643457	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,90:32:90:1.00:2	0/1:1,106:33:107:0.991:2	0/1:1,93:33:94:0.989:2	0/1:0,70:32:70:1.00:2	0/1:0,80:32:80:1.00:2
chr1	109836835	rs3738777	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:30:21:1.00:2	./.	0/1:80,98:29:178:0.551:2	./.	0/1:79,103:30:182:0.566:2	0/1:94,89:30:184:0.486:2	./.	0/1:75,91:30:166:0.548:2	0/1:97,87:30:184:0.473:2
chr1	109836842	rs646335	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,122:30:124:0.984:2	0/1:0,63:30:63:1.00:2	./.	0/1:1,164:30:166:0.994:2	0/1:98,75:29:173:0.434:2	0/1:0,164:30:164:1.00:2	0/1:104,70:30:174:0.402:2	0/1:100,76:30:176:0.432:2	0/1:0,179:32:179:1.00:2	0/1:95,72:31:167:0.431:2	0/1:85,94:31:179:0.525:2
chr1	109838918	rs629001	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,35:31:35:1.00:2	0/1:1,44:30:45:0.978:2	0/1:0,50:32:50:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,47:30:47:1.00:2
chr1	109839433	rs1278285	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:32:163:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,191:32:191:1.00:2	0/1:0,175:33:175:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,188:33:188:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,153:32:153:1.00:2
chr1	109839738	rs3850615	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,70:31:163:0.429:2	./.	./.	./.	0/1:94,68:32:162:0.420:2	./.	./.	./.
chr1	109884775	rs2228604	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,95:32:95:1.00:2	0/1:14,9:32:23:0.391:2	0/1:0,137:32:137:1.00:2	./.	0/1:3,133:32:136:0.978:2	0/1:1,147:32:149:0.993:2	./.	0/1:88,65:32:154:0.425:2	0/1:2,117:32:119:0.983:2	0/1:1,137:32:138:0.993:2
chr1	109897100	rs72646560	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,32:33:83:0.386:2	./.	./.
chr1	109897103	rs11142	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:33:65:1.00:2	0/1:0,35:32:35:1.00:2	0/1:1,2:32:3:0.667:2	0/1:0,69:33:69:1.00:2	./.	0/1:0,56:33:56:1.00:2	0/1:0,51:33:51:1.00:2	./.	0/1:34,44:34:78:0.564:2	0/1:1,52:33:53:0.981:2	0/1:1,70:33:71:0.986:2
chr1	110019439	rs62623713	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:33:73:0.562:2	./.	./.
chr1	110019482	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,15:12:116:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr1	110020553	rs372991704	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,73:31:157:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr1	110028679	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr1	110086451	rs17575798	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:11,8:30:19:0.421:2	./.
chr1	110148974	rs1799875	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:82,4:33:86:0.047:2	./.	0/1:5,183:32:188:0.973:2	0/1:81,82:32:163:0.503:2	0/1:105,94:32:199:0.472:2	0/1:91,86:33:177:0.486:2	0/1:99,91:33:190:0.479:2	0/1:95,95:33:190:0.500:2	0/1:83,89:33:172:0.517:2	0/1:0,180:33:181:1.00:2
chr1	110162918	rs28362580	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:30:19:0.474:2	./.	./.	./.	./.	./.	./.	0/1:65,51:30:116:0.440:2	./.
chr1	110163879	rs28362581	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:30:20:0.550:2	./.	./.	./.	./.	./.	./.	0/1:49,54:30:103:0.524:2	./.
chr1	110169450	rs75736595	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,7:18:43:0.163:2	./.	./.	./.	./.	0/1:34,9:16:43:0.209:2	./.	./.	./.	./.	./.
chr1	110170896	rs863978	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,60:29:60:1.00:2	0/1:0,28:28:28:1.00:2	./.	0/1:3,66:29:69:0.957:2	./.	0/1:0,76:28:76:1.00:2	0/1:0,121:29:121:1.00:2	./.	0/1:33,49:29:82:0.598:2	0/1:26,29:30:55:0.527:2	0/1:33,28:29:61:0.459:2
chr1	110173775	rs568686	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,104:31:104:1.00:2	0/1:0,66:31:66:1.00:2	./.	0/1:78,60:30:138:0.435:2	./.	0/1:67,73:30:140:0.521:2	0/1:83,83:31:166:0.500:2	./.	./.	./.	./.
chr1	110199045	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2
chr1	110199368	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:27:115:0.043:2	./.	./.	./.	./.
chr1	110200256	rs375225696	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:105,5:32:110:0.045:2	./.	0/1:194,5:31:199:0.025:2	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.
chr1	110200266	rs145858198	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:107,5:33:113:0.045:2	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.	./.	0/1:186,4:35:190:0.021:2	./.	./.
chr1	110200445	rs142265412	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:31:175:0.029:2	./.	./.	./.	./.	./.
chr1	110201644	rs17838158	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr1	110201699	rs506008	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,88:32:90:0.978:2	0/1:101,89:33:190:0.468:2	0/1:0,176:32:176:1.00:2	0/1:107,85:32:193:0.443:2	0/1:90,84:33:174:0.483:2	0/1:4,181:32:185:0.978:2	0/1:0,174:33:174:1.00:2	0/1:0,176:33:176:1.00:2	0/1:1,171:32:173:0.994:2
chr1	110201809	rs562996	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,26:31:27:0.963:2	0/1:77,74:32:151:0.490:2	0/1:4,83:31:87:0.954:2	0/1:66,65:31:131:0.496:2	0/1:56,41:32:97:0.423:2	0/1:1,119:31:120:0.992:2	0/1:0,135:33:135:1.00:2	0/1:3,104:31:107:0.972:2	0/1:0,150:31:150:1.00:2
chr1	110201812	rs563003	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,26:32:27:0.963:2	0/1:72,74:32:146:0.507:2	0/1:4,83:32:87:0.954:2	0/1:64,65:32:129:0.504:2	0/1:55,41:33:96:0.427:2	0/1:1,118:32:119:0.992:2	0/1:0,136:34:136:1.00:2	0/1:4,103:33:107:0.963:2	0/1:0,150:33:150:1.00:2
chr1	110210780	rs530021	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,20:31:48:0.417:2	0/1:12,11:30:23:0.478:2	0/1:0,4:31:4:1.00:2	0/1:39,37:31:77:0.487:2	0/1:0,56:30:56:1.00:2	0/1:40,39:30:79:0.494:2	0/1:0,55:31:55:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,31:31:31:1.00:2
chr1	110211531	rs374179090	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.
chr1	110211933	rs2227960	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:29:110:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110211956	rs592792	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	0/1:100,58:31:158:0.367:2	./.	./.	./.	0/1:74,66:32:140:0.471:2	0/1:69,46:32:115:0.400:2	./.
chr1	110230787	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110230839	rs112778559	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr1	110231279	rs202193721	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	0/1:95,6:31:101:0.059:2	0/1:1,3:26:4:0.750:2
chr1	110231302	rs72549311	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,5:31:98:0.051:2	./.	0/1:5,3:26:8:0.375:2	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.
chr1	110231649	rs113677167	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr1	110231663	rs113846795	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr1	110231721	rs200487927	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:3,6:31:9:0.667:2	./.	./.	0/1:0,2:30:2:1.00:2
chr1	110231746	rs147668562	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,26:33:52:0.500:2	./.	0/1:3,188:32:191:0.984:2	./.	./.	./.	./.	./.	./.
chr1	110232983	rs140584594	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:34:16:0.313:2	./.	./.
chr1	110233138	rs74837985	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,2:31:2:1.00:2	0/1:154,9:32:163:0.055:2	0/1:192,5:29:197:0.025:2	0/1:181,14:30:195:0.072:2	0/1:6,30:31:36:0.833:2	0/1:3,32:32:35:0.914:2	0/1:26,80:32:106:0.755:2	0/1:3,56:32:59:0.949:2	0/1:174,21:32:196:0.108:2	0/1:3,38:32:41:0.927:2
chr1	110233147	rs1056806	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,63:31:157:0.401:2	./.	./.	./.	./.	0/1:121,15:32:136:0.110:2	./.	0/1:31,149:32:180:0.828:2	./.
chr1	110233153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110255748	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:182,8:32:190:0.042:2	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.	0/1:189,5:31:194:0.026:2
chr1	110256067	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:63,4:35:67:0.060:2	./.	./.	0/1:120,5:34:125:0.040:2	./.	./.	./.	./.	0/1:163,4:35:167:0.024:2	./.	./.
chr1	110256075	rs2479390	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,59:32:148:0.399:2	0/1:59,50:32:109:0.459:2	./.	./.	./.	0/1:91,60:32:151:0.397:2
chr1	110256127	rs17854972	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:30:19:0.579:2	0/1:97,84:30:181:0.464:2	0/1:93,93:30:186:0.500:2	0/1:182,6:29:189:0.032:2	./.	./.	0/1:182,13:31:195:0.067:2	./.	./.
chr1	110256150	rs141656810	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:126,7:29:133:0.053:2	./.	0/1:181,6:30:187:0.032:2	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	0/1:191,6:31:197:0.030:2	0/1:189,6:33:195:0.031:2
chr1	110256160	rs147739570	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:139,6:31:145:0.041:2	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	0/1:193,5:31:198:0.025:2	0/1:183,7:33:191:0.037:2
chr1	110256162	rs144839885	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	./.
chr1	110257590	rs2229059	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,11:32:23:0.478:2	0/1:94,58:33:153:0.382:2	0/1:39,20:32:59:0.339:2	./.	./.	./.	./.	./.	./.
chr1	110257659	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.
chr1	110260019	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.
chr1	110279701	rs7483	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,52:31:99:0.525:2	0/1:29,17:31:46:0.370:2	./.	./.	./.	./.	0/1:67,63:30:130:0.485:2	0/1:79,61:30:140:0.436:2	0/1:75,55:32:130:0.423:2	0/1:0,107:31:107:1.00:2	./.
chr1	110279777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,59:32:124:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr1	110295772	rs1887547	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,26:30:69:0.377:2	0/1:21,18:30:39:0.462:2	0/1:1,9:30:10:0.900:2	0/1:60,53:30:113:0.469:2	0/1:45,51:29:96:0.531:2	./.	0/1:65,59:30:124:0.476:2	0/1:0,105:29:105:1.00:2	0/1:51,40:30:91:0.440:2	0/1:0,69:30:69:1.00:2	./.
chr1	110299691	rs11102001	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,54:31:93:0.581:2	0/1:29,22:31:51:0.431:2	./.	./.	./.	./.	0/1:79,71:31:150:0.473:2	./.	./.	./.	./.
chr1	110300441	rs3818562	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:30:12:0.667:2	0/1:48,39:30:87:0.448:2	./.	./.	./.	0/1:1,93:29:94:0.989:2	0/1:51,43:29:94:0.457:2	0/1:1,78:30:79:0.987:2	./.
chr1	110300504	rs10776700	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,18:33:18:1.00:2	0/1:1,143:32:146:0.993:2	0/1:1,106:32:107:0.991:2	0/1:0,137:32:137:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,139:32:139:1.00:2
chr1	110301260	rs6693815	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,15:32:43:0.349:2	0/1:16,7:31:23:0.304:2	0/1:4,6:28:10:0.600:2	0/1:34,40:32:74:0.541:2	0/1:57,31:31:88:0.352:2	./.	0/1:41,38:32:79:0.481:2	0/1:48,40:31:88:0.455:2	./.	./.	./.
chr1	110459990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:121:0.033:2	./.	./.	./.	./.
chr1	110466338	rs333970	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,27:33:44:0.614:2	0/1:12,13:33:25:0.520:2	0/1:0,9:32:9:1.00:2	0/1:1,58:32:59:0.983:2	0/1:25,11:32:36:0.306:2	0/1:28,14:32:42:0.333:2	0/1:46,20:31:66:0.303:2	0/1:32,31:33:63:0.492:2	0/1:44,32:34:76:0.421:2	0/1:20,22:33:42:0.524:2	0/1:38,27:32:65:0.415:2
chr1	110466466	rs1058885	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,14:30:42:0.333:2	0/1:14,9:30:23:0.391:2	./.	./.	0/1:9,19:28:28:0.679:2	0/1:15,20:28:35:0.571:2	0/1:14,13:28:27:0.481:2	0/1:35,20:28:55:0.364:2	0/1:25,20:29:45:0.444:2	0/1:21,16:30:37:0.432:2	0/1:15,29:27:45:0.659:2
chr1	110466555	rs2229165	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.	./.	./.
chr1	110466709	rs333971	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,6:32:6:1.00:2	0/1:1,106:33:107:0.991:2	0/1:0,97:32:97:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,78:32:78:1.00:2
chr1	110466810	rs2229166	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.
chr1	110467745	rs333972	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,70:33:70:1.00:2
chr1	110551700	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.
chr1	110561046	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,7:24:105:0.067:2	./.	./.	./.	./.
chr1	110561048	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:31:107:0.047:2	./.	./.	./.	./.
chr1	110656011	rs12125479	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,23:31:44:0.523:2	0/1:23,17:31:40:0.425:2	./.	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2
chr1	110709719	rs7527375	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,35:30:35:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:33,12:29:45:0.267:2	./.	0/1:20,36:30:56:0.643:2	0/1:50,26:27:76:0.342:2	0/1:38,22:31:60:0.367:2	0/1:20,26:31:46:0.565:2	0/1:31,19:29:50:0.380:2	0/1:0,33:31:33:1.00:2
chr1	110709720	rs12737742	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,34:30:35:1.00:2	0/1:0,25:30:25:1.00:2	./.	./.	./.	0/1:20,36:30:56:0.643:2	./.	0/1:38,22:30:60:0.367:2	0/1:20,26:31:46:0.565:2	0/1:31,18:29:49:0.367:2	0/1:0,33:30:33:1.00:2
chr1	110709734	rs41281364	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,16:31:47:0.340:2	./.	./.	0/1:49,21:31:70:0.300:2	./.	./.	./.	./.
chr1	110717425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:29:72:0.056:2
chr1	110735276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.
chr1	110738296	rs2784140	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,77:31:162:0.475:2	0/1:62,62:30:124:0.500:2	./.	./.	./.	./.	0/1:60,61:31:121:0.504:2
chr1	110740931	rs6685009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110766215	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr1	110766454	rs59123361	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,18:31:53:0.340:2	./.	./.	./.	./.	0/1:20,26:33:46:0.565:2	./.	./.
chr1	110882444	rs814771	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,15:32:24:0.625:2	0/1:11,8:31:19:0.421:2	./.	0/1:7,15:31:22:0.682:2	0/1:15,18:30:33:0.545:2	0/1:0,20:29:20:1.00:2	0/1:6,16:27:22:0.727:2	./.	0/1:15,12:31:27:0.444:2	0/1:16,13:32:29:0.448:2	0/1:12,15:31:27:0.556:2
chr1	110883176	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:29:81:0.049:2
chr1	110883569	rs3738752	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,17:33:32:0.531:2	0/1:15,7:32:22:0.318:2	0/1:5,5:33:10:0.500:2	./.	0/1:29,27:32:56:0.482:2	./.	./.	./.	./.	./.	./.
chr1	110884693	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.
chr1	110919678	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr1	110924353	rs3738750	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:106,75:32:181:0.414:2	0/1:49,52:32:101:0.515:2	0/1:20,10:32:30:0.333:2	./.	0/1:77,39:32:116:0.336:2	./.	./.	./.	./.	./.	./.
chr1	110925550	rs35653868	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110950277	rs6698159	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,106:32:194:0.546:2	./.	./.	./.
chr1	110950439	rs6674775	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,67:30:134:0.500:2	0/1:69,73:30:142:0.514:2	0/1:58,70:30:128:0.547:2	./.	0/1:62,41:30:103:0.398:2	0/1:51,53:30:104:0.510:2
chr1	110950462	rs11102099	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,53:31:94:0.564:2	./.	./.	./.	./.	0/1:49,54:31:103:0.524:2	./.	./.
chr1	110998854	rs7514102	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,7:32:13:0.538:2	0/1:4,5:26:9:0.556:2	0/1:1,3:31:4:0.750:2	0/1:12,7:31:19:0.368:2	0/1:24,9:29:33:0.273:2	./.	./.	0/1:16,18:31:34:0.529:2	0/1:5,8:33:13:0.615:2	./.	0/1:14,10:30:24:0.417:2
chr1	111060669	rs1281175	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,35:32:74:0.473:2	0/1:27,27:33:54:0.500:2	0/1:1,9:33:10:0.900:2	0/1:80,40:32:120:0.333:2	0/1:48,62:32:110:0.564:2	0/1:59,53:32:112:0.473:2	0/1:3,143:33:146:0.979:2	0/1:92,58:32:150:0.387:2	./.	0/1:58,38:34:96:0.396:2	0/1:0,102:33:102:1.00:2
chr1	111060752	rs34970857	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,58:32:116:0.500:2	0/1:39,24:32:63:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	111061062	rs1281174	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,7:32:18:0.389:2	0/1:9,7:32:16:0.438:2	0/1:0,2:36:2:1.00:2	0/1:15,7:32:22:0.318:2	0/1:3,12:32:15:0.800:2	0/1:4,11:32:15:0.733:2	0/1:0,13:33:13:1.00:2	0/1:19,10:32:29:0.345:2	./.	./.	0/1:0,13:34:13:1.00:2
chr1	111061549	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:34:186:0.022:2
chr1	111061653	rs3768456	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,68:32:154:0.442:2	0/1:52,40:32:92:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	111145990	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,16:32:118:0.136:2	./.
chr1	111216638	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,21:8:86:0.244:2	./.	./.	./.	./.	./.
chr1	111441829	rs1803259	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,2:30:2:1.00:2	0/1:20,23:31:43:0.535:2	0/1:21,5:31:26:0.192:2	0/1:26,22:31:48:0.458:2	0/1:0,31:32:31:1.00:2	0/1:44,17:32:61:0.279:2	0/1:0,51:33:51:1.00:2	0/1:0,29:32:29:1.00:2	./.
chr1	111494194	rs2232041	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,43:31:94:0.457:2	0/1:28,26:31:54:0.481:2	0/1:7,3:32:10:0.300:2	./.	0/1:30,18:30:48:0.375:2	./.	./.	./.	0/1:57,42:32:99:0.424:2	0/1:38,31:31:69:0.449:2	./.
chr1	111662499	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:33:42:0.452:2	./.	./.
chr1	111726838	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2
chr1	111726869	rs3795823	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:32:23:0.435:2	0/1:82,89:31:171:0.520:2	0/1:1,103:31:104:0.990:2	0/1:87,66:31:153:0.431:2	0/1:85,75:31:160:0.469:2	./.	./.	./.	0/1:83,85:31:168:0.506:2
chr1	111730901	rs608881	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,47:32:116:0.405:2	0/1:1,136:33:137:0.993:2	0/1:59,46:32:105:0.438:2	./.
chr1	111731318	rs78859767	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,82:30:179:0.458:2	0/1:72,66:30:138:0.478:2	./.	./.	./.	./.	./.	./.
chr1	111731352	rs61756276	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,57:32:146:0.390:2	./.
chr1	111739812	rs151104089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:30:38:0.526:2	./.	./.	./.	./.	./.
chr1	111741322	rs35184750	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,26:30:62:0.419:2	./.	./.	./.	./.	./.	./.
chr1	111777575	rs35041930	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,32:32:96:0.333:2	./.
chr1	111778325	rs11556868	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	0/1:70,45:31:115:0.391:2	0/1:0,102:32:102:1.00:2	./.	./.
chr1	111778328	rs151245802	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.
chr1	111783982	rs13721	C	T,A	.	PASS	AC=2,4;AF=0.111,0.222;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0/2:31:59:0.492:2	0/2:32:31:0.452:2	0/2:33:7:0.429:2	./.	0/1:30:61:0.967:2	./.	0/2:31:60:0.983:2	0/1:31:70:0.614:2	./.	./.	./.
chr1	111783996	rs2494007	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,9:34:9:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,55:34:55:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,55:33:55:1.00:2
chr1	111833517	rs12026825	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,6:31:11:0.545:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,10:31:10:1.00:2	0/1:8,3:31:11:0.273:2	./.	0/1:7,9:32:16:0.563:2	./.	0/1:3,6:32:9:0.667:2	./.	./.
chr1	111854889	rs41282492	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,78:30:157:0.497:2	./.	0/1:54,52:30:106:0.491:2	0/1:54,56:30:110:0.509:2	0/1:45,39:29:84:0.464:2
chr1	111854895	rs41282494	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,68:30:146:0.469:2	./.	0/1:50,52:30:102:0.510:2	0/1:52,60:30:112:0.536:2	0/1:45,35:30:80:0.438:2
chr1	111854938	rs41282496	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,60:32:144:0.417:2	./.	0/1:52,38:32:90:0.422:2	0/1:46,60:32:106:0.566:2	0/1:53,38:32:91:0.418:2
chr1	111857154	rs2786152	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,20:33:46:0.435:2	0/1:11,7:32:18:0.389:2	./.	0/1:2,51:33:53:0.962:2	0/1:1,23:32:24:0.958:2	0/1:0,30:32:30:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,25:33:25:1.00:2	0/1:22,14:33:36:0.389:2	0/1:18,11:34:29:0.379:2	0/1:0,64:32:64:1.00:2
chr1	111857208	rs3818822	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:32:66:0.545:2	./.	./.	./.	./.	./.
chr1	111857951	rs61756687	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,43:32:77:0.558:2	./.	./.	./.	./.	./.	./.
chr1	111860707	rs143960572	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,5:31:106:0.047:2	./.	./.	0/1:55,5:31:60:0.083:2	0/1:88,6:33:94:0.064:2
chr1	111860723	rs151297358	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:30:87:0.057:2	./.	./.	0/1:41,8:30:49:0.163:2	0/1:58,7:29:65:0.108:2
chr1	111861822	rs17027410	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,58:30:137:0.423:2	./.	0/1:71,65:30:136:0.478:2	0/1:62,63:31:125:0.504:2	0/1:86,71:30:157:0.452:2
chr1	111861841	rs2275253	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,52:29:112:0.464:2	0/1:27,27:30:55:0.500:2	./.	0/1:0,127:29:127:1.00:2	0/1:0,134:29:134:1.00:2	0/1:0,142:29:142:1.00:2	0/1:4,116:30:120:0.967:2	0/1:1,144:30:145:0.993:2	0/1:69,58:30:127:0.457:2	0/1:54,50:30:104:0.481:2	0/1:0,122:29:123:1.00:2
chr1	111861974	rs2275254	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,43:33:97:0.443:2	0/1:33,22:33:55:0.400:2	./.	0/1:1,124:32:125:0.992:2	0/1:0,95:32:95:1.00:2	0/1:67,44:32:111:0.396:2	0/1:1,75:33:76:0.987:2	0/1:1,110:33:111:0.991:2	0/1:70,49:33:119:0.412:2	0/1:36,47:33:83:0.566:2	0/1:0,108:34:108:1.00:2
chr1	111862042	rs36011905	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,36:33:112:0.321:2	./.	./.
chr1	111862074	rs2820092	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,43:31:91:0.473:2	./.	./.	./.	./.	./.
chr1	111862078	rs12094378	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:32:61:0.410:2	./.	0/1:63,21:32:84:0.250:2	0/1:47,26:31:73:0.356:2	0/1:54,30:31:84:0.357:2
chr1	111862952	rs2256721	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,34:31:73:0.466:2	0/1:32,24:32:56:0.429:2	./.	0/1:0,101:32:101:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,106:31:106:1.00:2	0/1:1,91:32:92:0.989:2	0/1:0,122:32:122:1.00:2	0/1:45,44:33:89:0.494:2	0/1:41,23:31:64:0.359:2	0/1:0,84:32:84:1.00:2
chr1	111891192	rs2184884	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,32:31:88:0.364:2	./.	0/1:81,36:31:117:0.308:2	0/1:49,26:31:75:0.347:2	0/1:91,56:31:147:0.381:2
chr1	111893958	rs1668	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,35:33:67:0.522:2	0/1:29,33:33:62:0.532:2	./.	0/1:0,120:33:120:1.00:2	0/1:61,45:32:106:0.425:2	./.	0/1:62,44:32:106:0.415:2	./.	0/1:71,51:33:123:0.418:2	0/1:55,41:32:96:0.427:2	0/1:0,97:32:97:1.00:2
chr1	111957097	rs7825	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,15:33:33:0.455:2	0/1:13,3:33:16:0.188:2	./.	0/1:0,17:33:17:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,24:33:24:1.00:2	0/1:15,10:33:25:0.400:2	0/1:11,5:32:16:0.313:2	./.	0/1:8,7:33:15:0.467:2	./.
chr1	111957188	rs188280606	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	111957245	rs9629	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,48:32:80:0.600:2	0/1:34,26:31:60:0.433:2	./.	0/1:49,52:32:101:0.515:2	0/1:33,37:32:70:0.529:2	0/1:37,46:32:83:0.554:2	0/1:48,30:33:78:0.385:2	./.	./.	0/1:47,37:33:84:0.440:2	./.
chr1	111957311	rs10067	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,40:32:107:0.374:2	0/1:28,36:33:64:0.563:2	./.	./.	0/1:42,46:33:88:0.523:2	./.	./.	./.
chr1	111957517	rs3767609	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,4:33:39:0.103:2	0/1:21,10:33:31:0.323:2	./.	0/1:19,11:31:30:0.367:2	0/1:37,6:32:43:0.140:2	0/1:0,18:32:18:1.00:2	0/1:21,8:32:29:0.276:2	./.	./.	0/1:40,3:33:43:0.070:2	./.
chr1	111957525	rs61742558	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.
chr1	111957570	rs45455292	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,13:32:52:0.250:2	./.	./.	0/1:22,6:33:28:0.214:2	./.	0/1:20,10:30:30:0.333:2	0/1:16,8:31:24:0.333:2	./.	./.	0/1:30,4:32:34:0.118:2	./.
chr1	111957583	rs1126656	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,18:33:57:0.316:2	0/1:28,3:33:31:0.097:2	./.	0/1:21,9:29:30:0.300:2	0/1:14,5:34:19:0.263:2	0/1:24,15:31:39:0.385:2	0/1:16,16:32:32:0.500:2	./.	./.	0/1:28,6:31:34:0.176:2	./.
chr1	111957592	rs56294468	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,23:33:62:0.371:2	0/1:30,5:33:35:0.143:2	./.	0/1:20,11:31:31:0.355:2	0/1:16,9:31:25:0.360:2	0/1:25,19:31:44:0.432:2	0/1:20,17:32:38:0.459:2	./.	./.	0/1:28,7:32:35:0.200:2	./.
chr1	111957693	rs2485319	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,38:29:87:0.437:2	0/1:31,24:28:55:0.436:2	0/1:0,23:28:23:1.00:2	0/1:0,117:29:117:1.00:2	0/1:1,114:29:115:0.991:2	0/1:0,170:29:170:1.00:2	0/1:66,70:28:136:0.515:2	0/1:87,77:28:164:0.470:2	./.	0/1:70,57:29:127:0.449:2	./.
chr1	111957848	rs372572309	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	111966291	rs954739	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,41:31:109:0.376:2	0/1:36,22:31:58:0.379:2	0/1:62,38:31:100:0.380:2	0/1:63,25:31:88:0.284:2	./.	./.	0/1:49,37:31:86:0.430:2	./.
chr1	111968024	rs75085433	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,6:20:75:0.080:2	./.	./.	./.	./.	0/1:100,7:20:107:0.065:2	./.	./.	./.	0/1:88,7:20:96:0.074:2	0/1:84,7:20:91:0.077:2
chr1	111969719	rs1264894	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,12:33:13:0.923:2	0/1:0,102:32:102:1.00:2	0/1:0,108:32:108:1.00:2	0/1:1,110:32:111:0.991:2	0/1:70,46:32:116:0.397:2	0/1:68,40:32:108:0.370:2	./.	0/1:58,40:33:98:0.408:2	./.
chr1	111998734	rs151112830	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2
chr1	112003608	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.
chr1	112018657	rs6703267	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,37:32:87:0.425:2	0/1:36,26:31:62:0.419:2	0/1:38,39:32:77:0.506:2	0/1:40,37:32:77:0.481:2	./.	./.	0/1:37,26:32:63:0.413:2	./.
chr1	112029193	rs2252739	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:27:32:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,47:27:47:1.00:2	0/1:0,51:27:51:1.00:2	0/1:27,14:28:41:0.341:2	0/1:0,43:28:43:1.00:2	0/1:46,18:27:64:0.281:2	0/1:0,62:29:62:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,54:27:54:1.00:2
chr1	112031432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,7:33:199:0.035:2	./.
chr1	112033285	rs2275797	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:31:22:0.364:2	./.	./.	0/1:16,6:33:22:0.273:2	./.	./.	./.	./.
chr1	112042632	rs2229155	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:33:106:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,13:33:13:1.00:2	0/1:2,127:33:129:0.984:2	0/1:2,80:32:82:0.976:2	0/1:49,59:32:108:0.546:2	0/1:0,96:32:96:1.00:2	0/1:59,47:33:106:0.443:2	0/1:0,107:33:107:1.00:2	0/1:1,99:32:100:0.990:2	0/1:0,145:33:145:1.00:2
chr1	112042787	rs35511654	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,46:33:117:0.393:2	./.	./.	0/1:69,52:32:121:0.430:2	./.	./.	./.	./.
chr1	112269740	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.
chr1	112269872	rs197434	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,49:30:49:1.00:2	0/1:1,32:31:33:0.970:2	0/1:0,27:29:27:1.00:2	0/1:0,49:30:49:1.00:2	0/1:2,41:31:43:0.953:2	0/1:0,32:32:32:1.00:2	0/1:15,20:32:35:0.571:2	0/1:0,38:30:38:1.00:2
chr1	112298378	rs28372703	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,41:33:106:0.387:2	0/1:60,48:34:108:0.444:2	0/1:37,38:34:75:0.507:2	./.
chr1	112298582	rs197392	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:31:21:0.429:2	./.	0/1:58,61:29:119:0.513:2	./.	0/1:63,42:29:105:0.400:2	./.	0/1:82,45:31:127:0.354:2	./.	./.
chr1	112308953	rs197412	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,14:33:40:0.350:2	0/1:14,5:32:19:0.263:2	0/1:2,2:34:4:0.500:2	./.	0/1:16,9:31:25:0.360:2	./.	0/1:25,12:30:37:0.324:2	0/1:16,9:33:25:0.360:2	0/1:0,29:33:29:1.00:2	0/1:24,17:31:41:0.415:2	0/1:31,22:33:54:0.415:2
chr1	112308972	rs197413	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,12:31:41:0.293:2	0/1:16,5:32:21:0.238:2	./.	./.	0/1:17,10:29:27:0.370:2	./.	0/1:21,11:27:32:0.344:2	0/1:21,14:30:35:0.400:2	0/1:0,34:31:34:1.00:2	0/1:28,21:30:49:0.429:2	0/1:32,19:31:51:0.373:2
chr1	112309123	rs197414	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:30:70:0.486:2	./.	./.	./.	./.
chr1	112309331	rs85276	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.	./.	./.	./.
chr1	112525085	rs17221819	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,42:33:74:0.568:2	0/1:36,26:32:62:0.419:2	0/1:6,4:31:10:0.400:2	./.	0/1:1,175:32:176:0.994:2	./.	./.	0/1:98,88:32:186:0.473:2	./.	./.	./.
chr1	112991698	rs2256883	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,23:32:54:0.426:2	0/1:11,11:31:22:0.500:2	./.	0/1:36,32:32:68:0.471:2	0/1:43,34:31:77:0.442:2	0/1:1,67:32:68:0.985:2	0/1:0,83:32:83:1.00:2	0/1:37,31:32:68:0.456:2	0/1:33,40:33:73:0.548:2	0/1:25,20:32:45:0.444:2	0/1:0,56:32:56:1.00:2
chr1	112999227	rs1175641	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,16:33:16:1.00:2	./.	0/1:1,27:31:28:0.964:2	0/1:0,13:32:13:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,30:32:30:1.00:2
chr1	112999339	rs12137578	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,34:30:89:0.382:2	./.	./.
chr1	113057601	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:29:108:0.037:2	./.	./.	./.	./.	./.
chr1	113063125	rs910697	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:43,35:31:78:0.449:2	0/1:50,49:30:99:0.495:2	./.	0/1:1,89:31:90:0.989:2	./.	0/1:1,81:32:82:0.988:2	0/1:53,24:31:77:0.312:2	./.
chr1	113068713	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113084611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.
chr1	113098534	rs6658555	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:32:57:0.421:2	./.	0/1:44,40:33:84:0.476:2	./.	./.
chr1	113143420	rs116580400	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,36:33:69:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr1	113159464	rs114199731	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,49:31:141:0.348:2	./.	./.	./.
chr1	113196207	rs201469893	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113197136	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.
chr1	113197203	rs3790599	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113212751	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2
chr1	113236681	rs3748656	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:30:16:0.625:2	0/1:67,51:28:118:0.432:2	0/1:56,42:28:98:0.429:2	./.	0/1:49,49:28:98:0.500:2	./.	0/1:69,57:29:126:0.452:2	0/1:55,39:29:95:0.415:2	./.
chr1	113237171	rs883593	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,21:29:48:0.438:2	0/1:39,15:27:54:0.278:2	./.	0/1:19,14:29:33:0.424:2	./.	0/1:34,22:31:56:0.393:2	0/1:22,22:29:44:0.500:2	./.
chr1	113239382	rs17030651	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:28:11:0.545:2	0/1:44,34:30:78:0.436:2	0/1:54,47:31:101:0.465:2	./.	0/1:48,51:31:99:0.515:2	./.	0/1:43,35:32:78:0.449:2	0/1:27,33:30:60:0.550:2	./.
chr1	113241052	rs2306940	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:32:6:0.500:2	0/1:31,20:31:51:0.392:2	0/1:28,15:30:43:0.349:2	./.	0/1:23,27:32:50:0.540:2	./.	0/1:20,18:31:38:0.474:2	0/1:16,12:31:28:0.429:2	./.
chr1	113243048	rs6679	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:29:16:0.500:2	0/1:55,59:30:114:0.518:2	0/1:48,63:30:111:0.568:2	./.	0/1:110,65:31:175:0.371:2	./.	0/1:76,53:32:129:0.411:2	0/1:56,49:31:105:0.467:2	./.
chr1	113255389	rs10857971	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,84:31:84:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,65:33:65:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,51:31:51:1.00:2
chr1	113255456	rs34611728	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,9:31:12:0.750:2	0/1:36,27:31:63:0.429:2	0/1:24,25:31:49:0.510:2	./.	./.	./.	./.	./.	./.
chr1	113257714	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113264930	rs35995150	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:31:15:0.400:2	0/1:44,37:28:81:0.457:2	0/1:30,35:30:65:0.538:2	./.	./.	./.	./.	./.	./.
chr1	113456546	rs1049434	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,83:33:196:0.423:2	0/1:78,82:33:160:0.513:2	0/1:20,18:32:38:0.474:2	0/1:2,194:33:196:0.990:2	./.	./.	0/1:111,85:32:196:0.434:2	0/1:102,93:32:195:0.477:2	0/1:0,195:33:195:1.00:2	0/1:0,190:32:191:1.00:2	0/1:103,93:33:196:0.474:2
chr1	113650330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr1	113655206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,6:28:122:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113657092	rs1216793	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,27:28:27:1.00:2
chr1	113657239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.	./.
chr1	113661973	rs143661098	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,56:29:116:0.483:2
chr1	113666676	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.
chr1	113666691	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.
chr1	114162422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2
chr1	114184838	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.	./.	./.
chr1	114196481	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.
chr1	114196495	rs2359173	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,20:29:47:0.426:2	0/1:20,10:27:30:0.333:2	0/1:9,3:27:12:0.250:2	./.	0/1:19,23:29:42:0.548:2	./.	0/1:33,16:29:49:0.327:2	0/1:2,64:28:66:0.970:2	0/1:22,29:29:51:0.569:2	0/1:18,34:28:52:0.654:2	0/1:30,25:27:55:0.455:2
chr1	114196614	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.	./.
chr1	114226143	rs61742849	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,53:32:112:0.473:2	0/1:36,12:31:48:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	114249231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr1	114301263	rs113778197	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,10:31:52:0.196:2	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	114301335	rs61817589	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:91,68:33:159:0.428:2	0/1:39,35:32:74:0.473:2	./.	./.	./.	./.	0/1:105,88:32:193:0.456:2	./.	./.	0/1:108,87:32:195:0.446:2	0/1:105,80:33:185:0.432:2
chr1	114310859	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.
chr1	114354654	rs3195954	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:25:12:0.417:2	./.	0/1:0,8:30:8:1.00:2	./.	./.	./.	./.	./.
chr1	114354942	rs3789604	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.
chr1	114377568	rs2476601	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:30:157:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,21:30:21:1.00:2	0/1:2,155:30:157:0.987:2	0/1:0,103:30:103:1.00:2	0/1:0,161:30:161:1.00:2	0/1:84,61:30:147:0.421:2	0/1:0,135:30:135:1.00:2	0/1:0,155:31:155:1.00:2	0/1:1,140:30:141:0.993:2	0/1:65,81:30:146:0.555:2
chr1	114380508	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.
chr1	114397647	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.
chr1	114424601	rs1217381	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,101:31:101:1.00:2	./.	0/1:0,60:31:60:1.00:2	0/1:0,81:31:81:1.00:2
chr1	114438951	rs1217401	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:31:12:0.250:2	0/1:61,42:29:103:0.408:2	0/1:49,26:30:75:0.347:2	./.	./.	./.	0/1:71,44:30:115:0.383:2	./.	./.
chr1	114443899	rs17464525	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,95:30:193:0.492:2	./.	0/1:104,81:30:186:0.438:2	./.	./.	./.	./.	./.
chr1	114448389	rs11552449	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,22:30:43:0.512:2	0/1:10,16:31:26:0.615:2	0/1:0,3:28:3:1.00:2	./.	./.	./.	0/1:22,18:28:40:0.450:2	./.	./.	./.	0/1:24,16:30:40:0.400:2
chr1	114449662	rs3761936	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:96,64:30:160:0.400:2	0/1:48,41:29:89:0.461:2	0/1:10,14:30:24:0.583:2	./.	./.	./.	0/1:76,87:30:163:0.534:2	0/1:175,5:31:180:0.028:2	./.	./.	0/1:84,79:29:163:0.485:2
chr1	114500823	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:34:130:0.031:2	./.	./.
chr1	114505000	rs17852555	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,70:31:72:0.972:2	./.	0/1:46,30:31:76:0.395:2	0/1:45,22:32:67:0.328:2	./.	0/1:50,41:33:91:0.451:2	./.	0/1:54,37:32:92:0.407:2
chr1	114508757	rs35061908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:33:72:0.486:2	./.	./.
chr1	114515717	rs2358996	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:16,19:31:35:0.543:2	0/1:7,18:32:25:0.720:2	0/1:2,3:31:5:0.600:2	./.	./.	0/1:27,25:28:52:0.481:2	0/1:17,21:31:38:0.553:2	./.	./.	0/1:0,36:30:36:1.00:2	0/1:12,21:30:33:0.636:2
chr1	114516035	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,74:32:150:0.493:2	./.	./.	./.	./.	./.
chr1	114523624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:29:164:0.030:2	./.	./.
chr1	114680310	rs41274114	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,68:31:178:0.382:2	./.	./.	./.	0/1:104,84:31:188:0.447:2	0/1:99,65:32:164:0.396:2	./.	./.
chr1	114680337	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.
chr1	114680540	rs17032441	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,91:32:191:0.476:2	./.	./.	0/1:109,84:32:193:0.435:2	./.	0/1:88,100:33:188:0.532:2	0/1:107,79:32:186:0.425:2	./.
chr1	114948281	rs6537825	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,166:32:167:0.994:2	0/1:0,118:32:118:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,178:33:178:1.00:2	0/1:102,93:32:195:0.477:2	0/1:0,192:32:192:1.00:2	0/1:1,180:32:181:0.994:2	0/1:83,106:32:189:0.561:2	0/1:0,187:34:187:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,176:32:176:1.00:2
chr1	114963084	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,8:17:60:0.133:2	./.	./.	./.	./.	./.
chr1	114973429	rs12083584	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,32:32:81:0.395:2	0/1:16,23:32:39:0.590:2	./.	0/1:44,30:33:74:0.405:2	./.	./.	0/1:23,13:32:36:0.361:2	0/1:38,28:33:66:0.424:2	./.	0/1:39,22:33:61:0.361:2	./.
chr1	115119392	rs41274118	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:15,7:32:22:0.318:2	0/1:8,12:31:20:0.600:2	./.	0/1:20,7:33:27:0.259:2	0/1:20,25:33:45:0.556:2	./.	./.
chr1	115130353	rs61000990	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:32:41:0.561:2
chr1	115164554	rs56861557	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:31:82:0.488:2
chr1	115168097	rs12136548	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,39:33:76:0.513:2	./.	./.	./.	./.	0/1:40,32:32:72:0.444:2	./.	0/1:59,64:32:123:0.520:2
chr1	115168190	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.
chr1	115168600	rs7541738	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,21:32:21:1.00:2	0/1:2,4:33:6:0.667:2	0/1:26,19:31:45:0.422:2	0/1:20,13:31:33:0.394:2	0/1:11,14:31:25:0.560:2	0/1:2,37:31:40:0.949:2	0/1:20,13:31:33:0.394:2	./.	0/1:0,20:33:20:1.00:2	./.
chr1	115216290	rs370342388	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2
chr1	115217455	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.	./.
chr1	115231254	rs61752479	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:84,67:33:151:0.444:2	./.	0/1:73,76:32:149:0.510:2	./.	0/1:99,86:32:185:0.465:2	0/1:79,92:34:171:0.538:2	./.	./.
chr1	115236057	rs17602729	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:32:22:0.455:2	0/1:121,72:31:193:0.373:2	./.	0/1:98,69:31:167:0.413:2	./.	0/1:88,74:32:162:0.457:2	0/1:115,76:33:191:0.398:2	./.	./.
chr1	115260778	rs183844328	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,32:33:61:0.525:2	./.	./.	./.	./.	./.	./.
chr1	115282484	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:27:28:0.286:2	./.	./.	./.	./.	./.	./.
chr1	115488970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:30:200:0.025:2	./.
chr1	115576023	rs10776792	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:33:163:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,191:33:191:1.00:2	./.	0/1:0,194:32:194:1.00:2	0/1:0,188:33:188:1.00:2	0/1:0,192:33:192:1.00:2	0/1:0,180:34:180:1.00:2	0/1:0,178:33:178:1.00:2	0/1:0,188:33:188:1.00:2
chr1	115604798	rs10776795	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:54,67:30:121:0.554:2	0/1:72,55:29:127:0.433:2	0/1:0,96:30:96:1.00:2	0/1:64,73:31:137:0.533:2	0/1:2,122:30:124:0.984:2	0/1:0,89:31:89:1.00:2	./.	./.
chr1	115829313	rs6330	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,40:30:76:0.526:2	0/1:21,22:31:43:0.512:2	./.	0/1:0,92:30:92:1.00:2	0/1:60,45:30:107:0.429:2	0/1:43,59:30:102:0.578:2	0/1:3,127:31:130:0.977:2	0/1:57,70:30:127:0.551:2	./.	0/1:52,39:29:91:0.429:2	./.
chr1	116206423	rs4839469	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:78,55:30:136:0.414:2	0/1:49,42:31:92:0.462:2	./.	./.	0/1:65,88:30:154:0.575:2	./.	./.	./.	./.	./.	0/1:3,147:31:151:0.980:2
chr1	116226631	rs74117015	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,10:17:164:0.061:2	./.	./.	./.	./.
chr1	116243877	rs7413162	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:100,81:32:181:0.448:2	0/1:80,74:32:154:0.481:2	0/1:1,31:31:32:0.969:2	./.	0/1:91,79:31:171:0.465:2	./.	0/1:2,179:32:181:0.989:2	0/1:100,75:32:175:0.429:2	0/1:1,154:32:155:0.994:2	./.	0/1:87,68:33:155:0.439:2
chr1	116260532	rs2997741	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,41:31:41:1.00:2	0/1:23,17:31:40:0.425:2	0/1:40,21:31:61:0.344:2	0/1:0,28:32:28:1.00:2	0/1:34,21:32:55:0.382:2	0/1:0,60:33:60:1.00:2	0/1:27,11:31:38:0.289:2	0/1:0,48:32:48:1.00:2
chr1	116310967	rs4074536	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,12:29:28:0.429:2	0/1:0,146:30:146:1.00:2	./.	0/1:77,65:29:142:0.458:2	0/1:100,82:30:182:0.451:2	./.	0/1:79,74:31:153:0.484:2	0/1:77,69:29:146:0.473:2	0/1:102,81:28:183:0.443:2
chr1	116381612	rs141298401	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:31:20:0.400:2	./.
chr1	116381886	rs41267509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,18:30:35:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr1	116382159	rs117907646	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,10:32:28:0.357:2	./.	./.	./.	./.	./.	./.
chr1	116382318	rs883555	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,6:29:6:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,2:28:2:1.00:2	./.
chr1	116382511	rs2797191	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,12:32:12:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,24:32:24:1.00:2
chr1	116382778	rs2811568	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,18:33:18:1.00:2	0/1:1,18:33:19:0.947:2	0/1:0,22:32:22:1.00:2
chr1	116383281	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,5:30:63:0.079:2	0/1:47,6:24:53:0.113:2	./.	./.	./.	./.	./.	./.
chr1	116383283	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,5:24:64:0.078:2	0/1:45,6:22:51:0.118:2	./.	./.	./.	./.	./.	./.
chr1	116383300	rs2811569	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,22:30:23:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,54:33:54:1.00:2
chr1	116383333	rs4839047	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:24:9:0.333:2	./.	./.	./.	0/1:4,11:31:15:0.733:2	0/1:20,17:30:37:0.459:2	0/1:0,40:31:40:1.00:2	0/1:18,22:29:40:0.550:2	./.
chr1	116383719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.
chr1	116384090	rs1418664	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,38:31:38:1.00:2	0/1:18,9:32:27:0.333:2	0/1:0,27:31:27:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,43:32:43:1.00:2	0/1:29,27:32:56:0.482:2
chr1	116384514	rs143983859	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,54:30:144:0.375:2	./.	./.	./.
chr1	116384580	rs2797208	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:31:14:0.214:2	0/1:53,83:31:136:0.610:2	./.	./.	0/1:86,69:32:155:0.445:2	0/1:83,59:31:142:0.415:2	0/1:1,123:32:124:0.992:2	0/1:60,55:31:115:0.478:2	./.
chr1	116384773	rs12403667	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,22:28:52:0.423:2	0/1:24,16:28:40:0.400:2	0/1:0,58:28:58:1.00:2	0/1:17,29:29:46:0.630:2	0/1:23,19:28:42:0.452:2	./.	0/1:23,18:27:41:0.439:2	0/1:28,35:28:63:0.556:2
chr1	116385122	rs2811570	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:29:14:0.357:2	0/1:46,43:29:89:0.483:2	./.	./.	0/1:35,24:28:59:0.407:2	0/1:57,72:28:129:0.558:2	0/1:0,87:29:87:1.00:2	0/1:50,42:29:92:0.457:2	./.
chr1	116385171	rs10923606	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:27:10:0.500:2	0/1:40,47:28:87:0.540:2	0/1:44,30:28:74:0.405:2	0/1:0,102:28:103:1.00:2	0/1:28,27:30:55:0.491:2	0/1:74,33:29:107:0.308:2	./.	0/1:41,35:29:76:0.461:2	0/1:52,63:29:115:0.548:2
chr1	116385288	rs2811571	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,28:30:65:0.431:2	./.	./.	0/1:25,28:30:53:0.528:2	0/1:21,18:29:39:0.462:2	0/1:2,61:30:63:0.968:2	0/1:29,19:30:48:0.396:2	./.
chr1	116385309	rs10923609	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:32,37:30:69:0.536:2	0/1:18,21:30:39:0.538:2	0/1:0,53:30:53:1.00:2	0/1:37,26:29:63:0.413:2	0/1:30,28:30:58:0.483:2	./.	0/1:26,29:31:55:0.527:2	0/1:36,31:31:67:0.463:2
chr1	116385467	rs2811572	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,9:30:30:0.300:2	0/1:105,82:30:187:0.439:2	./.	./.	0/1:117,69:29:186:0.371:2	0/1:99,88:30:187:0.471:2	0/1:0,178:31:178:1.00:2	0/1:79,84:30:163:0.515:2	./.
chr1	116385817	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	116386011	rs7556479	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,21:28:53:0.396:2	./.	./.	./.	./.	./.	./.
chr1	116386105	rs7556581	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:31:21:0.333:2	0/1:9,5:30:14:0.357:2	0/1:0,15:32:15:1.00:2	0/1:5,18:32:23:0.783:2	./.
chr1	116386139	rs2811573	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,15:30:15:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,28:31:28:1.00:2
chr1	116386243	rs7520643	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:28:12:0.583:2	./.	./.	./.	0/1:11,16:31:27:0.593:2	0/1:19,9:30:28:0.321:2	0/1:0,47:31:47:1.00:2	0/1:27,26:32:53:0.491:2	./.
chr1	116386244	rs61801670	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:26,28:32:54:0.519:2	0/1:8,16:32:24:0.667:2	0/1:0,56:32:56:1.00:2	0/1:18,11:33:29:0.379:2	0/1:9,19:33:28:0.679:2	./.	0/1:28,27:32:55:0.491:2	0/1:38,37:32:75:0.493:2
chr1	116534852	rs4046190	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,90:30:92:0.978:2	0/1:0,46:31:46:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,76:29:76:1.00:2	0/1:2,105:30:107:0.981:2	0/1:57,42:29:99:0.424:2	0/1:70,59:30:129:0.457:2	0/1:4,95:30:99:0.960:2	./.	0/1:0,73:29:73:1.00:2	0/1:0,75:29:75:1.00:2
chr1	116569530	rs2488429	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:32:134:1.00:2	0/1:1,90:33:91:0.989:2	0/1:0,17:33:17:1.00:2	0/1:2,158:33:160:0.988:2	0/1:0,121:32:121:1.00:2	0/1:0,175:32:175:1.00:2	0/1:0,152:32:152:1.00:2	0/1:4,181:33:185:0.978:2	0/1:0,159:33:159:1.00:2	0/1:1,166:33:167:0.994:2	0/1:0,155:32:155:1.00:2
chr1	116605448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2	./.
chr1	116916105	rs191795671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,52:30:89:0.584:2	./.	./.	./.	./.
chr1	116926643	rs146195513	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.
chr1	116932921	rs11540956	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,58:31:122:0.475:2	0/1:43,43:32:86:0.500:2	./.	./.	./.	./.
chr1	116947084	rs1802716	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,44:31:85:0.518:2	./.	./.	./.	./.	./.
chr1	116948712	rs850610	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,25:33:42:0.595:2	0/1:11,16:32:27:0.593:2	0/1:8,3:32:11:0.273:2	0/1:2,52:32:54:0.963:2	./.	0/1:30,22:32:52:0.423:2	0/1:31,34:32:65:0.523:2	0/1:4,56:32:60:0.933:2	0/1:26,24:33:50:0.480:2	0/1:21,18:30:39:0.462:2	0/1:0,56:32:56:1.00:2
chr1	116952787	rs1885802	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,37:30:97:0.381:2	0/1:58,39:29:97:0.402:2	./.	./.	./.	./.
chr1	117078698	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:32:64:0.469:2	./.
chr1	117122130	rs6703791	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:29:111:0.468:2	0/1:61,44:29:105:0.419:2	0/1:56,58:29:114:0.509:2	./.	0/1:22,26:27:48:0.542:2	./.
chr1	117122285	rs114915440	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,36:31:78:0.462:2	./.	./.	./.	./.	./.	./.
chr1	117122288	rs56982445	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:33:5:0.600:2	0/1:35,22:31:57:0.386:2	0/1:41,38:31:79:0.481:2	./.	0/1:34,33:32:68:0.493:2	./.	./.	./.	./.
chr1	117131352	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,17:28:186:0.091:2	./.	./.	./.	./.	./.	./.
chr1	117131400	rs4081622	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,22:28:148:0.150:2	0/1:89,21:28:110:0.191:2	0/1:125,22:29:147:0.150:2	0/1:100,21:28:121:0.174:2	0/1:125,9:28:134:0.067:2	0/1:114,23:28:139:0.168:2	0/1:109,22:28:132:0.168:2	0/1:99,10:28:109:0.092:2
chr1	117142588	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,28:29:63:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr1	117142613	rs76151115	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,22:32:128:0.172:2	0/1:183,7:28:190:0.037:2	./.	./.	./.	./.
chr1	117142641	rs76417519	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,21:30:156:0.135:2	0/1:189,8:26:197:0.041:2	./.	./.	./.	./.
chr1	117142707	rs201515387	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,10:30:134:0.075:2	./.	./.	./.	./.	./.
chr1	117142736	rs138851517	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,20:30:58:0.345:2	./.	0/1:105,4:31:110:0.037:2	./.	./.	./.	./.	./.
chr1	117150617	rs61786588	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,8:29:104:0.077:2	0/1:53,5:31:58:0.086:2	./.	0/1:92,14:32:106:0.132:2	0/1:49,4:30:53:0.075:2	0/1:68,8:30:76:0.105:2	0/1:56,9:32:65:0.138:2	0/1:83,4:29:87:0.046:2	./.	./.	0/1:84,6:32:90:0.067:2
chr1	117150628	rs79475403	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:27:57:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	117158909	rs201676764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,9:32:100:0.090:2
chr1	117158924	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,6:25:79:0.076:2
chr1	117158932	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr1	117159047	rs200016035	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:30:24:0.125:2	./.	./.	0/1:49,9:29:58:0.155:2	./.	./.	./.	./.	0/1:50,5:27:55:0.091:2	./.
chr1	117236736	rs2275281	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	117311147	rs699738	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,25:32:55:0.455:2	0/1:13,12:32:25:0.480:2	./.	./.	./.	./.	./.	./.	0/1:32,28:33:60:0.467:2	0/1:31,23:31:54:0.426:2	./.
chr1	117487323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.	./.
chr1	117487710	rs10159095	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,7:33:13:0.538:2	0/1:3,4:32:7:0.571:2	0/1:1,3:33:4:0.750:2	0/1:0,11:32:11:1.00:2	0/1:1,25:30:26:0.962:2	0/1:1,26:30:27:0.963:2	0/1:11,17:31:28:0.607:2	0/1:1,20:31:21:0.952:2	0/1:0,27:32:28:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,25:31:25:1.00:2
chr1	117487711	rs4546904	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,7:32:13:0.538:2	0/1:3,4:31:7:0.571:2	0/1:1,3:31:4:0.750:2	0/1:0,11:31:11:1.00:2	0/1:1,25:30:26:0.962:2	0/1:1,26:30:27:0.963:2	0/1:12,17:31:29:0.586:2	0/1:1,20:30:21:0.952:2	0/1:0,28:30:28:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,25:30:25:1.00:2
chr1	117503940	rs34625170	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,42:33:108:0.389:2	0/1:16,25:32:41:0.610:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	117529458	rs10801922	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,30:30:66:0.455:2	0/1:8,14:32:22:0.636:2	0/1:7,6:31:13:0.462:2	0/1:46,30:30:76:0.395:2	./.	0/1:43,45:31:88:0.511:2	./.	0/1:0,86:31:86:1.00:2	./.	./.	0/1:41,27:31:68:0.397:2
chr1	117552560	rs7554376	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,47:30:90:0.522:2	0/1:25,35:29:60:0.583:2	./.
chr1	117554352	rs41276560	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,26:32:38:0.684:2	./.	./.	./.	./.
chr1	117554421	rs3754112	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,75:32:75:1.00:2	0/1:36,36:32:72:0.500:2	0/1:53,20:32:73:0.274:2	./.	0/1:67,39:33:106:0.368:2	0/1:33,28:33:61:0.459:2	0/1:45,42:32:87:0.483:2
chr1	117556307	rs141390223	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,28:31:74:0.378:2	./.	./.	./.	./.	./.	./.
chr1	117559726	rs2249265	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:28:71:1.00:2	0/1:0,33:27:33:1.00:2	0/1:4,3:28:7:0.429:2	0/1:0,74:27:74:1.00:2	0/1:1,96:27:97:0.990:2	0/1:0,81:27:81:1.00:2	0/1:49,63:27:112:0.563:2	0/1:1,87:27:88:0.989:2	0/1:0,82:28:82:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,71:27:71:1.00:2
chr1	117560058	rs17235773	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,49:33:104:0.471:2	0/1:32,24:32:56:0.429:2	./.
chr1	117560818	rs3736908	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:47,26:32:73:0.356:2	0/1:34,25:32:59:0.424:2	0/1:6,10:33:16:0.625:2	./.	./.	0/1:60,43:31:103:0.417:2	./.	0/1:61,56:33:117:0.479:2	./.	./.	./.
chr1	117560929	rs3736907	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:27:19:0.632:2	./.	./.	0/1:74,54:30:128:0.422:2	./.	0/1:74,72:30:146:0.493:2	./.	./.	./.
chr1	117576522	rs34223095	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,27:31:49:0.551:2	0/1:13,17:31:30:0.567:2	0/1:2,4:31:6:0.667:2	./.	./.	./.	0/1:52,23:31:75:0.307:2	./.	./.	./.	./.
chr1	117602960	rs2244501	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:3,24:31:28:0.889:2	0/1:0,7:29:7:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,58:30:58:1.00:2	0/1:45,38:30:83:0.458:2	0/1:0,64:29:64:1.00:2	0/1:43,36:28:79:0.456:2
chr1	117617705	rs998532	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,5:33:5:1.00:2	0/1:27,27:32:54:0.500:2	./.	0/1:0,66:32:66:1.00:2	0/1:2,55:33:57:0.965:2	0/1:30,30:32:60:0.500:2	0/1:21,27:33:48:0.563:2	0/1:23,31:32:54:0.574:2	0/1:27,33:31:60:0.550:2
chr1	117618067	rs1289673	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,4:29:4:1.00:2	0/1:38,34:31:72:0.472:2	./.	0/1:0,72:30:72:1.00:2	0/1:0,62:31:62:1.00:2	0/1:48,28:32:76:0.368:2	0/1:36,26:32:62:0.419:2	0/1:25,30:31:55:0.545:2	0/1:59,36:31:95:0.379:2
chr1	117634037	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.	./.
chr1	117634476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.	./.	./.	./.	./.
chr1	117635401	rs41306197	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,69:31:128:0.539:2	./.	./.	./.	./.	./.
chr1	117635487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:29:106:0.038:2	./.	./.	./.	./.	./.	./.
chr1	117637302	rs371128981	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	117656088	rs1289658	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,33:29:81:0.407:2	0/1:22,22:30:44:0.500:2	0/1:6,9:30:15:0.600:2	./.	0/1:0,122:29:122:1.00:2	0/1:46,48:29:94:0.511:2	0/1:99,57:29:156:0.365:2	./.	0/1:86,40:31:126:0.317:2	0/1:53,47:30:100:0.470:2	0/1:46,45:29:91:0.495:2
chr1	117660754	rs749902	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,55:30:125:0.440:2	0/1:49,49:31:98:0.500:2	0/1:17,13:30:30:0.433:2	./.	0/1:2,98:30:100:0.980:2	./.	0/1:68,61:30:129:0.473:2	./.	0/1:86,85:31:172:0.497:2	./.	0/1:86,82:30:168:0.488:2
chr1	117660863	rs146244405	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,54:32:123:0.439:2	./.	./.	./.	./.	./.
chr1	117661251	rs146898739	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,56:32:138:0.406:2	./.	./.	./.	./.	./.
chr1	117664500	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:29:38:0.105:2	./.	./.
chr1	117699223	rs115884997	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.
chr1	117715817	rs77457286	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.
chr1	118003112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr1	118039473	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr1	118065841	rs1290558	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:50,48:33:98:0.490:2	0/1:13,33:33:46:0.717:2	./.	./.	0/1:53,35:32:88:0.398:2	0/1:67,53:31:120:0.442:2	0/1:0,94:33:94:1.00:2	./.	./.	0/1:52,38:32:90:0.422:2	./.
chr1	118065919	rs12120771	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,20:31:58:0.345:2	./.	./.	./.	./.	0/1:25,24:31:49:0.490:2
chr1	118165577	rs865443	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,82:32:166:0.494:2	./.	./.	./.	./.	./.	./.
chr1	118165691	rs1630312	C	T,G	.	PASS	AC=3,2;AF=0.200,0.133;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:29:29:0.552:2	0/1:31:172:0.471:2	0/2:32:195:0.441:2	./.	./.	0/2:32:188:0.022:2	0/1:32:155:0.493:2	./.	./.
chr1	118165973	rs1627787	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,156:31:158:0.987:2	0/1:0,74:32:74:1.00:2	./.	0/1:90,94:31:184:0.511:2	0/1:109,85:31:194:0.438:2	./.	0/1:97,74:32:171:0.433:2	./.	./.	./.	0/1:101,91:31:192:0.474:2
chr1	118166096	rs2884587	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,103:31:105:0.981:2	0/1:0,93:32:93:1.00:2	./.	0/1:97,68:31:165:0.412:2	./.	./.	0/1:97,57:31:154:0.370:2	./.	./.	./.	0/1:93,83:31:176:0.472:2
chr1	118166750	rs2066411	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:33,23:31:56:0.411:2	0/1:24,15:30:39:0.385:2	./.	0/1:25,20:30:45:0.444:2	./.	./.	./.	0/1:22,19:30:41:0.463:2
chr1	118166853	rs58044580	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:30:26:0.538:2	./.	./.	./.	./.
chr1	118166877	rs10923360	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:28:17:0.471:2	./.	./.	0/1:19,17:29:36:0.472:2	./.	0/1:14,12:30:26:0.462:2	./.	./.
chr1	118167199	rs826403	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,8:32:22:0.364:2	0/1:81,63:33:145:0.438:2	./.	./.	0/1:55,51:32:106:0.481:2	./.	0/1:78,86:33:164:0.524:2	./.	./.
chr1	118167653	rs866111	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,41:31:92:0.446:2	./.	0/1:60,55:32:115:0.478:2	./.	./.	./.	./.
chr1	118168234	rs11580608	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.	0/1:28,12:31:40:0.300:2	./.	./.
chr1	118168826	rs11581122	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,119:32:120:0.992:2	0/1:2,61:32:63:0.968:2	./.	0/1:50,58:31:108:0.537:2	./.	./.	0/1:42,38:31:80:0.475:2	./.	./.	./.	0/1:71,46:32:117:0.393:2
chr1	118169011	rs138158904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,43:30:135:0.319:2	./.	./.	./.	./.	./.	./.	./.
chr1	118169463	rs2282456	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	0/1:29,20:33:49:0.408:2	./.	./.
chr1	118449215	rs41276596	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118482104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,3:33:51:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr1	118482149	rs34973445	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:59,27:32:86:0.314:2	0/1:22,21:31:43:0.488:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,38:31:66:0.576:2	./.
chr1	118483474	rs3738420	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,35:29:61:0.574:2	0/1:24,15:30:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118491102	rs34411361	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:32:74:0.405:2	0/1:26,18:32:44:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118495153	rs2295630	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:30:23:0.478:2	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118501627	rs368052262	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.
chr1	118501941	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:12:23:0.391:2	0/1:16,5:22:21:0.238:2	0/1:21,7:16:28:0.250:2	0/1:18,10:17:28:0.357:2	./.	0/1:14,6:20:20:0.300:2	0/1:28,8:20:36:0.222:2
chr1	118506441	rs112012491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,25:31:52:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr1	118509278	rs3738422	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,45:32:111:0.405:2	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118509284	rs61729969	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,43:32:113:0.381:2	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118509327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.	./.	./.
chr1	118516082	rs61729968	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,66:33:136:0.485:2	0/1:66,46:32:112:0.411:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118535211	rs35290515	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,25:28:58:0.431:2	./.	./.	0/1:52,35:29:87:0.402:2	./.	./.	./.
chr1	118565953	rs10923472	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,61:31:61:1.00:2	./.	0/1:29,24:32:53:0.453:2	./.	0/1:24,25:31:49:0.510:2	0/1:45,36:32:81:0.444:2	0/1:1,48:31:49:0.980:2	./.
chr1	118583408	rs10923477	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,124:31:125:0.992:2	./.	0/1:64,54:31:118:0.458:2	./.	0/1:69,65:31:134:0.485:2	0/1:79,60:33:139:0.432:2	0/1:1,115:32:116:0.991:2	./.
chr1	118644430	rs10754367	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,175:30:179:0.978:2	./.	0/1:1,178:29:179:0.994:2	0/1:91,84:30:175:0.480:2	0/1:113,82:30:195:0.421:2	0/1:99,87:30:186:0.468:2	0/1:0,187:30:188:1.00:2	./.
chr1	118644524	rs17185492	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,45:30:92:0.489:2	./.	./.	./.	0/1:48,51:30:99:0.515:2	./.	0/1:0,88:31:88:1.00:2	./.
chr1	118693217	rs1935992	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,55:29:104:0.529:2	0/1:26,28:30:54:0.519:2	0/1:5,11:29:16:0.688:2	./.	0/1:2,62:29:64:0.969:2	./.	./.	0/1:39,41:29:80:0.513:2	0/1:68,58:30:126:0.460:2	./.	./.
chr1	118727746	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,24:32:143:0.168:2	./.	./.
chr1	119427454	rs12569041	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:30:18:0.611:2	./.	./.	./.	0/1:102,87:32:189:0.460:2	./.	0/1:83,81:32:164:0.494:2	./.	./.
chr1	119427467	rs61730011	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:32:22:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	119469188	rs10494217	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,49:32:107:0.458:2	./.	0/1:54,42:33:96:0.438:2	./.	./.
chr1	119474389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.
chr1	119575563	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,103:32:189:0.545:2
chr1	119575818	rs3790549	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,31:33:52:0.596:2	./.	./.	./.	./.	./.
chr1	119584949	rs33960696	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:54,51:31:105:0.486:2	0/1:35,11:31:46:0.239:2	./.	0/1:71,73:32:144:0.507:2	./.	0/1:92,54:31:146:0.370:2	./.	./.	0/1:76,76:32:152:0.500:2	./.	./.
chr1	119923724	rs2275607	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:31:13:0.538:2	0/1:66,54:32:120:0.450:2	0/1:2,63:32:65:0.969:2	0/1:1,100:32:101:0.990:2	0/1:81,35:32:116:0.302:2	./.	0/1:0,96:34:96:1.00:2	0/1:47,40:32:87:0.460:2	0/1:68,44:33:112:0.393:2
chr1	119929395	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.
chr1	120056792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2
chr1	120057158	rs6203	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,7:31:24:0.292:2	0/1:85,51:31:136:0.375:2	./.	0/1:1,88:31:89:0.989:2	0/1:92,54:30:146:0.370:2	0/1:102,76:30:178:0.427:2	./.	0/1:62,68:31:132:0.523:2	./.
chr1	120057205	rs141383681	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:30:168:0.030:2
chr1	120057246	rs1047303	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:31:14:1.00:2	0/1:64,35:31:99:0.354:2	0/1:2,75:30:77:0.974:2	0/1:1,76:30:77:0.987:2	0/1:66,26:30:92:0.283:2	0/1:60,47:31:108:0.439:2	./.	0/1:65,56:31:121:0.463:2	./.
chr1	120165826	rs12076924	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,3:35:3:1.00:2	./.	./.
chr1	120165853	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.
chr1	120166648	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr1	120166681	rs12067843	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:29:15:0.467:2	0/1:3,132:33:135:0.978:2	./.	0/1:85,54:32:139:0.388:2	./.	0/1:0,180:32:180:1.00:2	0/1:0,150:33:150:1.00:2	./.	0/1:76,59:33:135:0.437:2
chr1	120285546	rs543703	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,99:31:100:0.990:2	0/1:0,70:30:70:1.00:2	0/1:0,15:30:15:1.00:2	./.	0/1:106,83:30:190:0.439:2	0/1:97,82:31:179:0.458:2	0/1:4,161:31:166:0.976:2	0/1:2,180:31:183:0.989:2	0/1:97,78:31:176:0.446:2	0/1:1,104:31:105:0.990:2	0/1:0,137:31:138:1.00:2
chr1	120336785	rs1052972	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:2,63:32:65:0.969:2	./.	0/1:102,72:31:174:0.414:2	0/1:71,39:31:110:0.355:2	0/1:74,78:31:152:0.513:2	0/1:66,67:31:133:0.504:2	0/1:1,143:31:144:0.993:2	0/1:84,68:32:153:0.447:2	0/1:84,52:31:136:0.382:2	0/1:82,66:31:148:0.446:2
chr1	120345596	rs12739869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	./.	./.	./.	./.
chr1	120377476	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.
chr1	120377490	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:140:0.029:2	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.
chr1	120378678	rs3009182	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,85:33:86:0.988:2	0/1:0,55:32:55:1.00:2	0/1:0,16:32:16:1.00:2	0/1:3,121:33:124:0.976:2	0/1:65,58:32:123:0.472:2	0/1:1,118:32:119:0.992:2	0/1:0,106:32:106:1.00:2	0/1:4,108:32:112:0.964:2	0/1:0,122:33:122:1.00:2	0/1:53,47:33:100:0.470:2	0/1:0,103:32:103:1.00:2
chr1	120379954	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,5:30:69:0.072:2	0/1:130,15:31:145:0.103:2	0/1:65,10:34:75:0.133:2	0/1:90,7:32:97:0.072:2	./.	0/1:130,8:31:138:0.058:2	./.
chr1	120379960	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,5:32:69:0.072:2	0/1:129,13:33:142:0.092:2	./.	0/1:94,7:33:102:0.069:2	./.	0/1:125,8:33:133:0.060:2	./.
chr1	120381846	rs61789693	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.	./.	./.	./.	./.	0/1:105,78:34:183:0.426:2	./.	./.
chr1	120381920	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.
chr1	120381953	rs184108208	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,3:34:77:0.039:2	./.	./.	./.	./.	./.	./.
chr1	120384205	rs2994820	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:32:72:0.986:2	0/1:0,43:32:43:1.00:2	0/1:0,3:32:3:1.00:2	0/1:6,64:32:70:0.914:2	0/1:19,21:32:40:0.525:2	0/1:4,61:31:65:0.938:2	0/1:0,36:32:36:1.00:2	0/1:2,72:32:74:0.973:2	0/1:2,88:33:90:0.978:2	0/1:57,41:33:98:0.418:2	0/1:0,63:33:63:1.00:2
chr1	120387000	rs200602121	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr1	120387120	rs12405228	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,15:33:41:0.366:2	0/1:9,14:33:23:0.609:2	0/1:0,4:33:4:1.00:2	0/1:32,14:32:46:0.304:2	./.	0/1:18,15:32:33:0.455:2	0/1:17,16:30:33:0.485:2	0/1:16,20:32:36:0.556:2	0/1:10,15:34:25:0.600:2	0/1:22,12:32:34:0.353:2	0/1:29,18:32:47:0.383:2
chr1	120436751	rs35273427	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,75:33:136:0.551:2	0/1:46,51:33:97:0.526:2	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	0/1:49,55:32:104:0.529:2	./.	./.	0/1:84,92:33:176:0.523:2
chr1	120437718	rs2793823	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,25:32:57:0.439:2	0/1:10,12:30:22:0.545:2	./.	./.	0/1:34,39:31:73:0.534:2	0/1:37,32:30:69:0.464:2	0/1:35,30:31:65:0.462:2	0/1:38,36:31:74:0.486:2	./.	./.	0/1:30,45:31:75:0.600:2
chr1	120437884	rs2641348	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,47:33:113:0.416:2	0/1:68,46:32:114:0.404:2	./.	./.	0/1:87,105:33:192:0.547:2	0/1:79,91:32:170:0.535:2	0/1:100,100:33:200:0.500:2	0/1:107,90:32:197:0.457:2	./.	./.	0/1:73,88:33:161:0.547:2
chr1	120438827	rs41276636	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,16:25:37:0.432:2	./.	0/1:14,23:28:37:0.622:2	./.	./.	0/1:38,28:29:66:0.424:2	./.
chr1	120439109	rs6668119	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:26:4:0.750:2	./.	./.	0/1:1,3:27:4:0.750:2	./.	./.	./.
chr1	120458004	rs6685892	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,31:33:75:0.413:2	0/1:24,24:32:48:0.500:2	./.	./.	0/1:75,48:31:123:0.390:2	0/1:56,39:31:95:0.411:2	0/1:70,39:31:110:0.358:2	0/1:61,50:32:111:0.450:2	./.	./.	0/1:37,38:33:75:0.507:2
chr1	120458122	rs35586704	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,53:32:115:0.461:2
chr1	120465269	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:29:50:0.580:2	./.	./.	./.	./.	./.
chr1	120466444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,5:28:151:0.033:2	./.	./.	./.
chr1	120467981	rs61756001	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,87:32:187:0.465:2	./.	./.	./.	./.	./.
chr1	120469147	rs61752484	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,87:33:186:0.468:2	./.	./.	./.	./.	./.
chr1	120478125	rs147223770	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,44:33:75:0.587:2	./.	./.
chr1	120497737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,6:33:187:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	120539668	rs200464440	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,6:33:183:0.033:2	0/1:193,4:32:197:0.020:2	./.	0/1:182,7:29:189:0.037:2	./.	0/1:182,10:30:194:0.052:2	0/1:183,8:32:191:0.042:2	./.
chr1	120539687	rs2261101	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,12:33:180:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,9:32:182:0.049:2
chr1	120539742	rs2258139	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	0/1:154,7:32:161:0.043:2	./.	./.	./.	./.	./.	./.	./.	0/1:181,12:31:193:0.062:2	0/1:180,10:31:190:0.053:2
chr1	120548055	rs199592384	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,51:29:198:0.259:2	./.	./.	./.	./.
chr1	120548094	rs201643251	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:176,9:33:185:0.049:2	./.	./.	./.	0/1:175,8:32:183:0.044:2	0/1:178,14:30:193:0.073:2	0/1:183,12:33:196:0.062:2	./.	0/1:182,8:32:191:0.042:2	0/1:180,6:32:186:0.032:2	0/1:183,7:32:190:0.037:2
chr1	120572547	rs141882865	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,11:36:195:0.056:2	0/1:182,15:32:197:0.076:2	0/1:187,9:33:196:0.046:2	0/1:174,25:33:199:0.126:2	0/1:178,18:32:196:0.092:2	0/1:175,24:32:199:0.121:2	0/1:175,20:34:195:0.103:2	0/1:189,9:33:198:0.045:2	0/1:172,20:34:192:0.104:2	0/1:186,9:33:195:0.046:2	0/1:178,10:35:188:0.053:2
chr1	120572572	rs146242578	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,13:32:190:0.068:2	0/1:183,15:31:198:0.076:2	0/1:154,8:31:162:0.049:2	0/1:165,32:31:197:0.162:2	0/1:179,20:30:199:0.101:2	0/1:164,33:31:197:0.168:2	0/1:177,21:31:198:0.106:2	0/1:185,11:31:196:0.056:2	0/1:167,28:33:195:0.144:2	0/1:176,19:31:195:0.097:2	0/1:180,14:33:195:0.072:2
chr1	120572612	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,46:33:196:0.235:2	0/1:145,54:33:199:0.271:2	0/1:143,7:32:151:0.047:2	0/1:163,32:33:195:0.164:2	0/1:182,17:32:199:0.085:2	./.	0/1:182,17:33:199:0.085:2	0/1:177,19:33:196:0.097:2	0/1:169,27:34:196:0.138:2	0/1:180,18:33:198:0.091:2	0/1:173,23:34:196:0.117:2
chr1	120611964	rs11810554	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	120842039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:35:197:0.025:2	./.	./.	./.
chr1	120846009	rs372041034	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	120846060	rs199780572	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,84:32:191:0.440:2	0/1:115,81:32:196:0.413:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	120854528	rs78105048	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,70:32:199:0.352:2	./.	./.	./.
chr1	120930077	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	120934414	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,9:32:196:0.046:2	./.	./.	./.
chr1	120934573	rs201922049	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,30:32:197:0.152:2	./.	./.	./.	0/1:159,33:33:193:0.172:2
chr1	143767466	rs77641628	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	0/1:20,3:33:23:0.130:2	./.	./.
chr1	143767513	rs6604511	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,4:31:62:0.066:2	./.	./.	0/1:43,14:31:57:0.246:2	0/1:42,20:30:62:0.323:2	0/1:29,18:30:47:0.383:2	0/1:31,9:30:40:0.225:2	0/1:43,15:30:58:0.259:2	0/1:33,4:30:37:0.108:2	0/1:35,7:33:42:0.167:2	0/1:44,5:33:49:0.102:2
chr1	143767522	rs6604512	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,4:33:69:0.058:2	0/1:40,3:33:43:0.070:2	./.	0/1:48,14:32:62:0.226:2	0/1:43,21:31:64:0.328:2	0/1:33,16:32:49:0.327:2	0/1:37,8:30:45:0.178:2	0/1:41,23:33:64:0.359:2	0/1:32,4:32:36:0.111:2	0/1:37,8:31:45:0.178:2	0/1:46,4:33:50:0.080:2
chr1	143767547	rs2490183	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,4:32:68:0.059:2	./.	./.	0/1:61,19:30:80:0.238:2	0/1:47,15:30:62:0.242:2	0/1:43,13:30:56:0.232:2	0/1:45,6:29:51:0.118:2	0/1:48,26:30:74:0.351:2	./.	0/1:51,6:28:57:0.105:2	./.
chr1	143767628	rs6604514	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,13:32:133:0.098:2	0/1:74,9:29:83:0.108:2	0/1:15,5:31:20:0.250:2	0/1:122,20:31:142:0.141:2	0/1:75,12:31:87:0.138:2	0/1:122,13:30:135:0.096:2	0/1:93,5:30:98:0.051:2	0/1:118,20:31:138:0.145:2	0/1:103,19:31:122:0.156:2	0/1:105,16:30:121:0.132:2	0/1:144,11:32:155:0.071:2
chr1	143767643	rs61824238	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,51:30:152:0.336:2	0/1:60,35:30:95:0.368:2	0/1:13,7:28:20:0.350:2	0/1:103,39:30:142:0.275:2	0/1:77,16:30:93:0.172:2	0/1:105,43:30:148:0.291:2	0/1:90,14:30:104:0.135:2	0/1:121,29:31:151:0.193:2	0/1:93,39:30:132:0.295:2	0/1:95,37:31:132:0.280:2	0/1:118,56:31:174:0.322:2
chr1	143767646	rs148974023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,47:29:139:0.338:2	./.	./.
chr1	143767739	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,12:32:108:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	143767778	rs6604516	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,91:32:195:0.472:2	0/1:124,72:32:196:0.367:2	0/1:90,69:31:159:0.434:2	0/1:140,56:33:196:0.286:2	0/1:138,56:32:194:0.289:2	0/1:137,55:33:192:0.286:2	0/1:145,54:33:199:0.271:2	0/1:143,51:33:194:0.263:2	0/1:143,49:34:192:0.255:2	0/1:126,71:32:197:0.360:2	0/1:136,51:34:187:0.273:2
chr1	143767833	rs7521153	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,55:27:175:0.314:2	0/1:128,53:27:181:0.293:2	0/1:87,37:27:124:0.298:2	0/1:137,60:27:197:0.305:2	0/1:138,52:27:190:0.274:2	0/1:145,53:27:198:0.268:2	0/1:149,44:27:193:0.228:2	0/1:146,50:27:196:0.255:2	0/1:128,70:28:198:0.354:2	0/1:140,55:26:195:0.282:2	0/1:134,59:26:193:0.306:2
chr1	143767878	rs7513869	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,47:31:167:0.281:2	0/1:124,61:31:185:0.330:2	0/1:48,10:32:58:0.172:2	0/1:124,57:31:182:0.315:2	0/1:123,55:31:178:0.309:2	0/1:129,48:30:177:0.271:2	0/1:131,49:31:180:0.272:2	0/1:133,46:31:179:0.257:2	0/1:119,57:32:176:0.324:2	0/1:140,32:32:172:0.186:2	0/1:126,55:31:181:0.304:2
chr1	143767935	rs7521254	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,25:33:142:0.176:2	0/1:73,32:33:105:0.305:2	./.	0/1:125,24:33:149:0.161:2	0/1:87,28:31:115:0.243:2	0/1:96,24:32:120:0.200:2	0/1:73,27:32:100:0.270:2	0/1:112,20:33:132:0.152:2	0/1:116,24:33:140:0.171:2	0/1:93,22:32:115:0.191:2	0/1:124,31:32:155:0.200:2
chr1	143767943	rs72701807	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,36:32:98:0.367:2	0/1:76,51:32:127:0.402:2	./.	./.	0/1:95,59:33:154:0.383:2
chr1	143768035	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,5:21:36:0.139:2	./.	./.	./.	0/1:26,6:28:32:0.188:2	./.	./.
chr1	143768046	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,4:25:34:0.118:2	0/1:24,5:22:29:0.172:2	./.	./.	0/1:20,6:22:26:0.231:2	./.	./.
chr1	143768108	rs7514079	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,12:31:21:0.571:2	./.	./.	0/1:10,7:31:17:0.412:2	0/1:9,9:27:18:0.500:2	0/1:8,13:27:21:0.619:2	0/1:8,4:30:12:0.333:2	./.	0/1:6,3:31:9:0.333:2	0/1:4,3:28:7:0.429:2	0/1:11,11:30:22:0.500:2
chr1	143768137	rs7521440	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	./.	0/1:1,2:33:3:0.667:2	0/1:6,3:33:9:0.333:2	0/1:7,6:26:13:0.462:2	0/1:5,8:31:13:0.615:2	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:7,6:28:13:0.462:2
chr1	143768139	rs7550186	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,6:32:11:0.545:2	./.	./.	0/1:6,3:31:9:0.333:2	0/1:7,6:28:13:0.462:2	0/1:5,8:30:13:0.615:2	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:7,6:30:13:0.462:2
chr1	143906122	rs373752917	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:187,7:32:195:0.036:2	0/1:184,12:32:196:0.061:2	./.	0/1:192,7:32:199:0.035:2	0/1:194,5:31:199:0.025:2	./.	./.	./.	0/1:193,6:31:199:0.030:2	./.	0/1:192,6:33:198:0.030:2
chr1	143914163	rs148754361	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,26:23:107:0.243:2	0/1:98,22:24:120:0.183:2	./.	0/1:118,34:25:152:0.224:2	0/1:120,32:21:153:0.211:2	0/1:78,34:24:112:0.304:2	0/1:100,26:23:126:0.206:2	0/1:114,24:22:138:0.174:2	0/1:110,23:23:133:0.173:2	0/1:95,14:20:109:0.128:2	0/1:77,16:20:93:0.172:2
chr1	144014051	rs1884147	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,16:29:55:0.291:2	0/1:27,5:30:32:0.156:2	./.	0/1:47,13:26:61:0.217:2	0/1:60,12:30:72:0.167:2	0/1:47,16:30:63:0.254:2	0/1:53,19:28:72:0.264:2	0/1:63,34:30:97:0.351:2	0/1:52,25:31:77:0.325:2	0/1:39,13:30:52:0.250:2	0/1:61,18:30:79:0.228:2
chr1	144014068	rs1884146	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,29:27:49:0.592:2	0/1:8,19:27:27:0.704:2	0/1:6,3:28:9:0.333:2	0/1:13,36:27:49:0.735:2	0/1:32,29:29:61:0.475:2	0/1:19,32:29:51:0.627:2	0/1:16,31:28:47:0.660:2	0/1:24,50:28:74:0.676:2	0/1:31,30:29:61:0.492:2	0/1:18,25:28:43:0.581:2	0/1:29,36:27:65:0.554:2
chr1	144053567	rs202144114	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,43:32:192:0.224:2	0/1:150,48:32:198:0.242:2	0/1:123,34:31:157:0.217:2	0/1:150,44:32:194:0.227:2	0/1:144,54:31:198:0.273:2	0/1:143,53:32:196:0.270:2	0/1:152,47:31:199:0.236:2	0/1:156,40:32:196:0.204:2	0/1:142,48:32:192:0.253:2	0/1:145,51:32:197:0.260:2	0/1:141,49:32:190:0.258:2
chr1	144363849	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:34:9:0.333:2	./.	./.	./.
chr1	144363953	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,4:26:16:0.250:2	./.	./.	./.	./.	./.	0/1:25,4:27:29:0.138:2	./.	0/1:33,4:26:37:0.108:2	0/1:10,3:27:13:0.231:2	./.
chr1	144363963	.	T	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,11:32:24:0.458:2	0/1:8,5:32:13:0.385:2	./.	0/1:34,3:32:37:0.081:2	0/1:31,6:31:37:0.162:2	0/1:46,7:31:53:0.132:2	0/1:28,6:33:34:0.176:2	0/1:10,6:33:16:0.375:2	0/1:35,7:33:42:0.167:2	0/1:8,8:32:16:0.500:2	0/1:23,7:30:30:0.233:2
chr1	144364062	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144364073	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,66:32:132:0.500:2	0/1:49,51:33:100:0.510:2	0/1:12,13:32:25:0.520:2	0/1:131,67:32:199:0.338:2	0/1:135,65:31:200:0.325:2	0/1:135,62:32:197:0.315:2	0/1:146,52:33:198:0.263:2	0/1:97,100:32:198:0.508:2	0/1:144,52:33:196:0.265:2	0/1:97,76:33:173:0.439:2	0/1:111,80:32:191:0.419:2
chr1	144364083	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,111:33:182:0.610:2	0/1:51,84:32:135:0.622:2	0/1:14,18:31:32:0.563:2	0/1:105,89:33:194:0.459:2	0/1:116,81:33:197:0.411:2	0/1:106,92:32:198:0.465:2	0/1:135,63:33:198:0.318:2	0/1:90,103:32:193:0.534:2	0/1:131,64:33:195:0.328:2	0/1:94,99:33:193:0.513:2	0/1:97,97:32:194:0.500:2
chr1	144364195	rs200241118	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,146:28:148:0.993:2	0/1:5,85:28:90:0.944:2	0/1:0,54:29:54:1.00:2	0/1:3,144:29:147:0.980:2	0/1:5,153:28:158:0.968:2	0/1:3,158:29:162:0.981:2	0/1:68,114:29:182:0.626:2	0/1:46,135:28:181:0.746:2	0/1:2,168:29:170:0.988:2	0/1:2,145:28:148:0.986:2	0/1:62,122:28:184:0.663:2
chr1	144364250	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,84:32:85:0.988:2	0/1:0,35:32:35:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,62:32:62:1.00:2	0/1:2,55:31:58:0.965:2	0/1:1,63:32:64:0.984:2	0/1:46,37:32:83:0.446:2	0/1:0,70:31:70:1.00:2	0/1:0,71:33:72:1.00:2	0/1:0,59:33:59:1.00:2	0/1:65,60:31:125:0.480:2
chr1	144364331	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,6:27:25:0.240:2	./.	./.	./.	./.	./.	./.	./.
chr1	144364443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr1	144364510	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.
chr1	144618123	rs61809735	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,24:32:186:0.130:2	0/1:96,6:29:102:0.059:2	./.	0/1:167,23:32:190:0.121:2	0/1:163,16:32:179:0.089:2	0/1:160,35:32:195:0.179:2	0/1:176,20:32:196:0.102:2	0/1:174,19:32:193:0.098:2	0/1:156,32:32:188:0.170:2	0/1:165,25:31:190:0.132:2	./.
chr1	144618144	rs61809736	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,151:30:153:0.987:2	0/1:0,90:29:90:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,161:30:161:1.00:2	0/1:1,165:30:166:0.994:2	0/1:0,154:30:154:1.00:2	0/1:58,119:30:177:0.672:2	0/1:0,156:30:156:1.00:2	0/1:0,158:31:158:1.00:2	0/1:0,157:30:157:1.00:2	0/1:0,154:31:154:1.00:2
chr1	144618165	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,21:30:132:0.159:2	./.	./.	./.
chr1	144618201	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,32:26:95:0.337:2	0/1:23,24:26:47:0.511:2	0/1:8,4:26:12:0.333:2	0/1:86,39:26:125:0.312:2	0/1:42,22:27:64:0.344:2	0/1:69,38:27:107:0.355:2	0/1:70,18:27:89:0.205:2	0/1:66,28:27:94:0.298:2	0/1:72,27:28:99:0.273:2	0/1:80,23:26:104:0.223:2	0/1:54,18:26:72:0.250:2
chr1	144618235	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144618274	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	144619896	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.	./.	./.
chr1	144619903	rs71527379	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:121,14:33:138:0.104:2	0/1:76,8:32:84:0.095:2	./.	./.	./.	./.	0/1:1,8:33:10:0.889:2	0/1:3,20:32:23:0.870:2	./.	0/1:112,11:32:124:0.089:2	0/1:3,26:33:30:0.897:2
chr1	144619914	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,7:27:128:0.055:2	./.	./.	0/1:124,8:26:132:0.061:2	./.	0/1:69,8:23:77:0.104:2	0/1:82,16:27:98:0.163:2	0/1:192,6:27:198:0.030:2	0/1:180,7:26:187:0.037:2	0/1:89,22:26:111:0.198:2
chr1	144619969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:32:198:0.030:2	./.	./.	./.
chr1	144620009	rs200933214	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:168,27:31:195:0.138:2	0/1:169,27:31:196:0.138:2	0/1:170,23:31:193:0.119:2	./.	./.	./.	0/1:181,17:28:198:0.086:2	0/1:186,12:31:198:0.061:2	./.	0/1:184,9:33:193:0.047:2	0/1:166,26:31:192:0.135:2
chr1	144620077	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,14:32:194:0.072:2	0/1:182,12:32:194:0.062:2	0/1:92,19:31:111:0.171:2	0/1:190,10:32:200:0.050:2	0/1:168,30:31:198:0.152:2	0/1:168,27:31:195:0.138:2	0/1:178,19:31:197:0.096:2	0/1:179,17:31:196:0.087:2	0/1:174,21:32:195:0.108:2	0/1:173,24:32:197:0.122:2	./.
chr1	144620091	rs151155946	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:139,48:31:187:0.257:2	0/1:116,38:32:154:0.247:2	0/1:58,14:31:72:0.194:2	./.	./.	./.	0/1:111,83:32:194:0.428:2	0/1:103,90:32:193:0.466:2	./.	0/1:138,47:33:185:0.254:2	0/1:124,58:33:182:0.319:2
chr1	144814702	rs202229831	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,7:31:67:0.104:2	0/1:36,7:32:45:0.163:2	./.	0/1:84,5:31:89:0.056:2	./.	./.	0/1:80,7:32:89:0.080:2	0/1:75,8:32:83:0.096:2	0/1:66,4:33:70:0.057:2	0/1:47,5:30:52:0.096:2	0/1:93,7:32:100:0.070:2
chr1	144814763	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:79,13:32:92:0.141:2	0/1:46,8:32:54:0.148:2	./.	./.	./.	./.	0/1:71,15:33:86:0.174:2	0/1:86,31:32:117:0.265:2	./.	0/1:74,10:32:84:0.119:2	0/1:85,11:33:96:0.115:2
chr1	144816476	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,5:33:123:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	144816477	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:121,8:30:129:0.062:2	./.	./.	./.	0/1:80,5:33:85:0.059:2	0/1:128,5:35:133:0.038:2	0/1:96,5:34:101:0.050:2	./.	0/1:140,7:34:147:0.048:2	./.	0/1:127,7:28:134:0.052:2
chr1	144816538	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,5:30:131:0.038:2	./.	./.	./.	./.	./.	./.
chr1	144816591	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,8:32:189:0.042:2	./.	./.
chr1	144816621	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,6:34:170:0.035:2	./.	./.	./.	./.	0/1:180,5:32:185:0.027:2	0/1:185,5:28:190:0.026:2	./.	0/1:186,4:34:190:0.021:2	./.	0/1:172,6:33:179:0.034:2
chr1	144825519	rs678781	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:7,15:32:23:0.682:2	0/1:11,13:31:24:0.542:2	./.	./.	0/1:33,3:32:36:0.083:2	./.	./.	./.	./.	0/1:29,4:33:34:0.121:2	./.
chr1	144828548	rs200319336	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:94,6:32:100:0.060:2	./.	./.	0/1:150,10:33:160:0.063:2	./.	./.	0/1:103,7:33:110:0.064:2	0/1:141,5:33:146:0.034:2	0/1:153,5:33:158:0.032:2	0/1:115,7:32:122:0.057:2	0/1:167,10:31:177:0.056:2
chr1	144828556	rs12030770	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,5:33:108:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144828583	rs28712116	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:97,11:31:108:0.102:2	0/1:73,5:30:78:0.064:2	./.	0/1:186,8:30:194:0.041:2	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	0/1:178,7:28:185:0.038:2
chr1	144828599	rs28736716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,9:31:140:0.064:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144828610	rs12026633	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:122,35:27:157:0.223:2	0/1:90,15:24:105:0.143:2	./.	0/1:186,10:26:196:0.051:2	0/1:157,6:25:163:0.037:2	./.	./.	./.	./.	0/1:189,6:26:195:0.031:2	0/1:184,8:25:192:0.042:2
chr1	144828613	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,10:30:198:0.051:2	./.	./.	./.	./.
chr1	144828618	rs200013824	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.	./.	0/1:192,5:32:197:0.025:2	0/1:190,5:30:195:0.026:2	./.	./.	./.	0/1:191,6:31:197:0.030:2	0/1:187,5:33:192:0.026:2
chr1	144828683	rs369617939	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:183,5:31:188:0.027:2	./.	./.	./.	0/1:188,5:33:193:0.026:2	./.	./.	./.	./.	./.	./.
chr1	144828704	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr1	144828722	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.
chr1	144828764	rs114576842	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:156,4:31:160:0.025:2	./.	./.	0/1:138,5:33:143:0.035:2	0/1:105,6:31:111:0.054:2	0/1:132,9:32:141:0.064:2	0/1:118,5:31:123:0.041:2	0/1:137,8:32:145:0.055:2	./.	0/1:133,8:29:141:0.057:2	0/1:151,5:29:156:0.032:2
chr1	144828765	rs1043478	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:133,21:32:158:0.136:2	0/1:95,10:33:107:0.095:2	0/1:20,3:34:26:0.130:2	./.	./.	./.	0/1:102,14:33:122:0.121:2	./.	./.	./.	./.
chr1	144828784	rs78667364	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,19:32:158:0.120:2	0/1:91,8:33:99:0.081:2	0/1:21,3:33:24:0.125:2	0/1:133,24:33:157:0.153:2	0/1:93,18:34:111:0.162:2	0/1:130,27:33:157:0.172:2	0/1:93,17:33:110:0.155:2	0/1:122,19:34:141:0.135:2	0/1:139,16:32:155:0.103:2	0/1:130,13:33:143:0.091:2	0/1:144,20:33:164:0.122:2
chr1	144852379	rs113954821	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,26:31:115:0.226:2	./.	./.	./.	./.
chr1	144852390	rs61804988	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,35:32:74:0.473:2	0/1:18,18:32:36:0.500:2	0/1:12,3:32:15:0.200:2	0/1:79,44:32:123:0.358:2	0/1:81,74:32:155:0.477:2	0/1:74,75:32:149:0.503:2	0/1:65,61:32:126:0.484:2	0/1:68,59:32:127:0.465:2	0/1:62,46:33:108:0.426:2	0/1:70,49:32:119:0.412:2	0/1:49,43:31:92:0.467:2
chr1	144852476	rs1616066	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,19:29:49:0.388:2	0/1:14,5:28:19:0.263:2	0/1:6,4:29:10:0.400:2	0/1:41,38:29:79:0.481:2	0/1:32,33:29:65:0.508:2	0/1:44,24:29:68:0.353:2	0/1:36,27:28:63:0.429:2	0/1:28,34:29:62:0.548:2	0/1:39,33:30:72:0.458:2	0/1:36,39:29:75:0.520:2	0/1:48,32:29:80:0.400:2
chr1	144854180	rs4997148	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,40:30:163:0.245:2	0/1:144,35:29:179:0.196:2	0/1:48,20:30:68:0.294:2	0/1:119,34:28:153:0.222:2	0/1:117,23:29:140:0.164:2	0/1:153,14:29:167:0.084:2	0/1:108,34:28:142:0.239:2	0/1:128,25:29:153:0.163:2	0/1:132,33:30:165:0.200:2	0/1:123,36:29:159:0.226:2	0/1:125,43:29:168:0.256:2
chr1	144854528	rs78461771	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:109,35:27:144:0.243:2	0/1:52,19:28:71:0.268:2	./.	0/1:157,28:28:185:0.151:2	0/1:173,23:28:196:0.117:2	0/1:172,15:29:187:0.080:2	0/1:167,13:29:180:0.072:2	0/1:133,45:29:178:0.253:2	0/1:122,54:29:176:0.307:2	0/1:145,14:29:159:0.088:2	0/1:159,10:27:169:0.059:2
chr1	144854537	rs3851872	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,35:32:146:0.240:2	0/1:57,17:31:74:0.230:2	./.	0/1:154,24:32:178:0.135:2	0/1:172,20:30:192:0.104:2	0/1:170,13:33:183:0.071:2	0/1:169,12:32:181:0.066:2	0/1:136,42:32:178:0.236:2	0/1:124,56:32:180:0.311:2	0/1:158,13:33:171:0.076:2	0/1:163,10:29:173:0.058:2
chr1	144854564	rs147331822	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,25:31:173:0.145:2	./.	./.	./.	./.
chr1	144854581	rs78371650	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,25:33:165:0.152:2	0/1:96,22:32:118:0.186:2	./.	0/1:146,19:33:165:0.115:2	0/1:155,16:33:171:0.094:2	0/1:156,14:33:170:0.082:2	0/1:152,19:32:171:0.111:2	0/1:139,28:32:167:0.168:2	0/1:154,14:33:168:0.083:2	0/1:160,14:33:174:0.080:2	0/1:156,15:31:171:0.088:2
chr1	144854594	rs79028512	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,23:30:156:0.147:2	0/1:97,22:30:119:0.185:2	./.	0/1:148,20:28:169:0.119:2	0/1:157,10:30:167:0.060:2	0/1:154,20:29:174:0.115:2	0/1:138,20:28:158:0.127:2	0/1:129,31:29:160:0.194:2	0/1:151,17:30:168:0.101:2	0/1:146,20:29:166:0.120:2	0/1:150,14:28:164:0.085:2
chr1	144854597	rs3851873	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,100:32:140:0.714:2	0/1:30,83:32:113:0.735:2	0/1:15,6:32:21:0.286:2	0/1:76,83:33:160:0.522:2	0/1:73,80:32:154:0.523:2	0/1:86,76:33:162:0.469:2	0/1:82,59:32:141:0.418:2	0/1:66,91:32:157:0.580:2	0/1:88,69:34:157:0.439:2	0/1:81,70:33:151:0.464:2	0/1:84,64:32:148:0.432:2
chr1	144854598	rs3863691	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,61:32:144:0.424:2	0/1:70,47:32:117:0.402:2	0/1:16,5:31:21:0.238:2	0/1:99,64:32:163:0.393:2	0/1:98,58:32:156:0.372:2	0/1:113,56:32:169:0.331:2	0/1:104,40:33:144:0.278:2	0/1:102,59:32:161:0.366:2	0/1:110,52:33:162:0.321:2	0/1:108,51:33:159:0.321:2	0/1:109,51:31:160:0.319:2
chr1	144854608	rs2798855	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,32:32:181:0.177:2	./.	./.	./.
chr1	144855782	rs71246352	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,28:33:112:0.250:2	0/1:61,11:33:72:0.153:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144855812	rs1699754	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,60:29:89:0.674:2	0/1:15,30:28:45:0.667:2	0/1:9,7:31:16:0.438:2	0/1:63,28:28:91:0.308:2	0/1:57,30:27:87:0.345:2	0/1:59,39:29:99:0.398:2	0/1:78,35:25:113:0.310:2	0/1:64,31:26:95:0.326:2	0/1:57,31:28:88:0.352:2	0/1:62,44:28:106:0.415:2	0/1:58,32:27:90:0.356:2
chr1	144855866	rs1698582	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,17:32:50:0.340:2	0/1:14,6:32:21:0.300:2	./.	0/1:49,17:32:66:0.258:2	0/1:40,14:31:55:0.259:2	0/1:36,18:30:54:0.333:2	0/1:68,13:29:81:0.160:2	0/1:56,16:30:73:0.222:2	0/1:43,18:32:61:0.295:2	0/1:41,19:30:61:0.317:2	0/1:41,21:30:63:0.339:2
chr1	144856817	rs3844239	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:39,3:33:42:0.071:2	./.	0/1:63,4:33:67:0.060:2	0/1:68,4:31:72:0.056:2	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.
chr1	144856900	rs144438268	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,32:32:199:0.161:2	./.	./.	./.
chr1	144856941	rs150294397	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,52:32:195:0.267:2	./.	./.	0/1:152,39:32:191:0.204:2
chr1	144856964	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,14:32:195:0.072:2	0/1:176,17:32:194:0.088:2	./.	./.	0/1:172,21:32:193:0.109:2	0/1:178,8:30:186:0.043:2
chr1	144863320	rs139822181	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,56:33:198:0.283:2	./.	./.	./.
chr1	144863355	rs200086940	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,11:33:197:0.056:2	./.	0/1:181,16:33:197:0.081:2	./.	./.
chr1	144863366	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2	0/1:194,5:33:199:0.025:2	./.	./.
chr1	144863401	rs71225704	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.	0/1:113,52:32:165:0.315:2	0/1:155,41:31:196:0.209:2	./.	0/1:145,38:33:183:0.208:2	0/1:152,41:32:193:0.212:2
chr1	144864143	rs112629810	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,22:32:192:0.115:2	./.	./.	./.
chr1	144865850	rs1613780	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,44:31:117:0.376:2	0/1:37,34:32:71:0.479:2	0/1:14,9:31:23:0.391:2	0/1:93,72:32:165:0.436:2	0/1:96,51:31:147:0.347:2	0/1:102,76:31:178:0.427:2	0/1:100,69:31:169:0.408:2	0/1:132,64:31:196:0.327:2	0/1:107,72:32:179:0.402:2	0/1:108,40:31:148:0.270:2	0/1:113,57:32:170:0.335:2
chr1	144866643	rs1620560	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,21:32:43:0.488:2	0/1:18,13:31:31:0.419:2	0/1:13,6:33:19:0.316:2	0/1:51,42:32:93:0.452:2	0/1:42,15:30:57:0.263:2	0/1:44,38:32:82:0.463:2	0/1:66,43:32:109:0.394:2	0/1:64,42:32:106:0.396:2	0/1:39,32:33:71:0.451:2	0/1:49,40:32:89:0.449:2	0/1:54,38:33:92:0.413:2
chr1	144866662	rs1064044	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,40:32:46:0.870:2	0/1:8,17:32:25:0.680:2	0/1:13,6:32:19:0.316:2	0/1:45,41:32:86:0.477:2	0/1:40,22:32:62:0.355:2	0/1:41,33:32:74:0.446:2	0/1:66,42:32:108:0.389:2	0/1:69,43:32:112:0.384:2	0/1:41,30:33:71:0.423:2	0/1:48,35:31:83:0.422:2	0/1:58,33:32:91:0.363:2
chr1	144868170	rs1628310	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,30:28:63:0.476:2	0/1:18,21:30:39:0.538:2	0/1:2,6:27:8:0.750:2	0/1:23,35:28:58:0.603:2	0/1:31,40:29:71:0.563:2	0/1:33,33:29:66:0.500:2	0/1:32,50:29:82:0.610:2	0/1:57,42:29:99:0.424:2	0/1:39,41:29:80:0.513:2	0/1:37,23:28:60:0.383:2	0/1:45,38:30:83:0.458:2
chr1	144871738	rs1698605	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,12:31:33:0.364:2	0/1:12,13:31:25:0.520:2	0/1:3,6:31:9:0.667:2	0/1:23,20:31:43:0.465:2	0/1:42,21:30:63:0.333:2	0/1:18,24:31:42:0.571:2	0/1:37,17:30:54:0.315:2	0/1:30,30:31:60:0.500:2	0/1:26,6:32:32:0.188:2	0/1:25,12:31:37:0.324:2	0/1:30,13:31:43:0.302:2
chr1	144871755	rs1778159	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,17:30:44:0.386:2	0/1:13,13:32:26:0.500:2	./.	0/1:26,20:31:47:0.435:2	0/1:42,25:31:67:0.373:2	0/1:23,27:33:50:0.540:2	0/1:35,22:32:57:0.386:2	0/1:32,36:32:68:0.529:2	0/1:29,9:33:38:0.237:2	0/1:23,15:32:38:0.395:2	0/1:31,17:31:48:0.354:2
chr1	144871782	rs1778158	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,21:33:51:0.412:2	0/1:22,12:31:34:0.353:2	./.	0/1:37,19:33:56:0.339:2	0/1:44,27:32:71:0.380:2	0/1:29,28:33:57:0.491:2	0/1:39,28:32:67:0.418:2	0/1:39,48:32:87:0.552:2	0/1:39,12:33:51:0.235:2	0/1:28,15:32:43:0.349:2	0/1:39,24:32:63:0.381:2
chr1	144871829	rs111761861	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,23:28:95:0.242:2	./.	./.	./.
chr1	144873887	rs1699787	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,76:32:185:0.413:2	0/1:68,52:32:120:0.433:2	0/1:10,9:32:19:0.474:2	0/1:100,85:32:185:0.459:2	0/1:95,85:32:180:0.472:2	0/1:106,81:31:187:0.433:2	0/1:101,83:31:184:0.451:2	0/1:96,85:31:181:0.470:2	0/1:88,78:33:166:0.470:2	0/1:99,83:31:182:0.456:2	0/1:106,75:32:181:0.414:2
chr1	144874760	rs1610774	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,74:33:168:0.440:2	0/1:67,57:33:124:0.460:2	0/1:13,22:33:35:0.629:2	0/1:103,95:32:198:0.480:2	0/1:117,80:33:197:0.406:2	0/1:95,81:32:176:0.460:2	0/1:99,100:32:199:0.503:2	0/1:100,95:32:195:0.487:2	0/1:108,73:34:181:0.403:2	0/1:81,75:32:156:0.481:2	0/1:96,77:32:173:0.445:2
chr1	144874815	rs1778155	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,35:29:197:0.178:2	./.	0/1:94,97:29:191:0.508:2	0/1:93,76:28:169:0.450:2	./.	0/1:128,35:28:163:0.215:2	0/1:108,76:28:184:0.413:2
chr1	144875979	rs71664005	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,16:32:66:0.242:2	./.	./.	./.	./.	./.	0/1:102,23:33:125:0.184:2
chr1	144877176	rs2762875	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,71:34:186:0.382:2	0/1:94,100:32:194:0.515:2	0/1:15,20:32:35:0.571:2	0/1:105,85:33:190:0.447:2	0/1:107,91:32:198:0.460:2	0/1:123,75:32:198:0.379:2	0/1:110,83:33:193:0.430:2	0/1:115,82:32:197:0.416:2	0/1:105,87:34:192:0.453:2	0/1:110,82:33:192:0.427:2	0/1:107,78:33:185:0.422:2
chr1	144879090	rs1778120	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,26:33:94:0.277:2	0/1:68,38:33:106:0.358:2	./.	0/1:73,20:32:93:0.215:2	0/1:100,21:34:121:0.174:2
chr1	144879264	rs2798901	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,41:30:71:0.577:2	0/1:23,21:28:44:0.477:2	0/1:7,12:31:19:0.632:2	0/1:35,22:31:57:0.386:2	0/1:13,39:28:52:0.750:2	0/1:40,29:29:69:0.420:2	0/1:0,46:29:46:1.00:2	0/1:1,90:29:91:0.989:2	0/1:56,37:30:93:0.398:2	0/1:20,30:30:50:0.600:2	0/1:0,96:29:96:1.00:2
chr1	144879339	rs145959230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.	./.	./.	./.
chr1	144879375	rs1747958	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,39:30:73:0.534:2	0/1:25,31:29:56:0.554:2	0/1:3,12:29:15:0.800:2	0/1:39,44:30:83:0.530:2	0/1:43,31:28:74:0.419:2	0/1:52,54:29:106:0.509:2	0/1:48,35:30:83:0.422:2	0/1:67,49:30:116:0.422:2	0/1:52,52:31:104:0.500:2	0/1:38,38:29:76:0.500:2	0/1:70,66:29:136:0.485:2
chr1	144879485	rs113467089	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,23:32:73:0.315:2	./.	./.	./.
chr1	144880832	rs12568796	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:30:37:0.378:2	./.	./.	./.	0/1:96,83:29:179:0.464:2	0/1:112,72:29:184:0.391:2	./.	0/1:141,33:30:174:0.190:2	0/1:142,30:31:172:0.174:2
chr1	144881463	rs147815016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,32:32:199:0.161:2	0/1:101,36:32:137:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144882581	rs1699836	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,99:29:192:0.516:2	0/1:75,57:29:132:0.432:2	0/1:10,16:29:26:0.615:2	0/1:109,91:29:200:0.455:2	0/1:106,86:28:193:0.448:2	0/1:109,88:29:197:0.447:2	0/1:104,90:28:194:0.464:2	0/1:104,91:28:195:0.467:2	0/1:115,83:30:198:0.419:2	0/1:107,87:29:195:0.448:2	0/1:107,91:28:198:0.460:2
chr1	144882823	rs1698647	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,69:32:169:0.408:2	0/1:64,66:31:130:0.508:2	0/1:24,10:29:34:0.294:2	0/1:90,63:32:153:0.412:2	0/1:115,62:31:177:0.350:2	0/1:109,69:31:178:0.388:2	0/1:117,63:32:180:0.350:2	0/1:113,69:32:182:0.379:2	0/1:119,65:32:184:0.353:2	0/1:96,69:31:165:0.418:2	0/1:91,74:32:166:0.448:2
chr1	144886197	rs1698624	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,55:32:115:0.482:2	0/1:28,20:32:48:0.417:2	0/1:8,3:32:11:0.273:2	0/1:71,61:32:132:0.462:2	0/1:49,40:32:89:0.449:2	0/1:67,52:31:119:0.437:2	0/1:34,45:32:79:0.570:2	0/1:62,53:31:115:0.461:2	0/1:62,44:32:106:0.415:2	0/1:54,61:30:115:0.530:2	0/1:70,60:32:130:0.462:2
chr1	144906500	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,10:30:190:0.053:2	./.	0/1:189,9:28:198:0.045:2	./.	0/1:184,10:29:194:0.052:2	./.	./.
chr1	144906508	rs34169189	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,80:33:191:0.419:2	./.	0/1:105,79:33:185:0.429:2
chr1	144909956	rs638260	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,82:32:168:0.488:2	./.	./.	0/1:117,26:32:143:0.182:2	./.	./.	./.	./.
chr1	144912153	rs1628172	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:29:82:1.00:2	0/1:0,56:29:56:1.00:2	0/1:7,7:27:14:0.500:2	0/1:0,92:30:92:1.00:2	0/1:32,44:29:76:0.579:2	0/1:67,55:30:122:0.451:2	0/1:0,81:30:81:1.00:2	0/1:41,68:29:109:0.624:2	0/1:0,86:30:86:1.00:2	0/1:54,48:29:102:0.471:2	0/1:41,95:30:136:0.699:2
chr1	144912233	rs1629011	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,33:30:82:0.402:2	0/1:26,16:31:42:0.381:2	0/1:15,8:31:23:0.348:2	0/1:47,38:32:85:0.447:2	0/1:35,16:31:51:0.314:2	0/1:47,36:31:84:0.434:2	0/1:44,20:31:64:0.313:2	0/1:60,34:32:94:0.362:2	0/1:60,29:32:89:0.326:2	0/1:49,34:32:83:0.410:2	0/1:66,51:32:118:0.436:2
chr1	144915561	rs1778111	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,52:32:136:0.385:2	0/1:42,36:31:78:0.462:2	0/1:8,15:31:23:0.652:2	0/1:109,81:31:190:0.426:2	0/1:98,66:31:164:0.402:2	0/1:91,66:31:157:0.420:2	0/1:115,62:31:177:0.350:2	0/1:122,75:30:197:0.381:2	0/1:101,68:32:169:0.402:2	0/1:94,51:31:145:0.352:2	0/1:83,78:32:161:0.484:2
chr1	144915624	rs1778112	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,36:32:104:0.346:2	0/1:35,17:32:52:0.327:2	0/1:0,3:33:3:1.00:2	0/1:66,31:30:97:0.320:2	0/1:71,15:32:86:0.174:2	0/1:55,39:29:94:0.415:2	0/1:56,16:29:72:0.222:2	0/1:72,25:32:97:0.258:2	0/1:63,29:31:92:0.315:2	0/1:58,24:32:82:0.293:2	0/1:61,20:31:81:0.247:2
chr1	144916676	rs1698683	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,89:31:190:0.468:2	0/1:57,71:31:128:0.555:2	0/1:31,5:30:36:0.139:2	0/1:92,81:30:173:0.468:2	0/1:92,25:30:117:0.214:2	0/1:104,71:31:175:0.406:2	./.	./.	0/1:92,68:31:160:0.425:2	0/1:124,48:31:172:0.279:2	./.
chr1	144916748	rs1747930	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,43:32:89:0.483:2	0/1:27,27:31:54:0.500:2	./.	0/1:34,29:32:63:0.460:2	0/1:28,25:31:53:0.472:2	0/1:34,24:32:58:0.414:2	0/1:26,27:31:53:0.509:2	0/1:35,30:32:65:0.462:2	0/1:25,30:33:55:0.545:2	0/1:33,28:32:61:0.459:2	0/1:59,34:32:93:0.366:2
chr1	144917546	rs1698682	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,56:33:130:0.431:2	0/1:44,29:33:73:0.397:2	0/1:10,7:32:17:0.412:2	0/1:82,66:33:148:0.446:2	0/1:83,68:32:151:0.450:2	0/1:73,74:32:147:0.503:2	0/1:72,57:32:129:0.442:2	0/1:77,65:33:142:0.458:2	0/1:87,64:33:151:0.424:2	0/1:85,62:32:147:0.422:2	0/1:73,67:32:140:0.479:2
chr1	144917841	rs1698681	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,82:30:184:0.446:2	0/1:105,87:30:192:0.453:2	0/1:32,31:30:63:0.492:2	0/1:106,85:30:191:0.445:2	0/1:104,94:30:198:0.475:2	0/1:103,86:30:189:0.455:2	0/1:110,76:30:186:0.409:2	0/1:103,92:30:195:0.472:2	0/1:87,96:31:183:0.525:2	0/1:103,94:30:197:0.477:2	0/1:99,89:29:188:0.473:2
chr1	144918957	rs1061308	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,67:30:142:0.475:2	0/1:61,46:30:107:0.430:2	0/1:16,9:28:25:0.360:2	0/1:89,71:29:160:0.444:2	0/1:59,76:29:135:0.563:2	0/1:71,56:29:127:0.441:2	0/1:69,60:30:130:0.465:2	0/1:80,86:29:166:0.518:2	0/1:99,67:29:167:0.404:2	0/1:76,60:30:136:0.441:2	0/1:82,104:30:187:0.559:2
chr1	144921895	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,58:32:197:0.294:2
chr1	144921924	rs71664015	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,38:31:173:0.220:2	./.	./.	./.	./.	./.	0/1:157,28:32:185:0.151:2
chr1	144922523	rs2455994	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,67:33:130:0.515:2	0/1:46,32:32:78:0.410:2	0/1:8,3:31:11:0.273:2	0/1:114,72:32:186:0.387:2	0/1:100,19:32:119:0.160:2	0/1:97,85:31:182:0.467:2	./.	./.	0/1:110,74:33:184:0.402:2	0/1:118,32:33:151:0.213:2	./.
chr1	144922583	rs1359300	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,64:32:134:0.478:2	0/1:45,40:32:85:0.471:2	0/1:9,6:29:15:0.400:2	0/1:93,63:31:156:0.404:2	0/1:69,32:31:101:0.317:2	0/1:83,59:30:142:0.415:2	0/1:90,50:31:140:0.357:2	0/1:88,66:31:154:0.429:2	0/1:95,67:32:162:0.414:2	0/1:100,71:32:171:0.415:2	0/1:98,60:31:158:0.380:2
chr1	144930596	rs2762867	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,19:33:42:0.452:2	0/1:21,10:32:31:0.323:2	0/1:2,2:33:4:0.500:2	0/1:15,30:32:45:0.667:2	0/1:19,9:31:28:0.321:2	0/1:21,33:31:54:0.611:2	0/1:25,17:31:42:0.405:2	0/1:34,15:30:49:0.306:2	0/1:20,22:32:42:0.524:2	0/1:21,8:33:29:0.276:2	0/1:37,19:31:56:0.339:2
chr1	144930940	rs2147326	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,35:33:63:0.556:2	0/1:23,19:31:42:0.452:2	0/1:1,6:32:7:0.857:2	0/1:43,32:32:75:0.427:2	0/1:44,48:32:92:0.522:2	0/1:50,53:32:103:0.515:2	0/1:42,41:32:83:0.494:2	0/1:65,69:32:134:0.515:2	0/1:42,42:33:84:0.500:2	0/1:34,34:33:68:0.500:2	0/1:36,44:32:80:0.550:2
chr1	144931087	rs41315684	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:32:54:0.389:2	0/1:33,13:30:46:0.283:2	./.	0/1:32,10:30:43:0.238:2	0/1:60,15:30:76:0.200:2
chr1	144931100	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,7:33:44:0.159:2	./.	./.	./.	./.	./.	./.	./.
chr1	144931330	rs2762745	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,49:31:105:0.471:2	0/1:26,23:29:49:0.469:2	0/1:4,4:29:8:0.500:2	0/1:77,57:29:134:0.425:2	0/1:84,55:30:140:0.396:2	0/1:74,41:29:115:0.357:2	0/1:91,88:30:179:0.492:2	0/1:83,76:30:159:0.478:2	0/1:74,61:30:135:0.452:2	0/1:63,47:30:110:0.427:2	0/1:78,51:30:129:0.395:2
chr1	144931392	rs2798893	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,40:31:102:0.392:2	0/1:29,31:32:60:0.517:2	0/1:7,3:32:10:0.300:2	0/1:69,62:30:131:0.473:2	0/1:117,68:31:185:0.368:2	0/1:68,59:31:128:0.465:2	0/1:91,71:31:162:0.438:2	0/1:76,100:31:176:0.568:2	0/1:71,75:32:146:0.514:2	0/1:62,42:31:104:0.404:2	0/1:90,49:30:139:0.353:2
chr1	144931461	rs41315685	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	0/1:56,44:31:100:0.440:2	0/1:60,77:31:137:0.562:2	./.	0/1:64,26:31:90:0.289:2	0/1:94,23:32:117:0.197:2
chr1	144952207	rs3121544	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:158,35:32:193:0.181:2	0/1:172,24:33:196:0.122:2	./.	./.	0/1:170,28:32:198:0.141:2	0/1:142,54:33:196:0.276:2	0/1:175,21:32:196:0.107:2	0/1:152,43:32:195:0.221:2	0/1:174,22:34:196:0.112:2	./.	./.
chr1	144952220	rs139438772	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,56:29:192:0.295:2	0/1:140,47:31:188:0.251:2	0/1:81,28:30:109:0.257:2	0/1:147,46:29:193:0.238:2	0/1:140,56:30:196:0.286:2	0/1:142,54:31:196:0.276:2	0/1:120,75:30:196:0.385:2	0/1:116,80:30:196:0.408:2	0/1:145,46:30:191:0.241:2	0/1:149,44:30:193:0.228:2	0/1:134,50:31:185:0.272:2
chr1	144952255	rs148545794	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,27:30:194:0.140:2	0/1:177,17:27:194:0.088:2	./.	./.	./.
chr1	144952346	rs150616778	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,13:29:131:0.099:2	0/1:118,15:29:133:0.113:2	./.	./.	./.
chr1	144952569	rs376741952	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:95,13:33:108:0.120:2	0/1:58,10:32:68:0.147:2	./.	./.	0/1:104,28:32:132:0.212:2	0/1:111,52:31:163:0.319:2	./.	./.	./.	./.	./.
chr1	144952581	rs149078147	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,23:31:109:0.211:2	0/1:53,11:33:64:0.172:2	./.	0/1:146,34:33:180:0.189:2	0/1:110,34:32:144:0.236:2	0/1:119,36:33:155:0.232:2	0/1:95,19:31:114:0.167:2	0/1:141,32:32:173:0.185:2	0/1:146,28:34:175:0.161:2	0/1:101,19:33:120:0.158:2	0/1:128,36:33:166:0.220:2
chr1	144952641	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:31:16:0.188:2	./.	./.	./.	0/1:101,4:34:105:0.038:2	./.	0/1:110,9:33:119:0.076:2	./.	./.
chr1	144952687	rs200038610	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,8:32:49:0.163:2	0/1:25,5:31:30:0.167:2	./.	0/1:56,9:32:65:0.138:2	./.	./.	0/1:27,28:32:55:0.509:2	0/1:51,19:32:70:0.271:2	0/1:43,7:33:50:0.140:2	0/1:35,8:31:43:0.186:2	0/1:48,7:32:55:0.127:2
chr1	144955220	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,9:33:197:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr1	144955288	rs139573102	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:173,25:33:198:0.126:2	0/1:149,6:32:155:0.039:2	0/1:36,3:33:39:0.077:2	0/1:171,28:32:200:0.141:2	0/1:141,10:30:151:0.066:2	0/1:184,15:32:199:0.075:2	0/1:152,13:33:165:0.079:2	0/1:186,9:30:195:0.046:2	0/1:176,23:33:199:0.116:2	0/1:182,16:32:198:0.081:2	0/1:181,11:33:192:0.057:2
chr1	144994658	rs1664022	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,74:32:186:0.398:2	0/1:92,69:32:162:0.429:2	0/1:24,11:28:35:0.314:2	0/1:102,92:32:194:0.474:2	0/1:105,89:32:195:0.459:2	0/1:103,84:32:187:0.449:2	0/1:115,77:33:192:0.401:2	0/1:127,67:32:194:0.345:2	0/1:105,77:34:182:0.423:2	0/1:100,95:32:195:0.487:2	0/1:113,71:33:184:0.386:2
chr1	144994688	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,26:29:190:0.137:2
chr1	145015874	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:33:77:0.065:2	./.
chr1	145015877	rs77741369	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:76,15:31:91:0.165:2	0/1:48,4:31:52:0.077:2	./.	0/1:116,7:31:123:0.057:2	./.	./.	./.	0/1:98,14:31:112:0.125:2	0/1:96,37:32:133:0.278:2	0/1:57,17:31:74:0.230:2	0/1:99,17:30:116:0.147:2
chr1	145021089	rs1613515	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,14:33:103:0.136:2	0/1:44,5:31:49:0.102:2	./.	0/1:103,12:33:115:0.104:2	0/1:84,10:32:94:0.106:2	0/1:123,21:32:144:0.146:2	0/1:107,31:32:138:0.225:2	./.	./.	./.	0/1:107,38:32:145:0.262:2
chr1	145039562	rs1663878	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,26:30:62:0.419:2	0/1:23,12:30:35:0.343:2	0/1:8,5:29:13:0.385:2	0/1:58,42:29:100:0.420:2	0/1:92,55:30:147:0.374:2	0/1:75,64:29:141:0.460:2	0/1:78,58:30:137:0.426:2	0/1:88,51:29:139:0.367:2	0/1:49,52:29:101:0.515:2	0/1:61,30:30:92:0.330:2	0/1:47,34:30:82:0.420:2
chr1	145039594	rs111958438	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,10:32:142:0.070:2	./.	./.	./.	./.	0/1:94,12:32:106:0.113:2	0/1:105,10:33:115:0.087:2	./.
chr1	145039633	rs2762750	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,7:32:62:0.113:2	0/1:33,5:29:38:0.132:2	0/1:9,3:31:12:0.250:2	0/1:126,10:29:136:0.074:2	./.	./.	0/1:124,13:29:137:0.095:2	0/1:133,30:30:163:0.184:2	0/1:80,21:31:101:0.208:2	0/1:70,14:29:84:0.167:2	0/1:81,17:29:98:0.173:2
chr1	145074975	rs56128713	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,17:33:179:0.095:2	0/1:174,24:33:198:0.121:2	./.	./.	0/1:171,24:33:195:0.123:2
chr1	145075683	rs2762779	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,5:31:15:0.333:2	0/1:6,4:31:10:0.400:2	0/1:1,2:32:3:0.667:2	0/1:22,18:30:40:0.450:2	0/1:11,21:32:32:0.656:2	0/1:11,21:31:32:0.656:2	0/1:9,10:33:19:0.526:2	0/1:16,8:30:24:0.333:2	0/1:13,14:31:27:0.519:2	0/1:16,8:27:24:0.333:2	0/1:6,3:32:9:0.333:2
chr1	145075775	rs76199660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2
chr1	145075854	rs1663853	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,13:29:39:0.333:2	0/1:17,6:33:23:0.261:2	0/1:5,4:32:9:0.444:2	0/1:29,37:31:67:0.561:2	0/1:44,24:31:68:0.353:2	0/1:24,36:31:60:0.600:2	0/1:35,17:32:52:0.327:2	0/1:35,23:31:58:0.397:2	0/1:18,15:30:33:0.455:2	0/1:24,15:30:39:0.385:2	0/1:17,12:32:29:0.414:2
chr1	145103928	rs2596251	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,11:32:125:0.088:2	0/1:63,5:32:68:0.074:2	0/1:9,4:31:13:0.308:2	0/1:117,42:31:159:0.264:2	0/1:101,13:31:114:0.114:2	0/1:131,10:30:141:0.071:2	0/1:86,25:32:111:0.225:2	0/1:171,19:32:190:0.100:2	0/1:108,25:32:133:0.188:2	0/1:101,32:32:133:0.241:2	0/1:150,17:32:167:0.102:2
chr1	145103947	rs2794062	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,26:33:119:0.218:2	0/1:53,13:32:66:0.197:2	0/1:14,4:33:18:0.222:2	0/1:112,42:32:154:0.273:2	0/1:76,29:32:105:0.276:2	0/1:94,39:32:133:0.293:2	0/1:76,44:32:120:0.367:2	0/1:143,33:33:176:0.188:2	0/1:108,21:33:129:0.163:2	0/1:100,29:33:129:0.225:2	0/1:117,47:33:164:0.287:2
chr1	145109549	rs2596331	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,22:30:193:0.114:2	0/1:103,23:32:126:0.183:2	0/1:22,7:31:29:0.241:2	0/1:162,33:30:196:0.169:2	0/1:170,28:28:198:0.141:2	0/1:179,18:29:197:0.091:2	0/1:174,25:29:199:0.126:2	0/1:175,24:30:199:0.121:2	0/1:156,37:31:193:0.192:2	0/1:167,29:30:196:0.148:2	0/1:153,32:31:185:0.173:2
chr1	145109583	rs2794053	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,78:33:193:0.404:2	0/1:96,70:32:166:0.422:2	0/1:15,18:32:33:0.545:2	0/1:115,72:33:187:0.385:2	0/1:128,70:31:199:0.354:2	0/1:120,75:32:196:0.385:2	0/1:123,71:32:194:0.366:2	0/1:128,61:33:189:0.323:2	0/1:123,65:33:188:0.346:2	0/1:115,73:33:188:0.388:2	0/1:105,78:32:183:0.426:2
chr1	145109596	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,5:32:31:0.161:2	./.	./.	./.	0/1:161,27:32:188:0.144:2	./.	./.	./.	./.
chr1	145109661	rs2655551	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,30:31:189:0.159:2	0/1:119,26:32:145:0.179:2	0/1:19,7:30:26:0.269:2	0/1:144,50:31:194:0.258:2	0/1:130,32:31:162:0.198:2	0/1:162,31:30:193:0.161:2	0/1:162,29:31:193:0.152:2	0/1:149,43:31:192:0.224:2	0/1:148,44:31:192:0.229:2	0/1:140,35:32:175:0.200:2	0/1:148,39:31:187:0.209:2
chr1	145112414	rs2590131	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,26:32:153:0.170:2	0/1:53,21:30:74:0.284:2	0/1:20,8:31:28:0.286:2	0/1:121,34:30:155:0.219:2	0/1:86,22:29:108:0.204:2	0/1:132,44:29:176:0.250:2	0/1:119,22:30:141:0.156:2	0/1:136,52:30:188:0.277:2	0/1:127,20:30:147:0.136:2	0/1:98,41:30:139:0.295:2	0/1:146,41:29:188:0.219:2
chr1	145112420	rs2794041	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,30:32:145:0.207:2	0/1:57,13:32:70:0.186:2	0/1:24,4:31:28:0.143:2	0/1:124,31:32:155:0.200:2	0/1:88,27:31:115:0.235:2	0/1:144,38:31:183:0.209:2	0/1:105,28:32:133:0.211:2	0/1:154,30:32:184:0.163:2	0/1:104,41:32:145:0.283:2	0/1:116,25:32:141:0.177:2	0/1:162,29:32:191:0.152:2
chr1	145112428	rs2794040	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,22:32:145:0.152:2	0/1:59,18:31:77:0.234:2	0/1:18,7:31:25:0.280:2	0/1:121,33:31:154:0.214:2	0/1:95,25:30:120:0.208:2	0/1:143,42:31:185:0.227:2	0/1:120,22:32:142:0.155:2	0/1:141,48:31:189:0.254:2	0/1:140,22:31:162:0.136:2	0/1:107,44:31:151:0.291:2	0/1:144,38:32:182:0.209:2
chr1	145112468	rs200742331	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,13:33:145:0.090:2	./.	0/1:182,10:34:192:0.052:2	./.	./.	./.	./.
chr1	145112485	rs2794039	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,28:32:154:0.182:2	0/1:70,18:32:88:0.205:2	0/1:24,7:31:31:0.226:2	0/1:142,40:31:182:0.220:2	0/1:108,33:32:141:0.234:2	0/1:153,31:31:184:0.168:2	0/1:161,32:32:194:0.166:2	0/1:145,44:32:189:0.233:2	0/1:155,34:33:189:0.180:2	0/1:121,40:33:161:0.248:2	0/1:142,24:33:166:0.145:2
chr1	145112501	rs3871984	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,14:33:142:0.099:2	0/1:73,6:31:79:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	145115792	rs201239485	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,22:31:194:0.113:2	./.	./.	./.	./.	./.	./.	./.
chr1	145115810	rs2655557	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,99:29:199:0.497:2	0/1:66,67:28:133:0.504:2	0/1:13,10:30:23:0.435:2	0/1:112,85:29:197:0.431:2	0/1:106,92:28:198:0.465:2	0/1:100,94:29:194:0.485:2	0/1:116,78:28:194:0.402:2	0/1:97,95:29:192:0.495:2	0/1:105,93:29:198:0.470:2	0/1:112,84:29:196:0.429:2	0/1:111,79:29:190:0.416:2
chr1	145115820	rs2655558	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,53:30:195:0.272:2	0/1:112,32:30:144:0.222:2	0/1:24,5:31:29:0.172:2	0/1:152,42:31:194:0.216:2	0/1:161,36:30:197:0.183:2	0/1:149,48:30:197:0.244:2	0/1:160,38:31:198:0.192:2	0/1:152,41:30:194:0.212:2	0/1:156,40:32:196:0.204:2	0/1:148,50:30:198:0.253:2	0/1:145,44:31:189:0.233:2
chr1	145115883	rs7534444	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:31:29:0.172:2	./.	./.	./.	0/1:152,10:30:162:0.062:2	./.	0/1:175,9:33:184:0.049:2	./.	./.
chr1	145248851	rs201970415	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:181,13:32:194:0.067:2	0/1:182,13:32:195:0.067:2	0/1:184,16:30:200:0.080:2	0/1:176,20:31:196:0.102:2	0/1:188,11:31:199:0.055:2	0/1:175,25:31:200:0.125:2	0/1:176,21:32:197:0.107:2	0/1:189,6:31:195:0.031:2	0/1:181,13:32:194:0.067:2	0/1:185,8:31:193:0.041:2	0/1:182,12:32:194:0.062:2
chr1	145248876	rs200866084	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,14:34:198:0.071:2	0/1:180,15:33:196:0.077:2	0/1:181,18:33:199:0.090:2	0/1:164,32:32:196:0.163:2	0/1:175,23:33:198:0.116:2	0/1:160,35:33:195:0.179:2	0/1:168,28:35:196:0.143:2	0/1:189,8:31:197:0.041:2	0/1:177,18:34:195:0.092:2	0/1:181,15:33:196:0.077:2	0/1:183,14:34:197:0.071:2
chr1	145273302	rs201646101	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,24:33:190:0.126:2	0/1:175,23:31:198:0.116:2	0/1:143,25:33:169:0.149:2	0/1:160,32:33:192:0.167:2	0/1:176,15:31:191:0.079:2	0/1:165,30:32:195:0.154:2	0/1:179,15:31:194:0.077:2	0/1:184,15:32:199:0.075:2	0/1:168,23:33:191:0.120:2	0/1:185,10:33:195:0.051:2	0/1:168,20:31:188:0.106:2
chr1	145273345	rs75987820	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,15:33:184:0.082:2	0/1:165,29:31:194:0.149:2	0/1:164,31:32:195:0.159:2	0/1:164,31:32:195:0.159:2	0/1:170,24:32:194:0.124:2	0/1:154,39:31:193:0.202:2	0/1:162,30:33:192:0.156:2	0/1:183,13:31:196:0.066:2	0/1:167,23:34:190:0.121:2	0/1:179,13:33:192:0.068:2	0/1:178,15:33:194:0.078:2
chr1	145273366	rs140871032	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,18:31:191:0.094:2	./.	./.	./.	0/1:172,22:33:194:0.113:2	./.	./.
chr1	145273371	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:33:194:0.036:2	./.	./.	./.	./.
chr1	145273431	rs17421312	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,59:33:194:0.304:2	0/1:173,20:34:193:0.104:2	0/1:177,21:33:198:0.106:2	./.	./.	0/1:163,27:32:190:0.142:2
chr1	145281408	rs201164506	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,21:33:195:0.108:2	0/1:173,21:33:194:0.108:2	0/1:110,16:32:126:0.127:2	0/1:157,41:33:198:0.207:2	0/1:166,30:33:196:0.153:2	0/1:159,40:32:199:0.201:2	0/1:156,38:32:195:0.196:2	0/1:175,21:33:196:0.107:2	0/1:168,29:34:197:0.147:2	0/1:172,25:33:198:0.127:2	0/1:177,19:32:196:0.097:2
chr1	145281543	rs8002	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,55:30:180:0.306:2	0/1:141,46:31:187:0.246:2	0/1:112,41:30:153:0.268:2	0/1:145,25:30:170:0.147:2	0/1:153,25:31:178:0.140:2	0/1:143,38:30:181:0.210:2	0/1:138,39:31:177:0.220:2	0/1:138,52:31:190:0.274:2	0/1:156,16:30:172:0.093:2	0/1:136,44:31:180:0.244:2	0/1:131,43:30:174:0.247:2
chr1	145281613	rs12120756	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,17:31:187:0.091:2	0/1:164,27:31:191:0.141:2	0/1:111,11:31:122:0.090:2	0/1:159,34:31:193:0.176:2	0/1:179,18:31:197:0.091:2	0/1:158,38:31:196:0.194:2	0/1:164,30:32:194:0.155:2	0/1:185,13:32:198:0.066:2	0/1:147,33:32:180:0.183:2	0/1:175,16:31:191:0.084:2	0/1:167,26:32:193:0.135:2
chr1	145281633	rs28576333	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,21:28:191:0.110:2	0/1:160,28:31:188:0.149:2	0/1:108,12:31:121:0.100:2	0/1:161,31:30:192:0.161:2	0/1:168,27:30:195:0.138:2	0/1:146,39:30:185:0.211:2	0/1:142,47:31:189:0.249:2	0/1:177,17:32:194:0.088:2	0/1:145,37:30:182:0.203:2	0/1:172,15:29:187:0.080:2	0/1:157,26:32:184:0.142:2
chr1	145281637	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,10:31:193:0.052:2	./.
chr1	145281656	rs4649852	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,22:31:188:0.117:2	0/1:163,30:32:193:0.155:2	0/1:99,12:31:111:0.108:2	0/1:155,41:31:197:0.209:2	0/1:167,28:31:195:0.144:2	0/1:159,39:32:198:0.197:2	0/1:171,24:33:196:0.123:2	0/1:185,14:32:199:0.070:2	0/1:140,43:33:183:0.235:2	0/1:165,25:32:192:0.132:2	./.
chr1	145290409	rs77693292	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,8:32:167:0.048:2	0/1:172,10:32:182:0.055:2	0/1:64,5:29:69:0.072:2	0/1:164,12:31:176:0.068:2	0/1:176,7:33:183:0.038:2	0/1:170,6:31:176:0.034:2	./.	0/1:172,5:31:178:0.028:2	0/1:161,9:32:170:0.053:2	0/1:167,10:30:177:0.056:2	0/1:162,12:33:174:0.069:2
chr1	145290498	rs76101707	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,28:30:185:0.152:2	0/1:156,31:30:187:0.166:2	0/1:52,10:30:62:0.161:2	0/1:152,30:30:182:0.165:2	0/1:158,26:29:184:0.141:2	0/1:163,28:30:191:0.147:2	0/1:162,27:29:189:0.143:2	0/1:154,28:29:182:0.154:2	0/1:162,24:31:186:0.129:2	0/1:155,25:29:180:0.139:2	0/1:167,18:31:185:0.097:2
chr1	145298168	rs28610541	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:191,7:30:198:0.035:2	0/1:191,6:31:197:0.030:2	./.	0/1:191,7:31:198:0.035:2	0/1:186,9:29:196:0.046:2	./.	0/1:190,4:32:194:0.021:2	./.	0/1:190,7:33:197:0.036:2	0/1:187,7:32:195:0.036:2	./.
chr1	145298176	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	./.
chr1	145298180	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:192,6:27:198:0.030:2	./.	0/1:192,7:29:199:0.035:2	./.	./.	./.	./.	0/1:192,6:28:198:0.030:2	./.	./.
chr1	145298186	rs28507779	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,44:26:191:0.230:2	0/1:148,50:27:198:0.253:2	0/1:62,13:29:75:0.173:2	0/1:150,47:27:197:0.239:2	0/1:141,55:28:196:0.281:2	0/1:172,27:27:199:0.136:2	0/1:149,41:27:191:0.216:2	0/1:137,56:29:194:0.290:2	0/1:159,36:28:197:0.185:2	0/1:175,19:25:194:0.098:2	0/1:127,63:26:190:0.332:2
chr1	145298241	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,10:32:198:0.051:2	./.	./.	./.
chr1	145298281	rs201797121	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:177,14:31:191:0.073:2	0/1:174,23:29:197:0.117:2	0/1:177,19:30:197:0.097:2	./.	./.	./.	0/1:182,15:29:197:0.076:2	0/1:186,9:31:195:0.046:2	./.	0/1:184,11:29:195:0.056:2	0/1:181,12:29:193:0.062:2
chr1	145298349	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,23:33:192:0.120:2	0/1:182,14:32:196:0.071:2	0/1:99,14:31:113:0.124:2	0/1:180,19:31:199:0.095:2	0/1:168,31:31:199:0.156:2	0/1:160,31:32:191:0.162:2	0/1:173,19:32:192:0.099:2	0/1:177,20:32:197:0.102:2	0/1:164,27:33:191:0.141:2	0/1:177,17:32:194:0.088:2	./.
chr1	145298363	rs200081155	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:176,17:31:193:0.088:2	0/1:177,9:32:186:0.048:2	0/1:76,6:31:82:0.073:2	./.	./.	./.	0/1:174,22:31:196:0.112:2	0/1:182,18:31:200:0.090:2	./.	0/1:182,12:31:194:0.062:2	0/1:180,13:32:193:0.067:2
chr1	145311785	rs61816394	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,6:33:22:0.273:2	./.	./.	0/1:23,9:33:32:0.281:2	./.	0/1:0,9:32:9:1.00:2	0/1:20,3:33:23:0.130:2	0/1:27,4:32:32:0.129:2	0/1:0,6:34:6:1.00:2	0/1:0,12:31:12:1.00:2	./.
chr1	145311828	rs12135693	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,88:32:88:1.00:2
chr1	145311839	rs58277049	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:31:37:0.108:2	./.	0/1:63,5:33:68:0.074:2	./.	./.	./.	./.
chr1	145311869	rs184819447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,5:29:47:0.106:2	./.	./.	./.	./.	./.	./.
chr1	145311931	rs200450624	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,12:32:81:0.148:2	./.	./.	0/1:35,5:33:40:0.125:2	0/1:48,4:31:52:0.077:2	./.	./.	./.
chr1	145416938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,5:29:121:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	145417510	rs371123300	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,60:32:128:0.469:2	./.
chr1	145440096	rs6674773	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:32:28:0.429:2	./.
chr1	145475095	rs116099529	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,87:31:171:0.509:2	./.	./.	./.	./.	./.
chr1	145475172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.
chr1	145475255	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.
chr1	145475529	rs41302089	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,41:30:78:0.532:2	./.	./.	./.	./.	./.	./.
chr1	145508010	rs112273321	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,15:33:54:0.278:2	./.	./.	./.	./.	./.
chr1	145509217	rs12079762	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:33:34:0.559:2	./.
chr1	145509864	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:149,49:32:198:0.247:2	0/1:89,28:32:117:0.239:2	./.	0/1:149,49:32:198:0.247:2	0/1:91,61:32:152:0.401:2	./.	./.	./.	./.	0/1:150,49:32:200:0.246:2	./.
chr1	145510041	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,17:34:73:0.233:2	./.	./.
chr1	145510063	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:31:38:0.105:2	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.	0/1:38,16:32:54:0.296:2	./.
chr1	145510921	rs71664096	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,57:32:136:0.419:2	./.	./.	./.	./.	./.
chr1	145525139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.
chr1	145532549	rs1328584	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:33:96:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,116:34:116:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,97:32:97:1.00:2
chr1	145533175	rs11590105	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:32:59:0.492:2	./.	0/1:31,30:32:61:0.492:2	0/1:34,18:33:52:0.346:2	./.	0/1:24,17:34:41:0.415:2	0/1:24,19:32:43:0.442:2	./.
chr1	145536082	rs2274616	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,88:32:172:0.512:2	./.	./.	./.	./.	./.	./.
chr1	145541838	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,13:28:132:0.098:2	0/1:72,8:28:80:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	145542281	rs2282014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,14:29:30:0.467:2	./.	./.	./.	./.	./.	./.
chr1	145549383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr1	145558524	rs139514461	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	145561116	rs11578772	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:31:45:0.333:2	0/1:21,19:31:40:0.475:2	./.	0/1:40,44:33:84:0.524:2	0/1:26,40:32:66:0.606:2	./.
chr1	145561314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.
chr1	145561594	rs6670984	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,23:31:49:0.469:2	0/1:14,26:32:40:0.650:2	0/1:6,6:32:12:0.500:2	./.	0/1:1,43:31:44:0.977:2	./.	./.	./.	0/1:24,31:32:55:0.564:2	./.	./.
chr1	145562087	rs41315701	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	0/1:10,4:33:14:0.286:2	0/1:0,4:32:4:1.00:2	0/1:8,3:31:11:0.273:2	./.	0/1:12,6:30:18:0.333:2	./.	0/1:18,7:33:25:0.280:2	./.	./.	0/1:0,18:32:18:1.00:2
chr1	145562293	rs11579366	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,40:31:86:0.465:2	0/1:25,29:32:54:0.537:2	0/1:8,18:32:26:0.692:2	0/1:1,135:32:136:0.993:2	./.	0/1:1,139:31:140:0.993:2	0/1:2,156:32:158:0.987:2	0/1:2,156:31:158:0.987:2	0/1:63,41:33:104:0.394:2	0/1:0,94:32:94:1.00:2	0/1:1,94:31:95:0.989:2
chr1	145562590	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,7:14:30:0.233:2	./.	0/1:28,9:14:37:0.243:2	./.	./.	./.	./.
chr1	145562881	rs10910824	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	0/1:0,20:32:20:1.00:2	./.	./.	./.	0/1:15,7:32:22:0.318:2	./.	./.
chr1	145596970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.
chr1	145748341	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,17:32:107:0.159:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	145756605	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,6:26:191:0.031:2	0/1:185,6:33:191:0.031:2	./.	./.	./.	0/1:170,5:33:175:0.029:2	./.	./.
chr1	145763566	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,22:33:179:0.123:2	0/1:123,59:32:183:0.324:2	./.	./.	./.
chr1	145923081	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,63:33:134:0.470:2	0/1:62,65:32:127:0.512:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	146039079	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.
chr1	146039082	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:32:94:0.043:2	0/1:70,4:34:74:0.054:2	0/1:88,5:33:94:0.054:2	0/1:108,4:30:112:0.036:2	./.	./.	0/1:93,5:32:98:0.051:2
chr1	146039093	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,4:33:37:0.108:2	./.	./.	./.	0/1:64,4:28:68:0.059:2	0/1:86,5:25:91:0.055:2	./.	./.	./.	0/1:83,5:29:89:0.057:2
chr1	146039099	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,6:32:89:0.067:2	0/1:68,4:32:72:0.056:2	./.	./.	./.	0/1:64,4:34:68:0.059:2	./.	./.
chr1	146039133	rs373735426	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,6:30:77:0.078:2	./.	0/1:40,3:33:43:0.070:2	./.
chr1	146051099	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,5:32:23:0.217:2	./.	./.	./.	0/1:17,8:32:25:0.320:2	./.	./.
chr1	146051100	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,5:33:23:0.217:2	./.	./.	./.	0/1:18,8:32:26:0.308:2	./.	./.
chr1	146051113	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:36:24:0.125:2	./.	./.
chr1	146051179	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:32:21:0.143:2	./.	./.	./.	./.
chr1	146052567	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.
chr1	146052615	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:30:196:0.036:2	./.	0/1:182,13:31:197:0.067:2	0/1:189,6:32:195:0.031:2	./.	./.
chr1	146052627	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,14:27:198:0.071:2	0/1:189,6:30:195:0.031:2	./.	./.
chr1	146052668	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,8:32:196:0.041:2	./.	./.	./.
chr1	146052732	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,6:28:80:0.075:2	./.	./.	0/1:115,8:28:123:0.065:2	0/1:123,10:30:133:0.075:2	./.	0/1:141,12:30:153:0.078:2	0/1:140,4:31:144:0.028:2	0/1:99,6:31:106:0.057:2	0/1:140,8:29:148:0.054:2
chr1	146077140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr1	146077197	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,5:31:47:0.106:2	./.	./.	0/1:48,4:29:52:0.077:2	./.	./.	./.	./.
chr1	146465920	rs200052115	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,19:30:91:0.209:2	0/1:46,9:31:55:0.164:2	./.	0/1:86,10:31:96:0.104:2	0/1:71,28:30:99:0.283:2	0/1:111,13:30:124:0.105:2	0/1:83,29:31:112:0.259:2	0/1:104,29:31:133:0.218:2	0/1:104,27:31:131:0.206:2	0/1:50,27:32:77:0.351:2	0/1:113,20:31:133:0.150:2
chr1	146465964	rs192785498	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,17:33:106:0.160:2	0/1:50,3:33:53:0.057:2	./.	0/1:112,6:33:118:0.051:2	0/1:66,15:32:81:0.185:2	0/1:106,9:32:115:0.078:2	0/1:65,13:32:78:0.167:2	0/1:115,13:31:128:0.102:2	0/1:140,11:32:151:0.073:2	0/1:55,20:32:75:0.267:2	0/1:115,12:30:127:0.094:2
chr1	146465973	rs184225212	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,14:30:113:0.124:2	./.	./.	0/1:113,5:31:118:0.042:2	0/1:72,11:30:83:0.133:2	0/1:116,7:30:123:0.057:2	0/1:66,13:30:79:0.165:2	0/1:126,11:30:137:0.080:2	0/1:149,8:31:157:0.051:2	0/1:58,17:31:75:0.227:2	0/1:132,12:30:144:0.083:2
chr1	146465991	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,58:33:130:0.446:2	./.	./.	./.	./.	./.
chr1	146466083	rs200417581	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,7:31:113:0.062:2	0/1:90,5:30:95:0.053:2	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.
chr1	146466085	rs146618112	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,7:31:113:0.062:2	0/1:87,5:30:92:0.054:2	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	0/1:110,4:30:114:0.035:2
chr1	146466091	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:31:113:0.044:2
chr1	146672906	rs894469	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:32:147:1.00:2	0/1:1,73:31:74:0.986:2	0/1:0,19:32:19:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,110:30:110:1.00:2	0/1:1,115:32:116:0.991:2	0/1:1,120:31:121:0.992:2	0/1:1,117:33:118:0.992:2	0/1:0,114:32:114:1.00:2	0/1:0,158:32:159:1.00:2
chr1	146684095	rs58351438	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.	./.	./.	0/1:29,23:31:52:0.442:2
chr1	146714392	rs1890042	G	C,T	.	PASS	AC=4,3;AF=0.190,0.143;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/1:32:12:1.00:2	0/1:30:7:1.00:2	0/2:30:2:1.00:2	0/2:31:28:1.00:2	0/1:32:7:1.00:2	./.	0/2:29:23:1.00:2	0/1:31:27:1.00:2	./.	./.	./.
chr1	146726552	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	146728149	rs12119390	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,50:33:87:0.575:2	0/1:26,29:33:55:0.527:2	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.	0/1:49,36:33:85:0.424:2	./.	0/1:37,38:32:75:0.507:2	./.
chr1	146736092	rs4950315	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:3,35:32:38:0.921:2	0/1:25,18:31:43:0.419:2	0/1:25,21:30:46:0.457:2	0/1:0,37:31:37:1.00:2	./.	0/1:30,24:32:54:0.444:2	0/1:23,21:29:44:0.477:2	0/1:31,14:31:45:0.311:2
chr1	146740502	rs17356233	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,11:31:18:0.611:2	0/1:1,105:33:106:0.991:2	0/1:51,32:32:83:0.386:2	0/1:76,50:32:126:0.397:2	0/1:2,113:33:115:0.983:2	./.	0/1:65,63:33:128:0.492:2	0/1:48,41:33:89:0.461:2	0/1:87,69:32:156:0.442:2
chr1	146751782	rs7547279	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:33:79:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,97:31:97:1.00:2
chr1	146766122	rs45563244	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,61:30:130:0.469:2	./.
chr1	146767149	rs4950394	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,104:32:104:1.00:2
chr1	147091972	rs3820129	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,20:30:54:0.377:2	0/1:19,16:30:35:0.457:2	./.	./.	0/1:0,51:29:51:1.00:2	0/1:27,39:30:66:0.591:2	./.	0/1:2,70:30:72:0.972:2	0/1:38,24:30:62:0.387:2	./.	0/1:35,31:31:66:0.470:2
chr1	147092352	rs200395772	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,8:24:79:0.101:2	0/1:51,6:20:57:0.105:2	0/1:56,8:24:64:0.125:2	0/1:49,13:19:62:0.210:2	0/1:53,12:20:65:0.185:2	0/1:61,7:22:68:0.103:2	0/1:48,7:23:55:0.127:2	0/1:39,8:26:47:0.170:2
chr1	147092702	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	147096489	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr1	147119273	rs1344	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,42:32:100:0.424:2	0/1:37,27:31:64:0.422:2	./.	0/1:79,44:31:123:0.358:2	0/1:3,72:32:75:0.960:2	0/1:0,117:31:117:1.00:2	./.	0/1:1,154:32:155:0.994:2	0/1:68,59:32:127:0.465:2	0/1:78,42:31:120:0.350:2	0/1:0,147:32:147:1.00:2
chr1	147121977	rs6593795	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,78:31:78:1.00:2
chr1	147124310	rs2153463	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,26:30:65:0.400:2	0/1:24,29:28:53:0.547:2	0/1:10,9:30:19:0.474:2	0/1:53,51:30:104:0.490:2	0/1:0,95:30:95:1.00:2	0/1:0,104:30:104:1.00:2	./.	0/1:0,135:29:135:1.00:2	0/1:43,52:30:95:0.547:2	0/1:55,26:31:81:0.321:2	0/1:1,93:30:94:0.989:2
chr1	147131103	rs11800736	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:31:70:0.471:2	./.	./.	0/1:41,31:31:72:0.431:2	./.
chr1	147380886	rs3766503	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.	./.	./.
chr1	147464787	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,64:33:153:0.418:2	0/1:64,69:32:133:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	147580791	rs375834644	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:30:123:0.041:2	./.	./.	./.
chr1	147580859	rs371954812	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,9:33:126:0.071:2	./.	./.	0/1:125,4:33:129:0.031:2	./.
chr1	147580870	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,8:28:114:0.070:2	./.	./.	./.	./.
chr1	147580876	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,8:30:86:0.093:2	./.	./.	./.	./.	./.	./.
chr1	147592885	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	0/1:21,9:31:30:0.300:2	./.	./.
chr1	147592886	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.	./.	./.	0/1:22,9:31:31:0.290:2	./.	./.
chr1	147594401	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:30:190:0.037:2	./.	0/1:193,6:31:199:0.030:2	./.	./.	./.
chr1	147594413	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:30:196:0.036:2	./.	0/1:192,6:29:198:0.030:2	./.	./.	./.
chr1	147594518	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:129,7:31:136:0.051:2	./.	./.	./.	0/1:122,7:29:129:0.054:2	./.	0/1:122,8:29:130:0.062:2	0/1:150,19:30:169:0.112:2	0/1:131,11:31:142:0.077:2	./.	0/1:145,8:25:154:0.052:2
chr1	147618679	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.
chr1	147618721	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.
chr1	147618967	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:31:31:0.097:2	./.	./.
chr1	147954961	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:30:13:0.231:2	./.	./.	./.	./.
chr1	147955126	rs367921294	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:26:24:0.167:2	./.	./.	./.	./.	0/1:29,5:25:34:0.147:2	./.	./.	./.	./.	0/1:19,4:28:23:0.174:2
chr1	147955136	rs372484895	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,7:33:33:0.212:2	./.	./.	./.	./.	0/1:35,7:32:42:0.167:2	0/1:11,6:32:17:0.353:2	0/1:17,5:33:22:0.227:2	./.	./.	0/1:23,9:34:32:0.281:2
chr1	147955246	rs202020039	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,37:32:196:0.189:2	0/1:90,27:32:117:0.231:2	0/1:10,10:32:20:0.500:2	0/1:171,26:32:197:0.132:2	0/1:164,33:32:197:0.168:2	0/1:170,27:32:197:0.137:2	0/1:157,42:33:199:0.211:2	0/1:131,69:32:200:0.345:2	0/1:166,27:33:194:0.140:2	0/1:137,59:33:197:0.301:2	0/1:87,100:33:187:0.535:2
chr1	147955256	rs199950315	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,47:33:197:0.239:2	0/1:101,47:33:148:0.318:2	0/1:15,18:31:33:0.545:2	0/1:140,53:32:193:0.275:2	0/1:140,57:33:197:0.289:2	0/1:151,46:33:197:0.234:2	0/1:140,57:33:197:0.289:2	0/1:108,88:33:196:0.449:2	0/1:139,58:33:197:0.294:2	0/1:140,55:34:195:0.282:2	0/1:78,114:33:193:0.594:2
chr1	147955274	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:33:191:0.026:2
chr1	147955329	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:31:169:0.030:2
chr1	147955368	rs76383089	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,52:29:173:0.301:2	0/1:111,52:30:163:0.319:2	0/1:39,16:30:55:0.291:2	0/1:149,46:32:195:0.236:2	0/1:179,20:31:199:0.101:2	0/1:162,34:30:197:0.173:2	0/1:137,50:30:187:0.267:2	0/1:45,121:30:166:0.729:2	0/1:158,34:31:193:0.177:2	0/1:112,59:30:171:0.345:2	0/1:12,119:30:131:0.908:2
chr1	147955378	rs201998677	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,57:30:185:0.311:2	0/1:117,55:30:172:0.320:2	0/1:37,15:29:52:0.288:2	0/1:152,45:29:197:0.228:2	0/1:175,22:32:197:0.112:2	0/1:167,28:30:195:0.144:2	0/1:119,51:31:170:0.300:2	0/1:9,127:30:136:0.934:2	0/1:147,48:31:195:0.246:2	0/1:117,57:30:175:0.328:2	0/1:4,115:30:119:0.966:2
chr1	147955457	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,27:30:166:0.163:2	./.	./.	./.	./.	./.
chr1	147955504	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,12:24:71:0.169:2	./.	./.	./.	./.	./.	./.	./.
chr1	148004548	rs79370452	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,4:35:158:0.025:2	./.	0/1:152,6:32:158:0.038:2	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.
chr1	148004567	rs79517418	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,12:30:149:0.081:2	./.	./.	./.
chr1	148004568	rs78765201	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,13:29:150:0.087:2	./.	./.	./.
chr1	148004584	rs78822109	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,54:33:161:0.335:2	0/1:127,14:33:141:0.099:2	0/1:27,10:31:37:0.270:2	0/1:129,51:32:180:0.283:2	0/1:144,28:31:172:0.163:2	0/1:131,39:32:170:0.229:2	0/1:144,41:32:185:0.222:2	0/1:112,56:32:168:0.333:2	0/1:125,54:33:179:0.302:2	0/1:135,29:32:164:0.177:2	0/1:96,60:32:156:0.385:2
chr1	148004625	rs144324257	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,76:34:185:0.415:2	0/1:117,59:33:176:0.335:2	0/1:39,58:32:97:0.598:2	0/1:152,32:33:185:0.174:2	0/1:156,33:32:189:0.175:2	0/1:144,34:34:178:0.191:2	0/1:154,37:34:191:0.194:2	0/1:161,28:34:189:0.148:2	0/1:150,38:35:188:0.202:2	0/1:125,65:34:190:0.342:2	0/1:105,81:34:186:0.435:2
chr1	148004714	rs201202391	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,8:28:199:0.040:2	./.	./.	./.
chr1	148004732	rs77570381	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,13:32:152:0.086:2	0/1:115,9:32:124:0.073:2	./.	0/1:173,16:32:189:0.085:2	0/1:152,17:31:169:0.101:2	0/1:179,8:32:187:0.043:2	0/1:156,18:31:174:0.103:2	0/1:137,30:32:167:0.180:2	0/1:168,20:33:188:0.106:2	0/1:128,18:31:146:0.123:2	0/1:127,23:31:150:0.153:2
chr1	148004733	rs78149412	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,9:33:148:0.061:2	0/1:118,7:33:125:0.056:2	./.	0/1:182,13:33:195:0.067:2	0/1:151,17:32:168:0.101:2	0/1:182,7:33:189:0.037:2	0/1:159,18:31:177:0.102:2	0/1:143,25:33:168:0.149:2	0/1:173,18:34:191:0.094:2	0/1:135,18:32:153:0.118:2	0/1:131,20:33:151:0.132:2
chr1	148004749	rs77143638	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:141,5:30:146:0.034:2	./.	./.	./.	./.	./.	./.	0/1:145,6:30:151:0.040:2	./.	./.	./.
chr1	148009344	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	148009349	rs141981140	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:169,6:31:175:0.034:2	0/1:106,8:26:114:0.070:2	./.	0/1:188,9:30:197:0.046:2	0/1:181,15:27:196:0.077:2	0/1:184,14:28:198:0.071:2	./.	./.	0/1:179,18:30:197:0.091:2	0/1:182,10:31:193:0.052:2	./.
chr1	148009370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,8:31:154:0.052:2
chr1	148009371	rs200683178	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,74:31:195:0.379:2	0/1:82,46:31:128:0.359:2	0/1:15,16:31:31:0.516:2	0/1:159,32:31:191:0.168:2	0/1:151,43:31:194:0.222:2	0/1:165,29:31:194:0.149:2	0/1:145,52:31:197:0.264:2	0/1:83,107:32:190:0.563:2	0/1:145,45:33:190:0.237:2	0/1:124,65:32:189:0.344:2	0/1:81,71:32:153:0.467:2
chr1	148009375	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:30:193:0.031:2	./.	0/1:193,4:35:197:0.020:2	./.	./.
chr1	148009402	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:28:179:0.028:2	./.	0/1:196,4:32:200:0.020:2	./.	./.
chr1	148009510	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,29:30:70:0.414:2	0/1:27,22:31:50:0.449:2	0/1:4,8:31:12:0.667:2	0/1:80,56:31:136:0.412:2	0/1:56,14:31:70:0.200:2	0/1:94,37:31:131:0.282:2	0/1:72,8:31:80:0.100:2	0/1:24,18:29:42:0.429:2	0/1:80,38:31:119:0.322:2	0/1:78,28:30:106:0.264:2	./.
chr1	148009517	rs146731077	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.
chr1	148202037	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2
chr1	148202135	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:33:19:0.158:2	./.	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	./.	./.
chr1	148202160	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,5:30:39:0.128:2	./.	./.	./.	./.	./.	0/1:44,4:28:48:0.083:2	./.	./.	./.	./.
chr1	148202241	rs201764814	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,17:31:143:0.119:2	0/1:85,10:31:95:0.105:2	0/1:13,5:31:18:0.278:2	0/1:116,22:31:139:0.159:2	0/1:102,12:31:114:0.105:2	0/1:95,23:30:118:0.195:2	0/1:113,21:32:134:0.157:2	0/1:122,18:32:140:0.129:2	0/1:122,16:33:138:0.116:2	0/1:101,14:32:115:0.122:2	0/1:144,15:32:159:0.094:2
chr1	148202435	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,5:34:195:0.026:2	./.	0/1:192,7:32:199:0.035:2	./.	0/1:194,4:36:198:0.020:2	./.	./.
chr1	148202522	rs377474468	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:150,9:31:159:0.057:2	0/1:136,7:30:143:0.049:2	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	0/1:145,5:31:150:0.033:2	./.	0/1:140,6:31:146:0.041:2
chr1	148251874	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,19:32:152:0.125:2	0/1:95,19:32:114:0.167:2	./.	0/1:174,20:32:194:0.103:2	0/1:62,8:34:70:0.114:2	0/1:149,14:32:163:0.086:2	0/1:72,9:29:81:0.111:2	0/1:121,17:32:138:0.123:2	0/1:149,16:30:165:0.097:2	0/1:141,14:32:155:0.090:2	0/1:175,14:30:189:0.074:2
chr1	148251895	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr1	148251927	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.
chr1	148251971	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	./.	./.	./.	./.	./.
chr1	148251976	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:188,4:32:192:0.021:2	./.	./.	0/1:190,4:32:195:0.021:2	./.	0/1:192,5:32:197:0.025:2	0/1:187,5:33:192:0.026:2	./.	./.	0/1:193,6:32:199:0.030:2	0/1:190,4:35:195:0.021:2
chr1	148252041	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	0/1:187,4:33:191:0.021:2	0/1:183,6:28:189:0.032:2	./.	./.	./.
chr1	148252046	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,44:31:180:0.244:2	./.	./.	./.	./.
chr1	148252049	rs201353547	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,30:31:150:0.200:2	0/1:115,42:29:157:0.268:2	0/1:39,12:30:51:0.235:2	0/1:138,47:29:185:0.254:2	0/1:138,48:28:186:0.258:2	0/1:117,29:29:146:0.199:2	0/1:114,62:30:176:0.352:2	0/1:126,39:30:165:0.236:2	0/1:131,44:30:176:0.251:2	0/1:126,41:29:167:0.246:2	0/1:118,57:29:175:0.326:2
chr1	148252060	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:32:172:0.029:2	./.	./.	./.	./.	./.
chr1	148252105	rs374140805	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,23:32:154:0.149:2	./.	./.	./.
chr1	148252111	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,35:33:126:0.278:2	0/1:68,37:33:105:0.352:2	0/1:12,11:32:23:0.478:2	0/1:111,49:32:160:0.306:2	0/1:61,45:32:106:0.425:2	0/1:80,49:32:130:0.380:2	0/1:61,48:33:109:0.440:2	0/1:94,55:32:149:0.369:2	0/1:104,64:33:168:0.381:2	0/1:98,51:32:149:0.342:2	0/1:123,60:33:184:0.328:2
chr1	148341798	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:190,5:34:195:0.026:2	0/1:189,8:33:197:0.041:2	0/1:91,8:31:99:0.081:2	./.	./.	./.	0/1:186,13:33:199:0.065:2	0/1:188,9:32:197:0.046:2	./.	0/1:183,12:32:195:0.062:2	0/1:184,13:32:197:0.066:2
chr1	148341812	rs202096824	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,20:32:190:0.105:2	0/1:181,15:32:196:0.077:2	0/1:119,15:30:134:0.112:2	0/1:177,13:32:190:0.068:2	0/1:171,29:32:200:0.145:2	0/1:178,21:32:199:0.106:2	0/1:175,20:33:195:0.103:2	0/1:175,19:33:194:0.098:2	0/1:166,20:33:186:0.108:2	0/1:177,16:32:193:0.083:2	./.
chr1	148341880	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:191,5:31:196:0.026:2	./.	0/1:157,17:30:174:0.098:2	./.	./.	./.	0/1:182,16:32:198:0.081:2	0/1:188,7:32:195:0.036:2	./.	0/1:179,17:33:196:0.087:2	0/1:172,18:31:190:0.095:2
chr1	148341920	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,18:31:195:0.092:2	./.	./.	./.
chr1	148341975	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:25:194:0.036:2
chr1	148341981	rs4659311	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,48:27:194:0.247:2	0/1:137,56:27:193:0.290:2	0/1:50,17:28:67:0.254:2	0/1:158,37:28:195:0.190:2	./.	0/1:137,61:28:198:0.308:2	0/1:164,33:29:197:0.168:2	./.	0/1:131,66:29:197:0.335:2	0/1:160,39:29:199:0.196:2	./.
chr1	148594401	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.
chr1	148594404	rs143187884	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	148594455	rs1043751	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:178,16:32:194:0.082:2	0/1:171,23:32:194:0.119:2	0/1:36,3:32:39:0.077:2	0/1:192,5:33:197:0.025:2	0/1:176,21:31:197:0.107:2	0/1:190,6:33:196:0.031:2	0/1:181,15:32:196:0.077:2	0/1:190,8:32:198:0.040:2	0/1:185,9:33:194:0.046:2	0/1:179,12:33:191:0.063:2	0/1:184,7:32:191:0.037:2
chr1	148594489	rs138476210	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:178,13:32:191:0.068:2	0/1:168,28:33:196:0.143:2	0/1:74,4:31:78:0.051:2	./.	0/1:179,16:31:195:0.082:2	0/1:186,7:30:193:0.036:2	0/1:185,7:31:192:0.036:2	0/1:186,8:32:194:0.041:2	0/1:187,9:31:196:0.046:2	0/1:180,13:30:193:0.067:2	0/1:188,5:31:193:0.026:2
chr1	148594563	rs146229961	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:172,12:33:184:0.065:2	0/1:176,16:31:192:0.083:2	./.	0/1:177,14:32:191:0.073:2	0/1:179,15:31:194:0.077:2	0/1:181,9:31:190:0.047:2	0/1:182,8:33:190:0.042:2	0/1:190,6:30:196:0.031:2	0/1:178,12:31:191:0.063:2	0/1:176,14:32:190:0.074:2	0/1:176,15:32:191:0.079:2
chr1	148594604	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:170,4:33:174:0.023:2	0/1:139,7:29:146:0.048:2	./.	./.	0/1:121,5:32:126:0.040:2	0/1:181,7:30:188:0.037:2	./.	0/1:169,17:32:186:0.091:2	./.	0/1:148,4:33:152:0.026:2	0/1:167,4:34:171:0.023:2
chr1	148594620	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	./.	./.	./.
chr1	148594621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:152:0.026:2	./.	./.	./.
chr1	148644306	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,8:26:129:0.062:2	0/1:78,6:31:84:0.071:2	0/1:12,4:29:16:0.250:2	0/1:121,32:32:153:0.209:2	0/1:106,14:31:120:0.117:2	0/1:112,31:30:143:0.217:2	0/1:108,25:31:133:0.188:2	0/1:101,32:31:133:0.241:2	0/1:117,25:32:142:0.176:2	0/1:136,27:31:163:0.166:2	0/1:126,20:32:146:0.137:2
chr1	148644387	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:30:29:0.172:2	./.	0/1:34,7:30:41:0.171:2	0/1:41,5:27:46:0.109:2	0/1:41,4:29:45:0.089:2	0/1:32,4:32:36:0.111:2	./.	./.
chr1	148644408	rs200516190	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,10:31:39:0.256:2	./.	./.	./.	./.	0/1:14,9:32:23:0.391:2	0/1:13,14:32:27:0.519:2	0/1:17,21:32:38:0.553:2	0/1:17,12:35:29:0.414:2	0/1:18,9:32:27:0.333:2	0/1:24,8:30:32:0.250:2
chr1	148644510	rs374063587	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.
chr1	148756446	rs77353265	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.
chr1	148756448	rs201036679	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,55:32:104:0.529:2	0/1:30,39:32:69:0.565:2	0/1:6,11:31:17:0.647:2	0/1:38,65:32:103:0.631:2	0/1:35,34:32:69:0.493:2	0/1:70,107:32:177:0.605:2	0/1:43,26:31:69:0.377:2	0/1:40,33:32:73:0.452:2	0/1:25,41:32:66:0.621:2	0/1:30,43:31:73:0.589:2	0/1:42,72:31:114:0.632:2
chr1	148756450	rs77123384	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:31:184:0.027:2	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2
chr1	148756454	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,10:31:80:0.125:2	./.	./.	./.
chr1	148756456	rs200507592	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,16:33:123:0.130:2	0/1:66,9:34:75:0.120:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	148756499	rs201435207	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,97:33:146:0.664:2	0/1:22,63:33:85:0.741:2	0/1:5,14:32:19:0.737:2	0/1:34,105:33:139:0.755:2	0/1:20,56:32:76:0.737:2	0/1:44,135:33:179:0.754:2	0/1:43,61:32:104:0.587:2	0/1:39,84:32:123:0.683:2	0/1:27,96:33:123:0.780:2	0/1:34,93:33:127:0.732:2	0/1:40,99:32:139:0.712:2
chr1	148756515	rs74698828	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:29:142:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,145:30:147:1.00:2	0/1:0,69:30:69:1.00:2	0/1:147,36:30:183:0.197:2	0/1:7,99:30:106:0.934:2	0/1:0,127:30:127:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,134:30:134:1.00:2	0/1:1,132:30:134:0.992:2
chr1	148756518	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,17:30:158:0.108:2	0/1:94,10:31:104:0.096:2	0/1:20,3:30:23:0.130:2	0/1:135,22:30:157:0.140:2	0/1:97,7:26:104:0.067:2	0/1:176,10:30:186:0.054:2	0/1:122,18:30:140:0.129:2	0/1:122,18:30:140:0.129:2	0/1:131,10:30:141:0.071:2	0/1:139,18:31:157:0.115:2	0/1:128,19:31:147:0.129:2
chr1	148756607	rs373485062	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,82:32:175:0.469:2	0/1:90,81:32:171:0.474:2	0/1:23,27:31:50:0.540:2	0/1:115,70:32:185:0.378:2	0/1:110,75:31:185:0.405:2	0/1:93,68:31:161:0.422:2	0/1:114,60:31:174:0.345:2	0/1:150,38:31:188:0.202:2	0/1:111,65:33:176:0.369:2	0/1:102,83:32:185:0.449:2	0/1:88,98:32:186:0.527:2
chr1	148756648	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,15:33:120:0.125:2	0/1:87,6:32:93:0.065:2	0/1:20,6:33:26:0.231:2	0/1:108,11:32:119:0.092:2	./.	0/1:106,12:31:119:0.102:2	0/1:102,8:31:110:0.073:2	0/1:119,27:31:146:0.185:2	0/1:123,14:31:137:0.102:2	0/1:108,12:32:120:0.100:2	0/1:101,6:31:107:0.056:2
chr1	148756664	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,10:31:108:0.093:2	./.	./.	./.
chr1	148756665	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,10:30:107:0.093:2	./.	./.	./.
chr1	149553166	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,61:33:109:0.560:2	0/1:53,76:32:129:0.589:2	0/1:14,18:33:32:0.563:2	0/1:65,25:33:90:0.278:2	0/1:55,27:32:82:0.329:2	0/1:58,27:32:85:0.318:2	0/1:62,26:33:88:0.295:2	0/1:59,36:32:95:0.379:2	0/1:67,25:33:92:0.272:2	0/1:41,53:33:94:0.564:2	0/1:59,39:32:98:0.398:2
chr1	149553176	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,33:33:71:0.465:2	0/1:45,48:32:93:0.516:2	0/1:11,10:32:21:0.476:2	0/1:58,19:33:77:0.247:2	0/1:56,22:32:78:0.282:2	0/1:61,28:32:89:0.315:2	0/1:65,20:33:85:0.235:2	0/1:56,23:32:79:0.291:2	0/1:70,19:33:89:0.213:2	0/1:33,26:33:59:0.441:2	0/1:56,31:32:88:0.356:2
chr1	149553286	.	A	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,7:33:31:0.226:2	0/1:19,7:31:26:0.269:2	./.	0/1:24,4:28:28:0.143:2	0/1:23,6:32:29:0.207:2	0/1:28,8:31:36:0.222:2	0/1:35,6:32:41:0.146:2	0/1:16,6:30:22:0.273:2	0/1:23,8:30:31:0.258:2	0/1:19,4:30:23:0.174:2	0/1:17,11:32:28:0.393:2
chr1	149553296	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,6:26:24:0.250:2	./.	./.	0/1:23,5:26:28:0.179:2	0/1:27,4:25:31:0.129:2	0/1:36,6:26:42:0.143:2	./.	0/1:22,6:26:28:0.214:2	./.	0/1:15,5:25:20:0.250:2
chr1	149553298	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	0/1:17,3:30:21:0.150:2
chr1	149553732	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr1	149554409	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.
chr1	149554711	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	149554938	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,6:32:13:0.462:2	./.	0/1:0,2:31:2:1.00:2	0/1:40,7:32:47:0.149:2	0/1:26,4:31:30:0.133:2	0/1:25,12:31:37:0.324:2	./.	0/1:21,6:32:27:0.222:2	./.	./.	0/1:33,9:32:43:0.214:2
chr1	149555240	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:36:5:0.400:2	./.	./.
chr1	149555517	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr1	149555518	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.
chr1	149555888	rs201662775	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	0/1:9,3:32:12:0.250:2
chr1	149555927	rs200117848	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,3:33:4:0.750:2	0/1:2,3:31:5:0.600:2	./.	0/1:18,4:32:22:0.182:2	./.	0/1:17,7:32:24:0.292:2	./.	./.	0/1:10,4:33:14:0.286:2	0/1:11,4:33:15:0.267:2	0/1:10,6:33:16:0.375:2
chr1	149555945	rs201280906	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,4:34:5:0.800:2	0/1:5,4:32:9:0.444:2	./.	0/1:19,4:29:23:0.174:2	0/1:5,3:32:8:0.375:2	0/1:18,8:31:26:0.308:2	./.	./.	0/1:11,5:33:16:0.313:2	0/1:11,4:33:15:0.267:2	0/1:8,6:34:14:0.429:2
chr1	149755621	rs138530098	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:32:180:0.034:2
chr1	149755780	rs74315310	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,82:30:198:0.414:2	./.	./.	./.
chr1	149759958	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	149761751	rs201094582	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,75:32:198:0.379:2	./.
chr1	149762918	rs202141131	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.	./.
chr1	149785080	rs200122276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,5:31:81:0.062:2	./.	./.	./.	./.
chr1	149804940	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,31:32:175:0.177:2	./.	./.	./.	./.	./.
chr1	149812390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	149813886	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,32:31:181:0.178:2	0/1:148,41:30:189:0.217:2	./.	./.	./.	./.	./.	./.	0/1:165,29:30:195:0.149:2	./.	./.
chr1	149814083	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:106,35:32:142:0.248:2	0/1:96,26:32:122:0.213:2	0/1:21,15:31:36:0.417:2	./.	./.	./.	./.	0/1:94,49:32:143:0.343:2	./.	./.	./.
chr1	149822752	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:29:60:0.067:2	./.	./.	./.	./.
chr1	149822863	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:147,35:32:182:0.192:2	0/1:86,32:32:118:0.271:2	0/1:16,21:32:37:0.568:2	./.	./.	./.	./.	0/1:135,57:32:192:0.297:2	./.	./.	./.
chr1	149823060	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,33:30:190:0.174:2	0/1:145,47:30:193:0.245:2	./.	./.	./.	./.	./.	./.	0/1:156,41:30:197:0.208:2	./.	./.
chr1	149823080	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,71:31:179:0.397:2	0/1:94,79:31:173:0.457:2	./.	./.	./.	./.	./.	./.	0/1:99,89:31:188:0.473:2	./.	./.
chr1	149824390	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,6:32:78:0.077:2	./.	./.	0/1:80,5:27:85:0.059:2	0/1:136,7:32:143:0.049:2	0/1:117,6:32:123:0.049:2	./.	./.	./.	./.	./.
chr1	149824730	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,49:29:193:0.254:2	0/1:115,32:31:147:0.218:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	149824731	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,89:31:189:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr1	149825146	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.
chr1	149825493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.
chr1	149825517	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,53:30:127:0.417:2	0/1:38,27:31:65:0.415:2	./.	./.	./.	./.	./.	./.	0/1:94,85:30:179:0.475:2	./.	./.
chr1	149825621	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:96,86:31:182:0.473:2	0/1:56,33:32:89:0.371:2	./.	./.	./.	./.	./.	0/1:186,6:31:192:0.031:2	0/1:91,104:31:195:0.533:2	./.	./.
chr1	149857816	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:31:58:0.069:2	0/1:38,5:30:43:0.116:2	0/1:34,6:30:40:0.150:2	./.	0/1:60,6:28:66:0.091:2	./.	./.	./.
chr1	149857837	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2
chr1	149857843	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:29:27:0.148:2
chr1	149857957	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,5:28:44:0.114:2	./.	0/1:94,6:29:100:0.060:2	./.	./.	0/1:76,5:29:81:0.062:2	./.	0/1:85,6:30:91:0.066:2	./.	0/1:64,4:30:68:0.059:2
chr1	149857992	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	149858213	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,7:32:71:0.099:2	./.	./.
chr1	149858542	rs144294903	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.	./.	0/1:114,5:32:119:0.042:2	./.	./.	./.
chr1	149858596	rs201558423	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:54,4:34:58:0.069:2	./.	./.	./.	./.	./.	./.	0/1:62,5:33:67:0.075:2	./.	./.	./.
chr1	149858653	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,7:29:30:0.233:2	./.	./.	0/1:21,4:27:25:0.160:2	0/1:24,5:31:29:0.172:2	0/1:34,10:30:44:0.227:2	./.	./.	0/1:16,5:31:21:0.238:2	./.	0/1:12,3:30:15:0.200:2
chr1	149858683	rs111633198	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,8:30:69:0.116:2	./.	./.	0/1:113,4:32:117:0.034:2	0/1:129,7:30:136:0.051:2	0/1:118,11:30:129:0.085:2	./.	./.	0/1:87,6:32:93:0.065:2	./.	./.
chr1	149858698	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:85,6:29:91:0.066:2	./.	./.	./.	0/1:178,9:29:188:0.048:2	0/1:168,11:28:179:0.061:2	./.	./.	0/1:118,6:32:124:0.048:2	./.	0/1:84,6:31:90:0.067:2
chr1	149858848	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:128,7:29:135:0.052:2	0/1:78,6:33:84:0.071:2	./.	./.	./.	./.	0/1:187,7:31:194:0.036:2	0/1:185,8:32:193:0.041:2	0/1:188,4:34:192:0.021:2	./.	0/1:152,7:34:159:0.044:2
chr1	149876665	rs13067	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,93:29:187:0.497:2	./.	./.	./.	./.	./.
chr1	149898292	rs115070660	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,31:32:80:0.388:2	./.	0/1:51,23:33:74:0.311:2
chr1	149899137	rs201447834	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,6:31:78:0.077:2	./.	./.	./.
chr1	149906380	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.
chr1	149906413	rs11205303	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:76,62:28:138:0.449:2	0/1:34,30:27:64:0.469:2	./.	./.	0/1:71,91:28:163:0.562:2	0/1:92,63:28:156:0.406:2	0/1:1,185:30:186:0.995:2	0/1:1,159:29:160:0.994:2	./.	0/1:78,63:30:141:0.447:2	./.
chr1	149907244	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.
chr1	149908108	rs1868992	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,10:31:25:0.400:2	0/1:10,18:31:28:0.643:2	./.	0/1:0,42:32:42:1.00:2	./.	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	0/1:36,24:32:60:0.400:2
chr1	149916098	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.
chr1	149916261	rs184817451	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,53:31:90:0.589:2	./.	./.	./.	./.
chr1	149920922	rs192984583	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,28:30:53:0.528:2	./.	./.	./.	./.	./.	./.	./.
chr1	149943079	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.
chr1	150054908	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.
chr1	150116937	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.	./.
chr1	150199027	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,5:27:134:0.037:2	./.	./.	./.	./.	./.	./.
chr1	150199042	rs28594165	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,11:26:81:0.136:2	./.	./.	./.	./.	./.	./.
chr1	150199045	rs28460085	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,11:31:79:0.139:2	./.	./.	./.	./.	./.	./.
chr1	150199051	rs374949854	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,11:34:115:0.096:2	./.	./.	./.	./.	./.	./.
chr1	150199057	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:36:107:0.037:2	./.	./.	./.	./.	./.	./.
chr1	150199123	rs7522034	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,14:30:31:0.452:2	0/1:8,5:31:13:0.385:2	./.	0/1:0,18:31:18:1.00:2	0/1:14,10:30:24:0.417:2	0/1:13,7:32:20:0.350:2	0/1:12,11:32:23:0.478:2	0/1:16,13:31:29:0.448:2	./.	0/1:14,9:31:23:0.391:2	0/1:0,27:31:28:1.00:2
chr1	150234657	rs34714364	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	0/1:22,37:30:59:0.627:2	./.	./.	./.	0/1:0,63:31:63:1.00:2	./.	./.
chr1	150239849	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.
chr1	150280550	rs4845	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,63:32:118:0.534:2	./.	./.	./.
chr1	150280621	rs144788909	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:31:71:0.451:2	./.	./.	./.	./.	./.
chr1	150310716	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.
chr1	150310727	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.
chr1	150310752	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:196:0.021:2	./.	./.	./.
chr1	150312947	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:34:26:0.231:2	./.	./.	./.	./.
chr1	150337289	rs72696841	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150416748	rs200294305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:32:27:0.593:2	./.
chr1	150429944	rs41273537	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150443698	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.	./.
chr1	150444597	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,29:31:48:0.604:2	./.	./.	./.	./.	./.	./.	./.
chr1	150445276	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.
chr1	150481982	rs75772057	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,30:32:42:0.714:2	./.	./.	./.	./.	./.
chr1	150483355	rs3737240	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,43:32:43:1.00:2	0/1:0,30:31:30:1.00:2	0/1:6,4:32:10:0.400:2	./.	0/1:51,29:31:80:0.363:2	0/1:59,30:31:89:0.337:2	./.	./.	0/1:0,57:31:57:1.00:2	./.	./.
chr1	150484004	rs11801190	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,48:30:90:0.533:2	./.	./.	./.
chr1	150484273	rs149844916	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,4:35:167:0.024:2	./.	./.	./.	./.	./.	./.
chr1	150484987	rs13294	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,62:33:62:1.00:2	0/1:2,36:33:38:0.947:2	0/1:5,3:33:8:0.375:2	./.	0/1:55,41:32:96:0.427:2	0/1:38,35:32:73:0.479:2	./.	./.	0/1:0,87:33:87:1.00:2	./.	./.
chr1	150524786	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,13:16:126:0.103:2	./.
chr1	150525425	rs41317513	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2
chr1	150526044	rs41317515	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,42:31:43:0.977:2	0/1:0,25:32:25:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,67:32:67:1.00:2	./.	0/1:2,85:32:87:0.977:2	0/1:3,59:31:62:0.952:2	0/1:0,68:33:68:1.00:2	0/1:27,35:32:62:0.565:2	./.
chr1	150526406	rs6681639	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:28,27:30:55:0.491:2	./.	./.	./.	0/1:21,26:31:47:0.553:2	./.	./.
chr1	150531008	rs10888382	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,54:29:55:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,62:30:62:1.00:2	0/1:27,34:29:61:0.557:2	0/1:0,35:29:35:1.00:2
chr1	150531050	rs10749657	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,61:29:61:1.00:2	0/1:32,30:31:62:0.484:2	0/1:0,47:30:48:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,49:31:49:1.00:2	0/1:19,20:29:39:0.513:2	0/1:0,33:28:33:1.00:2
chr1	150531160	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:29:27:0.333:2	./.	./.	./.
chr1	150531170	rs10749658	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,18:32:18:1.00:2
chr1	150531905	rs150225445	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2	./.	./.
chr1	150532583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:30:89:0.045:2	./.
chr1	150534368	rs12116492	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,17:28:19:0.895:2	./.	0/1:3,122:29:125:0.976:2	./.	0/1:7,120:29:127:0.945:2	0/1:2,164:29:166:0.988:2	0/1:0,127:30:127:1.00:2	0/1:63,51:30:114:0.447:2	./.
chr1	150550718	rs74848639	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,7:19:99:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150621165	rs186291546	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:33:182:0.473:2
chr1	150679033	rs1336900	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,49:31:50:0.980:2	0/1:0,25:31:25:1.00:2	./.	0/1:0,37:30:37:1.00:2	./.	0/1:1,39:29:40:0.975:2	./.	./.	./.	0/1:13,21:31:34:0.618:2	0/1:34,29:31:63:0.460:2
chr1	150720261	rs140408537	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,68:31:153:0.444:2	./.	./.
chr1	150727539	rs2230061	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,91:32:94:0.968:2	0/1:2,49:32:51:0.961:2	./.	0/1:2,108:32:110:0.982:2	./.	0/1:0,99:31:99:1.00:2	./.	./.	./.	0/1:33,44:31:77:0.571:2	0/1:57,50:32:108:0.467:2
chr1	150771703	rs10788796	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:29:97:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,132:29:132:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,127:29:127:1.00:2	0/1:0,156:30:156:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,153:29:153:1.00:2
chr1	150779755	rs6587522	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,108:32:108:1.00:2	0/1:3,74:32:77:0.961:2	0/1:0,106:32:106:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,136:32:136:1.00:2
chr1	150779845	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.
chr1	150788792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150807020	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.
chr1	150808889	rs2228099	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:2,37:33:39:0.949:2	./.	0/1:0,78:32:78:1.00:2	./.	0/1:0,96:32:96:1.00:2	./.	./.	./.	0/1:35,33:32:68:0.485:2	0/1:52,33:33:85:0.388:2
chr1	150917624	rs186820437	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,60:31:104:0.577:2	./.	./.	./.	./.	./.
chr1	150923099	rs17661357	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,17:32:27:0.630:2	./.
chr1	150939910	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.
chr1	150940357	rs371338966	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,44:31:45:0.978:2	0/1:2,38:31:40:0.950:2	./.	0/1:0,53:31:53:1.00:2	./.	0/1:0,50:31:50:1.00:2	./.	./.	./.	0/1:32,24:32:56:0.429:2	0/1:28,21:32:49:0.429:2
chr1	150940358	rs59988025	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,44:30:45:0.978:2	0/1:2,38:31:40:0.950:2	./.	0/1:0,53:29:53:1.00:2	./.	0/1:0,50:30:50:1.00:2	./.	./.	./.	0/1:31,24:31:55:0.436:2	0/1:28,21:31:49:0.429:2
chr1	150940622	rs185209926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:31:35:0.457:2	./.	./.	./.
chr1	150940625	rs267738	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,9:29:25:0.360:2	./.	./.	./.	0/1:17,9:27:26:0.346:2	./.	./.
chr1	150955582	rs267731	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:29:58:0.500:2	./.	./.
chr1	150958836	rs267733	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,26:31:65:0.400:2	./.	./.	./.	0/1:34,45:33:79:0.570:2	./.	./.
chr1	150960350	rs17850000	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,40:32:73:0.548:2	./.	./.	0/1:44,36:33:80:0.450:2	0/1:0,59:32:59:1.00:2	0/1:47,25:32:72:0.347:2
chr1	150970577	rs2925741	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,23:32:23:1.00:2
chr1	150974971	rs41310885	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150975095	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.
chr1	150975108	rs771205	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:30:54:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,13:30:13:1.00:2	0/1:1,90:29:91:0.989:2	0/1:1,47:29:48:0.979:2	0/1:0,68:29:68:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,99:30:99:1.00:2	0/1:1,92:31:93:0.989:2	0/1:0,47:30:48:1.00:2	0/1:0,90:31:90:1.00:2
chr1	150999737	rs11204762	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,75:33:167:0.449:2	./.	./.	./.
chr1	151006539	rs3738476	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:31:113:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,20:31:20:1.00:2	0/1:3,122:31:125:0.976:2	0/1:1,142:31:143:0.993:2	0/1:1,151:30:152:0.993:2	0/1:103,71:31:174:0.408:2	0/1:93,65:30:158:0.411:2	0/1:107,78:32:185:0.422:2	0/1:72,63:31:135:0.467:2	0/1:85,69:31:154:0.448:2
chr1	151015564	rs61751620	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,86:32:172:0.500:2	./.	./.
chr1	151019180	rs6587553	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:33:69:0.986:2	0/1:0,32:32:32:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,70:33:70:1.00:2	0/1:49,31:33:80:0.388:2	0/1:46,51:33:97:0.526:2	./.	0/1:38,31:32:69:0.449:2	0/1:0,77:33:77:1.00:2
chr1	151020761	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.
chr1	151040435	rs15740	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,54:32:54:1.00:2	0/1:25,20:32:45:0.444:2	0/1:30,18:32:48:0.375:2	./.	0/1:26,12:32:38:0.316:2	0/1:0,48:32:48:1.00:2
chr1	151105824	rs4971006	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:29:4:1.00:2	0/1:0,5:28:5:1.00:2	./.	0/1:0,13:28:13:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,10:27:10:1.00:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.
chr1	151105898	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.
chr1	151108137	rs4971007	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,139:31:141:0.993:2	0/1:1,134:32:135:0.993:2	0/1:0,102:32:103:1.00:2	0/1:99,67:32:166:0.404:2	0/1:104,83:32:187:0.444:2	./.	0/1:53,56:33:109:0.514:2	0/1:0,101:32:101:1.00:2
chr1	151110832	rs72708441	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,95:31:193:0.492:2	./.	0/1:112,80:32:192:0.417:2	0/1:98,96:31:194:0.495:2	./.	./.	0/1:61,62:30:123:0.504:2
chr1	151115017	rs74949844	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:32:35:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151144239	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:89:0.045:2	./.
chr1	151199860	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:35:44:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr1	151204766	rs148997378	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:33:74:0.405:2
chr1	151205086	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:169:0.024:2	./.	./.	./.
chr1	151206786	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:31:173:0.029:2	./.	./.	./.	./.	./.
chr1	151206789	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:32:176:0.028:2	./.	./.	./.	./.	./.
chr1	151206931	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:30:112:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151206932	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:28:65:0.062:2	./.	./.	./.	./.
chr1	151206934	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:29:112:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151206939	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.
chr1	151209063	rs12407426	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:79,4:31:83:0.048:2	0/1:3,69:31:72:0.958:2	0/1:48,50:31:98:0.510:2	0/1:0,59:31:59:1.00:2	0/1:1,67:31:68:0.985:2	./.	0/1:1,68:31:69:0.986:2	0/1:47,55:31:103:0.539:2
chr1	151209120	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	151215011	rs61729862	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	./.	./.	./.	./.	./.
chr1	151234714	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:31:150:0.033:2	./.	./.	./.	./.
chr1	151237929	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	0/1:190,5:28:195:0.026:2	./.	./.	./.	./.	./.
chr1	151238020	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,4:33:182:0.022:2	./.	./.	./.	./.	./.	./.
chr1	151239051	rs7489	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:28:6:1.00:2	./.	0/1:2,84:28:86:0.977:2	0/1:31,31:28:62:0.500:2	0/1:0,62:28:62:1.00:2	0/1:1,84:28:85:0.988:2	./.	0/1:1,52:28:54:0.981:2	0/1:44,24:27:68:0.353:2
chr1	151239751	rs201794751	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	0/1:186,7:31:193:0.036:2	./.	0/1:182,14:32:196:0.071:2	0/1:182,8:30:190:0.042:2	0/1:186,11:33:197:0.056:2	0/1:177,8:31:185:0.043:2
chr1	151239784	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,6:31:192:0.031:2	./.	./.	./.	./.	./.	./.
chr1	151254023	rs59912932	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,11:31:25:0.440:2	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.	./.	0/1:0,23:30:23:1.00:2	./.	./.
chr1	151254036	rs11587537	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:31:27:0.519:2	./.
chr1	151254041	rs3811406	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,13:28:30:0.433:2	0/1:11,7:31:18:0.389:2	0/1:0,2:27:2:1.00:2	./.	0/1:0,55:30:55:1.00:2	0/1:19,27:30:46:0.587:2	0/1:34,11:28:45:0.244:2	0/1:34,28:30:62:0.452:2	0/1:0,30:29:30:1.00:2	0/1:0,29:31:29:1.00:2	./.
chr1	151259043	rs2298265	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	./.	0/1:0,37:33:37:1.00:2	./.	./.
chr1	151259543	rs3748545	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,18:32:43:0.419:2	0/1:25,12:32:37:0.324:2	./.	./.	./.	./.	./.	./.	0/1:0,69:32:69:1.00:2	./.	./.
chr1	151260673	rs12745008	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,47:31:113:0.416:2	0/1:47,38:32:85:0.447:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151262355	rs61818002	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.	./.	./.	./.
chr1	151288172	rs1056847	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.	0/1:0,114:30:115:1.00:2	0/1:65,50:29:115:0.435:2	0/1:65,72:31:137:0.526:2	0/1:58,53:30:111:0.477:2	./.	0/1:0,114:31:114:1.00:2	./.
chr1	151288266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:30:141:0.028:2
chr1	151288391	rs1752379	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,27:27:27:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,80:28:80:1.00:2	0/1:0,60:29:60:1.00:2	0/1:1,60:28:61:0.984:2	0/1:0,60:28:60:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,67:28:67:1.00:2
chr1	151288881	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.
chr1	151315287	rs2233854	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,55:28:114:0.482:2	0/1:42,39:29:81:0.481:2	0/1:39,39:28:78:0.500:2	./.
chr1	151316161	rs1752386	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,76:32:76:1.00:2
chr1	151342263	rs41285000	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,76:31:158:0.481:2	./.	0/1:89,86:29:176:0.491:2
chr1	151372138	rs7172	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,36:31:69:0.522:2	0/1:29,10:31:39:0.256:2	0/1:0,5:31:5:1.00:2	0/1:0,73:30:74:1.00:2	0/1:31,14:30:45:0.311:2	0/1:0,60:30:60:1.00:2	0/1:4,39:30:43:0.907:2	0/1:2,78:31:80:0.975:2	0/1:1,58:31:59:0.983:2	0/1:68,27:31:95:0.284:2	0/1:0,73:31:74:1.00:2
chr1	151373003	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.
chr1	151374025	rs4603	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,21:32:51:0.412:2	0/1:15,16:32:31:0.516:2	./.	./.	0/1:25,26:31:51:0.510:2	./.	./.	./.	./.	0/1:24,38:32:62:0.613:2	./.
chr1	151374077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2
chr1	151378887	rs369572684	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,4:32:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr1	151380611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:33:52:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151400383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.
chr1	151496009	rs145912252	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151501841	rs12044926	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,29:33:79:0.367:2	./.	./.	./.	./.	./.	./.
chr1	151502966	rs144143337	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.
chr1	151506526	rs41272467	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:30:24:0.417:2	./.	./.	./.	0/1:92,100:30:192:0.521:2	./.	./.	./.	./.
chr1	151512895	rs3828054	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:31:13:0.385:2	./.	./.	./.	0/1:71,29:30:100:0.290:2	./.	./.	0/1:29,25:30:54:0.463:2	./.
chr1	151584751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr1	151733327	rs74228558	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:31:10:0.300:2
chr1	151733335	rs8480	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:33:20:0.650:2	0/1:3,5:33:8:0.625:2	./.	0/1:8,10:33:18:0.556:2	0/1:9,22:32:31:0.710:2	0/1:12,9:34:21:0.429:2	./.	0/1:5,4:31:9:0.444:2
chr1	151735576	rs7007	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,16:32:55:0.291:2	0/1:42,21:32:63:0.333:2	./.	0/1:32,11:31:43:0.256:2	./.	./.	./.	./.
chr1	151740666	rs2495397	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,68:34:68:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,87:33:87:1.00:2
chr1	151747970	rs11204885	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,69:32:155:0.445:2	0/1:70,70:33:140:0.500:2	./.	./.
chr1	151751274	rs17853082	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,59:32:92:0.641:2	./.	./.	./.	./.	./.	./.
chr1	151755425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:34:79:0.051:2
chr1	151786040	rs61754474	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,40:32:92:0.435:2	./.
chr1	151787406	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.
chr1	151787451	rs41263732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,81:31:163:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr1	151801951	rs4845606	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,38:32:77:0.494:2	0/1:33,16:31:49:0.327:2	./.	./.	./.	./.	./.	./.
chr1	151820298	rs6587624	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,98:32:99:1.00:2
chr1	151820324	rs6587625	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:1,28:32:29:0.966:2	0/1:6,4:32:10:0.400:2	0/1:0,79:32:79:1.00:2	0/1:1,57:32:58:0.983:2	./.	0/1:66,43:33:109:0.394:2	0/1:64,41:32:105:0.390:2	0/1:0,96:32:96:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,78:32:78:1.00:2
chr1	151825991	rs7556386	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,37:29:37:1.00:2	./.	./.	0/1:21,24:29:45:0.533:2	0/1:0,54:30:54:1.00:2	./.	0/1:0,50:29:50:1.00:2
chr1	151867560	rs3762427	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,92:32:95:0.968:2	0/1:1,39:32:40:0.975:2	0/1:0,13:31:13:1.00:2	0/1:4,83:32:87:0.954:2	0/1:4,71:31:75:0.947:2	0/1:3,120:31:123:0.976:2	0/1:47,43:32:90:0.478:2	0/1:3,112:32:115:0.974:2	0/1:5,109:33:114:0.956:2	./.	0/1:1,94:32:95:0.989:2
chr1	152057605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.
chr1	152059046	rs202091282	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,13:14:169:0.078:2
chr1	152079989	rs1131471	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:60,54:32:114:0.474:2	0/1:48,38:32:86:0.442:2	./.	./.	0/1:77,76:32:153:0.497:2	0/1:4,185:31:189:0.979:2	0/1:63,69:32:132:0.523:2	0/1:93,75:31:168:0.446:2	0/1:172,5:34:177:0.028:2	0/1:50,65:32:115:0.565:2	./.
chr1	152081362	rs182615256	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,29:32:65:0.446:2	./.	./.	./.	./.	./.	./.
chr1	152081669	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.
chr1	152081921	rs2496253	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,79:32:143:0.552:2	0/1:35,40:31:75:0.533:2	./.	./.	0/1:70,61:32:131:0.466:2	0/1:3,134:32:137:0.978:2	0/1:104,81:32:185:0.438:2	0/1:108,78:32:186:0.419:2	./.	0/1:66,57:31:123:0.463:2	./.
chr1	152082257	rs369695249	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	0/1:70,7:28:77:0.091:2
chr1	152082304	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.
chr1	152082320	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,4:30:89:0.045:2	./.	./.	./.	./.	./.	./.
chr1	152082437	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.	./.	./.
chr1	152082449	rs199978971	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:30:88:0.057:2	./.	./.	0/1:57,3:33:60:0.050:2	./.
chr1	152082484	rs377407296	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,7:27:84:0.083:2	./.	./.	./.	./.
chr1	152083325	rs11803731	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:6,13:31:19:0.684:2	0/1:8,8:31:16:0.500:2	0/1:0,2:31:2:1.00:2	./.	0/1:16,15:30:31:0.484:2	./.	0/1:4,6:30:10:0.600:2	0/1:11,9:28:21:0.450:2	./.	0/1:9,9:30:18:0.500:2	0/1:0,8:31:8:1.00:2
chr1	152083372	rs201873363	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,7:20:50:0.140:2	./.	./.	./.
chr1	152083806	rs200947543	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	./.	./.	0/1:14,15:27:29:0.517:2	./.
chr1	152084213	rs199978168	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,13:29:93:0.140:2	./.	0/1:50,10:29:60:0.167:2	./.	0/1:46,7:33:53:0.132:2	./.
chr1	152084216	rs201131683	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,13:31:91:0.143:2	./.	0/1:53,10:31:63:0.159:2	./.	0/1:48,7:33:55:0.127:2	./.
chr1	152085505	rs2515663	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,7:26:7:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,112:29:112:1.00:2
chr1	152127455	rs75957773	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,85:32:190:0.447:2	0/1:96,91:32:187:0.487:2	0/1:99,95:32:194:0.490:2	./.	./.	./.
chr1	152127464	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:28:197:0.030:2	./.
chr1	152128121	rs72696940	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:82,104:31:187:0.559:2	0/1:94,91:31:185:0.492:2	./.	./.	0/1:107,79:31:186:0.425:2	./.	./.	./.	./.	./.	./.
chr1	152128212	rs143744326	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,81:32:177:0.458:2	./.
chr1	152128232	rs200878903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,7:24:149:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152129087	rs78544048	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,33:31:156:0.212:2	0/1:123,33:33:156:0.212:2	0/1:108,53:32:161:0.329:2	./.	0/1:117,24:32:141:0.170:2	./.
chr1	152129094	rs76015112	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,35:31:162:0.216:2	0/1:121,34:31:155:0.219:2	0/1:102,47:32:149:0.315:2	./.	0/1:116,25:32:141:0.177:2	./.
chr1	152129100	rs200003389	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:30:160:0.031:2	0/1:153,8:32:161:0.050:2	0/1:145,7:32:152:0.046:2	./.	./.	./.
chr1	152129101	rs117596468	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:32:160:0.031:2	0/1:151,8:31:159:0.050:2	0/1:145,8:30:153:0.052:2	./.	./.	./.
chr1	152129115	rs113327860	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,13:27:164:0.079:2	0/1:157,10:29:167:0.060:2	0/1:138,17:29:155:0.110:2	./.	0/1:141,7:31:148:0.047:2	./.
chr1	152185750	rs12729662	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:33,86:31:119:0.723:2	./.	./.	0/1:26,80:31:106:0.755:2	0/1:26,116:31:143:0.817:2	./.	0/1:19,57:32:76:0.750:2	./.
chr1	152185762	rs41266112	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,22:32:24:0.917:2	0/1:0,16:30:16:1.00:2	./.	0/1:92,16:33:108:0.148:2	0/1:0,25:32:25:1.00:2	0/1:2,32:33:34:0.941:2	0/1:90,18:32:108:0.167:2	0/1:131,13:34:144:0.090:2	0/1:0,23:33:23:1.00:2	0/1:63,8:31:71:0.113:2	0/1:1,18:30:19:0.947:2
chr1	152185768	rs41266114	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,12:31:13:0.923:2	0/1:0,9:32:9:1.00:2	./.	0/1:93,9:32:102:0.088:2	0/1:0,12:31:12:1.00:2	0/1:2,20:31:22:0.909:2	0/1:89,10:30:99:0.101:2	0/1:130,5:31:135:0.037:2	0/1:0,10:33:10:1.00:2	0/1:62,6:32:68:0.088:2	0/1:1,11:31:12:0.917:2
chr1	152185774	rs61814932	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:29:7:0.857:2	0/1:0,4:33:4:1.00:2	./.	./.	0/1:1,5:32:6:0.833:2	0/1:1,12:31:13:0.923:2	./.	./.	0/1:0,4:34:4:1.00:2	./.	0/1:1,3:33:4:0.750:2
chr1	152185882	rs41266126	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,11:32:12:0.917:2	0/1:0,7:32:7:1.00:2	./.	./.	0/1:2,5:30:7:0.714:2	0/1:0,5:28:5:1.00:2	./.	./.	0/1:0,4:29:4:1.00:2	0/1:43,5:32:49:0.104:2	0/1:1,11:30:12:0.917:2
chr1	152186027	rs201503718	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:32:31:0.097:2	./.	0/1:99,6:32:105:0.057:2
chr1	152186042	rs12751022	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.
chr1	152186099	rs144801487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,68:30:132:0.515:2	./.	./.	./.	./.	./.	./.
chr1	152186100	rs142956706	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:153,23:31:176:0.131:2	0/1:120,21:32:141:0.149:2	./.	./.	0/1:117,17:32:134:0.127:2	0/1:150,18:32:168:0.107:2	0/1:53,12:33:65:0.185:2	0/1:54,21:32:75:0.280:2	0/1:49,13:32:62:0.210:2	0/1:91,20:32:111:0.180:2	0/1:108,10:30:118:0.085:2
chr1	152186120	rs79071169	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,11:29:177:0.062:2	0/1:149,13:30:162:0.080:2	0/1:14,6:28:20:0.300:2	0/1:38,13:31:51:0.255:2	0/1:117,15:29:132:0.114:2	0/1:170,12:29:182:0.066:2	0/1:68,10:31:78:0.128:2	0/1:74,13:30:87:0.149:2	0/1:69,12:30:81:0.148:2	0/1:107,18:30:125:0.144:2	0/1:119,11:29:130:0.085:2
chr1	152186141	rs41266128	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:118,33:31:151:0.219:2	0/1:118,34:31:152:0.224:2	0/1:12,4:31:16:0.250:2	0/1:45,19:29:64:0.297:2	0/1:79,42:29:121:0.347:2	0/1:122,50:30:172:0.291:2	./.	./.	0/1:83,14:29:97:0.144:2	0/1:107,23:31:130:0.177:2	0/1:89,40:30:129:0.310:2
chr1	152186144	rs200748473	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:144,9:31:153:0.059:2	0/1:144,10:30:154:0.065:2	./.	./.	0/1:114,10:29:124:0.081:2	./.	0/1:74,6:25:80:0.075:2	0/1:94,9:30:103:0.087:2	0/1:89,10:27:99:0.101:2	./.	0/1:122,9:29:131:0.069:2
chr1	152186175	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,9:32:48:0.188:2	./.	./.	./.	./.	./.	./.	./.
chr1	152186178	rs4845748	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,42:31:113:0.372:2	0/1:64,42:32:106:0.396:2	./.	0/1:36,9:32:45:0.200:2	0/1:49,33:32:82:0.402:2	0/1:73,58:32:131:0.443:2	0/1:39,9:32:48:0.188:2	./.	0/1:50,19:33:69:0.275:2	0/1:68,25:32:93:0.269:2	0/1:53,40:32:93:0.430:2
chr1	152186179	rs199884729	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,6:30:45:0.133:2	./.	./.	./.	./.	./.	0/1:84,11:30:95:0.116:2	./.
chr1	152186185	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,10:31:126:0.079:2	./.	./.	./.	./.	./.
chr1	152186209	rs200517893	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	0/1:75,5:30:80:0.063:2	./.	./.	0/1:39,7:32:46:0.152:2	./.	0/1:59,5:30:65:0.078:2
chr1	152186218	rs146450966	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,4:29:44:0.091:2	./.	./.	./.	./.	./.	0/1:72,6:29:78:0.077:2	./.
chr1	152186222	rs4845424	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:27:91:1.00:2	0/1:2,42:28:44:0.955:2	0/1:2,4:31:6:0.667:2	0/1:32,12:31:44:0.273:2	0/1:0,43:28:43:1.00:2	./.	0/1:20,19:29:40:0.487:2	0/1:43,27:31:70:0.386:2	0/1:1,28:29:29:0.966:2	0/1:24,47:29:71:0.662:2	0/1:0,47:27:47:1.00:2
chr1	152186247	rs199977704	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,3:35:77:0.039:2	0/1:95,5:32:100:0.050:2	./.	./.	./.	./.	./.	0/1:78,5:36:83:0.060:2
chr1	152186401	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,11:29:193:0.057:2	./.
chr1	152186417	rs150508178	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:113,69:31:182:0.379:2	0/1:126,62:31:188:0.330:2	0/1:21,3:31:24:0.125:2	./.	0/1:164,12:30:176:0.068:2	0/1:158,31:31:189:0.164:2	0/1:157,15:30:172:0.087:2	0/1:169,13:32:182:0.071:2	0/1:149,14:31:163:0.086:2	0/1:149,36:32:185:0.195:2	0/1:127,49:32:176:0.278:2
chr1	152186422	rs202168784	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,3:33:20:0.150:2	0/1:102,34:32:136:0.250:2	./.	./.	0/1:143,27:31:170:0.159:2	0/1:164,20:32:184:0.109:2	./.	0/1:162,22:32:184:0.120:2	./.
chr1	152186427	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,10:29:180:0.056:2	./.	./.	./.
chr1	152186443	rs140336724	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:155,27:28:182:0.148:2	0/1:169,13:27:182:0.071:2	./.	./.	0/1:141,21:29:162:0.130:2	0/1:155,14:28:169:0.083:2	./.	./.	./.	0/1:146,17:29:163:0.104:2	0/1:163,19:29:182:0.104:2
chr1	152186451	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,8:30:185:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152186452	rs113556887	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:183,4:32:187:0.021:2	./.	0/1:99,19:31:119:0.161:2	0/1:158,10:31:168:0.060:2	0/1:160,8:30:168:0.048:2	0/1:134,7:32:141:0.050:2	0/1:163,16:31:179:0.089:2	./.	0/1:158,9:31:167:0.054:2	./.
chr1	152186490	rs201463788	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:177,9:32:187:0.048:2	0/1:178,13:33:191:0.068:2	./.	0/1:128,28:31:156:0.179:2	0/1:170,18:31:188:0.096:2	0/1:174,10:32:184:0.054:2	0/1:167,27:33:194:0.139:2	0/1:162,31:32:193:0.161:2	0/1:163,32:33:195:0.164:2	0/1:172,13:33:185:0.070:2	0/1:174,13:31:188:0.070:2
chr1	152186525	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,6:31:183:0.033:2	./.	./.	./.	./.	0/1:178,6:28:184:0.033:2	./.	./.	./.	./.	0/1:174,7:33:182:0.039:2
chr1	152186535	rs113263380	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,10:32:187:0.053:2	./.	./.	./.	./.	0/1:179,6:31:186:0.032:2	./.	./.	0/1:187,4:33:191:0.021:2	./.	0/1:173,7:32:181:0.039:2
chr1	152186614	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,15:34:188:0.080:2	0/1:180,9:33:189:0.048:2	./.	./.	./.	0/1:172,24:32:196:0.122:2	./.	./.	./.	0/1:182,11:33:193:0.057:2	./.
chr1	152186631	rs111539149	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:32:187:0.027:2	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.
chr1	152186699	.	T	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:155,20:32:175:0.114:2	0/1:166,25:32:191:0.131:2	0/1:160,4:32:164:0.024:2	./.	0/1:160,22:32:182:0.121:2	0/1:164,19:32:183:0.104:2	0/1:181,11:32:192:0.057:2	0/1:181,12:33:193:0.062:2	0/1:180,11:33:191:0.058:2	0/1:172,11:32:183:0.060:2	0/1:167,11:33:178:0.062:2
chr1	152186708	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:154,10:34:164:0.061:2	0/1:170,17:32:187:0.091:2	./.	./.	0/1:178,12:32:190:0.063:2	0/1:175,9:32:184:0.049:2	0/1:176,13:32:189:0.069:2	0/1:182,11:32:193:0.057:2	0/1:159,25:32:185:0.136:2	0/1:184,6:35:190:0.032:2	0/1:171,11:32:182:0.060:2
chr1	152186745	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,12:32:190:0.063:2	./.	./.	./.
chr1	152186766	rs4845747	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,76:32:189:0.402:2	0/1:124,68:33:192:0.354:2	0/1:94,20:32:114:0.175:2	0/1:171,16:32:187:0.086:2	0/1:117,78:32:195:0.400:2	0/1:127,61:33:188:0.324:2	0/1:162,30:32:192:0.156:2	0/1:161,30:32:191:0.157:2	0/1:129,57:33:186:0.306:2	0/1:143,51:33:194:0.263:2	0/1:113,70:32:183:0.383:2
chr1	152186802	rs78949172	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:173,20:27:193:0.104:2	0/1:180,11:27:191:0.058:2	0/1:63,5:29:68:0.074:2	0/1:147,9:26:156:0.058:2	0/1:171,9:26:180:0.050:2	0/1:159,15:27:174:0.086:2	0/1:183,9:27:192:0.047:2	0/1:169,16:29:185:0.086:2	0/1:125,16:29:141:0.113:2	0/1:186,7:27:193:0.036:2	0/1:159,23:24:182:0.126:2
chr1	152186837	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:169,23:31:192:0.120:2	0/1:174,17:31:191:0.089:2	./.	./.	./.	./.	./.	./.	./.	0/1:174,17:32:191:0.089:2	0/1:176,14:32:190:0.074:2
chr1	152186909	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:32:183:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152186960	rs2172974	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,10:31:184:0.054:2	0/1:182,8:33:190:0.042:2	./.	./.	./.	0/1:183,7:32:190:0.037:2	./.	0/1:184,5:29:190:0.026:2	./.	./.	0/1:181,5:33:186:0.027:2
chr1	152187028	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,16:30:195:0.082:2	0/1:173,21:29:194:0.108:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152187166	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152187178	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,8:32:189:0.042:2	./.	./.	./.	./.	./.
chr1	152187183	rs138393387	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:162,21:32:183:0.115:2	0/1:165,25:33:190:0.132:2	0/1:34,4:33:38:0.105:2	./.	0/1:161,28:31:189:0.148:2	0/1:169,17:32:186:0.091:2	0/1:181,8:34:189:0.042:2	0/1:180,15:32:195:0.077:2	0/1:176,7:32:183:0.038:2	0/1:163,25:32:188:0.133:2	0/1:148,33:32:181:0.182:2
chr1	152187276	rs199952550	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,8:33:72:0.111:2	0/1:171,21:32:192:0.109:2	./.	./.	0/1:181,16:33:197:0.081:2	0/1:176,15:34:191:0.079:2	./.	0/1:188,8:33:196:0.041:2	./.
chr1	152187437	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:170,16:33:186:0.086:2	0/1:167,14:30:181:0.077:2	./.	./.	0/1:186,10:32:196:0.051:2	0/1:184,10:31:194:0.052:2	0/1:177,11:30:188:0.059:2	0/1:183,10:32:194:0.052:2	0/1:185,14:32:199:0.070:2	0/1:187,6:33:193:0.031:2	0/1:178,7:33:186:0.038:2
chr1	152187451	rs144369469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,14:33:187:0.075:2	./.	./.	./.	./.	./.	./.
chr1	152187452	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,7:31:178:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152187510	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,10:32:171:0.058:2	0/1:109,9:32:118:0.076:2	./.	./.	0/1:132,4:31:136:0.029:2	0/1:157,4:33:161:0.025:2	0/1:121,5:33:126:0.040:2	./.	./.	./.	./.
chr1	152187530	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:111,5:30:116:0.043:2	./.	./.	./.	0/1:155,5:31:160:0.031:2	./.	./.	./.	./.	./.
chr1	152187552	rs373300484	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,12:31:157:0.076:2	0/1:102,8:32:110:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152187554	rs61814935	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,62:29:157:0.395:2	0/1:62,46:30:108:0.426:2	0/1:11,8:30:19:0.421:2	./.	0/1:60,32:29:92:0.348:2	0/1:108,31:29:139:0.223:2	0/1:64,29:29:93:0.312:2	0/1:96,45:29:141:0.319:2	0/1:61,40:31:101:0.396:2	0/1:113,32:29:145:0.221:2	0/1:59,19:31:78:0.244:2
chr1	152187562	rs61814936	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,154:31:154:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,68:31:68:1.00:2
chr1	152187588	rs201071455	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:153,21:33:174:0.121:2	0/1:159,24:32:183:0.131:2	./.	./.	0/1:157,34:31:191:0.178:2	0/1:153,37:31:190:0.195:2	0/1:154,8:32:162:0.049:2	0/1:169,11:31:180:0.061:2	0/1:178,14:32:192:0.073:2	0/1:171,16:32:187:0.086:2	0/1:134,26:32:160:0.163:2
chr1	152187589	rs143684430	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,6:30:30:0.200:2	0/1:127,41:31:168:0.244:2	./.	./.	0/1:146,22:30:168:0.131:2	0/1:149,30:30:179:0.168:2	./.	0/1:148,37:31:185:0.200:2	./.
chr1	152187595	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,14:31:191:0.073:2	./.	./.	./.	./.	./.
chr1	152187606	rs139799138	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,12:32:40:0.300:2	./.	0/1:176,15:31:191:0.079:2	./.	0/1:165,27:32:192:0.141:2	0/1:169,21:32:190:0.111:2	0/1:165,21:33:186:0.113:2	./.	./.
chr1	152187619	rs80264994	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,9:30:184:0.049:2	0/1:179,11:23:191:0.058:2	0/1:180,9:27:190:0.048:2	./.	./.	0/1:180,7:24:187:0.037:2	./.	0/1:177,7:29:184:0.038:2
chr1	152187628	rs75639578	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,7:28:64:0.109:2	0/1:143,37:29:180:0.206:2	./.	./.	0/1:168,26:29:194:0.134:2	0/1:164,29:28:193:0.150:2	./.	0/1:155,36:29:191:0.188:2	./.
chr1	152187657	rs61814937	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,17:32:181:0.094:2	0/1:182,6:32:188:0.032:2	0/1:174,14:33:188:0.074:2	./.	./.	0/1:157,17:33:174:0.098:2	./.	0/1:165,17:32:182:0.093:2
chr1	152187810	rs145371085	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,71:29:73:0.973:2	0/1:1,39:30:40:0.975:2	0/1:0,11:28:11:1.00:2	0/1:0,48:30:49:1.00:2	0/1:0,41:30:42:1.00:2	0/1:2,57:30:59:0.966:2	0/1:0,50:29:50:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,60:29:60:1.00:2	0/1:1,33:29:34:0.971:2
chr1	152187827	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:54,12:31:66:0.182:2	0/1:29,6:30:35:0.171:2	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:31:74:0.068:2	0/1:23,6:31:29:0.207:2
chr1	152187862	rs374237661	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,5:26:32:0.156:2
chr1	152187900	rs200252380	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:123,4:33:127:0.031:2	./.	./.	0/1:98,6:33:104:0.058:2	0/1:107,8:32:115:0.070:2	0/1:98,5:32:103:0.049:2	0/1:119,7:31:126:0.056:2	0/1:132,6:31:138:0.043:2	./.	0/1:98,4:32:102:0.039:2	0/1:80,7:31:87:0.080:2
chr1	152187935	rs61814938	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:111,71:30:182:0.390:2	0/1:115,75:31:190:0.395:2	0/1:23,10:30:33:0.303:2	./.	0/1:115,72:30:188:0.385:2	0/1:121,58:29:179:0.324:2	0/1:160,35:28:195:0.179:2	0/1:153,37:31:190:0.195:2	0/1:149,43:31:192:0.224:2	0/1:133,51:30:184:0.277:2	0/1:128,52:30:180:0.289:2
chr1	152187945	rs61814939	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,84:33:177:0.475:2	0/1:103,81:32:184:0.440:2	0/1:23,13:32:36:0.361:2	./.	0/1:97,90:31:187:0.481:2	0/1:101,76:31:178:0.429:2	0/1:130,62:32:193:0.323:2	0/1:146,42:32:189:0.223:2	0/1:144,49:33:193:0.254:2	0/1:125,60:32:185:0.324:2	0/1:123,62:33:185:0.335:2
chr1	152188041	rs200444708	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,11:29:187:0.059:2	0/1:178,14:28:192:0.073:2	0/1:113,9:30:122:0.074:2	0/1:22,28:30:52:0.560:2	0/1:186,9:24:195:0.046:2	0/1:182,6:30:188:0.032:2	./.	0/1:187,9:29:197:0.046:2	0/1:181,9:30:190:0.047:2	0/1:179,8:29:187:0.043:2	0/1:168,18:29:186:0.097:2
chr1	152188062	rs79940627	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,27:33:124:0.218:2	./.	0/1:169,22:31:191:0.115:2	./.	./.	./.	./.	./.	./.
chr1	152188109	rs61814940	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,66:32:168:0.393:2	0/1:118,72:32:190:0.379:2	0/1:53,50:32:103:0.485:2	0/1:183,6:29:191:0.032:2	0/1:121,74:32:195:0.379:2	0/1:110,71:32:181:0.392:2	0/1:135,53:32:188:0.282:2	0/1:141,46:32:187:0.246:2	0/1:144,48:34:192:0.250:2	0/1:131,51:32:183:0.280:2	0/1:112,69:32:181:0.381:2
chr1	152188118	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,12:33:173:0.069:2	0/1:178,10:31:188:0.053:2	./.	./.	0/1:183,8:31:191:0.042:2	0/1:175,8:32:183:0.044:2	0/1:178,14:31:192:0.073:2	0/1:185,10:31:195:0.051:2	0/1:180,7:31:187:0.037:2	0/1:170,16:31:186:0.086:2	./.
chr1	152188155	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,9:32:192:0.047:2	./.	./.	./.
chr1	152188176	rs147618491	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,50:33:182:0.275:2	0/1:143,34:32:177:0.192:2	0/1:42,12:32:54:0.222:2	0/1:137,39:32:176:0.222:2	0/1:159,33:31:192:0.172:2	0/1:129,58:31:187:0.310:2	0/1:166,22:32:188:0.117:2	0/1:160,24:31:184:0.130:2	0/1:141,44:33:185:0.238:2	0/1:161,32:32:193:0.166:2	0/1:132,49:33:181:0.271:2
chr1	152188212	rs4248393	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,10:32:171:0.058:2	0/1:175,12:30:187:0.064:2	./.	./.	0/1:189,5:33:194:0.026:2	0/1:178,9:28:187:0.048:2	0/1:180,5:32:185:0.027:2	0/1:179,10:32:189:0.053:2	./.	0/1:179,8:27:187:0.043:2	0/1:168,15:32:183:0.082:2
chr1	152188319	rs201547528	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,22:30:180:0.122:2	0/1:167,21:31:188:0.112:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152188370	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,11:25:187:0.059:2	0/1:177,9:27:187:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152188413	rs200760332	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,4:30:43:0.093:2	0/1:150,47:31:197:0.239:2	./.	./.	0/1:172,26:32:198:0.131:2	0/1:178,19:31:197:0.096:2	./.	0/1:151,37:32:188:0.197:2	./.
chr1	152188436	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,18:32:192:0.094:2
chr1	152188463	rs61814941	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:152,40:30:192:0.208:2	0/1:124,49:31:173:0.283:2	./.	./.	0/1:175,21:31:197:0.107:2	0/1:164,34:30:198:0.172:2	0/1:167,22:32:189:0.116:2	0/1:167,25:31:192:0.130:2	0/1:167,22:32:189:0.116:2	0/1:155,39:31:194:0.201:2	0/1:149,42:31:193:0.220:2
chr1	152188588	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:33:191:0.026:2	./.	./.	./.	./.	./.
chr1	152188593	rs201468984	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:156,26:32:182:0.143:2	0/1:160,19:32:179:0.106:2	0/1:37,5:31:42:0.119:2	./.	0/1:158,32:32:190:0.168:2	0/1:177,11:32:188:0.059:2	0/1:181,5:34:186:0.027:2	0/1:179,5:33:184:0.027:2	0/1:170,11:34:181:0.061:2	0/1:170,15:31:185:0.081:2	0/1:167,16:32:183:0.087:2
chr1	152188686	rs200335129	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,25:33:193:0.130:2	./.	./.	0/1:183,11:32:194:0.057:2	0/1:182,13:34:195:0.067:2	./.	0/1:174,9:33:183:0.049:2	./.
chr1	152188713	rs200918497	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152188847	rs145667921	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:168,13:32:181:0.072:2	0/1:175,9:32:184:0.049:2	./.	./.	0/1:182,12:32:194:0.062:2	0/1:183,10:31:193:0.052:2	0/1:180,18:32:198:0.091:2	0/1:169,26:31:195:0.133:2	0/1:180,16:33:196:0.082:2	0/1:177,16:32:193:0.083:2	0/1:182,6:33:188:0.032:2
chr1	152188861	rs201735593	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,13:31:193:0.067:2	./.	./.	./.	./.	./.	./.
chr1	152188862	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:31:183:0.033:2
chr1	152188919	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,10:30:188:0.053:2	./.	./.	./.	./.	./.	./.
chr1	152188920	rs61814942	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:147,38:32:186:0.205:2	0/1:156,35:30:191:0.183:2	./.	./.	0/1:165,25:30:190:0.132:2	0/1:145,38:32:183:0.208:2	0/1:95,41:32:136:0.301:2	0/1:136,48:32:184:0.261:2	0/1:137,49:33:186:0.263:2	0/1:146,40:32:187:0.215:2	0/1:159,23:31:182:0.126:2
chr1	152188940	rs34655925	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,20:30:178:0.113:2	0/1:156,34:30:190:0.179:2	0/1:26,9:30:35:0.257:2	0/1:95,47:30:142:0.331:2	0/1:139,20:30:159:0.126:2	0/1:155,30:29:185:0.162:2	0/1:100,18:28:118:0.153:2	0/1:134,43:29:178:0.243:2	0/1:166,23:29:189:0.122:2	0/1:131,43:29:175:0.247:2	0/1:155,29:30:185:0.158:2
chr1	152188961	rs76879172	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:159,13:31:172:0.076:2	0/1:172,13:32:185:0.070:2	./.	0/1:140,16:29:156:0.103:2	0/1:143,34:31:177:0.192:2	0/1:162,26:31:188:0.138:2	./.	./.	0/1:169,14:32:183:0.077:2	0/1:170,12:30:182:0.066:2	0/1:150,25:30:175:0.143:2
chr1	152188962	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,6:32:173:0.035:2	0/1:180,9:32:189:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152188964	rs78582525	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:158,17:32:175:0.097:2	0/1:167,21:31:188:0.112:2	0/1:37,7:31:44:0.159:2	./.	0/1:155,20:30:175:0.114:2	0/1:173,17:31:190:0.089:2	0/1:123,17:31:140:0.121:2	0/1:156,32:30:188:0.170:2	0/1:164,16:33:180:0.089:2	0/1:170,14:31:184:0.076:2	0/1:165,13:29:179:0.073:2
chr1	152188995	rs377679965	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,6:29:107:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr1	152188998	rs80018286	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,44:31:153:0.288:2	0/1:98,36:32:134:0.269:2	0/1:29,5:32:34:0.147:2	0/1:95,6:31:101:0.059:2	0/1:95,40:31:135:0.296:2	0/1:85,49:31:134:0.366:2	0/1:90,16:32:106:0.151:2	0/1:91,15:32:106:0.142:2	0/1:92,18:33:110:0.164:2	0/1:107,27:31:134:0.201:2	0/1:69,41:32:111:0.373:2
chr1	152188999	rs149648668	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,33:30:100:0.330:2	./.	./.	0/1:93,10:31:103:0.097:2	0/1:91,12:30:103:0.117:2	./.	0/1:119,13:30:132:0.098:2	./.
chr1	152189005	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,14:32:129:0.109:2	./.	./.	./.	./.	./.
chr1	152189016	rs200517377	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,5:33:27:0.185:2	./.	0/1:119,10:32:129:0.078:2	./.	0/1:93,12:32:105:0.114:2	0/1:85,11:32:96:0.115:2	0/1:85,5:29:90:0.056:2	./.	./.
chr1	152189029	rs76438416	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,7:30:120:0.058:2	0/1:112,9:30:121:0.074:2	./.	./.	./.	./.	0/1:97,5:32:102:0.049:2
chr1	152189038	rs145118416	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,3:32:17:0.176:2	0/1:40,25:30:65:0.385:2	./.	./.	0/1:83,10:29:93:0.108:2	0/1:83,9:31:92:0.098:2	./.	0/1:96,15:29:111:0.135:2	./.
chr1	152189055	rs4845749	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,5:34:5:1.00:2	0/1:1,22:32:23:0.957:2	0/1:0,63:31:63:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,45:32:46:1.00:2	0/1:2,49:32:51:0.961:2	0/1:0,47:33:47:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,52:31:52:1.00:2
chr1	152189067	rs71625162	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,5:31:50:0.100:2	./.	0/1:60,3:35:63:0.048:2
chr1	152189221	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,8:30:188:0.043:2	./.
chr1	152189237	rs200543988	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:106,78:32:184:0.424:2	0/1:101,62:31:163:0.380:2	0/1:17,7:32:24:0.292:2	./.	0/1:159,10:32:169:0.059:2	0/1:158,29:32:187:0.155:2	0/1:148,9:33:157:0.057:2	0/1:141,11:31:152:0.072:2	0/1:114,9:32:123:0.073:2	0/1:149,37:31:186:0.199:2	0/1:105,55:31:160:0.344:2
chr1	152189242	rs201431455	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,27:32:127:0.213:2	./.	./.	0/1:135,25:32:161:0.156:2	0/1:138,24:32:162:0.148:2	./.	0/1:164,20:31:184:0.109:2	./.
chr1	152189247	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,14:30:172:0.082:2	./.	./.	./.
chr1	152189263	rs149533530	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:162,20:28:182:0.110:2	0/1:164,23:28:187:0.123:2	0/1:22,4:29:26:0.154:2	./.	0/1:149,24:29:173:0.139:2	0/1:162,13:29:175:0.074:2	./.	./.	./.	0/1:162,23:27:185:0.124:2	0/1:167,18:28:185:0.097:2
chr1	152189271	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,8:31:182:0.044:2	0/1:184,6:32:190:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189272	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,12:30:108:0.111:2	0/1:168,9:30:177:0.051:2	0/1:170,9:31:179:0.050:2	0/1:145,14:31:159:0.088:2	0/1:173,11:32:184:0.060:2	0/1:135,5:33:140:0.036:2	0/1:167,12:32:179:0.067:2	0/1:178,5:30:183:0.027:2
chr1	152189310	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:183,5:31:188:0.027:2	0/1:186,9:30:195:0.046:2	./.	0/1:116,31:32:147:0.211:2	0/1:180,15:32:195:0.077:2	0/1:166,18:31:185:0.098:2	0/1:169,25:32:194:0.129:2	0/1:158,34:32:192:0.177:2	0/1:186,9:34:195:0.046:2	0/1:167,24:32:191:0.126:2	0/1:167,19:31:186:0.102:2
chr1	152189345	rs199713875	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,7:31:175:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189355	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,5:30:178:0.028:2	./.	./.	./.	./.	0/1:181,6:30:187:0.032:2	./.	./.	./.	./.	./.
chr1	152189434	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,15:33:187:0.080:2	0/1:170,13:33:183:0.071:2	./.	./.	./.	0/1:158,34:33:192:0.177:2	./.	./.	./.	0/1:184,8:32:192:0.042:2	./.
chr1	152189519	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:134,9:33:143:0.063:2	./.	./.	./.	0/1:141,12:31:153:0.078:2	0/1:131,8:30:139:0.058:2	./.	0/1:150,4:32:154:0.026:2	./.	./.	0/1:128,8:33:136:0.059:2
chr1	152189528	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:125,8:32:133:0.060:2	0/1:99,11:32:110:0.100:2	./.	./.	0/1:134,10:29:144:0.069:2	0/1:116,6:29:122:0.049:2	0/1:115,24:31:139:0.173:2	0/1:135,8:29:144:0.056:2	0/1:98,6:32:104:0.058:2	0/1:125,10:29:135:0.074:2	0/1:114,7:32:121:0.058:2
chr1	152189586	rs77598269	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,33:32:73:0.452:2	0/1:32,15:33:47:0.319:2	0/1:3,3:26:6:0.500:2	./.	0/1:17,14:33:31:0.452:2	0/1:26,9:33:35:0.257:2	0/1:29,5:33:34:0.147:2	0/1:23,9:31:32:0.281:2	0/1:4,6:35:10:0.600:2	0/1:33,13:32:46:0.283:2	0/1:26,10:33:36:0.278:2
chr1	152189622	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,20:28:166:0.120:2	0/1:95,10:29:105:0.095:2	./.	./.	./.	0/1:78,12:28:90:0.133:2	0/1:74,4:32:78:0.051:2	./.	0/1:32,7:28:39:0.179:2	0/1:105,6:28:111:0.054:2	0/1:79,13:27:92:0.141:2
chr1	152189657	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:163,18:32:181:0.099:2	0/1:140,17:32:158:0.108:2	./.	./.	./.	./.	./.	./.	./.	0/1:173,15:32:188:0.080:2	0/1:136,7:32:143:0.049:2
chr1	152189729	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,7:32:177:0.040:2	0/1:153,7:31:160:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189780	rs368528146	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,8:32:133:0.060:2	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.	./.	./.	0/1:130,6:32:136:0.044:2
chr1	152189848	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189864	rs111689937	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr1	152189893	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.
chr1	152189998	rs187453916	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189999	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2
chr1	152190014	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2
chr1	152190112	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:29:5:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:56,4:27:60:0.067:2	0/1:1,3:31:4:0.750:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:31,5:31:36:0.139:2	./.
chr1	152190257	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,16:32:177:0.090:2	0/1:158,11:31:169:0.065:2	./.	./.	0/1:184,15:32:199:0.075:2	0/1:171,10:33:181:0.055:2	0/1:174,16:32:190:0.084:2	0/1:163,18:32:181:0.099:2	0/1:146,11:34:157:0.070:2	0/1:177,9:34:186:0.048:2	0/1:153,8:33:161:0.050:2
chr1	152190271	rs200643488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,18:29:195:0.092:2	./.	./.	./.	./.	./.	./.
chr1	152190330	rs200844006	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:83,29:31:112:0.259:2	0/1:75,24:31:99:0.242:2	./.	./.	0/1:82,8:30:90:0.089:2	0/1:75,19:29:94:0.202:2	0/1:56,11:31:67:0.164:2	0/1:73,27:32:101:0.270:2	0/1:87,16:31:103:0.155:2	0/1:73,13:32:86:0.151:2	0/1:83,18:30:101:0.178:2
chr1	152190371	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr1	152190452	rs140247939	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,25:28:26:0.962:2	0/1:1,11:30:12:0.917:2	./.	0/1:8,6:33:14:0.429:2	0/1:3,7:28:10:0.700:2	0/1:0,9:31:9:1.00:2	0/1:16,8:31:25:0.333:2	0/1:16,10:33:27:0.385:2	0/1:0,9:32:9:1.00:2	0/1:12,11:32:23:0.478:2	0/1:2,3:31:5:0.600:2
chr1	152190477	rs200854195	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,7:33:36:0.194:2	./.	0/1:68,6:32:74:0.081:2	./.	./.	./.	./.	0/1:50,6:32:56:0.107:2
chr1	152190631	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,15:31:190:0.079:2	./.
chr1	152190647	rs201434802	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:124,64:31:188:0.340:2	0/1:112,69:32:181:0.381:2	0/1:15,5:32:20:0.250:2	./.	0/1:176,10:28:186:0.054:2	0/1:160,27:32:187:0.144:2	0/1:172,13:32:185:0.070:2	0/1:159,21:31:180:0.117:2	0/1:139,9:32:148:0.061:2	0/1:142,41:32:183:0.224:2	0/1:122,45:32:167:0.269:2
chr1	152190652	rs200579715	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,25:32:153:0.163:2	./.	./.	0/1:158,25:31:183:0.137:2	0/1:150,32:33:182:0.176:2	./.	0/1:149,36:32:185:0.195:2	./.
chr1	152190657	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,20:29:175:0.114:2	./.	./.	./.
chr1	152190673	rs201109361	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:152,18:30:170:0.106:2	0/1:153,13:27:166:0.078:2	./.	./.	0/1:165,23:29:188:0.122:2	0/1:135,26:29:161:0.161:2	./.	./.	./.	0/1:156,14:28:170:0.082:2	0/1:154,16:30:170:0.094:2
chr1	152190681	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,8:31:169:0.047:2	0/1:164,6:32:170:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152190682	rs71625163	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,3:30:19:0.158:2	0/1:100,28:31:128:0.219:2	0/1:174,4:31:178:0.022:2	0/1:158,7:32:165:0.042:2	0/1:144,17:31:161:0.106:2	0/1:134,16:32:150:0.107:2	0/1:125,5:32:130:0.038:2	0/1:152,8:31:160:0.050:2	0/1:159,5:32:165:0.030:2
chr1	152190720	rs7514457	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,43:32:189:0.228:2	0/1:135,52:32:187:0.278:2	0/1:24,3:33:27:0.111:2	0/1:100,51:32:151:0.338:2	0/1:145,51:32:196:0.260:2	0/1:126,51:31:178:0.288:2	0/1:119,45:32:164:0.274:2	0/1:118,39:32:157:0.248:2	0/1:88,53:32:141:0.376:2	0/1:163,24:33:187:0.128:2	0/1:117,47:32:164:0.287:2
chr1	152190755	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,8:31:179:0.045:2	0/1:178,7:32:185:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,6:30:178:0.034:2
chr1	152190765	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:177,9:32:187:0.048:2	0/1:178,6:32:184:0.033:2	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:191:0.032:2	./.
chr1	152190835	rs144383071	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,19:31:58:0.328:2	0/1:111,81:31:192:0.422:2	./.	./.	0/1:128,69:31:197:0.350:2	0/1:121,76:31:197:0.386:2	./.	0/1:115,70:31:185:0.378:2	./.
chr1	152190844	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:33:190:0.021:2	0/1:182,5:32:187:0.027:2	./.	./.	./.	0/1:187,6:28:194:0.031:2	./.	./.	./.	./.	./.
chr1	152190929	rs201161687	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,10:32:191:0.052:2	0/1:155,6:31:161:0.037:2	./.	./.	./.	0/1:185,5:32:190:0.026:2	0/1:190,5:32:195:0.026:2	0/1:184,9:32:193:0.047:2	0/1:192,4:32:196:0.020:2	0/1:177,8:33:185:0.043:2	0/1:175,11:30:186:0.059:2
chr1	152190938	rs139994162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:33:188:0.027:2
chr1	152190945	rs77376932	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,69:31:187:0.369:2	./.	./.	0/1:115,66:32:181:0.365:2	0/1:120,71:31:191:0.372:2	./.	0/1:116,68:31:184:0.370:2	./.
chr1	152190947	rs142424978	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,70:31:189:0.372:2	./.	./.	./.	./.	./.	./.	./.
chr1	152190996	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,5:31:129:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191033	rs148722408	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,5:28:105:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191051	rs74868796	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:110,7:31:117:0.060:2	0/1:59,6:33:65:0.092:2	./.	./.	0/1:84,5:31:89:0.056:2	./.	./.	./.	./.	0/1:45,35:33:80:0.438:2	0/1:60,42:32:103:0.412:2
chr1	152191139	rs201982359	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:158:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191168	rs146693658	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,11:29:153:0.072:2	0/1:118,6:32:124:0.048:2	./.	./.	./.	0/1:176,5:32:181:0.028:2	0/1:183,5:28:188:0.027:2	./.	./.	0/1:167,4:34:171:0.023:2	./.
chr1	152191197	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:158:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191290	rs200852837	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:107,10:29:117:0.085:2	0/1:64,5:32:69:0.072:2	./.	./.	./.	./.	./.	0/1:124,5:32:129:0.039:2	0/1:142,5:31:147:0.034:2	0/1:106,4:33:110:0.036:2	0/1:101,9:34:110:0.082:2
chr1	152191312	rs182032057	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,6:28:106:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191328	rs202240072	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191343	rs142342392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:31:82:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191387	rs144929567	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,4:28:72:0.056:2	0/1:36,7:27:43:0.163:2	./.	0/1:51,8:27:59:0.136:2	0/1:29,4:27:33:0.121:2	./.	./.	./.	./.	0/1:34,4:29:38:0.105:2	0/1:32,4:28:36:0.111:2
chr1	152191404	rs142336181	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,6:32:66:0.091:2	0/1:33,13:32:46:0.283:2	./.	0/1:46,9:32:55:0.164:2	0/1:30,3:32:33:0.091:2	./.	0/1:26,5:31:31:0.161:2	./.	./.	0/1:30,5:31:35:0.143:2	0/1:34,5:32:39:0.128:2
chr1	152191456	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,7:33:54:0.130:2	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr1	152191709	rs6662450	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:32:57:0.982:2	0/1:0,40:32:40:1.00:2	./.	0/1:42,51:32:93:0.548:2	0/1:1,75:32:76:0.987:2	0/1:0,94:32:94:1.00:2	0/1:46,35:32:81:0.432:2	0/1:38,23:32:61:0.377:2	0/1:0,79:32:79:1.00:2	0/1:43,29:32:72:0.403:2	0/1:0,60:32:60:1.00:2
chr1	152191879	rs10788828	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:3,70:31:73:0.959:2	0/1:10,7:30:17:0.412:2	0/1:65,63:31:128:0.492:2	0/1:0,170:31:170:1.00:2	0/1:0,131:31:131:1.00:2	0/1:49,73:32:122:0.598:2	0/1:72,67:32:139:0.482:2	0/1:0,163:32:163:1.00:2	0/1:81,54:32:135:0.400:2	0/1:3,119:32:122:0.975:2
chr1	152192098	rs200002963	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,8:26:97:0.082:2	0/1:41,5:25:46:0.109:2	./.	0/1:95,5:29:100:0.050:2	0/1:97,8:21:105:0.076:2	./.	./.	./.	./.	0/1:127,6:24:134:0.045:2	0/1:105,9:23:114:0.079:2
chr1	152192099	rs77790012	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,8:26:97:0.082:2	0/1:41,5:30:46:0.109:2	./.	0/1:98,5:32:103:0.049:2	0/1:99,8:24:107:0.075:2	0/1:97,4:31:101:0.040:2	0/1:120,5:30:125:0.040:2	0/1:119,5:26:124:0.040:2	./.	0/1:125,7:25:132:0.053:2	0/1:105,9:29:114:0.079:2
chr1	152192102	rs201373508	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,8:30:97:0.082:2	0/1:43,5:29:48:0.104:2	./.	0/1:103,5:31:108:0.046:2	0/1:104,8:29:112:0.071:2	0/1:108,4:31:112:0.036:2	0/1:124,5:30:129:0.039:2	0/1:123,5:31:128:0.039:2	./.	0/1:128,6:31:134:0.045:2	0/1:103,10:27:113:0.088:2
chr1	152192114	rs7520249	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,52:31:143:0.364:2	0/1:66,47:32:113:0.416:2	0/1:8,11:30:19:0.579:2	0/1:66,64:31:130:0.492:2	0/1:54,109:30:163:0.669:2	0/1:46,108:30:154:0.701:2	0/1:101,71:31:173:0.413:2	0/1:105,69:31:174:0.397:2	0/1:23,122:31:145:0.841:2	0/1:94,58:31:152:0.382:2	0/1:51,82:31:134:0.617:2
chr1	152192153	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:144,14:32:158:0.089:2	0/1:138,7:32:145:0.048:2	./.	0/1:181,7:25:188:0.037:2	./.	./.	./.	./.	./.	0/1:148,8:29:156:0.051:2	0/1:137,8:33:145:0.055:2
chr1	152192163	rs61814943	G	T,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:30:191:0.037:2	0/1:32:180:0.296:2	0/1:31:165:0.284:2	0/1:31:188:0.226:2	0/1:31:178:0.219:2	0/1:33:188:0.176:2	./.	./.
chr1	152192219	rs79513582	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:109,51:33:160:0.319:2	0/1:100,50:33:150:0.333:2	0/1:40,4:33:44:0.091:2	./.	0/1:165,32:30:197:0.162:2	0/1:157,30:33:187:0.160:2	0/1:167,21:32:188:0.112:2	0/1:167,23:31:190:0.121:2	0/1:181,8:33:189:0.042:2	0/1:141,35:33:176:0.199:2	0/1:156,26:31:182:0.143:2
chr1	152192259	rs76694305	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:105,50:31:155:0.323:2	0/1:121,43:32:164:0.262:2	./.	./.	0/1:176,16:31:192:0.083:2	0/1:162,22:31:184:0.120:2	0/1:184,6:32:190:0.032:2	0/1:174,10:32:184:0.054:2	0/1:185,5:33:190:0.026:2	0/1:149,30:32:180:0.168:2	0/1:158,18:32:177:0.102:2
chr1	152192293	rs7520375	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:32:131:1.00:2	0/1:0,150:32:150:1.00:2	0/1:23,29:32:52:0.558:2	0/1:104,81:32:185:0.438:2	0/1:0,165:32:166:1.00:2	0/1:2,174:32:176:0.989:2	0/1:84,98:32:183:0.538:2	0/1:79,103:32:182:0.566:2	0/1:0,171:34:171:1.00:2	0/1:87,84:33:171:0.491:2	0/1:2,147:33:149:0.987:2
chr1	152192305	rs60458005	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:122,32:30:154:0.208:2	0/1:114,31:31:145:0.214:2	./.	./.	0/1:183,5:32:188:0.027:2	0/1:167,15:30:182:0.082:2	0/1:185,7:27:192:0.036:2	0/1:189,7:32:196:0.036:2	0/1:179,5:33:184:0.027:2	0/1:160,14:31:175:0.080:2	0/1:153,12:31:165:0.073:2
chr1	152192345	rs201037339	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:146,29:26:175:0.166:2	0/1:108,22:26:130:0.169:2	./.	0/1:175,9:23:184:0.049:2	./.	0/1:174,10:26:184:0.054:2	0/1:172,6:25:178:0.034:2	0/1:173,5:28:178:0.028:2	0/1:183,6:28:189:0.032:2	0/1:165,14:27:179:0.078:2	0/1:164,12:26:176:0.068:2
chr1	152192395	rs61814946	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,74:30:148:0.500:2	./.	./.	./.	./.	./.
chr1	152192398	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:33:164:0.030:2	./.	0/1:129,4:34:133:0.030:2	./.
chr1	152192549	rs12145941	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,56:30:128:0.438:2	./.	./.	./.	./.	./.
chr1	152192555	rs41266134	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,52:32:128:0.406:2	./.	./.	0/1:55,63:33:118:0.534:2	0/1:75,68:32:143:0.476:2	./.	0/1:71,56:32:127:0.441:2	./.
chr1	152192631	rs6587647	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:33:109:1.00:2	0/1:0,53:32:53:1.00:2	0/1:6,9:32:15:0.600:2	0/1:48,66:33:114:0.579:2	0/1:0,103:32:103:1.00:2	0/1:0,130:32:130:1.00:2	0/1:80,54:32:134:0.403:2	0/1:70,64:32:134:0.478:2	0/1:0,125:33:125:1.00:2	0/1:68,76:33:144:0.528:2	0/1:1,99:33:100:0.990:2
chr1	152192687	rs6587648	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,103:32:103:1.00:2
chr1	152192825	rs6666097	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,75:30:78:0.962:2	0/1:4,49:31:53:0.925:2	./.	./.	0/1:35,37:29:72:0.514:2	0/1:39,31:30:70:0.443:2	0/1:24,45:29:69:0.652:2	0/1:36,44:30:80:0.550:2	0/1:42,34:30:77:0.447:2	0/1:34,44:31:78:0.564:2	0/1:30,26:29:56:0.464:2
chr1	152192932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:152:0.026:2
chr1	152192978	rs6587649	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:29:123:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,154:29:154:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,156:29:156:1.00:2	0/1:0,137:29:137:1.00:2	0/1:2,171:29:173:0.988:2	0/1:0,154:29:154:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,135:29:135:1.00:2
chr1	152193052	rs6587650	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,71:30:71:1.00:2	0/1:1,56:30:57:0.982:2	0/1:2,91:30:93:0.978:2	0/1:0,61:30:61:1.00:2	0/1:1,59:30:60:0.983:2	0/1:0,74:30:74:1.00:2
chr1	152193121	rs6587651	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:30:64:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,4:31:4:1.00:2	0/1:40,41:30:81:0.506:2	0/1:0,26:30:26:1.00:2	0/1:0,63:31:63:1.00:2	0/1:22,15:32:37:0.405:2	0/1:45,19:29:64:0.297:2	0/1:0,44:32:44:1.00:2	0/1:33,22:31:55:0.400:2	0/1:1,59:31:60:0.983:2
chr1	152193285	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:95,5:28:100:0.050:2	0/1:46,7:30:53:0.132:2	./.	./.	./.	./.	./.	0/1:120,4:30:124:0.032:2	./.	./.	./.
chr1	152193286	rs7545406	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:8,92:32:100:0.920:2	0/1:9,45:32:54:0.833:2	0/1:5,5:33:10:0.500:2	./.	0/1:62,56:31:118:0.475:2	0/1:76,51:30:127:0.402:2	0/1:68,59:32:127:0.465:2	0/1:66,57:31:123:0.463:2	0/1:79,57:32:136:0.419:2	0/1:73,46:31:119:0.387:2	0/1:51,44:30:95:0.463:2
chr1	152193291	rs6587652	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,94:32:101:0.931:2	0/1:8,46:32:54:0.852:2	0/1:5,5:32:10:0.500:2	0/1:64,71:32:135:0.526:2	0/1:6,106:31:112:0.946:2	0/1:5,118:31:123:0.959:2	0/1:68,62:32:130:0.477:2	0/1:64,57:32:121:0.471:2	0/1:3,131:32:134:0.978:2	0/1:68,50:32:118:0.424:2	0/1:5,90:32:95:0.947:2
chr1	152193316	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:114,5:32:119:0.042:2	0/1:54,9:30:63:0.143:2	./.	./.	0/1:126,6:31:132:0.045:2	0/1:141,7:29:148:0.047:2	./.	0/1:152,5:31:157:0.032:2	./.	./.	./.
chr1	152193361	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:125,4:32:129:0.031:2	0/1:58,8:32:66:0.121:2	./.	./.	0/1:107,4:34:111:0.036:2	0/1:124,7:33:131:0.053:2	./.	0/1:152,6:33:158:0.038:2	./.	./.	./.
chr1	152193378	rs199662473	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.
chr1	152193544	rs7535536	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:31:77:0.987:2	0/1:0,37:32:37:1.00:2	0/1:5,3:25:8:0.375:2	0/1:53,40:32:93:0.430:2	0/1:2,77:31:79:0.975:2	0/1:0,65:31:65:1.00:2	0/1:37,44:32:81:0.543:2	0/1:61,40:31:101:0.396:2	0/1:0,94:32:94:1.00:2	0/1:34,27:33:61:0.443:2	0/1:0,48:32:48:1.00:2
chr1	152193547	rs6587653	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,78:32:79:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,48:32:48:1.00:2
chr1	152193851	rs11204937	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,122:32:125:0.984:2	0/1:0,74:32:74:1.00:2	0/1:7,5:31:12:0.417:2	0/1:73,63:31:137:0.463:2	0/1:0,91:31:91:1.00:2	0/1:1,100:31:101:0.990:2	0/1:35,49:32:84:0.583:2	0/1:74,65:32:139:0.468:2	0/1:0,129:33:129:1.00:2	0/1:49,56:32:105:0.533:2	0/1:1,150:32:151:0.993:2
chr1	152275960	rs144046718	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:29:193:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152276149	rs77422831	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,19:30:37:0.514:2	0/1:92,91:30:183:0.497:2	./.	./.	0/1:101,85:31:187:0.457:2	0/1:104,83:30:187:0.444:2	./.	0/1:97,80:31:178:0.452:2	./.
chr1	152276282	rs55707024	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,10:32:49:0.204:2	0/1:158,20:32:179:0.112:2	./.	./.	0/1:156,29:33:186:0.157:2	0/1:157,30:32:188:0.160:2	./.	0/1:159,17:33:176:0.097:2	./.
chr1	152276377	rs139284720	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,5:32:22:0.227:2	0/1:150,39:32:189:0.206:2	./.	./.	0/1:136,49:31:185:0.265:2	0/1:135,55:32:190:0.289:2	./.	0/1:113,25:31:138:0.181:2	./.
chr1	152276386	rs199655799	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,6:26:187:0.032:2	./.	./.	./.	./.	./.	./.
chr1	152276459	rs75448155	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,4:30:26:0.154:2	0/1:154,42:30:196:0.214:2	./.	./.	0/1:149,45:31:194:0.232:2	0/1:151,42:31:193:0.218:2	./.	0/1:135,50:32:185:0.270:2	./.
chr1	152276490	rs199933055	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:149,6:33:156:0.039:2	./.	0/1:188,5:33:197:0.026:2	0/1:181,18:33:199:0.090:2	0/1:183,9:28:194:0.047:2	./.	./.	0/1:185,6:33:192:0.031:2	0/1:184,8:33:193:0.042:2	0/1:179,11:30:191:0.058:2
chr1	152276583	rs12083389	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,6:31:36:0.167:2	0/1:135,21:32:156:0.135:2	./.	./.	0/1:134,19:31:153:0.124:2	0/1:159,19:32:178:0.107:2	./.	0/1:159,22:31:181:0.122:2	./.
chr1	152276598	rs12742178	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,7:30:35:0.200:2	0/1:127,13:30:140:0.093:2	./.	./.	0/1:111,26:32:137:0.190:2	0/1:138,17:31:155:0.110:2	./.	0/1:150,15:31:165:0.091:2	./.
chr1	152276626	rs3126075	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,4:30:23:0.174:2	0/1:117,15:32:133:0.114:2	./.	./.	0/1:83,12:31:95:0.126:2	0/1:121,18:32:139:0.129:2	./.	0/1:134,22:30:156:0.141:2	./.
chr1	152276659	rs7532285	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,5:33:145:0.035:2	./.	./.	0/1:91,9:31:100:0.090:2	0/1:138,13:31:151:0.086:2	./.	0/1:142,9:31:151:0.060:2	./.
chr1	152276660	rs7540123	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,5:32:145:0.035:2	./.	./.	0/1:89,9:30:98:0.092:2	0/1:139,13:31:152:0.086:2	./.	0/1:140,9:31:149:0.060:2	./.
chr1	152276671	rs7518080	C	T,A	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:29:158:0.076:2	./.	0/2:31:149:0.439:2	0/1:29:106:0.132:2	0/1:30:164:0.091:2	./.	0/1:31:149:0.081:2	./.
chr1	152276699	rs12728605	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:31:15:0.533:2	0/1:133,33:30:166:0.199:2	./.	./.	0/1:107,19:30:126:0.151:2	0/1:149,40:29:189:0.212:2	./.	0/1:133,41:30:174:0.236:2	./.
chr1	152276772	rs72697000	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,12:28:27:0.444:2	0/1:101,75:30:177:0.426:2	./.	./.	0/1:106,71:29:178:0.401:2	0/1:95,82:29:177:0.463:2	./.	0/1:104,82:30:186:0.441:2	./.
chr1	152276798	rs114892044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.
chr1	152276871	rs3126066	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,10:28:26:0.385:2	0/1:92,77:28:170:0.456:2	./.	./.	0/1:76,46:29:122:0.377:2	0/1:97,78:28:175:0.446:2	./.	0/1:108,75:28:183:0.410:2	./.
chr1	152276889	rs3126067	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:29:27:0.370:2	0/1:94,74:29:169:0.440:2	./.	./.	0/1:63,51:29:114:0.447:2	0/1:99,76:29:175:0.434:2	./.	0/1:99,75:30:174:0.431:2	./.
chr1	152277055	rs2065955	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,12:33:27:0.444:2	0/1:92,91:32:183:0.497:2	./.	./.	0/1:112,71:32:183:0.388:2	0/1:105,86:32:191:0.450:2	./.	0/1:107,82:32:189:0.434:2	./.
chr1	152277115	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:30:194:0.036:2	./.
chr1	152277168	rs3091276	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:29:22:0.273:2	0/1:119,59:30:178:0.331:2	./.	./.	0/1:125,48:27:174:0.277:2	0/1:107,82:29:189:0.434:2	./.	0/1:111,60:29:172:0.351:2	./.
chr1	152277229	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:31:186:0.027:2	./.	./.	./.
chr1	152277248	rs149432670	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,110:30:180:0.611:2	./.
chr1	152277345	rs2065956	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:32:17:0.412:2	0/1:75,57:31:132:0.432:2	./.	./.	0/1:98,49:32:147:0.333:2	0/1:89,88:32:177:0.497:2	./.	0/1:66,40:32:106:0.377:2	./.
chr1	152277396	rs6681433	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:31:22:0.409:2	0/1:75,43:33:118:0.364:2	./.	./.	0/1:110,57:32:167:0.341:2	0/1:92,94:32:186:0.505:2	./.	0/1:79,49:32:128:0.383:2	./.
chr1	152277554	rs35621145	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152277690	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:30:182:0.033:2	./.	./.	./.
chr1	152277698	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	0/1:142,4:31:147:0.027:2	0/1:182,6:30:189:0.032:2	./.	./.	./.
chr1	152277717	rs9436066	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:28:21:0.381:2	0/1:110,76:29:186:0.409:2	./.	./.	0/1:98,71:30:169:0.420:2	0/1:109,72:30:181:0.398:2	./.	0/1:116,70:30:186:0.376:2	./.
chr1	152277790	rs79921407	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,5:34:184:0.027:2	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.
chr1	152277822	rs3126069	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,9:24:163:0.055:2	./.	./.	./.	./.	./.	0/1:153,8:28:161:0.050:2	./.
chr1	152277826	rs2065957	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,11:30:168:0.065:2	./.	./.	0/1:172,9:32:181:0.050:2	0/1:167,12:32:179:0.067:2	./.	0/1:160,10:28:170:0.059:2	./.
chr1	152277884	rs145597576	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,5:28:194:0.026:2	./.	./.	./.	0/1:184,11:29:195:0.056:2	./.	0/1:187,8:30:195:0.041:2	./.
chr1	152278306	rs199854301	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2	./.	./.	./.	./.
chr1	152278434	rs61816760	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,64:32:181:0.354:2	0/1:109,55:33:166:0.335:2	0/1:28,7:32:35:0.200:2	0/1:165,30:31:195:0.154:2	0/1:38,147:32:187:0.795:2	0/1:125,63:32:188:0.335:2	0/1:166,32:33:198:0.162:2	0/1:161,29:32:191:0.153:2	0/1:122,69:33:193:0.361:2	0/1:160,32:32:193:0.167:2	0/1:63,120:32:183:0.656:2
chr1	152278555	rs80221306	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:55,20:33:75:0.267:2	0/1:156,34:33:190:0.179:2	./.	./.	0/1:157,40:32:197:0.203:2	0/1:159,37:32:196:0.189:2	./.	0/1:153,38:33:192:0.199:2	./.
chr1	152278662	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,8:32:186:0.043:2	./.	0/1:195,4:33:199:0.020:2	./.
chr1	152278670	rs150427834	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,11:32:186:0.059:2	./.	./.	./.
chr1	152278689	rs57672167	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,20:30:33:0.606:2	0/1:96,82:30:178:0.461:2	0/1:189,8:30:197:0.041:2	./.	0/1:60,119:29:179:0.665:2	0/1:76,94:30:170:0.553:2	./.	0/1:100,94:30:194:0.485:2	./.
chr1	152278814	rs2184952	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,11:31:64:0.172:2	0/1:163,25:31:188:0.133:2	./.	./.	0/1:142,50:33:192:0.260:2	0/1:150,38:33:188:0.202:2	./.	0/1:161,25:33:186:0.134:2	./.
chr1	152278856	rs11582087	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,16:30:55:0.291:2	0/1:155,35:28:191:0.184:2	./.	./.	0/1:148,47:29:195:0.241:2	0/1:149,42:29:191:0.220:2	./.	0/1:154,37:28:191:0.194:2	./.
chr1	152279019	rs57670307	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:78,25:31:103:0.243:2	0/1:163,30:32:193:0.155:2	./.	./.	0/1:165,31:32:196:0.158:2	0/1:145,51:31:196:0.260:2	./.	0/1:162,33:32:195:0.169:2	./.
chr1	152279219	rs149520854	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr1	152279406	rs192116923	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,64:33:188:0.340:2	0/1:100,59:32:159:0.371:2	0/1:33,4:32:37:0.108:2	0/1:164,30:32:194:0.155:2	0/1:41,147:32:188:0.782:2	0/1:115,74:32:189:0.392:2	0/1:158,36:32:194:0.186:2	0/1:164,26:32:190:0.137:2	0/1:120,78:32:198:0.394:2	0/1:162,30:32:192:0.156:2	0/1:77,103:32:181:0.572:2
chr1	152279414	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:33:33:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152279527	rs200423945	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:62,14:32:76:0.184:2	0/1:155,37:32:193:0.193:2	./.	./.	0/1:164,32:32:196:0.163:2	0/1:161,35:33:196:0.179:2	./.	0/1:164,22:32:186:0.118:2	./.
chr1	152279663	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,5:31:185:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	152279729	rs3126072	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,7:30:20:0.350:2	0/1:76,92:30:168:0.548:2	./.	./.	0/1:71,78:31:149:0.523:2	0/1:74,87:30:161:0.540:2	./.	0/1:81,53:31:134:0.396:2	./.
chr1	152279841	rs3126074	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,14:32:22:0.636:2	0/1:69,122:32:193:0.639:2	./.	./.	0/1:86,92:32:178:0.517:2	0/1:75,95:32:170:0.559:2	./.	0/1:96,88:33:184:0.478:2	./.
chr1	152279920	rs55650366	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:29:18:0.444:2	0/1:88,98:30:186:0.527:2	./.	./.	0/1:90,98:29:188:0.521:2	0/1:81,107:29:188:0.569:2	./.	0/1:78,88:29:166:0.530:2	./.
chr1	152280032	rs71625200	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,13:29:23:0.565:2	0/1:82,108:30:191:0.568:2	./.	./.	0/1:96,90:29:186:0.484:2	0/1:73,109:29:182:0.599:2	./.	0/1:96,88:30:184:0.478:2	./.
chr1	152280170	rs71625201	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,12:32:41:0.293:2	0/1:110,71:32:181:0.392:2	./.	./.	0/1:125,63:32:188:0.335:2	0/1:117,69:32:186:0.371:2	./.	0/1:111,71:32:183:0.390:2	./.
chr1	152280250	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152280265	rs71625202	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:32:25:0.360:2	0/1:138,42:32:180:0.233:2	./.	./.	0/1:121,17:31:138:0.123:2	0/1:124,25:31:149:0.168:2	./.	0/1:112,41:32:153:0.268:2	./.
chr1	152280347	rs139476473	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,4:30:29:0.138:2	0/1:157,29:30:186:0.156:2	./.	./.	0/1:128,24:30:152:0.158:2	0/1:163,29:30:193:0.151:2	./.	0/1:130,24:29:154:0.156:2	./.
chr1	152280372	rs142776569	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,9:32:31:0.290:2	0/1:140,53:31:193:0.275:2	./.	./.	0/1:130,61:31:191:0.319:2	0/1:136,60:32:196:0.306:2	./.	0/1:126,42:32:168:0.250:2	./.
chr1	152280471	rs78179835	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,23:32:72:0.319:2	0/1:135,57:33:192:0.297:2	./.	./.	0/1:134,65:32:199:0.327:2	0/1:129,65:32:194:0.335:2	./.	0/1:148,47:33:195:0.241:2	./.
chr1	152280559	rs150122015	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,5:29:35:0.143:2	0/1:129,22:28:151:0.146:2	./.	./.	0/1:115,8:26:123:0.065:2	0/1:142,20:27:162:0.123:2	./.	0/1:132,13:27:145:0.090:2	./.
chr1	152280573	rs76471961	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,11:32:142:0.077:2	./.	./.	0/1:110,5:32:115:0.043:2	0/1:148,14:32:162:0.086:2	./.	./.	./.
chr1	152280736	rs78974621	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,14:31:158:0.089:2	./.	./.	./.	0/1:158,11:28:169:0.065:2	./.	0/1:146,12:30:159:0.076:2	./.
chr1	152280759	rs2338554	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,28:29:160:0.175:2	./.	./.	0/1:149,8:29:157:0.051:2	0/1:152,18:29:170:0.106:2	./.	0/1:145,20:27:165:0.121:2	./.
chr1	152280782	rs2184953	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,23:32:41:0.561:2	0/1:67,81:33:148:0.547:2	./.	./.	0/1:94,78:32:172:0.453:2	0/1:61,108:33:169:0.639:2	./.	0/1:73,86:32:159:0.541:2	./.
chr1	152280787	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,6:34:183:0.033:2	./.	./.	./.	./.	./.	./.
chr1	152280788	rs66954353	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,8:31:49:0.163:2	0/1:128,23:32:151:0.152:2	./.	./.	0/1:157,15:31:172:0.087:2	0/1:153,20:31:173:0.116:2	./.	0/1:145,19:32:164:0.116:2	./.
chr1	152280864	rs2184954	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,22:32:41:0.537:2	0/1:87,98:31:185:0.530:2	0/1:187,9:30:196:0.046:2	./.	0/1:84,97:31:181:0.536:2	0/1:84,96:32:180:0.533:2	./.	0/1:96,88:31:184:0.478:2	0/1:175,9:32:184:0.049:2
chr1	152280900	rs74129452	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,12:30:53:0.226:2	0/1:142,53:30:195:0.272:2	./.	./.	0/1:130,63:29:193:0.326:2	0/1:129,55:28:184:0.299:2	./.	0/1:139,54:29:193:0.280:2	./.
chr1	152281007	rs7512553	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,16:32:53:0.302:2	0/1:126,40:31:166:0.241:2	./.	./.	0/1:121,55:31:176:0.313:2	0/1:130,55:31:186:0.297:2	./.	0/1:123,60:32:183:0.328:2	./.
chr1	152281008	rs7512554	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,15:32:52:0.288:2	0/1:125,40:31:165:0.242:2	./.	./.	0/1:121,55:31:176:0.313:2	0/1:131,55:31:186:0.296:2	./.	0/1:124,60:31:184:0.326:2	./.
chr1	152281039	rs7522925	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,13:31:39:0.333:2	0/1:136,48:31:184:0.261:2	./.	./.	0/1:114,60:32:174:0.345:2	0/1:123,56:31:179:0.313:2	./.	0/1:116,65:31:181:0.359:2	./.
chr1	152281228	rs7546186	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,12:32:39:0.308:2	0/1:135,59:32:194:0.304:2	0/1:173,6:30:179:0.034:2	./.	0/1:140,45:32:185:0.243:2	0/1:135,48:32:183:0.262:2	./.	0/1:124,55:31:179:0.307:2	./.
chr1	152281246	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,5:28:194:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr1	152281290	rs80353812	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:76,5:31:81:0.062:2	0/1:20,5:32:25:0.200:2	0/1:132,61:29:193:0.316:2	./.	./.	0/1:152,42:29:194:0.216:2	0/1:131,53:30:185:0.288:2	./.	0/1:112,52:29:165:0.317:2	0/1:99,6:28:105:0.057:2
chr1	152281304	rs7512857	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,6:31:28:0.214:2	0/1:135,56:29:191:0.293:2	./.	./.	0/1:148,42:29:190:0.221:2	0/1:134,58:30:192:0.302:2	./.	0/1:126,52:31:178:0.292:2	./.
chr1	152281479	rs3126079	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,30:31:42:0.714:2	0/1:57,123:32:180:0.683:2	./.	./.	0/1:57,116:32:174:0.671:2	0/1:69,109:32:178:0.612:2	./.	0/1:56,122:32:178:0.685:2	./.
chr1	152281523	rs80059102	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,11:32:32:0.344:2	0/1:150,37:32:187:0.198:2	./.	./.	0/1:140,35:32:177:0.200:2	0/1:144,39:32:183:0.213:2	./.	0/1:131,37:32:168:0.220:2	./.
chr1	152281534	rs113544881	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,8:32:28:0.286:2	0/1:142,36:32:178:0.202:2	./.	./.	0/1:146,30:32:176:0.170:2	0/1:156,36:31:192:0.188:2	./.	0/1:150,33:32:184:0.180:2	./.
chr1	152281621	rs34806697	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,76:30:189:0.402:2	./.	./.	./.	./.	./.	./.	./.
chr1	152281635	rs112627337	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr1	152281646	rs144574658	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	152281690	rs12407748	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,7:31:27:0.259:2	0/1:96,92:32:188:0.489:2	./.	./.	0/1:89,98:32:187:0.524:2	0/1:90,82:32:172:0.477:2	./.	0/1:88,88:32:176:0.500:2	./.
chr1	152281948	rs12405241	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,20:30:27:0.741:2	0/1:95,85:31:181:0.472:2	./.	./.	0/1:89,86:31:175:0.491:2	0/1:106,82:31:188:0.436:2	./.	0/1:88,88:30:176:0.500:2	./.
chr1	152282267	rs12405278	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,17:31:28:0.607:2	0/1:80,74:31:154:0.481:2	./.	./.	0/1:85,68:31:153:0.444:2	0/1:117,63:31:180:0.350:2	./.	0/1:56,52:30:108:0.481:2	./.
chr1	152282311	rs12407807	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,18:31:32:0.563:2	0/1:102,77:30:179:0.430:2	./.	./.	0/1:93,81:31:174:0.466:2	0/1:120,72:30:192:0.375:2	./.	0/1:62,71:30:133:0.534:2	./.
chr1	152282596	rs143520776	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152282917	rs11204978	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,15:29:38:0.395:2	0/1:89,94:29:183:0.514:2	./.	./.	0/1:110,80:29:190:0.421:2	0/1:129,57:28:186:0.306:2	./.	0/1:110,73:30:183:0.399:2	./.
chr1	152283193	rs139061200	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,5:29:163:0.031:2	./.	0/1:130,5:30:136:0.037:2	./.	./.	./.	0/1:121,6:28:127:0.047:2	./.
chr1	152283236	rs11581433	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,5:32:154:0.032:2	./.	0/1:10,4:27:14:0.286:2	0/1:75,68:29:143:0.476:2	./.	0/1:152,5:32:157:0.032:2	0/1:84,59:30:143:0.413:2	0/1:61,78:29:139:0.561:2	./.	0/1:61,53:30:114:0.465:2	./.
chr1	152283283	rs11586631	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:30:15:0.533:2	0/1:81,82:30:163:0.503:2	./.	./.	0/1:94,68:30:162:0.420:2	0/1:65,66:30:131:0.504:2	./.	0/1:71,66:29:137:0.482:2	./.
chr1	152283291	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,5:27:177:0.028:2	./.	./.	./.	./.
chr1	152283297	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:33:183:0.027:2	./.	./.	./.	./.
chr1	152283604	rs139539067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,84:31:188:0.447:2	./.
chr1	152283783	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr1	152283862	rs58001094	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,9:33:26:0.346:2	0/1:97,87:32:184:0.473:2	./.	./.	0/1:109,75:32:184:0.408:2	0/1:107,74:31:181:0.409:2	./.	0/1:117,73:31:190:0.384:2	0/1:162,5:33:167:0.030:2
chr1	152283922	rs145475870	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,103:32:183:0.563:2	./.
chr1	152283975	rs66831674	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,5:30:19:0.263:2	0/1:112,59:29:172:0.345:2	./.	./.	0/1:115,35:29:150:0.233:2	0/1:104,55:29:159:0.346:2	./.	0/1:94,57:29:151:0.377:2	./.
chr1	152284377	rs373872833	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	./.	0/1:173,5:30:178:0.028:2	0/1:181,9:32:190:0.047:2	./.	./.	./.
chr1	152284424	rs12756586	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,8:33:188:0.043:2	./.	./.	0/1:129,11:33:141:0.079:2	0/1:156,13:32:169:0.077:2	./.	0/1:169,16:33:185:0.086:2	0/1:170,6:31:177:0.034:2
chr1	152284450	rs146104019	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,8:31:190:0.042:2	./.	./.	0/1:156,6:33:163:0.037:2	0/1:179,6:33:186:0.032:2	./.	0/1:183,7:33:190:0.037:2	./.
chr1	152284478	rs199888588	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,8:29:174:0.046:2	0/1:175,6:31:182:0.033:2	./.	0/1:162,18:28:181:0.100:2	./.
chr1	152284497	rs144437056	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:32:187:0.043:2	0/1:180,5:30:185:0.027:2	./.	0/1:172,9:33:181:0.050:2	./.
chr1	152284505	rs201137357	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:32:187:0.043:2	0/1:185,5:31:190:0.026:2	./.	0/1:180,6:31:187:0.032:2	./.
chr1	152284524	rs149967165	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,18:31:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152284549	rs141646551	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,6:33:192:0.031:2	./.	./.	0/1:169,18:33:187:0.096:2	0/1:169,10:33:179:0.056:2	./.	0/1:166,15:32:181:0.083:2	0/1:184,4:33:188:0.021:2
chr1	152284678	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,3:31:38:0.079:2	./.	./.	./.	0/1:185,6:33:191:0.031:2	./.	./.	./.	./.
chr1	152284717	rs369239278	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,86:30:191:0.450:2	./.	./.	./.
chr1	152284806	rs71625190	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,8:32:186:0.043:2	0/1:186,6:32:192:0.031:2	./.	0/1:159,9:32:168:0.054:2	./.
chr1	152284814	rs71625191	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:32:188:0.027:2	0/1:190,5:31:195:0.026:2	./.	0/1:180,6:33:187:0.032:2	./.
chr1	152284823	rs74129459	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:23:191:0.032:2	./.	0/1:187,4:33:191:0.021:2	./.
chr1	152284854	rs3120653	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,12:29:32:0.375:2	0/1:92,94:29:186:0.505:2	./.	./.	0/1:95,94:29:189:0.497:2	0/1:91,96:29:187:0.513:2	./.	0/1:104,83:30:187:0.444:2	./.
chr1	152285020	rs138055273	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:31:162:0.031:2
chr1	152285067	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,9:24:155:0.058:2
chr1	152285071	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	0/1:146,10:27:156:0.064:2
chr1	152285099	rs74129461	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:32:29:0.379:2	0/1:93,79:31:172:0.459:2	./.	./.	0/1:103,53:32:156:0.340:2	0/1:123,46:31:169:0.272:2	./.	0/1:104,63:31:167:0.377:2	./.
chr1	152285113	rs150957860	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,11:31:144:0.076:2	0/1:84,7:30:91:0.077:2	./.	./.	./.	0/1:150,8:27:158:0.051:2	./.	./.	0/1:146,7:31:153:0.046:2	0/1:151,7:31:158:0.044:2	0/1:129,8:32:137:0.058:2
chr1	152285117	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.
chr1	152285119	rs201522026	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:125,13:31:139:0.094:2	0/1:83,8:31:91:0.088:2	./.	0/1:151,7:32:158:0.044:2	./.	0/1:144,8:29:152:0.053:2	0/1:155,5:31:160:0.031:2	0/1:164,12:31:176:0.068:2	0/1:138,8:32:146:0.055:2	0/1:143,12:31:155:0.077:2	0/1:125,4:32:129:0.031:2
chr1	152285122	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.
chr1	152285137	rs3120654	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,12:31:134:0.090:2	0/1:87,8:31:95:0.084:2	./.	0/1:152,10:30:162:0.062:2	./.	0/1:141,7:30:148:0.047:2	0/1:145,10:28:155:0.065:2	0/1:157,16:30:173:0.092:2	0/1:133,9:32:142:0.063:2	0/1:119,12:30:132:0.092:2	0/1:131,7:31:138:0.051:2
chr1	152285188	rs3120655	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,6:28:154:0.039:2	0/1:148,5:31:153:0.033:2	./.	./.	0/1:139,4:31:143:0.028:2
chr1	152285195	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.
chr1	152285327	rs113685999	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2
chr1	152285358	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:29:196:0.031:2	0/1:189,6:28:195:0.031:2	./.	./.	./.
chr1	152285370	rs113652604	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.	0/1:188,7:32:195:0.036:2
chr1	152285405	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.
chr1	152285425	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,5:30:187:0.027:2	./.	./.	./.	0/1:187,5:31:192:0.026:2	./.	./.	./.
chr1	152285844	rs146928262	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:27:176:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152285930	rs11584340	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,11:31:32:0.344:2	0/1:98,87:31:185:0.470:2	./.	./.	0/1:102,86:31:188:0.457:2	0/1:95,97:31:192:0.505:2	./.	0/1:93,90:31:183:0.492:2	./.
chr1	152285959	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:32:186:0.027:2	./.	./.
chr1	152286002	rs2011331	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,18:30:38:0.474:2	0/1:91,89:29:181:0.494:2	./.	./.	0/1:103,80:30:183:0.437:2	0/1:99,94:29:193:0.487:2	./.	0/1:95,86:29:181:0.475:2	./.
chr1	152286032	rs11588170	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,17:31:36:0.472:2	0/1:96,90:30:186:0.484:2	./.	./.	0/1:103,88:31:191:0.461:2	0/1:101,89:31:190:0.468:2	./.	0/1:89,88:31:177:0.497:2	./.
chr1	152286126	rs11582620	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,55:30:139:0.396:2	./.	./.	./.	0/1:83,41:31:124:0.331:2	./.	0/1:51,44:29:95:0.463:2
chr1	152286367	rs41267154	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,13:31:35:0.371:2	0/1:95,76:30:171:0.444:2	./.	./.	0/1:82,63:31:145:0.434:2	0/1:101,74:31:175:0.423:2	./.	0/1:78,71:30:150:0.477:2	./.
chr1	152323132	rs12568784	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	0/1:111,86:31:197:0.437:2	0/1:120,79:31:199:0.397:2	./.	0/1:108,87:31:195:0.446:2	./.
chr1	152324099	rs77345168	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,4:35:173:0.023:2	./.	./.	./.	./.	./.	./.
chr1	152324146	rs141276572	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152325732	rs12022217	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	./.	./.	0/1:82,69:31:151:0.457:2	0/1:101,71:31:172:0.413:2	./.	0/1:82,99:31:181:0.547:2	./.
chr1	152325874	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.
chr1	152325884	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.
chr1	152325990	rs140606934	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:104,6:33:110:0.055:2	./.	0/1:177,5:28:182:0.027:2	./.	./.	0/1:161,5:31:166:0.030:2	./.	./.	./.	0/1:178,5:30:183:0.027:2
chr1	152326013	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:34:145:0.028:2	./.	./.	./.	./.
chr1	152327389	rs12411129	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,29:28:106:0.276:2	0/1:48,13:30:61:0.213:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152327469	rs76514540	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.	./.	0/1:93,43:32:136:0.316:2	0/1:114,39:32:153:0.255:2	./.	0/1:96,38:31:134:0.284:2	./.
chr1	152327502	rs138997916	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	0/1:107,17:32:124:0.137:2	0/1:132,12:31:144:0.083:2	./.	0/1:95,20:32:116:0.174:2	./.
chr1	152327526	rs12758283	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr1	152327607	rs12758450	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,20:31:128:0.156:2	0/1:71,12:32:83:0.145:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152327633	rs144938115	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,45:32:167:0.269:2	0/1:65,22:32:87:0.253:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152327667	rs12738471	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,8:33:188:0.043:2	0/1:168,8:30:176:0.045:2	./.	0/1:135,10:32:145:0.069:2	./.
chr1	152327810	rs201979853	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:165,4:32:169:0.024:2	0/1:110,4:32:114:0.035:2	0/1:16,3:33:19:0.158:2	./.	./.	./.	./.	0/1:174,5:32:179:0.028:2	./.	0/1:174,6:32:180:0.033:2	./.
chr1	152327955	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:164,5:32:169:0.030:2	./.	./.	./.	0/1:162,5:29:167:0.030:2	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2
chr1	152327982	rs369481025	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2
chr1	152328059	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2
chr1	152328151	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.
chr1	152328411	rs6679449	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.	0/1:116,21:31:137:0.153:2	0/1:125,32:33:157:0.204:2	./.	0/1:93,42:33:135:0.311:2	0/1:179,5:33:184:0.027:2
chr1	152328507	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:29:160:0.031:2
chr1	152328515	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2
chr1	152329369	rs2282302	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,28:32:79:0.354:2	./.	0/1:50,44:32:94:0.468:2	./.	./.	0/1:58,49:34:107:0.458:2	./.	./.
chr1	152329435	rs2282303	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	0/1:48,36:32:84:0.429:2	0/1:47,37:32:84:0.440:2	./.	0/1:45,30:32:75:0.400:2	./.
chr1	152331240	rs3818831	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:30:15:0.733:2	./.	./.	./.	0/1:22,21:31:43:0.488:2	0/1:33,37:31:70:0.529:2	./.	0/1:30,18:31:48:0.375:2	./.
chr1	152382120	rs3829868	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:32:12:0.750:2	./.	./.	./.	0/1:75,45:32:121:0.375:2	0/1:52,55:32:107:0.514:2	./.	0/1:0,60:32:60:1.00:2	./.
chr1	152484129	rs2105117	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:40,41:28:81:0.506:2	0/1:0,28:29:28:1.00:2	0/1:0,70:29:70:1.00:2	0/1:37,21:30:58:0.362:2	0/1:2,60:29:62:0.968:2	0/1:20,19:29:39:0.487:2	0/1:0,44:30:44:1.00:2	0/1:29,26:30:55:0.473:2
chr1	152484505	rs61813870	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,80:32:174:0.460:2	./.	./.	./.	./.
chr1	152487979	rs2282296	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.
chr1	152488063	rs1053588	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,3:31:3:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,5:32:5:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,3:32:3:1.00:2
chr1	152488428	rs1053590	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,9:33:9:1.00:2	0/1:18,12:32:30:0.400:2	0/1:0,29:33:29:1.00:2	0/1:0,55:32:55:1.00:2	0/1:19,16:33:35:0.457:2	0/1:0,41:32:41:1.00:2	0/1:33,22:33:55:0.400:2	0/1:0,31:31:31:1.00:2	0/1:27,33:31:60:0.550:2
chr1	152538557	rs202162896	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,5:30:73:0.068:2	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.
chr1	152552285	rs512208	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:31:14:0.571:2	0/1:7,86:30:93:0.925:2	0/1:24,36:30:60:0.600:2	./.	./.	0/1:52,48:31:100:0.480:2	0/1:32,29:31:61:0.475:2	./.	./.
chr1	152586354	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2	./.	./.
chr1	152586440	rs143382064	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,26:32:26:1.00:2
chr1	152595528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.
chr1	152636843	rs9793541	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:30:18:1.00:2	0/1:6,7:30:13:0.538:2	./.	./.	0/1:7,5:28:12:0.417:2	0/1:9,9:29:18:0.500:2	./.	./.
chr1	152648491	rs12073860	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.	./.	./.
chr1	152648675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr1	152659805	rs41310873	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:31:7:0.857:2	0/1:2,53:31:55:0.964:2	0/1:11,12:30:23:0.522:2	./.	./.	0/1:15,33:30:48:0.688:2	0/1:16,20:31:36:0.556:2	./.	./.
chr1	152659848	rs41308367	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:1,39:32:40:0.975:2	0/1:3,8:31:11:0.727:2	./.	./.	0/1:2,12:32:14:0.857:2	0/1:6,6:33:12:0.500:2	./.	./.
chr1	152671385	rs80271068	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	0/1:10,7:30:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152671387	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:33:41:0.415:2
chr1	152671388	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:33:41:0.415:2
chr1	152681603	rs41268472	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,35:33:85:0.412:2	0/1:43,28:33:71:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152692074	rs1332500	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:0,116:30:116:1.00:2	0/1:65,77:30:142:0.542:2	./.	0/1:88,64:30:153:0.421:2	0/1:54,65:31:119:0.546:2	0/1:64,43:32:107:0.402:2	./.	./.
chr1	152692271	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,73:32:157:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr1	152692472	rs873775	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:33:14:0.500:2	0/1:0,120:32:120:1.00:2	0/1:68,61:31:129:0.473:2	./.	0/1:67,58:32:125:0.464:2	0/1:85,67:31:152:0.441:2	0/1:67,71:33:138:0.514:2	./.	./.
chr1	152692512	rs41268474	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,37:31:91:0.407:2	0/1:24,22:31:46:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152692588	rs944682	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:30:17:0.353:2	0/1:1,143:29:144:0.993:2	0/1:52,71:29:123:0.577:2	./.	0/1:60,65:28:125:0.520:2	0/1:68,58:28:126:0.460:2	0/1:72,66:29:138:0.478:2	./.	./.
chr1	152692781	rs3814350	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:31:15:0.467:2	0/1:0,125:30:125:1.00:2	0/1:111,61:31:172:0.355:2	./.	0/1:98,74:30:172:0.430:2	0/1:109,70:30:179:0.391:2	0/1:89,65:32:154:0.422:2	./.	./.
chr1	152692803	rs41268476	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	0/1:63,58:33:121:0.479:2	./.	./.	./.	./.	0/1:88,72:33:160:0.450:2
chr1	152692862	rs3814351	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:33:17:0.294:2	0/1:0,85:32:85:1.00:2	0/1:58,42:32:100:0.420:2	./.	0/1:87,34:32:121:0.281:2	0/1:87,39:32:126:0.310:2	0/1:81,54:33:135:0.400:2	./.	./.
chr1	152732106	rs17612167	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,91:31:188:0.484:2	0/1:94,76:30:170:0.447:2	./.	0/1:111,75:31:186:0.403:2	./.	0/1:98,64:31:162:0.395:2	0/1:87,75:32:162:0.463:2
chr1	152732174	rs944683	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,69:32:149:0.463:2	0/1:36,54:32:90:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152732436	rs4845480	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,75:32:181:0.414:2	0/1:90,71:32:161:0.441:2	0/1:0,35:32:35:1.00:2	0/1:1,188:32:189:0.995:2	0/1:88,104:32:192:0.542:2	0/1:102,90:32:192:0.469:2	0/1:105,86:33:191:0.450:2	0/1:109,84:33:193:0.435:2	0/1:115,78:33:193:0.404:2	./.	0/1:103,91:33:194:0.469:2
chr1	152732567	rs16834461	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,58:31:118:0.492:2	0/1:42,35:32:77:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152732955	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,10:14:39:0.256:2	./.	./.	./.	0/1:31,14:12:45:0.311:2	./.	0/1:34,7:20:41:0.171:2
chr1	152733301	rs4329520	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,73:32:154:0.474:2	0/1:37,50:32:87:0.575:2	0/1:0,22:32:22:1.00:2	0/1:0,182:32:182:1.00:2	0/1:113,83:31:196:0.423:2	0/1:100,80:32:180:0.444:2	0/1:108,84:32:192:0.438:2	0/1:106,82:31:188:0.436:2	0/1:93,89:32:182:0.489:2	./.	0/1:92,67:32:159:0.421:2
chr1	152734187	rs11581045	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,84:29:84:1.00:2	0/1:43,35:28:78:0.449:2	0/1:59,25:29:84:0.298:2	0/1:62,34:29:96:0.354:2	0/1:49,42:29:92:0.462:2	0/1:51,53:29:104:0.510:2	./.	0/1:60,26:29:86:0.302:2
chr1	152734390	rs2297487	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,58:31:130:0.446:2	0/1:56,45:32:101:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152748982	rs1758785	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:30:43:0.140:2	./.	./.	./.	./.
chr1	152749008	rs200931119	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,5:33:47:0.106:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152749022	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:32:25:0.125:2	./.	./.	./.	./.
chr1	152749063	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:30:27:0.296:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152749066	rs200400135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:28:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152749072	rs201433041	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,8:31:32:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152749091	rs41268480	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:29:12:0.583:2	0/1:8,27:29:35:0.771:2	./.	0/1:4,10:29:15:0.714:2	./.	0/1:12,15:31:27:0.556:2	0/1:4,3:29:7:0.429:2
chr1	152759950	rs11205106	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,16:29:39:0.410:2	0/1:21,13:30:34:0.382:2	0/1:0,9:30:9:1.00:2	0/1:0,35:30:35:1.00:2	0/1:26,12:27:38:0.316:2	0/1:34,26:29:60:0.433:2	0/1:21,12:28:33:0.364:2	0/1:37,22:30:61:0.373:2	0/1:25,24:30:50:0.490:2	./.	0/1:3,34:29:37:0.919:2
chr1	152760075	rs201660535	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,14:29:140:0.100:2	0/1:72,6:28:78:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,6:28:145:0.041:2
chr1	152760093	rs112600788	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,10:30:167:0.060:2	0/1:101,6:31:107:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:33:190:0.037:2
chr1	152760096	rs115864544	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,10:31:172:0.058:2	0/1:105,5:31:110:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,7:32:189:0.037:2
chr1	152760106	rs56313719	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,66:32:198:0.333:2	./.	./.	./.
chr1	152760352	rs61814474	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,48:30:196:0.246:2	0/1:123,72:30:195:0.369:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,73:30:195:0.374:2
chr1	152760393	rs75873017	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:32:17:0.529:2	./.	./.	0/1:188,7:31:195:0.036:2	0/1:191,7:26:198:0.035:2	0/1:182,7:31:189:0.037:2	./.	./.
chr1	152760400	rs74994203	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:28:12:0.250:2	./.	./.	0/1:192,5:32:197:0.025:2	0/1:193,5:29:198:0.025:2	./.	./.	./.
chr1	152760558	rs114470093	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,28:32:144:0.194:2	0/1:87,18:32:105:0.171:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,32:33:94:0.340:2
chr1	152760628	rs12038374	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,11:33:86:0.128:2	0/1:51,10:33:61:0.164:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:34:33:0.364:2
chr1	152760651	rs12048712	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,8:32:73:0.110:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2
chr1	152770446	rs7527180	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2
chr1	152770503	rs41268490	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,10:31:57:0.175:2	0/1:24,6:32:30:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152770521	rs41268492	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,73:31:100:0.730:2	0/1:29,36:32:65:0.554:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,24:32:24:1.00:2
chr1	152770533	rs41268494	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,52:31:141:0.369:2	0/1:54,26:31:80:0.325:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:31:45:0.556:2
chr1	152770589	rs11485496	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,132:28:183:0.725:2	0/1:61,128:27:189:0.677:2	./.	0/1:1,5:27:6:0.833:2	./.	./.	./.	./.	./.	./.	0/1:2,189:25:191:0.990:2
chr1	152770828	rs115138530	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,6:33:119:0.050:2	0/1:117,5:32:122:0.041:2	0/1:0,25:33:25:1.00:2	0/1:1,182:33:183:0.995:2	0/1:114,57:33:171:0.333:2	0/1:122,74:32:196:0.378:2	0/1:142,55:32:198:0.279:2	0/1:139,58:33:197:0.294:2	0/1:128,64:33:192:0.333:2	./.	0/1:0,107:32:108:1.00:2
chr1	152771040	rs1610464	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:27:113:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152771207	rs11205108	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	0/1:27,15:30:42:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,37:30:80:0.463:2
chr1	152771293	rs2065206	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,8:32:26:0.308:2	0/1:9,6:32:15:0.400:2	0/1:0,6:31:6:1.00:2	0/1:0,45:32:45:1.00:2	0/1:17,12:31:29:0.414:2	0/1:22,18:31:40:0.450:2	0/1:5,13:30:18:0.722:2	0/1:10,11:32:21:0.524:2	0/1:12,15:33:27:0.556:2	./.	0/1:0,25:31:25:1.00:2
chr1	152771360	rs11205109	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:32:38:0.342:2	0/1:7,8:31:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:32:35:0.543:2
chr1	152777838	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	0/1:56,6:33:63:0.097:2	./.
chr1	152777868	rs36107483	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:25:5:1.00:2	0/1:0,42:31:42:1.00:2	0/1:24,18:28:42:0.429:2	0/1:43,20:31:63:0.317:2	0/1:25,22:28:47:0.468:2	0/1:30,29:29:59:0.492:2	0/1:27,22:30:49:0.449:2	./.	0/1:30,20:30:51:0.400:2
chr1	152777908	rs2006940	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,16:26:42:0.381:2	0/1:19,10:29:29:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,38:26:68:0.559:2
chr1	152777964	rs17624493	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:0,62:32:62:1.00:2	0/1:25,38:32:63:0.603:2	0/1:54,27:32:81:0.333:2	0/1:44,30:32:74:0.405:2	0/1:57,36:32:93:0.387:2	0/1:31,39:33:70:0.557:2	./.	0/1:35,38:33:73:0.521:2
chr1	152785170	rs56056379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:29:55:0.400:2	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2
chr1	152856935	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.
chr1	152882574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:34:34:0.118:2	./.	./.	./.
chr1	152882610	rs2229496	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,23:33:54:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr1	152882979	rs17855670	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,6:31:24:0.250:2	0/1:19,4:32:23:0.174:2	0/1:24,6:32:30:0.200:2	0/1:25,4:30:29:0.138:2	./.	./.	0/1:14,3:32:17:0.176:2
chr1	152882981	rs62637699	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,6:32:26:0.231:2	0/1:19,4:32:23:0.174:2	0/1:25,6:30:31:0.194:2	0/1:26,4:32:30:0.133:2	./.	./.	0/1:17,3:33:20:0.150:2
chr1	152882982	rs7520711	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:31:13:0.385:2	0/1:19,7:31:26:0.269:2	0/1:19,4:32:23:0.174:2	0/1:25,6:32:31:0.194:2	0/1:24,6:32:30:0.200:2	./.	./.	0/1:17,3:31:20:0.150:2
chr1	152883051	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr1	152883056	rs45609438	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:36:77:0.052:2	0/1:92,6:31:98:0.061:2	./.	./.	./.	./.
chr1	152883063	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.
chr1	152883164	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:27:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152883532	rs201506560	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,7:21:81:0.086:2	0/1:48,8:17:57:0.143:2	./.	0/1:73,11:17:84:0.131:2	./.	./.	0/1:27,8:23:35:0.229:2
chr1	152883608	rs7545413	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:30:83:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr1	152883680	rs7535306	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,47:32:90:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr1	152883711	rs7545520	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,32:33:63:0.508:2	./.	./.	./.	./.	./.	./.	./.
chr1	152884111	rs913996	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,43:31:83:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr1	152884226	rs41272534	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,32:32:58:0.552:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152884246	rs12407682	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,32:31:75:0.427:2	./.	./.	./.	0/1:72,4:30:76:0.053:2	./.	./.	./.
chr1	152884247	rs12406539	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,33:32:75:0.440:2	./.	./.	./.	0/1:75,4:28:79:0.051:2	./.	./.	./.
chr1	152944556	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr1	152944594	rs3170863	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,18:30:29:0.621:2	0/1:92,70:29:162:0.432:2	0/1:92,76:29:168:0.452:2	0/1:1,184:29:185:0.995:2	0/1:102,93:29:195:0.477:2	./.	0/1:103,81:30:184:0.440:2	0/1:78,70:29:149:0.473:2	0/1:2,159:30:163:0.988:2
chr1	152957793	rs200895784	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.	./.	./.	./.
chr1	152957832	rs1611762	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,27:30:79:0.342:2	0/1:66,33:30:99:0.333:2	0/1:7,99:30:107:0.934:2	0/1:41,39:30:80:0.488:2	0/1:105,5:31:110:0.045:2	0/1:32,28:30:60:0.467:2	0/1:36,20:32:56:0.357:2	0/1:3,52:31:55:0.945:2
chr1	152957887	rs1611764	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,41:31:83:0.494:2	0/1:53,30:31:83:0.361:2	0/1:3,80:30:83:0.964:2	0/1:35,41:31:76:0.539:2	./.	0/1:31,27:31:58:0.466:2	0/1:32,19:32:51:0.373:2	0/1:2,38:30:40:0.950:2
chr1	152958165	rs1611768	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,78:32:150:0.520:2	./.	./.	./.	./.	./.	./.	./.
chr1	152958238	rs1129654	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,4:33:149:0.027:2	./.	0/1:9,16:33:25:0.640:2	0/1:108,67:32:175:0.383:2	0/1:76,45:32:121:0.372:2	0/1:1,131:32:133:0.992:2	0/1:102,77:32:179:0.430:2	0/1:194,4:33:198:0.020:2	0/1:124,67:33:191:0.351:2	0/1:90,66:32:156:0.423:2	0/1:2,163:32:167:0.988:2
chr1	152958267	rs1129655	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,4:34:139:0.029:2	./.	0/1:4,10:32:14:0.714:2	0/1:102,59:32:161:0.366:2	0/1:80,46:32:126:0.365:2	0/1:2,133:32:135:0.985:2	0/1:88,76:33:164:0.463:2	./.	0/1:117,65:34:182:0.357:2	0/1:88,55:33:143:0.385:2	0/1:2,169:33:171:0.988:2
chr1	152975495	rs2075739	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:31:13:0.385:2	0/1:83,59:31:142:0.415:2	0/1:61,28:30:89:0.315:2	0/1:0,97:31:97:1.00:2	0/1:76,63:32:139:0.453:2	./.	0/1:81,59:32:140:0.421:2	0/1:70,32:30:102:0.314:2	0/1:0,127:32:127:1.00:2
chr1	152975715	rs28989168	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,8:28:47:0.170:2	0/1:28,11:30:39:0.282:2	0/1:20,20:30:40:0.500:2	./.	./.	./.	0/1:31,11:31:43:0.262:2	0/1:17,26:28:45:0.605:2
chr1	152975739	rs17851565	T	A,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0/2:24:29:0.345:2	./.	0/1:30:69:0.092:2	./.	0/1:30:50:0.160:2	0/1:32:51:0.060:2	./.	./.	0/1:28:40:0.105:2	0/1:31:38:0.189:2
chr1	152975763	rs1977734	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,32:30:84:0.386:2	0/1:38,30:31:68:0.441:2	0/1:0,75:31:75:1.00:2	0/1:34,34:30:68:0.500:2	./.	0/1:20,36:32:57:0.643:2	0/1:31,27:31:59:0.466:2	0/1:1,44:31:46:0.978:2
chr1	152975810	rs72704847	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:32:105:0.448:2	./.	./.	./.	./.
chr1	152975829	rs1970328	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:33:10:0.800:2	0/1:98,73:33:171:0.427:2	0/1:95,89:33:184:0.484:2	0/1:0,146:32:146:1.00:2	0/1:75,70:33:145:0.483:2	./.	0/1:72,82:34:154:0.532:2	0/1:53,52:32:105:0.495:2	0/1:0,116:33:116:1.00:2
chr1	152975941	rs1055935	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:32:16:0.563:2	0/1:73,70:31:143:0.490:2	0/1:76,71:31:147:0.483:2	./.	0/1:74,73:32:147:0.497:2	0/1:189,4:34:193:0.021:2	0/1:70,65:33:135:0.481:2	0/1:84,67:32:151:0.444:2	0/1:0,165:32:165:1.00:2
chr1	152976108	rs1015996	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,20:30:81:0.250:2	0/1:29,18:29:47:0.383:2	0/1:0,60:29:60:1.00:2	0/1:50,25:29:75:0.333:2	./.	0/1:46,39:31:85:0.459:2	0/1:37,32:29:69:0.464:2	0/1:0,75:30:75:1.00:2
chr1	152976114	rs1015995	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,2:35:5:0.400:2	0/1:56,20:32:77:0.263:2	0/1:30,17:30:47:0.362:2	0/1:0,64:31:64:1.00:2	0/1:46,23:31:69:0.333:2	./.	0/1:51,39:32:90:0.433:2	0/1:34,30:32:64:0.469:2	0/1:0,76:32:77:1.00:2
chr1	152976306	rs1134220	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,27:33:64:0.422:2	0/1:26,8:34:36:0.235:2	0/1:2,42:32:44:0.955:2	0/1:15,9:30:24:0.375:2	./.	0/1:27,15:33:42:0.357:2	0/1:24,23:33:47:0.489:2	0/1:0,57:32:57:1.00:2
chr1	153004848	rs3795381	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,27:32:111:0.243:2	0/1:82,61:31:143:0.427:2	0/1:6,85:32:91:0.934:2	0/1:121,44:32:165:0.267:2	./.	0/1:92,30:32:122:0.246:2	0/1:80,31:33:111:0.279:2	0/1:0,63:31:63:1.00:2
chr1	153004853	rs3795382	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,31:30:110:0.282:2	0/1:80,63:29:143:0.441:2	0/1:5,86:30:92:0.945:2	0/1:112,46:31:158:0.291:2	./.	0/1:90,29:31:119:0.244:2	0/1:75,33:29:109:0.306:2	0/1:0,61:29:61:1.00:2
chr1	153004983	rs12195	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:54,56:31:111:0.509:2	0/1:2,50:32:52:0.962:2	0/1:1,97:31:98:0.990:2	0/1:60,50:32:110:0.455:2	0/1:130,8:32:138:0.058:2	0/1:42,51:32:93:0.548:2	0/1:41,34:33:75:0.453:2	0/1:0,75:32:75:1.00:2
chr1	153005013	rs2339500	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,11:31:67:0.167:2	./.	./.	./.	./.	./.	./.
chr1	153005156	rs2711	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,55:31:117:0.474:2	0/1:49,59:31:108:0.546:2	0/1:0,103:31:103:1.00:2	0/1:60,58:32:118:0.492:2	./.	0/1:67,72:32:139:0.518:2	0/1:48,54:32:102:0.529:2	0/1:0,141:32:142:1.00:2
chr1	153029137	rs3737864	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:48,20:29:68:0.294:2	0/1:10,51:30:61:0.836:2	0/1:50,27:31:77:0.351:2	./.	0/1:30,28:32:58:0.483:2	0/1:47,22:31:69:0.319:2	0/1:24,53:31:77:0.688:2
chr1	153043241	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	0/1:64,5:31:69:0.072:2	0/1:54,6:31:60:0.100:2	./.	0/1:68,9:33:77:0.117:2	./.	0/1:78,8:30:86:0.093:2
chr1	153066072	rs3737865	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,25:33:100:0.253:2	0/1:61,27:33:88:0.307:2	./.	./.	0/1:80,81:33:161:0.503:2	./.	./.	./.	./.	./.	./.
chr1	153066098	rs200356708	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,20:31:97:0.206:2	0/1:53,15:31:68:0.221:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153066113	rs199729907	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,14:31:81:0.173:2	0/1:45,11:32:56:0.196:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153066153	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	0/1:64,5:31:69:0.072:2
chr1	153085080	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,7:27:184:0.038:2	./.	./.	./.	./.	./.	./.
chr1	153085152	rs151137674	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,18:29:85:0.212:2	0/1:39,12:32:51:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153190819	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:33:63:0.444:2	./.	./.	./.	./.
chr1	153191287	rs144964467	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:30:62:0.419:2	0/1:24,26:31:50:0.520:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153191512	rs10788862	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	0/1:25,22:31:47:0.468:2	0/1:23,35:32:58:0.603:2	0/1:0,59:32:59:1.00:2	0/1:15,29:31:44:0.659:2	./.
chr1	153233506	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.
chr1	153233510	rs6661601	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.	0/1:8,4:31:12:0.333:2	0/1:10,3:31:13:0.231:2	./.	./.	0/1:2,5:33:7:0.714:2	./.	./.
chr1	153233697	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.
chr1	153233701	rs1143390	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	./.	./.	./.
chr1	153234295	rs12043009	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:31:25:0.560:2	0/1:1,27:31:28:0.964:2	0/1:0,33:30:33:1.00:2	0/1:11,7:30:18:0.389:2	./.
chr1	153234503	rs139020547	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,49:31:89:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr1	153277423	rs843971	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,38:32:66:0.576:2	0/1:29,30:33:59:0.508:2	0/1:4,8:33:12:0.667:2	0/1:3,111:33:114:0.974:2	./.	0/1:63,65:32:128:0.508:2	0/1:70,54:32:124:0.435:2	0/1:70,49:32:119:0.412:2	0/1:44,35:34:79:0.443:2	0/1:47,36:32:83:0.434:2	./.
chr1	153279596	rs148550417	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,43:32:95:0.453:2	./.	./.	./.	./.	./.	./.
chr1	153279621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2
chr1	153279696	rs55991125	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:30:63:0.492:2	0/1:14,14:29:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153303252	rs41310915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:30:103:0.476:2	./.	./.	./.	./.	./.
chr1	153313044	rs12063091	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:31:22:0.545:2	0/1:8,5:33:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153314153	rs3006448	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,33:31:72:0.465:2	0/1:18,30:32:48:0.625:2	0/1:0,10:31:10:1.00:2	0/1:2,92:31:95:0.979:2	0/1:0,92:31:92:1.00:2	0/1:57,55:30:112:0.491:2	0/1:0,94:31:95:1.00:2	0/1:0,79:31:79:1.00:2	0/1:1,78:32:79:0.987:2	0/1:1,64:31:65:0.985:2	0/1:0,73:32:73:1.00:2
chr1	153315579	rs3014863	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:30:100:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,127:30:127:1.00:2	0/1:1,92:29:93:0.989:2	0/1:74,57:29:131:0.435:2	0/1:0,103:30:103:1.00:2	0/1:1,138:29:139:0.993:2	0/1:0,140:30:140:1.00:2	0/1:1,118:29:119:0.992:2	0/1:0,108:29:108:1.00:2
chr1	153317753	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	./.
chr1	153320334	rs3006457	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,20:33:47:0.426:2	0/1:15,21:32:36:0.583:2	0/1:0,4:32:4:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,22:32:22:1.00:2	0/1:22,32:32:54:0.593:2	0/1:2,18:30:20:0.900:2	0/1:0,43:32:43:1.00:2	0/1:1,46:33:47:0.979:2	0/1:0,42:32:42:1.00:2	0/1:0,63:33:63:1.00:2
chr1	153320372	rs3006458	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,28:32:60:0.467:2	0/1:26,26:33:52:0.500:2	0/1:0,4:32:4:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,36:32:36:1.00:2	0/1:31,47:32:78:0.603:2	0/1:2,53:31:55:0.964:2	0/1:1,67:32:68:0.985:2	0/1:1,61:33:62:0.984:2	0/1:0,64:33:64:1.00:2	0/1:0,93:33:93:1.00:2
chr1	153320401	rs12096209	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:33:67:0.478:2	0/1:23,22:32:45:0.489:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153390626	rs55985140	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,65:32:185:0.351:2	./.	./.	./.	0/1:122,64:32:186:0.344:2	./.	./.	./.
chr1	153391729	rs3006414	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	0/1:62,52:31:114:0.456:2	./.	./.	./.	./.	./.
chr1	153391786	rs3014813	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	0/1:26,25:32:51:0.490:2	./.	./.	./.	./.	./.
chr1	153410822	rs10888561	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,34:31:65:0.523:2	0/1:26,23:31:49:0.469:2	0/1:5,4:31:9:0.444:2	0/1:34,42:31:76:0.553:2	0/1:22,27:30:49:0.551:2	0/1:37,23:30:60:0.383:2	0/1:1,62:30:63:0.984:2	0/1:2,55:31:57:0.965:2	0/1:37,43:32:80:0.538:2	0/1:16,39:31:55:0.709:2	0/1:0,103:31:103:1.00:2
chr1	153412392	rs3006428	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,48:33:98:0.490:2	0/1:26,21:33:47:0.447:2	0/1:7,6:33:13:0.462:2	0/1:71,51:33:122:0.418:2	0/1:48,38:32:86:0.442:2	0/1:50,62:32:112:0.554:2	0/1:1,105:33:106:0.991:2	0/1:0,112:33:112:1.00:2	0/1:57,51:34:108:0.472:2	0/1:41,38:33:79:0.481:2	0/1:0,92:34:92:1.00:2
chr1	153431401	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2
chr1	153431406	rs3014837	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,178:30:181:0.989:2	0/1:1,122:32:123:0.992:2	0/1:0,35:31:35:1.00:2	0/1:0,184:31:184:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,183:31:183:1.00:2	0/1:0,186:31:186:1.00:2	0/1:1,181:31:182:0.995:2	0/1:0,171:31:172:1.00:2	0/1:102,80:29:183:0.440:2	0/1:2,177:30:179:0.989:2
chr1	153509892	rs2248745	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,69:30:156:0.442:2	0/1:65,51:29:116:0.440:2	./.
chr1	153517172	rs1050923	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,69:33:130:0.531:2	./.	./.
chr1	153520203	rs41265164	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,55:32:105:0.524:2	./.	./.
chr1	153520954	rs36022742	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	./.	./.
chr1	153534027	rs1047325	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,89:32:181:0.492:2	./.	./.
chr1	153580611	rs142651762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.
chr1	153588279	rs9792967	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:31:17:0.412:2	0/1:0,171:31:171:1.00:2	0/1:120,54:30:174:0.310:2	0/1:106,89:31:195:0.456:2	./.	0/1:101,92:31:193:0.477:2	0/1:80,85:32:165:0.515:2	0/1:2,123:31:125:0.984:2	0/1:60,75:31:135:0.556:2
chr1	153588340	rs11548103	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,126:32:127:0.992:2	0/1:0,93:31:93:1.00:2	0/1:4,15:30:19:0.789:2	./.	0/1:74,108:31:182:0.593:2	0/1:94,86:32:180:0.478:2	0/1:0,154:32:154:1.00:2	0/1:106,84:32:190:0.442:2	0/1:114,78:33:192:0.406:2	./.	0/1:112,74:31:186:0.398:2
chr1	153598801	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.
chr1	153598904	rs113541380	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:28:15:0.533:2	./.	0/1:96,63:29:159:0.396:2	./.	./.	./.	./.	./.	./.
chr1	153604029	rs1046379	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,26:30:26:1.00:2	0/1:46,18:31:64:0.281:2	./.	0/1:0,49:32:49:1.00:2	0/1:39,39:33:78:0.500:2	0/1:0,32:32:32:1.00:2	0/1:0,72:32:72:1.00:2
chr1	153631943	rs8532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,62:32:150:0.413:2	./.	./.	./.	./.	./.	./.
chr1	153636860	rs4351684	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:33:8:0.625:2	0/1:4,58:32:62:0.935:2	0/1:0,60:31:60:1.00:2	0/1:32,29:32:61:0.475:2	./.	0/1:48,32:33:80:0.400:2	0/1:37,29:33:66:0.439:2	0/1:0,54:32:54:1.00:2	0/1:46,35:32:81:0.432:2
chr1	153636865	rs138777641	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:30:60:0.417:2	./.	./.	./.	./.
chr1	153642372	rs79913857	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:27,38:32:65:0.585:2
chr1	153653039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.	./.	./.	./.	./.
chr1	153657484	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,7:19:70:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:23:69:0.087:2
chr1	153658297	rs61757359	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,57:31:118:0.483:2	./.	./.	./.	./.	./.	./.
chr1	153662332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,6:29:128:0.047:2	./.	./.	./.	./.
chr1	153662340	rs35240348	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,86:32:157:0.548:2	./.	./.	./.	./.	./.	./.
chr1	153662374	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:29:75:0.053:2	./.	./.	./.	./.	./.
chr1	153701188	rs150819290	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:31:92:0.462:2
chr1	153730207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:26:122:0.041:2	./.	./.	./.	./.	./.
chr1	153735249	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,6:34:158:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr1	153743234	rs6675978	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:30:17:0.471:2	0/1:6,7:33:13:0.538:2	./.	./.	./.	0/1:11,9:32:20:0.450:2	0/1:8,9:33:17:0.529:2	0/1:9,12:33:21:0.571:2	0/1:5,8:33:13:0.615:2	./.	0/1:17,15:33:32:0.469:2
chr1	153745128	rs6663011	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,44:33:101:0.436:2	./.	./.	./.	./.	./.	./.
chr1	153747616	rs6682411	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,20:29:58:0.345:2	./.	./.	./.	./.	./.	./.
chr1	153748219	rs36064263	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,27:30:39:0.692:2	./.	./.	./.	./.	./.	./.
chr1	153750682	rs146128753	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	./.	./.	./.	./.	./.
chr1	153750738	rs34074094	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.
chr1	153752356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2
chr1	153909069	rs1043608	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,7:27:19:0.368:2	0/1:3,142:29:145:0.979:2	0/1:82,81:29:163:0.497:2	./.	./.	./.	0/1:76,75:30:153:0.497:2	./.	./.
chr1	153910028	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:29:107:0.037:2	./.	./.	./.	./.	./.	./.
chr1	153913699	rs1110165	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:5,94:33:99:0.949:2	0/1:50,48:32:98:0.490:2	./.	./.	./.	0/1:23,36:33:59:0.610:2	./.	./.
chr1	153913770	rs2252508	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:30:11:0.455:2	0/1:4,80:32:84:0.952:2	0/1:53,40:32:93:0.430:2	0/1:44,30:32:74:0.405:2	./.	0/1:50,27:31:77:0.351:2	0/1:30,28:33:58:0.483:2	0/1:37,54:33:91:0.593:2	./.
chr1	153925070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.
chr1	153926078	rs11264680	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:32:17:0.471:2	0/1:0,49:32:49:1.00:2	0/1:33,41:31:74:0.554:2	./.	./.	./.	0/1:40,56:33:96:0.583:2	./.	./.
chr1	153932970	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,27:31:40:0.675:2	./.	./.	./.	./.
chr1	153941514	rs11264743	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:30:9:0.444:2	0/1:4,74:31:78:0.949:2	0/1:26,28:32:54:0.519:2	./.	./.	./.	0/1:47,34:31:81:0.420:2	./.	./.
chr1	153946189	rs41265209	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:28:7:0.571:2	./.	0/1:23,21:28:44:0.477:2	./.	./.	./.	./.	./.	./.
chr1	153958698	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,5:32:46:0.109:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153963281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:34:187:0.021:2	./.	./.
chr1	153963594	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.	./.
chr1	153974237	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,52:31:121:0.430:2
chr1	153994647	rs11264875	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:30:13:0.538:2	0/1:0,104:31:104:1.00:2	0/1:78,63:30:141:0.447:2	./.	./.	./.	0/1:93,63:32:156:0.404:2	./.	./.
chr1	154018655	rs183446732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,58:31:102:0.569:2	./.	./.	./.
chr1	154072601	rs139838869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,62:32:112:0.554:2	./.
chr1	154108387	rs3001361	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,95:32:95:1.00:2
chr1	154144681	rs34335016	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,54:30:107:0.505:2	./.	0/1:53,49:29:102:0.480:2	./.	0/1:40,47:30:87:0.540:2	./.
chr1	154178079	rs74957241	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:30:43:0.581:2	./.	./.	./.	./.
chr1	154178724	rs41305088	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,45:32:98:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr1	154184846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr1	154192805	rs368781363	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:30:65:0.516:2	./.	./.	./.	./.	./.
chr1	154201129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2
chr1	154228171	rs141405066	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.
chr1	154245917	rs13796	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	0/1:35,37:31:73:0.514:2	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.
chr1	154293675	rs6668968	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,16:33:43:0.372:2	./.	./.	0/1:14,29:32:43:0.674:2	0/1:26,23:33:49:0.469:2	0/1:24,21:34:45:0.467:2	0/1:0,38:33:38:1.00:2	0/1:19,13:33:32:0.406:2
chr1	154294464	rs201824170	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,20:32:190:0.105:2	0/1:135,12:32:147:0.082:2	0/1:41,5:32:46:0.109:2	0/1:173,16:31:189:0.085:2	./.	0/1:168,25:31:193:0.130:2	./.	0/1:178,16:34:194:0.082:2	0/1:168,24:34:192:0.125:2	0/1:157,31:32:188:0.165:2	./.
chr1	154294471	rs200279756	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,16:28:187:0.086:2	0/1:140,12:31:152:0.079:2	0/1:41,5:29:46:0.109:2	0/1:174,12:29:186:0.065:2	./.	0/1:167,27:29:194:0.139:2	./.	0/1:182,11:29:193:0.057:2	0/1:162,17:31:179:0.095:2	0/1:166,24:29:190:0.126:2	./.
chr1	154294499	rs201059654	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:166,15:31:181:0.083:2	0/1:148,10:31:158:0.063:2	./.	0/1:184,6:30:190:0.032:2	./.	0/1:183,12:30:195:0.062:2	./.	0/1:184,9:30:193:0.047:2	0/1:175,15:31:190:0.079:2	0/1:171,14:30:185:0.076:2	./.
chr1	154295592	rs6685323	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,67:31:137:0.489:2	./.	./.	0/1:88,53:31:141:0.376:2	0/1:58,55:31:113:0.487:2	0/1:77,67:32:144:0.465:2	0/1:1,135:31:136:0.993:2	0/1:62,65:31:127:0.512:2
chr1	154296076	rs1194610	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,19:30:52:0.365:2	0/1:19,24:30:43:0.558:2	0/1:8,3:33:11:0.273:2	./.	./.	0/1:46,44:31:90:0.489:2	./.	0/1:56,53:29:109:0.486:2	./.	./.	./.
chr1	154303976	rs6702754	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,36:28:83:0.434:2	./.	./.	0/1:44,39:30:83:0.470:2	0/1:45,62:29:107:0.579:2	0/1:35,37:29:72:0.514:2	0/1:0,52:29:52:1.00:2	0/1:53,51:30:104:0.490:2
chr1	154307027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2
chr1	154310048	rs1760795	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,89:32:170:0.524:2	0/1:57,55:32:112:0.491:2	0/1:10,11:32:21:0.524:2	0/1:97,98:32:195:0.503:2	0/1:1,152:31:153:0.993:2	0/1:91,80:31:171:0.468:2	0/1:80,92:32:172:0.535:2	./.	0/1:77,106:33:183:0.579:2	./.	0/1:96,95:32:191:0.497:2
chr1	154313441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.
chr1	154316434	rs2274988	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:31:41:0.463:2	./.	0/1:20,23:30:43:0.535:2	./.	0/1:26,32:31:58:0.552:2	0/1:26,20:31:46:0.435:2	0/1:20,16:31:36:0.444:2	./.
chr1	154317153	rs1194587	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,21:34:36:0.583:2	0/1:9,26:33:35:0.743:2	0/1:3,4:33:7:0.571:2	0/1:36,46:33:82:0.561:2	0/1:0,62:32:62:1.00:2	0/1:46,61:32:107:0.570:2	0/1:46,37:33:83:0.446:2	./.	0/1:50,51:34:101:0.505:2	./.	0/1:40,36:32:76:0.474:2
chr1	154318292	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2
chr1	154320942	rs2297607	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,58:30:129:0.450:2	./.	0/1:61,54:28:115:0.470:2	0/1:43,31:30:74:0.419:2	0/1:39,38:30:77:0.494:2	./.
chr1	154401679	rs2228144	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,46:31:76:0.605:2
chr1	154426970	rs2228145	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:32:38:0.974:2	0/1:0,13:33:13:1.00:2	./.	0/1:20,21:31:41:0.512:2	./.	0/1:32,17:29:49:0.347:2	0/1:29,13:32:42:0.310:2	./.	0/1:21,19:34:40:0.475:2	./.	0/1:21,15:33:36:0.417:2
chr1	154437773	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,9:14:53:0.173:2	./.	./.	./.	0/1:68,13:15:81:0.160:2	./.	./.	./.	./.	./.	./.
chr1	154474131	rs4845635	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,23:32:24:0.958:2	0/1:0,19:30:19:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,32:31:32:1.00:2	0/1:36,18:30:54:0.333:2	0/1:0,39:30:39:1.00:2	0/1:0,24:31:24:1.00:2	0/1:25,19:31:44:0.432:2
chr1	154516477	rs12750774	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	0/1:93,88:31:181:0.486:2	./.	0/1:80,74:32:154:0.481:2	0/1:108,62:32:170:0.365:2	./.	0/1:91,69:31:160:0.431:2	0/1:84,79:31:163:0.485:2
chr1	154516571	rs6678164	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,135:32:136:0.993:2	0/1:0,78:32:78:1.00:2	0/1:0,19:31:19:1.00:2	0/1:1,148:32:149:0.993:2	0/1:0,159:32:159:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,164:32:164:1.00:2	0/1:120,73:32:193:0.378:2	0/1:0,152:33:152:1.00:2	0/1:1,135:32:136:0.993:2	0/1:0,139:31:139:1.00:2
chr1	154516578	rs3811448	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,55:30:143:0.385:2	0/1:100,61:31:161:0.379:2	0/1:116,68:30:184:0.370:2	./.	./.	0/1:90,59:32:149:0.396:2	./.	./.
chr1	154523948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:34:129:0.031:2	./.	./.
chr1	154541971	rs200729328	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,11:13:94:0.117:2	./.	./.	./.
chr1	154558719	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2
chr1	154561925	rs1127309	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,11:31:27:0.407:2	0/1:5,17:31:22:0.773:2	./.	0/1:27,17:30:44:0.386:2	0/1:14,11:30:25:0.440:2	0/1:30,27:30:57:0.474:2	0/1:25,13:31:38:0.342:2	0/1:28,19:30:47:0.404:2	0/1:0,57:32:57:1.00:2	./.	0/1:27,21:31:49:0.438:2
chr1	154562348	rs138927668	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,68:30:133:0.511:2	./.	./.	./.	./.	./.
chr1	154573967	rs2229857	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,55:33:125:0.440:2	0/1:54,33:33:87:0.379:2	0/1:0,18:32:18:1.00:2	0/1:52,61:32:113:0.540:2	0/1:48,47:32:95:0.495:2	0/1:68,53:32:121:0.438:2	0/1:57,38:33:95:0.400:2	0/1:55,64:32:119:0.538:2	./.	0/1:0,111:33:111:1.00:2	0/1:71,67:33:138:0.486:2
chr1	154574347	rs368596210	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.
chr1	154574820	rs1466731	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,63:30:63:1.00:2	0/1:1,55:29:56:0.982:2	0/1:1,57:30:58:0.983:2	0/1:0,80:29:80:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,44:30:44:1.00:2	0/1:1,72:31:73:0.986:2
chr1	154575040	rs1802645	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,37:31:37:1.00:2
chr1	154575080	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	154580458	rs58655370	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,41:29:73:0.569:2	./.	./.	./.	./.	./.	0/1:28,25:29:53:0.472:2	0/1:26,28:30:54:0.519:2
chr1	154744807	rs1051614	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,49:31:49:1.00:2	0/1:5,5:33:10:0.500:2	0/1:83,85:33:168:0.506:2	0/1:89,80:32:169:0.473:2	0/1:0,163:32:163:1.00:2	0/1:89,80:33:169:0.473:2	0/1:95,82:32:177:0.463:2	0/1:1,142:33:144:0.993:2	0/1:1,111:32:112:0.991:2	0/1:47,64:32:111:0.577:2
chr1	154744852	rs1131820	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:2,42:29:44:0.955:2	0/1:3,4:31:7:0.571:2	0/1:1,145:30:146:0.993:2	0/1:94,89:30:183:0.486:2	0/1:1,132:29:133:0.992:2	0/1:93,96:30:189:0.508:2	0/1:78,59:30:137:0.431:2	0/1:2,126:31:128:0.984:2	0/1:0,95:30:95:1.00:2	0/1:0,85:29:85:1.00:2
chr1	154841889	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.
chr1	154842243	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:32:10:0.700:2	./.	./.	0/1:9,3:31:12:0.250:2	0/1:1,3:29:4:0.750:2	./.	./.	./.	0/1:2,6:34:8:0.750:2	0/1:2,4:32:6:0.667:2	./.
chr1	154842244	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:32:10:0.700:2	./.	./.	0/1:9,3:33:12:0.250:2	0/1:1,3:31:4:0.750:2	./.	./.	./.	0/1:2,6:32:8:0.750:2	0/1:2,4:32:6:0.667:2	./.
chr1	154901581	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.
chr1	154904856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2
chr1	154918244	rs41264251	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:30:47:0.489:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	154918352	rs41264253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,36:32:52:0.692:2	./.	./.	./.	./.	./.	./.	./.
chr1	154919080	rs2061690	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,3:32:16:0.188:2	0/1:1,4:30:5:0.800:2	./.	0/1:7,15:30:22:0.682:2	0/1:17,15:29:32:0.469:2	0/1:10,14:31:24:0.583:2	0/1:10,11:31:21:0.524:2	0/1:11,16:30:27:0.593:2	./.	0/1:6,12:31:18:0.667:2	0/1:0,21:31:21:1.00:2
chr1	154936713	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.	./.
chr1	154947214	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:32:153:0.033:2	./.	./.	./.	./.	./.
chr1	154947218	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:32:168:0.030:2	./.	./.	./.	./.	./.
chr1	154947226	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:31:183:0.027:2	./.	./.	./.	./.	./.
chr1	154947247	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	./.	./.	./.	./.	./.	0/1:167,5:32:173:0.029:2	./.
chr1	154960651	rs140409443	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:87,64:32:152:0.424:2	0/1:50,46:32:96:0.479:2	./.	./.	./.	./.	./.	./.	./.	0/1:101,69:32:170:0.406:2	./.
chr1	154961121	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.
chr1	154987526	rs11264295	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,11:31:34:0.324:2	0/1:7,8:31:15:0.533:2	./.	./.	0/1:37,23:32:60:0.383:2	0/1:36,11:31:47:0.234:2	./.	0/1:31,23:30:54:0.426:2	./.	0/1:19,30:29:49:0.612:2	0/1:0,25:31:25:1.00:2
chr1	154988957	rs2242195	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,47:28:47:1.00:2	0/1:0,18:29:18:1.00:2	./.	./.	0/1:31,19:26:50:0.380:2	0/1:1,31:28:32:0.969:2	0/1:1,18:27:19:0.947:2	0/1:25,9:29:34:0.265:2	0/1:12,10:26:23:0.455:2	0/1:0,28:27:28:1.00:2	0/1:0,15:23:15:1.00:2
chr1	154995920	rs72702247	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:29:45:0.533:2	./.	./.	./.	0/1:19,19:31:39:0.500:2	./.
chr1	155003075	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155006091	rs10908453	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,19:30:54:0.352:2	0/1:15,16:30:31:0.516:2	0/1:3,5:33:8:0.625:2	./.	0/1:47,44:32:92:0.484:2	0/1:55,40:33:95:0.421:2	./.	0/1:49,49:32:98:0.500:2	./.	0/1:41,45:32:86:0.523:2	0/1:0,82:31:82:1.00:2
chr1	155006999	rs6680600	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,18:31:32:0.563:2	0/1:5,6:30:11:0.545:2	./.	./.	0/1:19,12:31:31:0.387:2	0/1:18,10:30:28:0.357:2	./.	0/1:20,13:32:33:0.394:2	./.	0/1:9,7:32:16:0.438:2	0/1:18,14:30:32:0.438:2
chr1	155019710	rs11264300	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:53,48:33:101:0.475:2	0/1:37,18:31:55:0.327:2	0/1:12,12:34:24:0.500:2	./.	0/1:47,50:32:97:0.515:2	0/1:87,52:33:139:0.374:2	./.	0/1:89,74:32:163:0.454:2	./.	0/1:49,38:32:87:0.437:2	0/1:100,61:33:161:0.379:2
chr1	155019712	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr1	155026871	rs11548311	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,18:32:42:0.429:2	0/1:10,8:33:18:0.444:2	./.	./.	./.	./.	0/1:0,33:31:33:1.00:2	./.	0/1:0,28:33:28:1.00:2	./.	./.
chr1	155026942	rs6427128	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:28:33:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,53:28:53:1.00:2	0/1:24,16:27:40:0.400:2	0/1:33,22:28:55:0.400:2	0/1:0,39:27:39:1.00:2	0/1:34,30:28:64:0.469:2	0/1:0,30:29:30:1.00:2	0/1:1,37:28:38:0.974:2	0/1:21,16:27:37:0.432:2
chr1	155029456	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.
chr1	155030557	rs11264303	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,8:29:29:0.276:2	0/1:6,8:29:14:0.571:2	0/1:0,4:29:4:1.00:2	0/1:0,38:30:38:1.00:2	0/1:20,21:30:41:0.512:2	./.	0/1:3,46:30:49:0.939:2	0/1:28,11:30:39:0.282:2	0/1:0,23:30:23:1.00:2	./.	0/1:10,11:30:21:0.524:2
chr1	155033308	rs11589479	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,13:31:20:0.650:2	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	0/1:0,27:33:27:1.00:2
chr1	155033317	rs11264304	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:28:9:1.00:2	0/1:0,11:25:11:1.00:2	./.	0/1:0,17:26:17:1.00:2	0/1:12,5:25:17:0.294:2	0/1:8,8:29:16:0.500:2	0/1:0,16:27:16:1.00:2	./.	0/1:0,15:29:15:1.00:2	0/1:0,6:27:6:1.00:2	./.
chr1	155033918	rs41264285	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:29:14:0.500:2	0/1:59,56:31:115:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr1	155058663	rs17723260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:29:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155106009	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.
chr1	155106054	rs4390169	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:29:13:0.538:2	./.	0/1:79,53:28:132:0.402:2	0/1:73,43:29:117:0.371:2	0/1:96,68:29:164:0.415:2	0/1:7,151:29:158:0.956:2	./.	./.	0/1:1,127:29:128:0.992:2
chr1	155106227	rs4745	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.	0/1:59,68:31:127:0.535:2	0/1:79,63:31:142:0.444:2	0/1:59,63:31:122:0.516:2	0/1:4,177:31:181:0.978:2	./.	./.	0/1:1,144:32:145:0.993:2
chr1	155141949	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.
chr1	155145763	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr1	155149718	rs3814316	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,34:33:71:0.479:2	0/1:25,14:31:39:0.359:2	./.	0/1:49,53:33:102:0.520:2	./.	0/1:54,53:32:107:0.495:2	./.	./.	./.	0/1:1,78:33:79:0.987:2	./.
chr1	155150537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155150561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:116:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155160941	rs11465205	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,65:32:153:0.425:2	./.	./.	./.
chr1	155162017	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.
chr1	155162067	rs4072037	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,31:32:31:1.00:2	0/1:9,3:32:12:0.250:2	0/1:2,85:32:87:0.977:2	0/1:38,36:31:74:0.486:2	0/1:35,61:31:96:0.635:2	0/1:37,27:32:64:0.422:2	./.	0/1:1,94:33:95:0.989:2	0/1:2,77:32:79:0.975:2	./.
chr1	155170323	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:34:175:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155171288	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,11:18:142:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr1	155172725	rs35154152	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,35:28:74:0.473:2	0/1:20,25:28:45:0.556:2	0/1:2,5:29:7:0.714:2	0/1:32,43:28:75:0.573:2	0/1:42,43:29:85:0.506:2	./.	0/1:48,44:28:92:0.478:2	./.	0/1:0,82:29:82:1.00:2	./.	./.
chr1	155173035	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,60:30:117:0.513:2	./.	./.	./.	./.	./.
chr1	155178782	rs760077	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,5:31:5:1.00:2	0/1:2,5:28:7:0.714:2	./.	./.	./.	0/1:0,5:34:5:1.00:2	./.	./.
chr1	155181989	rs61738875	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:58,31:33:89:0.348:2	0/1:22,30:32:52:0.577:2	./.	./.	0/1:79,63:32:142:0.444:2	./.	0/1:62,67:32:129:0.519:2	./.	0/1:0,122:33:122:1.00:2	./.	./.
chr1	155183381	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:31:37:0.108:2	./.	./.	./.	./.	./.	./.
chr1	155184367	rs137953989	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,69:32:179:0.385:2
chr1	155184412	rs146090650	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,68:30:170:0.400:2	./.	./.	./.	./.	./.
chr1	155184891	rs145796415	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.	./.
chr1	155186246	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:33:196:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155186253	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,7:30:197:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155186729	rs28445596	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,93:33:95:0.979:2	0/1:0,62:33:62:1.00:2	0/1:13,10:32:23:0.435:2	0/1:1,142:33:143:0.993:2	0/1:43,53:32:96:0.552:2	0/1:51,62:33:113:0.549:2	0/1:71,52:32:123:0.423:2	./.	0/1:0,116:33:116:1.00:2	0/1:1,146:33:147:0.993:2	./.
chr1	155186742	rs1057941	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,41:31:90:0.456:2	0/1:31,27:31:58:0.466:2	./.	0/1:63,53:31:116:0.457:2	./.	0/1:44,47:30:91:0.516:2	./.	./.	./.	0/1:1,125:31:127:0.992:2	./.
chr1	155205008	rs368060	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:33:169:0.036:2
chr1	155207203	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2
chr1	155207210	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2
chr1	155217984	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.
chr1	155218011	rs150296362	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:29:42:0.537:2	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:30:46:0.565:2	./.
chr1	155220135	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.
chr1	155220551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.	./.	./.	./.
chr1	155230131	rs1142287	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:32:6:0.667:2	0/1:21,18:32:39:0.462:2	./.	0/1:17,28:31:45:0.622:2	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.
chr1	155255087	rs201786360	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:23:24:0.167:2	./.	./.	./.	./.	./.	./.
chr1	155257061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2
chr1	155257818	rs35001694	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,52:31:100:0.520:2	./.	./.	./.	0/1:24,29:30:53:0.547:2
chr1	155260383	rs1052176	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:13,16:32:29:0.552:2	./.	0/1:25,12:31:37:0.324:2	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.
chr1	155263267	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr1	155271086	rs192191038	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,62:31:149:0.416:2	./.	./.	./.
chr1	155288495	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.
chr1	155290231	rs41314549	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155291431	rs12741581	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,72:31:126:0.571:2	./.	./.	./.	0/1:51,48:32:99:0.485:2	./.
chr1	155294274	rs914616	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:33:4:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,5:26:5:1.00:2	0/1:0,4:26:4:1.00:2
chr1	155322637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155408635	rs4971053	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:29:104:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,108:29:108:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,113:30:114:1.00:2	0/1:0,166:29:166:1.00:2	0/1:0,133:30:133:1.00:2	0/1:3,90:28:93:0.968:2	0/1:0,152:28:152:1.00:2
chr1	155450301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.
chr1	155451466	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.	./.	./.
chr1	155490984	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,9:19:110:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155580061	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:28:18:0.167:2	./.	./.	./.	./.	./.
chr1	155581319	rs202139573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,83:32:198:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr1	155583937	rs147713038	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,7:31:25:0.280:2	0/1:127,66:32:193:0.342:2	./.	0/1:150,45:32:195:0.231:2	./.	./.	./.	0/1:131,57:32:188:0.303:2	./.
chr1	155629483	rs7539	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,27:33:53:0.509:2	0/1:12,26:32:38:0.684:2	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.	0/1:34,26:34:60:0.433:2	./.	./.
chr1	155629882	rs373373657	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.
chr1	155630462	rs182978	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:124:0.034:2	./.	./.	./.	./.	./.
chr1	155640133	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.
chr1	155640254	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:30:21:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155650212	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.
chr1	155658085	rs2666826	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:34:33:0.394:2	./.	0/1:0,36:32:36:1.00:2	./.	./.	./.	0/1:15,14:32:29:0.483:2	./.
chr1	155691371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:31:179:0.034:2	./.	./.	./.
chr1	155699118	rs4933	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,33:32:93:0.355:2	./.	./.	./.	./.	./.
chr1	155733105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.
chr1	155733214	rs607790	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,5:32:127:0.039:2	./.	./.	./.
chr1	155733245	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:33:95:0.053:2	./.	./.	./.
chr1	155733257	rs607834	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,5:30:85:0.059:2	./.	./.	./.
chr1	155735012	rs2297775	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:32:12:0.583:2	0/1:50,61:32:111:0.550:2	./.	0/1:57,39:32:96:0.406:2	./.	./.	./.	0/1:51,23:31:74:0.311:2	./.
chr1	155735475	rs675918	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,5:32:109:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr1	155755097	rs822021	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:33:90:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,100:33:100:1.00:2	0/1:1,91:32:92:0.989:2	0/1:0,109:32:109:1.00:2
chr1	155755109	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.
chr1	155774899	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.
chr1	155783577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.	./.
chr1	155837865	rs822522	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,60:32:60:1.00:2	0/1:1,58:32:59:0.983:2	0/1:0,73:32:73:1.00:2
chr1	155838267	rs822521	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,54:29:55:0.982:2	0/1:0,52:29:52:1.00:2	0/1:0,54:30:54:1.00:2	0/1:1,59:31:60:0.983:2	0/1:0,47:30:47:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,59:30:59:1.00:2	0/1:1,58:29:59:0.983:2
chr1	155870264	rs376391961	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.
chr1	155880573	rs493446	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,10:33:10:1.00:2	0/1:33,28:33:61:0.459:2	0/1:11,15:33:26:0.577:2	0/1:27,21:33:48:0.438:2	0/1:2,48:31:50:0.960:2	0/1:0,44:32:44:1.00:2	0/1:0,45:32:45:1.00:2	0/1:1,43:33:44:0.977:2	0/1:0,42:32:42:1.00:2
chr1	155899083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2
chr1	155899133	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.
chr1	155903588	rs149444935	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2
chr1	155904177	rs2275079	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,14:32:14:1.00:2	0/1:27,21:31:48:0.438:2	0/1:40,29:31:69:0.420:2	0/1:43,36:32:79:0.456:2	0/1:0,57:31:57:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,34:31:34:1.00:2
chr1	155912486	rs2152051	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:26:23:1.00:2	0/1:0,17:27:17:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,35:26:35:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,31:25:31:1.00:2	0/1:0,19:26:19:1.00:2	0/1:0,24:25:24:1.00:2	0/1:0,29:26:29:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,22:24:22:1.00:2
chr1	155932787	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.
chr1	156011444	rs2297792	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:0,27:32:27:1.00:2	./.	0/1:0,60:31:60:1.00:2	./.	./.	0/1:3,46:31:49:0.939:2	0/1:2,84:31:86:0.977:2	0/1:0,50:32:50:1.00:2	0/1:24,22:32:46:0.478:2	0/1:16,19:33:35:0.543:2
chr1	156011756	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:31:115:0.043:2	0/1:98,4:31:102:0.039:2	./.	./.	./.
chr1	156020157	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:31:188:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:28:190:0.032:2
chr1	156020163	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:28:192:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:32:190:0.026:2
chr1	156020184	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156020264	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	0/1:153,4:33:157:0.025:2
chr1	156020310	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:63,4:32:67:0.060:2	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.	./.	0/1:124,8:32:132:0.061:2
chr1	156020944	rs145443991	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.
chr1	156025096	rs7541	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:26,22:31:48:0.458:2	0/1:23,21:31:44:0.477:2	./.	0/1:21,14:29:35:0.400:2	./.	./.	./.	./.
chr1	156035753	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.	./.
chr1	156084760	rs11549668	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:29:34:0.529:2	./.	./.	./.	./.
chr1	156107534	rs4641	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:0,50:29:50:1.00:2	./.	./.	0/1:0,44:29:44:1.00:2	0/1:14,13:31:27:0.481:2	./.	0/1:12,12:28:24:0.500:2
chr1	156108460	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.
chr1	156108483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.
chr1	156142719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.
chr1	156146218	rs12401573	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,24:32:24:1.00:2	0/1:3,3:32:6:0.500:2	0/1:0,50:32:50:1.00:2	./.	0/1:23,35:31:58:0.603:2	0/1:0,45:32:45:1.00:2	0/1:26,25:31:51:0.490:2	0/1:27,27:33:54:0.500:2	0/1:14,21:31:35:0.600:2	./.
chr1	156146689	rs41265019	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,60:31:113:0.531:2	./.	./.	./.	./.	./.	./.
chr1	156195386	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.
chr1	156202173	rs1052053	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,53:31:102:0.520:2	0/1:42,22:29:64:0.344:2	0/1:8,7:31:15:0.467:2	0/1:90,75:31:165:0.455:2	0/1:79,79:30:158:0.500:2	./.	0/1:94,81:30:175:0.463:2	0/1:91,68:29:159:0.428:2	0/1:83,53:30:137:0.390:2	0/1:77,48:30:125:0.384:2	./.
chr1	156206121	rs1052067	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,58:31:136:0.426:2	0/1:31,21:31:52:0.404:2	0/1:10,5:30:15:0.333:2	0/1:90,61:31:151:0.404:2	0/1:97,95:30:192:0.495:2	./.	0/1:98,93:30:191:0.487:2	./.	0/1:88,50:32:138:0.362:2	./.	./.
chr1	156206181	rs11540816	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:33:16:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156213921	rs7513351	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,23:28:64:0.359:2	./.	./.	./.	0/1:35,25:29:60:0.417:2	./.	./.
chr1	156215899	rs2075165	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:30:18:0.389:2	0/1:6,6:32:12:0.500:2	./.	./.	0/1:9,9:31:18:0.500:2	0/1:8,10:31:18:0.556:2	0/1:0,25:31:25:1.00:2	0/1:0,24:31:24:1.00:2	0/1:7,5:31:12:0.417:2	0/1:2,7:32:9:0.778:2	./.
chr1	156216511	rs11552751	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:29:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr1	156233189	rs2273833	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:49,41:31:90:0.456:2	0/1:29,27:31:56:0.482:2	0/1:8,8:32:16:0.500:2	./.	./.	0/1:105,73:30:178:0.410:2	0/1:4,190:31:194:0.979:2	0/1:87,104:32:191:0.545:2	./.	0/1:60,58:31:118:0.492:2	./.
chr1	156244446	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.
chr1	156255456	rs6684514	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:30:40:0.400:2	0/1:17,10:32:27:0.370:2	./.	./.	./.	0/1:35,26:30:61:0.426:2	0/1:4,75:30:79:0.949:2	0/1:43,36:30:79:0.456:2	./.	0/1:34,17:31:51:0.333:2	./.
chr1	156263940	rs10908495	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,25:31:45:0.556:2	0/1:21,10:32:31:0.323:2	0/1:4,6:31:10:0.600:2	./.	./.	0/1:25,37:31:62:0.597:2	0/1:2,105:32:107:0.981:2	0/1:42,34:31:76:0.447:2	./.	0/1:33,39:32:72:0.542:2	./.
chr1	156264000	rs10908496	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,40:31:62:0.645:2	0/1:24,16:31:40:0.400:2	0/1:6,8:31:14:0.571:2	./.	./.	0/1:36,42:30:78:0.538:2	0/1:2,93:31:95:0.979:2	0/1:48,43:31:91:0.473:2	./.	0/1:27,33:31:60:0.550:2	./.
chr1	156264283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156264648	rs1570805	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:30:44:0.545:2	./.	./.	./.	./.	0/1:0,61:32:61:1.00:2
chr1	156269389	rs12128785	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:33:16:0.438:2	0/1:0,13:31:13:1.00:2	0/1:13,9:32:22:0.409:2	./.	0/1:2,5:33:7:0.714:2	./.
chr1	156290656	rs11548200	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,47:29:136:0.346:2	./.	./.	./.
chr1	156314440	rs41265041	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:28:12:0.583:2	./.	./.	./.	./.	./.	./.
chr1	156347131	rs2245623	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,78:31:178:0.438:2	0/1:50,59:31:109:0.541:2	0/1:0,27:31:27:1.00:2	0/1:1,184:30:185:0.995:2	0/1:103,84:31:187:0.449:2	./.	0/1:108,86:31:194:0.443:2	0/1:112,78:31:190:0.411:2	0/1:96,80:32:176:0.455:2	./.	./.
chr1	156347147	rs150963900	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,72:34:180:0.400:2	./.	./.	./.	./.
chr1	156347834	rs11586833	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,146:30:148:0.986:2	0/1:121,68:30:189:0.360:2	./.	0/1:61,65:31:128:0.516:2	./.	0/1:0,89:29:90:1.00:2
chr1	156348006	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:29:15:0.200:2	./.	./.	./.	./.	./.	./.	./.
chr1	156348032	rs181064189	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,11:28:21:0.524:2	./.	./.	./.	./.	./.	./.
chr1	156351699	rs3748569	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,44:31:107:0.411:2	0/1:35,29:32:64:0.453:2	./.	./.	./.	0/1:2,108:31:110:0.982:2	0/1:67,53:31:120:0.442:2	./.	0/1:73,51:32:124:0.411:2	0/1:37,61:32:98:0.622:2	0/1:0,138:32:138:1.00:2
chr1	156354367	rs6668857	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:29:66:0.515:2	0/1:19,16:30:35:0.457:2	./.	./.	./.	0/1:1,75:30:76:0.987:2	0/1:52,41:28:93:0.441:2	0/1:47,46:28:93:0.495:2	0/1:42,64:29:106:0.604:2	0/1:0,53:29:53:1.00:2	0/1:0,66:29:66:1.00:2
chr1	156446903	rs2274317	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,80:28:81:0.988:2	0/1:0,57:29:57:1.00:2	0/1:0,5:29:5:1.00:2	0/1:1,109:29:110:0.991:2	0/1:92,58:27:154:0.387:2	0/1:0,100:29:100:1.00:2	0/1:2,125:28:127:0.984:2	0/1:1,131:28:132:0.992:2	0/1:77,36:30:118:0.319:2	0/1:46,67:29:115:0.593:2	0/1:48,53:28:104:0.525:2
chr1	156450719	rs1185700	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,66:31:117:0.564:2	./.	./.	./.	./.	0/1:20,38:31:58:0.655:2	./.
chr1	156450740	rs1925950	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:31:58:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,124:31:124:1.00:2	0/1:76,60:31:136:0.441:2	0/1:1,147:30:148:0.993:2	0/1:3,113:31:116:0.974:2	0/1:1,114:31:115:0.991:2	0/1:56,45:32:102:0.446:2	0/1:47,18:31:65:0.277:2	0/1:47,51:31:99:0.520:2
chr1	156453096	rs28730744	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,66:31:133:0.496:2	./.	./.	./.	./.	./.	./.	./.
chr1	156497772	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:34:147:0.027:2	./.
chr1	156499969	rs1171566	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,27:30:63:0.429:2	0/1:30,18:31:48:0.375:2	./.	0/1:48,40:33:88:0.455:2	./.	./.	./.	0/1:67,41:32:108:0.380:2	0/1:55,37:33:92:0.402:2	0/1:40,25:32:65:0.385:2	./.
chr1	156499977	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.
chr1	156500096	rs115742679	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,33:34:97:0.340:2	./.	./.
chr1	156500974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.	./.
chr1	156502870	rs4661044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,76:34:166:0.458:2	./.	./.
chr1	156513841	rs201347788	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,8:15:52:0.154:2	./.	./.	0/1:46,14:16:60:0.233:2	0/1:64,12:13:76:0.158:2	0/1:60,10:17:70:0.143:2	0/1:67,16:14:84:0.193:2	0/1:65,17:14:82:0.207:2	0/1:82,9:17:91:0.099:2	0/1:62,9:19:71:0.127:2	0/1:60,17:22:77:0.221:2
chr1	156517999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.
chr1	156518379	rs744224	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,49:30:108:0.454:2	./.	./.	./.	0/1:77,44:30:121:0.364:2	./.	0/1:43,28:31:71:0.394:2	./.
chr1	156518408	rs369748008	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.
chr1	156526387	rs11264498	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,28:32:61:0.459:2	0/1:23,18:30:41:0.439:2	0/1:7,9:31:16:0.563:2	0/1:46,43:31:89:0.483:2	0/1:0,119:31:119:1.00:2	0/1:1,103:32:104:0.990:2	0/1:0,141:32:141:1.00:2	0/1:42,42:31:84:0.500:2	0/1:37,51:32:88:0.580:2	0/1:32,31:33:63:0.492:2	0/1:39,44:32:83:0.530:2
chr1	156526430	rs35160849	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:29:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,35:29:71:0.493:2
chr1	156526444	rs2488269	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,87:32:87:1.00:2
chr1	156532977	rs1171547	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,72:33:72:1.00:2	0/1:1,119:32:120:0.992:2	0/1:0,110:34:110:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,99:32:99:1.00:2
chr1	156536221	rs2066377	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:29:171:1.00:2	0/1:0,108:29:108:1.00:2	0/1:0,40:29:40:1.00:2	0/1:1,173:29:174:0.994:2	0/1:0,187:30:188:1.00:2	./.	0/1:0,159:30:159:1.00:2	0/1:2,169:30:171:0.988:2	0/1:0,178:31:178:1.00:2	0/1:1,185:30:186:0.995:2	0/1:0,180:29:180:1.00:2
chr1	156536251	rs947662	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,173:33:174:0.994:2	0/1:0,106:32:106:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,174:32:175:0.994:2	0/1:0,175:32:176:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,190:32:190:1.00:2	0/1:4,183:32:187:0.979:2	0/1:0,172:33:172:1.00:2	0/1:0,176:33:177:1.00:2	0/1:2,168:32:170:0.988:2
chr1	156551848	rs6682716	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,31:32:31:1.00:2	0/1:7,6:34:13:0.462:2	0/1:22,30:33:52:0.577:2	0/1:0,53:32:53:1.00:2	0/1:0,35:33:35:1.00:2	0/1:1,50:33:51:0.980:2	0/1:1,57:33:59:0.983:2	0/1:24,31:34:55:0.564:2	0/1:21,23:33:44:0.523:2	0/1:0,41:32:41:1.00:2
chr1	156553620	rs200375567	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,21:13:168:0.126:2	0/1:128,20:10:149:0.135:2	0/1:134,21:15:155:0.135:2	0/1:139,24:13:163:0.147:2	0/1:140,22:13:162:0.136:2	0/1:120,20:12:141:0.143:2	0/1:99,20:18:119:0.168:2	0/1:93,14:14:107:0.131:2
chr1	156556321	rs10796961	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,56:30:56:1.00:2	./.	0/1:0,63:30:63:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,108:31:108:1.00:2	0/1:38,22:33:60:0.367:2	0/1:0,73:32:73:1.00:2	0/1:0,63:32:63:1.00:2
chr1	156561651	rs7516274	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,6:31:6:1.00:2
chr1	156563375	rs6427321	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,71:31:71:1.00:2	0/1:27,43:32:70:0.614:2	0/1:0,54:32:54:1.00:2	0/1:0,58:32:58:1.00:2
chr1	156563726	rs6427322	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,46:33:46:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,48:32:48:1.00:2	0/1:26,20:34:46:0.435:2	0/1:3,30:33:33:0.909:2	0/1:0,46:33:46:1.00:2
chr1	156563813	rs6668178	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,57:31:57:1.00:2	0/1:44,20:29:64:0.313:2	0/1:0,32:31:32:1.00:2	0/1:0,57:31:57:1.00:2
chr1	156563852	rs942963	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,42:32:42:1.00:2	0/1:46,18:32:64:0.281:2	0/1:0,25:32:25:1.00:2	0/1:0,40:32:40:1.00:2
chr1	156565170	rs34823415	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,82:30:164:0.500:2	./.	./.
chr1	156565218	rs35613498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,78:33:145:0.538:2	./.	./.
chr1	156568252	rs11264505	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,74:33:174:0.425:2	./.	./.
chr1	156568285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr1	156571243	rs16837546	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:34:62:0.387:2	./.	./.
chr1	156621286	rs147928348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,15:31:49:0.306:2	./.	./.	./.	./.
chr1	156622252	rs1056695	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:31:22:0.455:2	0/1:16,5:32:21:0.238:2	./.	./.	./.	0/1:15,19:31:34:0.559:2	0/1:16,12:29:28:0.429:2	0/1:25,13:32:38:0.342:2	0/1:0,39:31:39:1.00:2	0/1:22,16:31:38:0.421:2	./.
chr1	156628861	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,6:28:28:0.214:2
chr1	156639636	rs11549292	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:1,27:31:28:0.964:2	./.	./.	./.	0/1:9,15:32:24:0.625:2	./.	0/1:16,11:32:27:0.407:2
chr1	156639753	rs11582300	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:12:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,81:31:81:1.00:2	0/1:2,130:31:132:0.985:2	0/1:59,40:31:99:0.404:2	0/1:63,79:31:142:0.556:2	0/1:35,39:32:74:0.527:2	./.	0/1:49,40:32:89:0.449:2
chr1	156640156	rs3748570	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,29:32:29:1.00:2	0/1:8,18:32:26:0.692:2	0/1:18,6:28:24:0.250:2	0/1:15,9:32:24:0.375:2	./.	0/1:16,16:32:33:0.500:2
chr1	156640285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.
chr1	156640308	rs3748571	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:42,43:31:85:0.506:2	./.	./.	./.	0/1:40,31:31:71:0.437:2	./.	0/1:33,32:32:65:0.492:2
chr1	156640503	rs3828043	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:26,11:30:37:0.297:2	./.	./.	./.	0/1:24,20:32:44:0.455:2	./.	0/1:25,29:31:54:0.537:2
chr1	156640678	rs2886443	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,23:32:23:1.00:2	0/1:1,25:32:26:0.962:2	0/1:9,12:32:21:0.571:2	0/1:15,10:31:25:0.400:2	0/1:12,17:32:29:0.586:2	./.	0/1:14,19:29:33:0.576:2
chr1	156641537	rs951781	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,95:32:97:0.979:2	0/1:0,57:32:57:1.00:2	./.	./.	./.	./.	0/1:47,12:32:59:0.203:2	0/1:60,51:32:112:0.459:2	0/1:58,49:32:107:0.458:2	0/1:0,69:32:69:1.00:2	0/1:101,47:32:148:0.318:2
chr1	156698926	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156705593	rs4311877	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,64:32:64:1.00:2
chr1	156713512	rs4437869	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,39:31:39:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,32:32:32:1.00:2
chr1	156713558	rs4399146	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,22:31:23:0.957:2	0/1:0,22:31:22:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:6,12:31:18:0.667:2	0/1:13,16:31:29:0.552:2	./.	0/1:1,34:31:35:0.971:2	./.	./.	0/1:19,18:32:37:0.486:2
chr1	156715134	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.
chr1	156737969	rs11264542	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:29:16:1.00:2	0/1:4,4:30:8:0.500:2	./.	./.	./.	0/1:3,8:27:11:0.727:2	./.	./.
chr1	156752048	rs2274503	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,145:31:147:0.993:2	0/1:0,79:31:79:1.00:2	0/1:2,124:32:126:0.984:2	0/1:0,103:31:103:1.00:2	./.	0/1:0,180:33:181:1.00:2	0/1:0,138:32:138:1.00:2	0/1:110,86:31:197:0.439:2
chr1	156760887	rs11264554	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,44:32:73:0.603:2	0/1:0,92:32:92:1.00:2	0/1:45,32:32:77:0.416:2	./.	0/1:42,77:33:119:0.647:2	0/1:0,60:31:60:1.00:2	0/1:53,67:32:120:0.558:2
chr1	156779183	rs12072861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr1	156784982	rs926103	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,130:32:130:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,108:32:108:1.00:2	0/1:95,49:33:145:0.340:2	./.	0/1:0,145:33:145:1.00:2	0/1:1,119:33:120:0.992:2	0/1:71,47:32:119:0.398:2
chr1	156785617	rs1800601	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,15:32:40:0.375:2	0/1:2,182:32:184:0.989:2	0/1:0,192:32:192:1.00:2	0/1:1,186:32:187:0.995:2	0/1:1,182:32:183:0.995:2	0/1:192,4:32:196:0.020:2	0/1:0,187:33:187:1.00:2	0/1:0,185:32:185:1.00:2	0/1:90,88:32:178:0.494:2
chr1	156814027	rs56252149	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:20,18:32:38:0.474:2	0/1:19,21:32:40:0.525:2	./.	./.	./.	0/1:20,8:32:28:0.286:2	0/1:17,13:33:30:0.433:2	./.
chr1	156814363	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	156816363	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,6:31:121:0.050:2	./.	./.
chr1	156821742	rs55881234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:30:54:0.556:2
chr1	156836751	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:28:69:0.058:2
chr1	156845399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.
chr1	156845892	rs200575096	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,67:33:130:0.515:2	./.
chr1	156846233	rs6334	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	0/1:94,94:31:188:0.500:2	./.	./.	0/1:89,86:31:175:0.491:2	./.	0/1:2,71:30:73:0.973:2	./.
chr1	156848918	rs6336	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,38:31:100:0.380:2	./.	./.	./.	./.	./.	./.
chr1	156848946	rs6339	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:66,37:31:103:0.359:2	./.	./.	./.	./.	./.	./.
chr1	156848995	rs6337	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,25:33:55:0.455:2	0/1:19,17:32:36:0.472:2	0/1:0,6:32:6:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,65:30:65:1.00:2	0/1:38,32:31:70:0.457:2	0/1:4,36:31:40:0.900:2	0/1:51,32:32:83:0.386:2	0/1:1,67:32:68:0.985:2	./.	0/1:1,51:31:52:0.981:2
chr1	156873727	rs12407843	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:28:33:0.394:2	./.	0/1:28,26:30:54:0.481:2	./.	./.	./.
chr1	156877457	rs1952294	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:32:146:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,149:33:149:1.00:2
chr1	156877771	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.	./.
chr1	156877797	rs77235035	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:31:15:0.333:2	./.	./.	0/1:74,55:32:129:0.426:2	./.	0/1:90,80:32:170:0.471:2	./.	./.	./.
chr1	156878531	rs11264580	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2	./.	./.	./.
chr1	156878737	rs6671392	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:30:72:0.500:2	./.	0/1:74,57:30:131:0.435:2	./.	./.	./.
chr1	156879580	rs3737224	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	0/1:34,42:32:76:0.553:2	./.	0/1:69,35:31:104:0.337:2	./.	./.	./.
chr1	156882996	rs822441	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	0/1:60,46:32:106:0.434:2	0/1:0,63:33:63:1.00:2	./.	0/1:48,52:32:100:0.520:2	./.	./.	./.
chr1	156883215	rs822442	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:27:10:0.400:2	./.	./.	0/1:30,41:29:71:0.577:2	./.	0/1:37,29:30:66:0.439:2	./.	./.	./.
chr1	156883242	rs55864969	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,24:31:40:0.600:2
chr1	156883493	rs11264581	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,24:31:39:0.615:2	0/1:17,15:32:32:0.469:2	./.	0/1:22,21:31:43:0.488:2	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2	./.	0/1:20,20:32:40:0.500:2
chr1	156883546	rs12137505	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,27:29:64:0.422:2	0/1:19,19:29:38:0.500:2	0/1:6,9:31:15:0.600:2	0/1:1,105:30:106:0.991:2	./.	./.	0/1:57,42:29:99:0.424:2	./.	0/1:55,36:31:91:0.396:2	./.	0/1:38,26:28:64:0.406:2
chr1	156884584	rs56260937	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:31:37:0.528:2	0/1:20,15:32:35:0.429:2	./.	./.	./.	0/1:53,40:31:93:0.430:2	0/1:80,52:31:132:0.394:2	0/1:50,53:31:103:0.515:2	./.	./.	./.
chr1	156890619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.	./.	./.	./.	./.	./.	./.
chr1	156890672	rs41273221	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	0/1:17,12:29:29:0.414:2	./.	./.	./.
chr1	156894256	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.
chr1	156894486	rs145905660	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156902222	rs12119908	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:43,26:32:69:0.377:2	0/1:12,16:31:28:0.571:2	0/1:5,8:32:13:0.615:2	./.	./.	0/1:68,62:31:130:0.477:2	0/1:79,64:31:143:0.448:2	0/1:99,66:31:165:0.400:2	./.	./.	./.
chr1	156902259	rs822430	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,104:32:106:0.981:2	0/1:0,43:32:43:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,125:32:125:1.00:2	0/1:103,86:32:190:0.455:2	0/1:0,179:32:179:1.00:2	0/1:92,98:32:190:0.516:2	0/1:118,74:32:192:0.385:2	0/1:90,78:33:168:0.464:2	./.	0/1:72,57:32:129:0.442:2
chr1	156902281	rs822431	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:66,46:29:112:0.411:2	0/1:26,20:30:46:0.435:2	0/1:7,12:31:19:0.632:2	./.	./.	0/1:92,94:30:186:0.505:2	0/1:94,96:29:190:0.505:2	0/1:114,67:30:181:0.370:2	./.	./.	./.
chr1	156902701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2
chr1	156907081	rs945508	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,189:30:191:0.995:2	0/1:4,129:29:133:0.970:2	0/1:0,33:30:33:1.00:2	0/1:0,176:30:176:1.00:2	0/1:101,95:29:196:0.485:2	0/1:2,181:30:183:0.989:2	0/1:125,71:30:196:0.362:2	0/1:95,93:30:188:0.495:2	0/1:0,177:29:177:1.00:2	./.	0/1:112,78:29:190:0.411:2
chr1	156907115	rs868188	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,87:32:186:0.468:2	0/1:57,75:32:133:0.568:2	0/1:15,19:33:34:0.559:2	0/1:4,162:31:166:0.976:2	0/1:110,84:32:194:0.433:2	0/1:98,75:32:173:0.434:2	./.	./.	0/1:1,190:32:191:0.995:2	./.	0/1:102,79:33:181:0.436:2
chr1	156909695	rs2275199	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	0/1:3,3:29:6:0.500:2	0/1:5,7:29:12:0.583:2	0/1:9,4:33:13:0.308:2	./.	./.	./.
chr1	156910041	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,4:30:120:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	156918137	rs12138039	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,58:31:130:0.446:2	./.	0/1:56,57:31:114:0.504:2
chr1	156928840	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,61:30:136:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr1	156939067	rs2275206	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,8:32:26:0.308:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	0/1:16,13:29:29:0.448:2	0/1:32,22:29:54:0.407:2	0/1:31,36:30:67:0.537:2	./.	./.	./.
chr1	157062696	rs1176537	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:31:21:0.524:2	0/1:19,17:29:36:0.472:2	./.	0/1:1,26:30:27:0.963:2	0/1:6,22:31:28:0.786:2
chr1	157062739	rs12136960	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,9:31:28:0.333:2	./.	0/1:8,9:29:17:0.529:2	./.	./.	./.	./.
chr1	157069134	rs61730132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:30:81:0.457:2	./.	./.	./.	./.	./.
chr1	157069154	rs16838075	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:30:47:0.447:2	./.	./.	./.	./.
chr1	157095315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.	./.	./.
chr1	157095470	rs2231856	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,56:31:109:0.514:2	./.
chr1	157485504	rs115493285	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,14:33:33:0.424:2	0/1:15,11:33:26:0.423:2	./.	./.	0/1:22,13:32:35:0.371:2	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	./.
chr1	157489516	rs1332714	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:31:18:0.333:2	0/1:95,94:33:189:0.497:2	./.	./.	./.	0/1:100,90:32:190:0.474:2	0/1:0,185:33:185:1.00:2	./.	./.
chr1	157497597	rs73011545	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,34:31:53:0.642:2	./.	./.	./.	./.	./.
chr1	157504466	rs141517034	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,56:33:98:0.571:2	./.	./.
chr1	157508882	rs6427384	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,36:32:36:1.00:2	0/1:2,35:31:37:0.946:2	0/1:32,31:30:63:0.492:2	0/1:1,23:31:24:0.958:2	0/1:1,55:31:56:0.982:2	0/1:0,40:32:40:1.00:2	0/1:0,37:31:38:1.00:2	0/1:24,15:33:39:0.385:2
chr1	157509005	rs62640945	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,34:32:63:0.540:2	./.	./.	./.	./.	./.	./.	./.
chr1	157509025	rs2012199	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:30:7:1.00:2	0/1:2,67:31:69:0.971:2	0/1:0,69:31:69:1.00:2	0/1:41,49:31:90:0.544:2	0/1:0,80:32:80:1.00:2	0/1:1,69:31:70:0.986:2	0/1:0,83:31:83:1.00:2	0/1:0,45:31:45:1.00:2	0/1:33,32:32:65:0.492:2
chr1	157514091	rs12036228	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,39:32:91:0.429:2	0/1:22,10:31:32:0.313:2	./.	0/1:54,39:31:93:0.419:2	0/1:0,88:31:88:1.00:2	0/1:52,70:31:122:0.574:2	0/1:168,4:33:172:0.023:2	./.	./.	./.	./.
chr1	157514097	rs6679793	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,12:33:12:1.00:2	0/1:54,42:33:96:0.438:2	0/1:0,89:32:89:1.00:2	0/1:1,126:32:127:0.992:2	0/1:0,164:33:164:1.00:2	0/1:83,56:33:139:0.403:2	0/1:1,123:34:124:0.992:2	0/1:0,109:33:109:1.00:2	0/1:53,61:33:114:0.535:2
chr1	157519311	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,6:30:129:0.047:2	./.	./.	./.	./.	./.	./.
chr1	157519320	rs201192568	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,6:32:133:0.045:2	./.	./.	./.	./.	./.	./.
chr1	157548597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr1	157557701	rs2777962	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,36:31:87:0.414:2	0/1:39,21:32:60:0.350:2	./.	0/1:57,40:32:97:0.412:2	./.	0/1:44,50:31:94:0.532:2	0/1:1,53:32:54:0.981:2	0/1:1,72:31:73:0.986:2	./.	0/1:0,60:32:60:1.00:2	0/1:61,50:33:111:0.450:2
chr1	157559122	rs11582663	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:109,83:33:192:0.432:2	0/1:111,67:32:178:0.376:2	./.	./.	./.	./.	./.	0/1:91,95:33:186:0.511:2	./.	0/1:123,69:33:192:0.359:2	0/1:119,75:33:194:0.387:2
chr1	157567751	rs1361889	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,151:31:152:0.993:2	0/1:0,102:32:102:1.00:2	0/1:9,8:33:17:0.471:2	0/1:0,168:32:168:1.00:2	0/1:0,155:31:155:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,184:31:184:1.00:2	./.	0/1:0,165:32:165:1.00:2	0/1:0,165:31:165:1.00:2
chr1	157650803	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:27:15:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	157665225	rs200922617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,49:32:95:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr1	157667162	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:31:65:0.092:2	./.	./.	./.	./.
chr1	157667166	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:30:69:0.087:2	./.	./.	./.	./.
chr1	157667198	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:33:65:0.092:2	./.	./.	./.	./.
chr1	157668390	rs7522061	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,59:28:139:0.424:2	0/1:46,53:28:99:0.535:2	0/1:16,5:27:21:0.238:2	0/1:68,49:29:117:0.419:2	0/1:88,59:28:147:0.401:2	0/1:1,132:29:133:0.992:2	./.	0/1:152,6:27:158:0.038:2	0/1:69,72:30:141:0.511:2	./.	0/1:89,56:28:145:0.386:2
chr1	157670290	rs945635	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,39:30:85:0.459:2	0/1:18,19:29:37:0.514:2	./.	0/1:49,40:30:89:0.449:2	0/1:51,30:29:81:0.370:2	0/1:0,91:30:91:1.00:2	./.	./.	0/1:39,42:31:81:0.519:2	./.	0/1:54,43:30:97:0.443:2
chr1	157718325	rs3818813	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,50:28:107:0.467:2	0/1:18,27:28:45:0.600:2	./.	./.	0/1:72,87:28:159:0.547:2	0/1:0,146:28:146:1.00:2	./.	./.	./.	./.	0/1:61,50:29:111:0.450:2
chr1	157718696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.
chr1	157768000	rs3811024	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:28:16:0.313:2	0/1:94,58:29:152:0.382:2	./.	./.	./.	./.	./.	./.	./.
chr1	157771880	rs4971154	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,39:31:94:0.415:2	0/1:35,20:32:55:0.364:2	./.	./.	./.	0/1:51,36:31:87:0.414:2	0/1:3,81:31:84:0.964:2	0/1:2,90:31:92:0.978:2	0/1:1,100:32:101:0.990:2	0/1:1,77:32:78:0.987:2	0/1:54,51:31:105:0.486:2
chr1	157771966	rs145252437	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:32:72:0.403:2	./.	./.	./.
chr1	157804362	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:29:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr1	158045965	rs191487619	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:32:97:0.402:2	./.	./.	./.
chr1	158057633	rs36008419	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:29:10:0.500:2	0/1:53,39:31:92:0.424:2	./.	./.	0/1:3,83:30:86:0.965:2	./.	./.	./.	0/1:40,32:30:72:0.444:2
chr1	158224904	rs2269714	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:32:91:0.396:2
chr1	158225019	rs2269715	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,69:32:143:0.483:2
chr1	158263284	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,13:32:19:0.684:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158324425	rs1065457	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:30:79:0.430:2	./.	0/1:50,47:30:97:0.485:2	0/1:75,44:30:119:0.370:2	0/1:36,35:31:71:0.493:2	0/1:59,44:30:104:0.427:2
chr1	158325624	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2
chr1	158325640	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:31:175:0.029:2	./.	./.	0/1:115,4:30:119:0.034:2
chr1	158325657	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:111,5:28:116:0.043:2	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	./.	./.	0/1:136,4:32:140:0.029:2
chr1	158368541	rs34465440	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,73:32:145:0.507:2	0/1:69,76:32:145:0.524:2	0/1:90,60:33:150:0.400:2	0/1:74,60:32:134:0.448:2	0/1:79,61:32:140:0.436:2
chr1	158368846	rs6662382	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,44:33:88:0.500:2	0/1:49,55:33:104:0.529:2	0/1:53,37:32:90:0.411:2	0/1:68,45:32:113:0.398:2	0/1:75,41:33:116:0.353:2
chr1	158368964	rs61818749	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,47:31:112:0.420:2	./.	0/1:63,45:31:108:0.417:2	./.	0/1:38,33:30:71:0.465:2
chr1	158368974	rs61818750	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,45:33:108:0.417:2	./.	0/1:65,49:33:114:0.430:2	./.	0/1:37,31:33:68:0.456:2
chr1	158369064	rs41488350	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,19:32:58:0.328:2	./.	0/1:28,33:33:61:0.541:2	./.	0/1:20,21:33:41:0.512:2
chr1	158390224	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158390252	rs12239443	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:82,92:33:174:0.529:2	0/1:46,63:33:109:0.578:2	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	0/1:3,180:33:183:0.984:2	0/1:102,91:33:193:0.472:2	0/1:79,90:32:169:0.533:2	0/1:75,111:33:186:0.597:2
chr1	158390431	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158390501	rs34616883	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:93,86:30:179:0.480:2	0/1:66,39:31:105:0.371:2	./.	./.	./.	./.	./.	0/1:2,156:30:158:0.987:2	0/1:96,81:31:177:0.458:2	0/1:84,95:31:179:0.531:2	0/1:81,90:31:171:0.526:2
chr1	158435928	rs41273489	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,97:33:188:0.516:2	./.	0/1:93,95:33:188:0.505:2	./.
chr1	158436267	rs371161558	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.
chr1	158450192	rs61741711	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,72:31:159:0.453:2	./.	0/1:91,50:31:141:0.355:2	./.
chr1	158450238	rs3820678	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,81:32:158:0.516:2	./.	./.	./.
chr1	158450314	rs6679056	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:99,83:33:182:0.456:2	0/1:90,68:32:158:0.430:2	./.	./.	0/1:183,4:34:187:0.021:2	0/1:106,75:32:181:0.414:2	0/1:77,109:33:186:0.586:2	0/1:3,181:33:184:0.984:2	0/1:106,85:34:191:0.445:2	0/1:82,97:32:179:0.542:2	0/1:92,91:32:183:0.497:2
chr1	158450382	rs1418843	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,67:32:157:0.427:2	0/1:49,37:32:86:0.430:2	./.	./.	./.	0/1:82,68:31:150:0.453:2	0/1:59,59:31:118:0.500:2	0/1:78,61:31:139:0.439:2	0/1:76,66:32:142:0.465:2	./.	0/1:90,71:31:161:0.441:2
chr1	158517142	rs41273491	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,38:31:95:0.400:2	0/1:28,26:31:54:0.481:2	./.	./.	./.	0/1:61,50:31:111:0.450:2	0/1:59,61:32:120:0.508:2	./.	0/1:79,55:32:134:0.410:2	./.	0/1:55,62:32:118:0.530:2
chr1	158517353	rs16840314	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,54:32:106:0.509:2	0/1:24,24:32:48:0.500:2	./.	./.	./.	0/1:90,71:30:161:0.441:2	0/1:66,51:32:117:0.436:2	./.	0/1:66,59:32:125:0.472:2	./.	0/1:56,59:32:115:0.513:2
chr1	158532614	rs41273499	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:83,63:31:146:0.432:2	0/1:2,114:31:116:0.983:2	./.	./.	./.	./.	./.	./.
chr1	158533140	rs12080815	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,28:32:48:0.583:2	0/1:10,13:33:23:0.565:2	./.	./.	./.	0/1:32,25:31:57:0.439:2	0/1:33,42:32:75:0.560:2	0/1:38,28:32:66:0.424:2	0/1:22,25:32:47:0.532:2	./.	0/1:27,22:32:49:0.449:2
chr1	158533224	rs12081915	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,28:31:52:0.538:2	0/1:18,15:31:33:0.455:2	./.	./.	./.	0/1:39,32:32:71:0.451:2	0/1:38,39:31:77:0.506:2	0/1:52,28:31:81:0.350:2	0/1:36,29:33:65:0.446:2	./.	0/1:37,28:30:65:0.431:2
chr1	158549264	rs863360	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,86:32:198:0.434:2	0/1:59,50:32:109:0.459:2	./.	./.	./.	0/1:109,86:31:195:0.441:2	0/1:119,79:31:198:0.399:2	0/1:118,75:31:193:0.389:2	0/1:102,95:32:197:0.482:2	./.	0/1:101,95:32:196:0.485:2
chr1	158549420	rs863361	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,46:31:106:0.434:2	0/1:34,26:31:61:0.433:2	./.	./.	./.	0/1:85,69:31:154:0.448:2	0/1:97,75:32:172:0.436:2	0/1:76,64:32:140:0.457:2	0/1:87,71:32:158:0.449:2	./.	0/1:70,57:31:128:0.449:2
chr1	158549421	rs77690058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,67:32:134:0.500:2	./.	0/1:59,45:32:104:0.433:2	./.
chr1	158549492	rs863362	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,36:32:90:0.400:2	0/1:27,25:32:52:0.481:2	./.	./.	./.	0/1:63,49:32:112:0.438:2	0/1:55,38:32:93:0.409:2	0/1:53,34:31:87:0.391:2	0/1:49,56:33:105:0.533:2	./.	0/1:50,40:32:90:0.444:2
chr1	158549511	rs863363	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,27:32:74:0.365:2	0/1:25,24:32:49:0.490:2	./.	./.	./.	0/1:50,43:31:93:0.462:2	0/1:42,30:31:72:0.417:2	0/1:50,30:32:80:0.375:2	0/1:40,40:33:80:0.500:2	./.	0/1:45,35:32:80:0.438:2
chr1	158577109	rs857685	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,37:32:64:0.578:2	0/1:23,22:32:45:0.489:2	./.	./.	./.	0/1:33,32:31:65:0.492:2	0/1:27,36:32:63:0.571:2	./.	0/1:54,39:34:93:0.419:2	./.	0/1:54,48:33:102:0.471:2
chr1	158577167	rs2427808	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,18:31:36:0.500:2	0/1:16,8:31:24:0.333:2	./.	0/1:19,15:31:34:0.441:2	./.	./.	0/1:35,14:31:49:0.286:2	./.	./.	./.	./.
chr1	158582646	rs2251969	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,44:30:105:0.419:2	0/1:30,23:30:53:0.434:2	./.	./.	./.	0/1:69,58:30:127:0.457:2	0/1:2,64:30:66:0.970:2	0/1:3,92:29:95:0.968:2	0/1:64,71:30:135:0.526:2	0/1:50,47:31:97:0.485:2	0/1:86,71:30:157:0.452:2
chr1	158584091	rs952094	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,17:31:36:0.472:2	0/1:12,10:29:22:0.455:2	./.	./.	./.	0/1:19,22:30:41:0.537:2	0/1:1,21:30:22:0.955:2	0/1:1,47:32:48:0.979:2	0/1:36,21:31:57:0.368:2	0/1:19,15:30:35:0.441:2	0/1:39,36:31:75:0.480:2
chr1	158585029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.
chr1	158587390	rs857716	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,67:32:112:0.598:2	0/1:30,34:32:64:0.531:2	./.	./.	./.	0/1:59,84:31:144:0.587:2	0/1:0,90:32:90:1.00:2	0/1:1,143:31:144:0.993:2	0/1:84,64:32:148:0.432:2	0/1:70,44:31:114:0.386:2	0/1:74,64:32:138:0.464:2
chr1	158587858	rs28525570	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,137:32:138:0.993:2	./.	0/1:71,53:32:124:0.427:2	./.
chr1	158589105	rs138055271	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,64:29:159:0.403:2	0/1:36,29:29:65:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158592935	rs3753068	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,137:33:139:0.986:2	./.	0/1:103,71:33:174:0.408:2	./.
chr1	158597507	rs3737515	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,43:32:43:1.00:2	./.	0/1:22,15:31:37:0.405:2	./.
chr1	158606449	rs3738791	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:31:53:1.00:2	./.	0/1:14,37:31:51:0.725:2	./.
chr1	158607935	rs857725	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,27:33:39:0.692:2	0/1:18,17:33:35:0.486:2	./.	./.	./.	0/1:37,32:33:69:0.464:2	0/1:1,22:32:23:0.957:2	./.	0/1:32,26:33:58:0.448:2	./.	0/1:25,26:33:51:0.510:2
chr1	158612236	rs863931	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,89:29:190:0.468:2	0/1:73,54:29:127:0.425:2	./.	./.	./.	0/1:112,75:29:187:0.401:2	0/1:1,184:30:185:0.995:2	0/1:2,177:30:179:0.989:2	0/1:102,81:29:183:0.443:2	0/1:102,92:30:194:0.474:2	0/1:112,73:28:185:0.395:2
chr1	158619728	rs2482965	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,118:33:118:1.00:2
chr1	158626378	rs857691	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:31:42:0.548:2	0/1:8,13:31:21:0.619:2	./.	./.	./.	0/1:23,21:29:44:0.477:2	0/1:25,22:30:47:0.468:2	./.	0/1:28,33:31:61:0.541:2	./.	0/1:30,31:32:61:0.508:2
chr1	158631171	rs2518493	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,96:33:169:0.568:2	0/1:44,43:33:87:0.494:2	./.	./.	./.	0/1:98,73:32:171:0.427:2	0/1:47,52:32:99:0.525:2	./.	0/1:89,88:33:177:0.497:2	./.	0/1:75,87:33:162:0.537:2
chr1	158644366	rs200605336	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,10:13:67:0.149:2	./.	./.	./.	./.	./.
chr1	158647495	rs325996	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:33:119:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,158:32:158:1.00:2	0/1:0,173:32:173:1.00:2	0/1:0,144:34:144:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,156:33:156:1.00:2
chr1	158647522	rs703121	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,125:32:126:1.00:2	0/1:0,71:32:71:1.00:2	./.	./.	./.	0/1:1,150:33:151:0.993:2	0/1:4,161:32:165:0.976:2	0/1:93,84:32:177:0.475:2	0/1:0,159:33:159:1.00:2	0/1:81,61:32:142:0.430:2	0/1:0,158:32:158:1.00:2
chr1	158655036	rs435080	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,58:31:59:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,79:32:79:1.00:2	0/1:2,71:31:73:0.973:2	0/1:0,91:31:91:1.00:2
chr1	158656281	rs2564858	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,23:32:23:1.00:2	0/1:2,51:32:53:0.962:2	0/1:0,26:32:26:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,76:33:76:1.00:2
chr1	158687163	rs28568406	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,40:32:92:0.435:2	0/1:31,33:33:64:0.516:2	./.	./.	./.	0/1:59,59:32:118:0.500:2	0/1:0,95:32:95:1.00:2	0/1:56,51:33:107:0.477:2	0/1:0,102:34:102:1.00:2	0/1:54,47:33:101:0.465:2	0/1:2,114:33:116:0.983:2
chr1	158687224	rs857703	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:31:66:0.515:2	0/1:31,22:31:53:0.415:2	./.	./.	./.	0/1:57,52:31:109:0.477:2	0/1:0,84:31:84:1.00:2	0/1:58,45:32:103:0.437:2	0/1:0,86:32:86:1.00:2	0/1:44,41:30:85:0.482:2	0/1:0,77:31:77:1.00:2
chr1	158687318	rs139396690	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,90:30:197:0.457:2	./.	./.	./.	./.	./.
chr1	158687896	rs857705	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:33:67:0.448:2	0/1:23,20:32:43:0.465:2	./.	./.	./.	0/1:43,36:32:79:0.456:2	./.	./.	./.	./.	./.
chr1	158724811	rs114533687	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,82:31:168:0.488:2	./.	./.	./.
chr1	158724844	rs16840980	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.
chr1	158725080	rs16841001	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,39:31:87:0.448:2	0/1:71,48:33:119:0.403:2	0/1:57,44:32:101:0.436:2	./.	0/1:46,45:33:91:0.495:2	./.
chr1	158735595	rs857824	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,35:31:71:0.493:2	0/1:25,22:31:47:0.468:2	0/1:0,6:31:6:1.00:2	0/1:0,68:31:68:1.00:2	0/1:1,72:31:73:0.986:2	0/1:41,36:31:77:0.468:2	./.	0/1:50,40:31:90:0.444:2	0/1:0,94:33:94:1.00:2	./.	0/1:1,71:32:72:0.986:2
chr1	158735691	rs857825	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,42:31:120:0.350:2	0/1:23,32:28:55:0.582:2	0/1:0,23:31:23:1.00:2	0/1:0,99:30:99:1.00:2	0/1:3,132:30:135:0.978:2	0/1:80,58:30:138:0.420:2	./.	0/1:99,97:30:196:0.495:2	0/1:0,144:31:144:1.00:2	./.	0/1:1,103:30:104:0.990:2
chr1	158735740	rs857826	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,50:33:129:0.388:2	0/1:30,35:32:65:0.538:2	0/1:0,28:32:28:1.00:2	0/1:0,126:33:126:1.00:2	0/1:2,156:32:158:0.987:2	0/1:79,72:32:151:0.477:2	./.	0/1:86,97:33:184:0.530:2	0/1:0,164:34:164:1.00:2	./.	0/1:0,137:33:138:1.00:2
chr1	158735892	rs857827	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,50:33:80:0.625:2	0/1:17,21:32:38:0.553:2	0/1:0,8:32:8:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,93:32:93:1.00:2	0/1:52,43:32:95:0.453:2	./.	0/1:66,49:32:115:0.426:2	0/1:0,120:33:120:1.00:2	./.	0/1:0,102:32:102:1.00:2
chr1	158736215	rs6666753	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,29:30:29:1.00:2	0/1:19,24:29:43:0.558:2	0/1:0,31:30:31:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,37:30:37:1.00:2	0/1:29,26:31:55:0.473:2
chr1	158736217	rs857828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:32:56:0.518:2
chr1	158736445	rs1864346	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:31:12:0.583:2	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	0/1:12,15:31:28:0.556:2	./.	./.
chr1	158746646	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2	./.	./.	./.	./.
chr1	158746678	rs41273541	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,76:31:160:0.475:2	./.	0/1:97,68:30:165:0.412:2
chr1	158746847	rs16841094	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,52:30:74:0.703:2	./.	0/1:61,26:30:87:0.299:2	./.	0/1:53,34:29:87:0.391:2
chr1	158747043	rs140526095	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,54:29:108:0.500:2	0/1:33,34:28:67:0.507:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158813819	rs857870	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,30:28:30:1.00:2	0/1:0,27:28:27:1.00:2	0/1:3,3:29:6:0.500:2	./.	0/1:1,29:29:30:0.967:2	0/1:32,14:29:46:0.304:2	0/1:19,21:30:40:0.525:2	0/1:30,20:28:50:0.400:2	0/1:27,15:30:42:0.357:2	0/1:21,21:27:42:0.500:2	0/1:30,24:29:54:0.444:2
chr1	158815443	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,64:31:147:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr1	158986430	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.
chr1	158986477	rs866484	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,44:31:122:0.361:2	0/1:67,39:32:106:0.368:2	0/1:8,15:32:23:0.652:2	0/1:96,85:32:181:0.470:2	0/1:2,139:32:141:0.986:2	0/1:2,152:32:154:0.987:2	0/1:106,55:32:161:0.342:2	0/1:0,160:32:160:1.00:2	0/1:3,170:33:174:0.983:2	0/1:1,135:32:136:0.993:2	0/1:0,161:32:161:1.00:2
chr1	158988270	rs11539423	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:30:50:0.460:2	./.	./.	./.	./.
chr1	158990242	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:32:101:0.436:2	./.
chr1	158990247	rs1057024	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,28:33:83:0.337:2	0/1:29,23:32:52:0.442:2	0/1:2,5:33:7:0.714:2	0/1:53,36:33:89:0.404:2	./.	0/1:57,38:33:95:0.400:2	./.	./.	./.	./.	./.
chr1	159002377	rs1057027	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,19:30:40:0.475:2	0/1:8,7:32:15:0.467:2	./.	0/1:26,21:32:47:0.447:2	0/1:0,28:32:28:1.00:2	0/1:20,21:31:41:0.512:2	0/1:21,11:33:32:0.344:2	0/1:1,37:32:38:0.974:2	0/1:0,35:31:35:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,39:31:39:1.00:2
chr1	159002389	rs1057028	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,20:32:44:0.455:2	0/1:10,8:33:18:0.444:2	./.	0/1:36,24:31:60:0.400:2	0/1:0,31:31:31:1.00:2	0/1:23,23:31:47:0.500:2	0/1:24,14:31:38:0.368:2	0/1:1,51:31:52:0.981:2	0/1:0,45:32:45:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,41:31:42:0.976:2
chr1	159015196	rs200732327	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,63:32:197:0.320:2	./.	./.
chr1	159019331	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,20:32:192:0.104:2	./.	./.
chr1	159021506	rs62621173	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.
chr1	159024668	rs6940	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,53:32:125:0.424:2	0/1:69,37:32:106:0.349:2	0/1:7,10:32:17:0.588:2	0/1:65,52:32:118:0.444:2	./.	0/1:63,37:31:100:0.370:2	./.	./.	./.	./.	./.
chr1	159163779	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.
chr1	159169593	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.
chr1	159169641	rs862999	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:30:96:0.990:2	0/1:0,53:30:53:1.00:2	0/1:13,16:29:29:0.552:2	0/1:2,107:30:109:0.982:2	0/1:0,173:30:173:1.00:2	0/1:3,123:29:126:0.976:2	0/1:113,77:30:190:0.405:2	0/1:0,171:30:171:1.00:2	0/1:1,121:30:122:0.992:2	0/1:53,38:29:91:0.418:2	./.
chr1	159175354	rs12075	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,138:31:139:0.993:2	0/1:0,65:32:65:1.00:2	./.	0/1:1,117:31:118:0.992:2	0/1:5,113:31:119:0.958:2	0/1:68,78:31:146:0.534:2	0/1:81,67:31:148:0.453:2	0/1:87,87:31:174:0.500:2	0/1:78,92:32:170:0.541:2	0/1:0,109:31:110:1.00:2	./.
chr1	159175527	rs13962	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,105:31:108:0.972:2	0/1:1,69:31:70:0.986:2	./.	0/1:84,70:31:154:0.455:2	0/1:81,74:31:155:0.477:2	./.	./.	./.	0/1:63,55:32:118:0.466:2	./.	./.
chr1	159277689	rs41264475	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,32:31:49:0.667:2	./.	./.	./.
chr1	159283494	rs58037016	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:33:45:0.444:2	./.	./.	./.	0/1:60,38:32:98:0.388:2
chr1	159283746	rs11265165	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:27:12:0.417:2	./.	./.	./.	0/1:42,43:27:85:0.506:2	./.	./.	./.	0/1:51,42:27:93:0.452:2
chr1	159283884	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr1	159409734	rs10908722	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:32:175:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,191:31:191:1.00:2	0/1:0,184:32:184:1.00:2	0/1:0,190:31:190:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,188:32:188:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,183:32:183:1.00:2
chr1	159409757	rs35634161	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,83:30:184:0.451:2	./.	./.	./.	./.	./.	./.	./.
chr1	159409857	rs12048482	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,133:32:135:0.985:2	0/1:0,86:32:86:1.00:2	./.	0/1:85,71:31:156:0.455:2	0/1:1,101:31:102:0.990:2	0/1:67,62:31:129:0.481:2	0/1:62,63:31:125:0.504:2	0/1:2,137:31:139:0.986:2	0/1:0,159:32:159:1.00:2	0/1:0,114:32:114:1.00:2	./.
chr1	159409884	rs12118628	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:29:9:0.556:2	./.	./.	0/1:73,56:29:129:0.434:2	./.	./.	./.	./.	0/1:73,68:31:141:0.482:2
chr1	159410101	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.
chr1	159410217	rs41264477	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,63:30:173:0.364:2	./.	./.	./.	./.	./.	./.
chr1	159505101	rs35393723	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,41:33:100:0.410:2	0/1:32,23:32:55:0.418:2	./.	0/1:42,64:32:106:0.604:2	./.	./.	./.	./.	./.	0/1:36,48:32:84:0.571:2	./.
chr1	159505297	rs4656837	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,57:32:105:0.543:2	0/1:52,29:31:81:0.358:2	0/1:10,4:32:14:0.286:2	0/1:64,73:31:137:0.533:2	0/1:0,86:32:86:1.00:2	0/1:1,134:31:135:0.993:2	0/1:55,57:32:112:0.509:2	0/1:1,113:32:114:0.991:2	0/1:0,129:33:129:1.00:2	0/1:50,55:32:105:0.524:2	0/1:80,59:32:139:0.424:2
chr1	159557959	rs145110984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2
chr1	159558258	rs2808661	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,42:32:42:1.00:2	0/1:29,24:32:53:0.453:2	0/1:0,31:32:31:1.00:2	0/1:0,69:32:69:1.00:2	0/1:39,44:33:83:0.530:2	0/1:28,21:33:49:0.429:2	0/1:0,84:32:84:1.00:2
chr1	159752066	rs1129923	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,89:32:167:0.539:2	./.	0/1:65,81:32:146:0.555:2	./.	0/1:0,126:32:126:1.00:2
chr1	159776366	rs61821626	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,76:29:77:0.987:2	./.	./.	./.	0/1:80,86:31:166:0.518:2	./.	./.
chr1	159778910	rs72700615	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,51:30:52:0.981:2	./.	./.	./.	0/1:51,47:31:99:0.480:2	./.	./.
chr1	159778983	rs12083967	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,52:30:52:1.00:2	./.	./.	./.	0/1:37,37:30:74:0.500:2	./.	./.
chr1	159785284	rs4411129	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,33:33:77:0.429:2	0/1:21,20:33:41:0.488:2	0/1:0,14:32:14:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,107:32:107:1.00:2	0/1:94,65:32:160:0.409:2	0/1:122,71:32:193:0.368:2	0/1:70,74:33:144:0.514:2	0/1:0,85:32:85:1.00:2	0/1:51,51:32:102:0.500:2
chr1	159785413	rs61823162	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,29:30:29:1.00:2	./.	./.	./.	0/1:26,38:32:64:0.594:2	./.	./.
chr1	159785425	rs4443889	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,27:32:27:1.00:2	./.	./.	./.	0/1:25,30:33:55:0.545:2	./.	./.
chr1	159799910	rs34687326	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.	0/1:25,33:33:58:0.569:2	./.	0/1:17,19:31:36:0.528:2
chr1	159810939	rs41264825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,94:31:94:1.00:2	./.	./.	./.	./.	./.
chr1	159824967	rs2501340	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:33:98:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,120:33:120:1.00:2	0/1:92,56:32:148:0.378:2	./.	0/1:1,120:33:121:0.992:2	0/1:0,133:32:133:1.00:2	0/1:1,106:34:107:0.991:2	0/1:0,76:33:76:1.00:2	0/1:0,60:33:60:1.00:2
chr1	159828613	rs62624468	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	159850401	rs7550537	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,87:33:191:0.455:2	./.	./.
chr1	159854251	rs16842789	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2
chr1	159888664	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:34:131:0.031:2	./.	./.	./.
chr1	159890237	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:33:163:0.025:2	./.	./.	./.	./.
chr1	159898100	rs3747615	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,7:29:26:0.269:2	./.	./.	0/1:7,12:30:19:0.632:2	0/1:0,11:29:11:1.00:2	0/1:17,5:30:22:0.227:2	0/1:2,7:29:9:0.778:2
chr1	159904539	rs35702833	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	159921624	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	159923111	rs2789417	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:33:155:1.00:2	0/1:0,80:32:80:1.00:2	0/1:7,13:32:20:0.650:2	0/1:1,141:33:142:0.993:2	0/1:0,108:32:108:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,129:33:129:1.00:2	0/1:1,172:33:173:0.994:2	0/1:0,161:34:161:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,153:33:153:1.00:2
chr1	159923885	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.
chr1	159923904	rs145274502	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160000435	rs12409352	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,90:30:93:0.968:2	./.	./.	./.	0/1:4,136:30:140:0.971:2	0/1:75,40:31:115:0.348:2	./.	./.
chr1	160000927	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	160011512	rs1130183	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,79:31:154:0.513:2	./.	./.	./.	./.	./.	./.	./.
chr1	160057361	rs116253846	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160057522	rs3001040	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	0/1:0,3:31:3:1.00:2	./.	0/1:4,4:33:8:0.500:2	./.	0/1:1,10:29:11:0.909:2
chr1	160062340	rs41265757	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,18:30:30:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr1	160062472	rs2295622	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,5:32:11:0.455:2	0/1:2,3:31:5:0.600:2	./.	0/1:2,10:30:12:0.833:2	./.	./.	./.	./.	./.	./.	./.
chr1	160062727	rs2295621	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,13:28:54:0.241:2	0/1:23,16:28:39:0.410:2	./.	0/1:14,25:27:39:0.641:2	./.	./.	./.	./.	./.	./.	./.
chr1	160064810	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.
chr1	160093165	rs116711766	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,49:32:101:0.485:2	./.	./.	./.	./.	./.
chr1	160098456	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:34:70:0.057:2	./.	./.	./.	./.
chr1	160098543	rs1063125	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,51:32:108:0.472:2	./.	0/1:41,67:33:108:0.620:2	0/1:62,55:33:117:0.470:2	./.
chr1	160105381	rs147183887	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,65:27:134:0.485:2
chr1	160106787	rs201048446	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,9:15:55:0.164:2	0/1:91,13:14:104:0.125:2	0/1:57,13:15:70:0.186:2	0/1:90,18:12:108:0.167:2	0/1:79,16:14:95:0.168:2	0/1:50,9:14:59:0.153:2	./.	0/1:34,9:14:43:0.209:2
chr1	160121899	rs77332724	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.
chr1	160124875	rs6427504	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,23:32:51:0.451:2	0/1:5,12:32:17:0.706:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:19,25:31:44:0.568:2	0/1:1,24:31:25:0.960:2	0/1:0,52:31:52:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,32:31:32:1.00:2	./.
chr1	160134056	rs17368402	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,83:32:187:0.444:2	0/1:101,88:32:189:0.466:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160134205	rs11265338	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,21:31:56:0.375:2	0/1:3,171:29:174:0.983:2	0/1:2,174:30:176:0.989:2	0/1:0,149:30:149:1.00:2	0/1:84,69:30:153:0.451:2	0/1:79,73:30:152:0.480:2	./.	0/1:76,107:30:183:0.585:2	0/1:1,173:30:174:0.994:2
chr1	160136350	rs7529215	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,16:32:16:1.00:2	0/1:68,97:31:165:0.588:2	./.	./.	0/1:0,118:32:118:1.00:2	0/1:67,107:31:174:0.615:2	0/1:0,133:32:133:1.00:2	0/1:1,128:32:129:0.992:2	./.
chr1	160141196	rs625549	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:32:114:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,132:31:132:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,143:32:143:1.00:2
chr1	160151577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr1	160178376	rs3789040	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:32:14:0.643:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160267451	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.
chr1	160303416	rs1802778	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,15:33:26:0.577:2	0/1:5,3:31:8:0.375:2	./.	0/1:21,13:31:34:0.382:2	./.	./.	./.	0/1:28,23:32:51:0.451:2	0/1:15,22:32:37:0.595:2	0/1:0,35:31:35:1.00:2	./.
chr1	160303443	rs188665868	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,22:33:38:0.579:2	./.	./.	./.	./.	./.	./.
chr1	160321065	rs12239747	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,84:32:174:0.483:2	./.	./.	./.
chr1	160321499	rs6664627	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,81:32:185:0.438:2	./.	./.	./.
chr1	160340900	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.	./.	./.	./.
chr1	160341110	rs114483127	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.
chr1	160341142	rs10908778	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:31:66:0.470:2	./.	./.
chr1	160341876	rs2147472	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:65,43:31:108:0.398:2	0/1:34,21:30:55:0.382:2	./.	0/1:86,58:30:144:0.403:2	./.	./.	./.	0/1:99,44:30:143:0.308:2	./.	0/1:2,94:31:96:0.979:2	./.
chr1	160341962	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2
chr1	160342015	rs7521304	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:1,34:30:35:0.971:2	./.	0/1:30,41:30:71:0.577:2	./.	./.	./.	0/1:40,39:30:79:0.494:2	0/1:46,28:31:74:0.378:2	0/1:0,34:30:34:1.00:2	./.
chr1	160342162	rs10637656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr1	160393905	rs12086448	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:122:1.00:2	0/1:0,45:32:45:1.00:2	0/1:13,10:30:23:0.435:2	0/1:78,89:31:167:0.533:2	./.	./.	0/1:81,84:31:165:0.509:2	0/1:93,87:32:180:0.483:2	./.	0/1:0,139:31:139:1.00:2	./.
chr1	160394937	rs17380127	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,38:32:96:0.400:2	0/1:38,16:32:54:0.296:2	0/1:6,3:33:9:0.333:2	0/1:52,63:32:115:0.548:2	./.	./.	./.	./.	./.	0/1:1,83:32:84:0.988:2	./.
chr1	160395003	rs17380141	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,40:32:80:0.500:2	0/1:24,21:33:45:0.467:2	0/1:6,4:32:10:0.400:2	0/1:52,47:32:99:0.475:2	./.	./.	./.	./.	./.	0/1:1,78:32:79:0.987:2	./.
chr1	160460969	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2
chr1	160461060	rs16832061	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:32:113:0.354:2	./.	./.	./.	./.
chr1	160493005	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.
chr1	160518115	rs111536196	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:31:76:0.408:2	./.	./.
chr1	160535471	rs35600010	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:33:60:0.417:2	./.
chr1	160580549	rs3796504	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,15:31:29:0.517:2	./.	./.	./.	./.	./.	./.	0/1:103,89:31:192:0.464:2	./.
chr1	160604473	rs164288	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,12:32:15:0.800:2	./.	./.	./.	0/1:93,99:32:192:0.516:2	./.	./.	0/1:84,51:33:135:0.378:2	./.
chr1	160616703	rs2295612	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,65:30:120:0.542:2	0/1:81,53:30:134:0.396:2	./.	0/1:105,49:31:154:0.318:2	./.	0/1:59,80:31:139:0.576:2
chr1	160654758	rs2295615	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,19:32:34:0.559:2	./.	./.	./.	./.	./.	0/1:101,68:34:170:0.402:2	0/1:102,73:33:175:0.417:2	./.
chr1	160654786	rs1980606	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.	0/1:75,56:31:132:0.427:2	0/1:72,55:31:127:0.433:2	0/1:105,69:31:175:0.397:2
chr1	160709100	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,19:13:119:0.160:2	./.	0/1:120,18:11:138:0.130:2	./.	./.	./.
chr1	160793442	rs474131	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,79:31:174:0.454:2	./.	./.	0/1:92,84:31:176:0.477:2	./.	0/1:91,81:32:172:0.471:2	./.	./.
chr1	160793560	rs509749	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,64:29:114:0.561:2	./.	./.	0/1:67,43:31:110:0.391:2	./.	0/1:47,45:31:92:0.489:2	./.	./.
chr1	160793962	rs506081	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,40:33:93:0.430:2	./.	./.	0/1:65,37:32:103:0.363:2	./.	0/1:67,29:33:96:0.302:2	./.	./.
chr1	160793995	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.
chr1	160808230	rs375871180	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.
chr1	160851826	rs2274907	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,160:31:161:0.994:2	0/1:0,83:31:83:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,175:31:175:1.00:2	0/1:1,150:31:151:0.993:2	0/1:77,94:31:171:0.550:2	0/1:0,170:31:170:1.00:2	0/1:90,85:31:175:0.486:2	0/1:80,84:32:164:0.512:2	0/1:83,75:31:158:0.475:2	0/1:0,127:32:128:1.00:2
chr1	160851894	rs2274908	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,108:31:109:0.991:2	0/1:0,58:31:58:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,127:31:127:1.00:2	0/1:1,123:31:124:0.992:2	0/1:69,82:30:151:0.543:2	0/1:1,147:31:148:0.993:2	0/1:81,63:31:144:0.438:2	0/1:68,77:32:145:0.531:2	0/1:61,57:31:118:0.483:2	0/1:0,70:31:70:1.00:2
chr1	160920372	rs12094026	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160920431	rs12090411	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160920441	rs79889663	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,36:32:77:0.468:2	0/1:25,31:32:56:0.554:2	./.	./.	./.	./.	./.	0/1:113,61:31:174:0.351:2	./.	./.	./.
chr1	160920902	rs61469377	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160920966	rs6680969	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,48:31:105:0.457:2	0/1:30,28:32:58:0.483:2	0/1:7,14:31:21:0.667:2	0/1:3,132:31:136:0.978:2	0/1:68,93:31:161:0.578:2	0/1:54,56:30:110:0.509:2	0/1:3,159:31:162:0.981:2	0/1:96,82:31:179:0.461:2	0/1:71,61:32:132:0.462:2	0/1:130,4:33:134:0.030:2	0/1:0,120:32:120:1.00:2
chr1	160971146	rs790055	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:8,4:35:12:0.333:2	0/1:5,4:32:9:0.444:2	0/1:32,23:33:55:0.418:2	0/1:0,39:32:39:1.00:2	0/1:1,26:32:27:0.963:2	0/1:18,13:33:31:0.419:2	0/1:0,56:32:56:1.00:2	0/1:39,20:33:59:0.339:2	0/1:0,33:33:33:1.00:2	0/1:36,23:33:59:0.390:2
chr1	160971155	rs2297219	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,9:32:22:0.409:2	./.	./.	0/1:29,18:33:47:0.383:2	0/1:20,16:32:36:0.444:2	0/1:8,16:32:24:0.667:2	0/1:13,9:33:22:0.409:2	./.	0/1:35,20:33:55:0.364:2	./.	0/1:37,20:33:57:0.351:2
chr1	160990875	rs28365980	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:29:27:0.148:2	0/1:19,20:31:39:0.513:2	./.	0/1:1,35:31:36:0.972:2	./.	0/1:0,19:32:19:1.00:2	./.
chr1	160990876	rs28365979	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:29:27:0.148:2	0/1:20,20:29:40:0.500:2	./.	0/1:1,35:29:36:0.972:2	./.	0/1:0,19:29:19:1.00:2	./.
chr1	160990878	rs28365978	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:26:28:0.143:2	0/1:19,20:29:39:0.513:2	./.	0/1:1,35:31:36:0.972:2	./.	0/1:0,20:32:20:1.00:2	./.
chr1	161012432	rs199606185	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,50:29:103:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr1	161016801	rs17215366	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,43:29:91:0.473:2	./.	0/1:46,40:30:86:0.465:2	./.
chr1	161016890	rs17215373	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,18:31:59:0.305:2
chr1	161017556	rs2774279	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,21:30:57:0.368:2	0/1:23,30:31:53:0.566:2	./.	0/1:59,29:31:88:0.330:2	./.	0/1:36,32:32:68:0.471:2	./.
chr1	161017761	rs112388093	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,66:31:139:0.475:2	./.	0/1:30,45:31:75:0.600:2	./.
chr1	161019040	rs3813609	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,19:29:48:0.396:2	0/1:8,10:28:18:0.556:2	./.	0/1:49,32:30:81:0.395:2	0/1:1,57:28:58:0.983:2	0/1:0,61:28:61:1.00:2	0/1:38,31:28:71:0.449:2	0/1:68,40:28:108:0.370:2	0/1:39,34:30:73:0.466:2	0/1:42,31:29:73:0.425:2	0/1:31,40:29:71:0.563:2
chr1	161024211	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.	./.	./.
chr1	161044490	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,6:31:125:0.048:2	./.
chr1	161049383	rs77444104	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161068836	rs11576830	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:26:3:1.00:2	./.	./.	./.	./.	./.
chr1	161088583	rs41270017	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:29:40:0.550:2	./.	0/1:15,29:28:44:0.659:2
chr1	161089064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2
chr1	161094190	rs1135783	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,78:29:154:0.506:2	./.	0/1:74,73:28:147:0.497:2
chr1	161128259	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.
chr1	161130700	rs137880709	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,6:33:83:0.072:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161130701	rs34779722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,55:31:96:0.573:2	./.	./.	./.	./.	./.
chr1	161132777	rs17356051	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	0/1:39,21:30:60:0.350:2	./.
chr1	161132821	rs1127525	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:27:93:0.419:2	./.	./.	./.
chr1	161139738	rs36013429	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,67:33:137:0.489:2	./.	0/1:71,47:32:118:0.398:2
chr1	161143801	rs3813619	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:33:45:0.400:2	./.	0/1:28,20:31:48:0.417:2
chr1	161145005	rs3813620	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:33:33:0.424:2	./.	0/1:13,23:33:36:0.639:2
chr1	161161284	rs41270041	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:29:68:0.426:2	./.	0/1:28,44:28:72:0.611:2
chr1	161163037	rs4233367	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,28:31:29:0.966:2	0/1:0,16:31:16:1.00:2	0/1:0,3:33:3:1.00:2	0/1:23,15:30:38:0.395:2	./.	0/1:0,36:31:36:1.00:2	./.	0/1:26,21:29:47:0.447:2	0/1:17,27:31:44:0.614:2	0/1:24,6:31:30:0.200:2	0/1:18,20:29:38:0.526:2
chr1	161168004	rs33941127	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,17:32:45:0.378:2	0/1:18,15:32:33:0.455:2	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	0/1:26,25:33:51:0.490:2	./.
chr1	161168189	rs34448954	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,18:25:37:0.486:2	0/1:12,4:31:16:0.250:2	./.	./.	./.	0/1:19,19:28:39:0.500:2	./.	./.	./.	./.	./.
chr1	161172233	rs11538340	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:30:28:0.679:2	./.	0/1:12,8:28:21:0.400:2
chr1	161180119	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.
chr1	161182208	rs11576415	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:30:29:0.414:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	0/1:34,25:32:59:0.424:2	./.	./.	./.	./.	./.
chr1	161183449	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr1	161183516	rs1136207	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,31:32:68:0.456:2	./.	0/1:29,36:32:65:0.554:2	./.	./.	./.	./.	./.
chr1	161185157	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:34:145:0.028:2	./.	./.
chr1	161202605	rs2307424	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,29:33:62:0.468:2	0/1:14,11:32:25:0.440:2	0/1:3,4:33:7:0.571:2	0/1:34,36:33:70:0.514:2	./.	0/1:0,73:32:73:1.00:2	./.	./.	0/1:45,37:33:82:0.451:2	0/1:27,24:32:51:0.471:2	./.
chr1	161203003	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,19:10:114:0.167:2	./.	./.	./.	./.
chr1	161254246	rs41270859	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,95:33:166:0.572:2	./.	0/1:102,73:33:175:0.417:2	./.
chr1	161275729	rs34307129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,60:30:111:0.541:2	./.
chr1	161276207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:29:99:0.040:2	./.	./.	./.	./.
chr1	161332124	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:32:166:0.042:2	./.	./.	./.
chr1	161332125	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:31:153:0.033:2	./.	./.	./.	./.	./.
chr1	161332174	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.
chr1	161336240	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.
chr1	161337604	rs41270861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:31:71:0.451:2	./.	./.	./.	./.	./.
chr1	161475750	rs10494360	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,103:32:199:0.518:2	./.	./.	./.	0/1:125,67:32:192:0.349:2
chr1	161476160	rs201954965	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr1	161476204	rs9427397	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,80:32:181:0.442:2	./.	./.	./.	0/1:108,82:32:190:0.432:2
chr1	161476205	rs9427398	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,80:32:187:0.428:2	./.	./.	./.	0/1:105,84:32:189:0.444:2
chr1	161476326	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,16:30:196:0.082:2	./.	./.	./.	0/1:181,14:33:195:0.072:2	./.	./.
chr1	161476343	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,10:30:178:0.056:2	0/1:126,6:32:132:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161479611	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:31:163:0.025:2	0/1:112,7:31:119:0.059:2	./.	./.	./.	./.	./.	./.
chr1	161479663	rs4986941	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,7:25:196:0.036:2	./.	./.	./.	./.	./.	./.
chr1	161479745	rs1801274	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,183:29:188:0.973:2	0/1:2,167:28:169:0.988:2	0/1:15,11:28:26:0.423:2	0/1:99,95:29:194:0.490:2	0/1:101,96:29:197:0.487:2	0/1:1,178:29:179:0.994:2	0/1:84,104:28:188:0.553:2	0/1:104,90:28:194:0.464:2	0/1:0,188:29:188:1.00:2	0/1:110,87:29:197:0.442:2	0/1:107,88:28:195:0.451:2
chr1	161479748	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	0/1:191,7:32:198:0.035:2	./.	./.	./.	./.
chr1	161479757	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	0/1:188,6:31:194:0.031:2	0/1:190,7:31:197:0.036:2	./.	./.	0/1:191,6:27:197:0.030:2	./.
chr1	161479832	rs141094947	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:179,7:30:186:0.038:2	./.	0/1:188,5:29:193:0.026:2	./.	./.	./.	./.	./.	0/1:179,5:31:185:0.027:2	./.
chr1	161480649	rs11810143	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,76:30:148:0.514:2	./.	./.	./.	0/1:68,89:30:157:0.567:2
chr1	161480691	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,6:29:190:0.032:2	0/1:161,4:33:165:0.024:2	./.	0/1:158,6:32:164:0.037:2	0/1:171,7:29:178:0.039:2	./.	./.	0/1:176,6:27:182:0.033:2
chr1	161483656	rs56157533	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,49:32:197:0.249:2	./.	./.	./.	0/1:150,43:31:193:0.223:2
chr1	161483723	rs409763	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:136,11:32:147:0.075:2	0/1:123,20:31:143:0.140:2	./.	./.	0/1:164,8:29:172:0.047:2	0/1:183,10:31:193:0.052:2	./.	0/1:185,9:30:194:0.046:2	0/1:172,9:32:181:0.050:2	./.	./.
chr1	161483750	rs395463	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,26:31:159:0.164:2	./.	./.	./.	0/1:156,33:31:189:0.175:2
chr1	161487805	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,39:33:189:0.206:2	0/1:129,15:32:144:0.104:2	0/1:29,7:34:36:0.194:2	0/1:162,18:31:180:0.100:2	0/1:127,15:32:142:0.106:2	./.	0/1:146,22:32:168:0.131:2	0/1:178,20:33:198:0.101:2	./.	0/1:152,8:31:160:0.050:2	0/1:153,42:33:196:0.215:2
chr1	161487863	rs143182858	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,167:31:186:0.898:2	0/1:124,69:31:193:0.358:2	./.	./.	./.	./.	0/1:108,67:31:175:0.383:2	./.
chr1	161494595	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,3:32:35:0.086:2	0/1:29,7:30:36:0.194:2	./.	./.	./.	0/1:22,3:30:25:0.120:2	./.	./.	./.	./.	./.
chr1	161495040	rs63749092	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,134:29:139:0.971:2	0/1:88,72:28:160:0.450:2	./.	./.	./.	./.	0/1:86,50:30:136:0.368:2	./.
chr1	161495153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,15:31:177:0.085:2	./.	./.	./.	./.	./.
chr1	161495477	rs72633678	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:132,61:31:193:0.316:2	0/1:72,40:31:112:0.357:2	./.	0/1:0,156:31:157:1.00:2	0/1:1,180:31:181:0.994:2	0/1:93,78:31:171:0.456:2	0/1:89,91:32:180:0.506:2	./.	0/1:2,155:32:157:0.987:2	0/1:60,55:32:115:0.478:2	0/1:0,118:32:119:1.00:2
chr1	161495571	rs140052915	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,31:31:149:0.208:2	0/1:96,47:31:143:0.329:2	./.	./.	./.	0/1:89,51:31:140:0.364:2	0/1:85,25:32:110:0.227:2	./.
chr1	161495885	rs404508	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,60:32:190:0.316:2	0/1:82,42:31:124:0.339:2	0/1:6,7:32:13:0.538:2	0/1:0,150:32:150:1.00:2	0/1:1,182:31:183:0.995:2	0/1:0,190:32:190:1.00:2	0/1:107,86:32:194:0.446:2	0/1:107,89:32:196:0.454:2	0/1:0,187:33:187:1.00:2	0/1:0,149:32:150:1.00:2	0/1:0,169:32:169:1.00:2
chr1	161496031	rs570167	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.	./.	0/1:187,8:32:196:0.041:2	0/1:186,7:33:193:0.036:2	./.	./.	./.	./.
chr1	161496042	rs3820450	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,10:29:193:0.052:2	0/1:176,10:30:186:0.054:2	./.	./.	./.	./.
chr1	161496134	rs753856	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,95:32:103:0.922:2	0/1:74,41:32:115:0.357:2	./.	./.	./.	./.	0/1:73,37:33:110:0.336:2	./.
chr1	161496178	rs368844	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,81:32:86:0.953:2	0/1:86,33:31:119:0.277:2	./.	./.	./.	./.	0/1:70,35:32:105:0.333:2	./.
chr1	161496530	rs1042881	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:140,36:32:176:0.205:2	0/1:103,36:31:139:0.259:2	./.	./.	0/1:55,32:31:88:0.368:2	0/1:68,56:32:124:0.452:2	./.	./.	0/1:2,124:32:126:0.984:2	./.	0/1:104,81:32:185:0.438:2
chr1	161514542	rs396991	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:3,101:32:104:0.971:2	0/1:32,36:31:68:0.529:2	0/1:43,56:32:99:0.566:2	0/1:39,34:33:73:0.466:2	0/1:52,55:32:107:0.514:2	./.	0/1:1,102:32:103:0.990:2	0/1:73,67:32:140:0.479:2
chr1	161514659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:29:159:0.031:2	./.
chr1	161518214	rs148181339	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:139,58:33:197:0.294:2	0/1:134,62:31:196:0.316:2	./.	./.	./.	./.	0/1:142,55:32:197:0.279:2	0/1:178,22:32:200:0.110:2	./.	./.	0/1:121,74:33:195:0.379:2
chr1	161518233	rs139622799	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,24:32:54:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161518286	rs200727785	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,4:28:70:0.057:2	0/1:170,25:31:196:0.128:2	0/1:173,25:30:198:0.126:2	0/1:175,21:31:196:0.107:2	0/1:177,17:30:195:0.088:2	0/1:194,5:29:199:0.025:2	0/1:158,34:32:192:0.177:2	0/1:165,18:30:183:0.098:2	./.
chr1	161518297	rs52820103	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,13:31:194:0.067:2	./.	./.	./.	./.	./.
chr1	161518314	rs114535887	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:149,39:32:188:0.207:2	0/1:147,46:32:193:0.238:2	./.	./.	./.	./.	0/1:139,60:31:199:0.302:2	0/1:119,76:32:195:0.390:2	./.	./.	./.
chr1	161518333	rs10127939	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,59:31:198:0.298:2	./.	./.	./.	0/1:126,58:31:184:0.315:2
chr1	161518336	rs77144485	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,54:29:184:0.293:2	0/1:133,60:31:195:0.311:2	./.	./.	./.	0/1:163,29:30:192:0.151:2	0/1:166,30:31:196:0.153:2	0/1:175,18:27:194:0.093:2	./.	./.	0/1:115,66:31:183:0.365:2
chr1	161518416	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,8:31:156:0.051:2	./.	./.	./.	0/1:161,8:31:169:0.047:2	./.	./.
chr1	161518422	rs200475280	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:34:165:0.030:2	./.	./.
chr1	161551245	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,43:32:196:0.219:2	./.	./.	./.	0/1:148,42:32:190:0.221:2
chr1	161558265	rs144725145	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:113,75:32:188:0.399:2	0/1:106,62:32:168:0.369:2	./.	./.	./.	./.	0/1:146,43:32:189:0.228:2	0/1:125,67:31:192:0.349:2	./.	./.	0/1:107,68:32:175:0.389:2
chr1	161559554	rs34498508	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,29:32:195:0.149:2	./.	./.	./.	0/1:178,15:32:193:0.078:2	./.	./.
chr1	161559571	rs138747765	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:64,117:31:182:0.646:2	0/1:72,112:31:184:0.609:2	./.	./.	./.	./.	0/1:87,99:31:186:0.532:2	0/1:75,94:31:169:0.556:2	./.	./.	0/1:49,102:30:151:0.675:2
chr1	161560943	rs370748254	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,13:15:143:0.091:2	./.	./.	0/1:71,18:10:90:0.202:2	0/1:112,24:11:137:0.176:2	0/1:135,34:10:169:0.201:2	./.	./.	./.	./.	0/1:87,17:14:104:0.163:2
chr1	161561154	rs201842559	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,27:28:182:0.148:2	./.	./.	./.	./.	./.	0/1:157,17:28:174:0.098:2	./.
chr1	161561967	rs200642147	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,45:32:174:0.259:2	./.	./.	0/1:112,81:33:193:0.420:2	./.	./.	./.	./.	./.
chr1	161565314	rs79316700	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,15:32:53:0.283:2	./.	./.	./.	0/1:54,21:31:75:0.280:2
chr1	161565324	rs61801822	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,181:32:181:1.00:2	0/1:0,94:32:94:1.00:2	0/1:14,5:32:19:0.263:2	./.	0/1:66,48:32:115:0.421:2	0/1:99,95:32:194:0.490:2	0/1:3,47:32:50:0.940:2	0/1:0,43:32:43:1.00:2	0/1:1,83:33:84:0.988:2	./.	0/1:0,82:32:82:1.00:2
chr1	161565381	rs76277413	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,52:32:149:0.349:2	./.	./.	0/1:124,5:31:129:0.039:2	0/1:121,68:31:189:0.360:2
chr1	161565408	rs114010589	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:29:153:0.033:2	./.	./.	0/1:103,5:32:108:0.046:2	./.
chr1	161569419	rs430178	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,28:33:28:1.00:2	0/1:52,19:31:71:0.268:2	./.	0/1:1,53:32:54:0.981:2	0/1:0,45:33:45:1.00:2	./.	0/1:0,35:33:35:1.00:2	0/1:0,59:32:59:1.00:2
chr1	161569518	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,27:31:131:0.206:2	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	0/1:97,8:29:105:0.076:2	./.
chr1	161569533	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.
chr1	161569569	rs138731942	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:30:35:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161596014	rs71632957	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,8:33:132:0.061:2	0/1:178,8:32:186:0.043:2	0/1:189,6:32:195:0.031:2	./.	0/1:116,5:33:121:0.041:2	./.	0/1:126,5:31:131:0.038:2	./.
chr1	161596032	rs114169903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,47:30:190:0.247:2	./.	./.	./.	./.	./.
chr1	161599571	rs199890941	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,67:31:118:0.568:2	0/1:21,39:31:60:0.650:2	./.	./.	./.	./.	0/1:138,26:32:164:0.159:2	0/1:62,131:32:193:0.679:2	./.	./.	0/1:40,93:32:133:0.699:2
chr1	161599590	rs368410676	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:33:21:0.238:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161599643	rs147574249	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,74:31:75:0.987:2	0/1:0,42:31:42:1.00:2	0/1:16,4:31:20:0.200:2	./.	./.	0/1:162,26:30:188:0.138:2	0/1:164,27:32:191:0.141:2	./.	./.	./.	0/1:3,70:29:74:0.959:2
chr1	161599654	rs5030738	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,70:30:193:0.363:2	./.	./.	./.	./.	./.
chr1	161599693	rs76714703	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:31:23:1.00:2	0/1:0,136:32:137:1.00:2	0/1:0,187:32:187:1.00:2	0/1:39,144:32:184:0.787:2	0/1:75,104:33:179:0.581:2	./.	0/1:0,177:33:177:1.00:2	0/1:0,109:32:109:1.00:2	./.
chr1	161599773	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.	0/1:3,4:34:7:0.571:2
chr1	161599779	rs200688856	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:33:6:1.00:2	./.	./.	./.
chr1	161633049	rs148087564	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,38:32:198:0.192:2	./.	./.	./.	0/1:158,35:31:193:0.181:2
chr1	161640095	rs138321848	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:105,79:32:185:0.429:2	0/1:104,65:32:169:0.385:2	./.	./.	./.	./.	0/1:152,32:31:184:0.174:2	0/1:129,55:31:184:0.299:2	./.	./.	0/1:101,82:31:183:0.448:2
chr1	161641210	rs181249089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,5:31:189:0.026:2	./.	./.	./.	./.	./.	./.
chr1	161641218	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:30:193:0.026:2	./.	./.	./.	./.	./.	./.
chr1	161641384	rs6665610	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,114:30:190:0.600:2	./.	./.	./.	0/1:45,142:32:187:0.759:2	./.	./.
chr1	161641401	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:154,22:32:176:0.125:2	0/1:139,21:32:160:0.131:2	./.	./.	./.	./.	0/1:181,12:32:193:0.062:2	0/1:174,18:30:192:0.094:2	./.	./.	0/1:173,15:29:188:0.080:2
chr1	161642766	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,10:29:161:0.062:2	./.	0/1:162,6:31:168:0.036:2	./.	./.	./.	./.	./.
chr1	161642774	rs200112434	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:11:18:0.444:2	./.	./.	0/1:140,32:11:173:0.186:2	0/1:134,32:10:166:0.193:2	0/1:132,39:11:171:0.228:2	./.	0/1:123,13:17:136:0.096:2	0/1:99,21:17:120:0.175:2
chr1	161642818	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,9:32:168:0.054:2	./.	0/1:152,7:28:159:0.044:2	./.	./.	./.	./.	./.
chr1	161642985	rs182968886	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,166:30:184:0.902:2	./.	./.	./.	./.	./.	0/1:104,78:30:182:0.429:2	./.
chr1	161643798	rs1050501	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,32:32:187:0.172:2	./.	./.	0/1:122,71:32:193:0.368:2	./.	./.	./.	./.	./.
chr1	161645058	rs148534844	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,33:33:187:0.177:2	0/1:81,23:32:104:0.221:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161680258	rs6427618	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,76:32:170:0.447:2	0/1:49,48:32:97:0.495:2	0/1:0,23:32:23:1.00:2	0/1:87,105:31:192:0.547:2	0/1:111,76:31:187:0.406:2	0/1:106,81:31:187:0.433:2	0/1:115,76:31:192:0.398:2	0/1:113,80:32:193:0.415:2	0/1:0,182:33:182:1.00:2	0/1:1,181:32:182:0.995:2	0/1:89,66:31:155:0.426:2
chr1	161681780	rs2275603	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,38:32:83:0.458:2	0/1:14,16:31:30:0.533:2	./.	0/1:29,24:30:53:0.453:2	./.	0/1:31,20:31:51:0.392:2	0/1:39,19:32:58:0.328:2	./.	./.	./.	0/1:33,40:32:73:0.548:2
chr1	161682975	rs6688140	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.	./.	./.	./.
chr1	161683136	rs11746	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,21:33:52:0.404:2	0/1:12,16:32:28:0.571:2	0/1:3,3:34:6:0.500:2	0/1:74,37:33:111:0.333:2	./.	0/1:42,31:32:73:0.425:2	./.	0/1:0,65:33:65:1.00:2	0/1:1,65:34:66:0.985:2	0/1:0,40:33:40:1.00:2	./.
chr1	161695639	rs7520519	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,150:31:151:0.993:2	0/1:0,95:32:95:1.00:2	0/1:0,28:32:28:1.00:2	0/1:2,170:31:172:0.988:2	0/1:84,80:32:164:0.488:2	0/1:2,177:31:179:0.989:2	0/1:0,163:32:163:1.00:2	0/1:0,167:31:167:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,158:32:158:1.00:2	0/1:96,80:30:176:0.455:2
chr1	161696782	rs11585450	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,4:25:5:0.800:2	0/1:4,5:30:9:0.556:2	./.	0/1:7,3:30:10:0.300:2	./.	0/1:3,3:29:6:0.500:2	0/1:2,3:23:5:0.600:2	0/1:1,6:28:7:0.857:2	./.	0/1:0,13:29:13:1.00:2	./.
chr1	161697072	rs72704099	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,20:33:51:0.392:2	./.	0/1:46,24:32:70:0.343:2	./.	./.	./.	./.	./.
chr1	161697149	rs16858529	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.	./.	./.	./.	./.
chr1	161697319	rs34868416	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.
chr1	161721707	rs1063178	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,70:32:192:0.365:2	0/1:62,64:32:126:0.508:2	./.	0/1:0,158:32:158:1.00:2	./.	0/1:99,79:31:178:0.444:2	./.	./.	0/1:104,94:33:198:0.475:2	0/1:97,93:32:190:0.489:2	./.
chr1	161722204	rs1063179	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,80:33:188:0.426:2
chr1	161722972	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.
chr1	161736197	rs112863172	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,34:30:56:0.607:2	./.
chr1	161751741	rs1058405	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,14:31:22:0.636:2	0/1:16,11:32:27:0.407:2	./.	0/1:0,40:32:40:1.00:2	./.	./.	./.	./.	./.	0/1:18,20:33:38:0.526:2	0/1:32,19:32:51:0.373:2
chr1	161928327	rs9482	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,61:30:63:0.968:2	0/1:0,63:30:63:1.00:2	0/1:0,13:30:14:1.00:2	0/1:0,105:30:105:1.00:2	0/1:1,97:30:98:0.990:2	0/1:70,64:30:134:0.478:2	0/1:0,70:29:71:1.00:2	0/1:1,92:29:94:0.989:2	0/1:0,104:30:104:1.00:2	0/1:0,79:29:79:1.00:2	0/1:1,107:30:108:0.991:2
chr1	161967681	rs2499836	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,50:29:106:0.472:2	0/1:34,32:29:66:0.485:2	0/1:0,13:29:13:1.00:2	0/1:2,115:30:117:0.983:2	0/1:91,62:28:155:0.405:2	0/1:71,79:30:151:0.527:2	0/1:1,132:29:133:0.992:2	0/1:83,76:28:159:0.478:2	0/1:72,64:29:136:0.471:2	0/1:85,49:29:134:0.366:2	0/1:0,120:28:120:1.00:2
chr1	161976234	rs12022536	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,41:30:41:1.00:2	./.	0/1:0,80:30:81:1.00:2	0/1:36,28:30:64:0.438:2	0/1:0,72:30:72:1.00:2	0/1:0,62:30:62:1.00:2	0/1:3,58:30:61:0.951:2	0/1:48,38:30:86:0.442:2	0/1:0,61:30:61:1.00:2	0/1:0,87:30:87:1.00:2
chr1	161993192	rs12130792	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,46:32:111:0.414:2	./.	./.	./.	./.
chr1	162302875	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr1	162313735	rs3751284	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,76:31:197:0.388:2	./.	./.	0/1:95,99:31:194:0.510:2	0/1:102,89:31:192:0.466:2
chr1	162335256	rs348624	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,28:30:63:0.444:2	0/1:29,17:31:46:0.370:2	./.	./.	./.	./.	0/1:50,78:31:128:0.609:2	./.	0/1:51,36:31:87:0.414:2	./.	./.
chr1	162343861	rs142892903	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:32:104:0.452:2	./.	./.	./.	./.
chr1	162344069	rs13823	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:32:100:0.510:2	./.	./.
chr1	162344102	rs2282397	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,42:31:103:0.408:2	./.	./.	0/1:60,68:31:128:0.531:2	0/1:1,147:31:149:0.993:2	./.	0/1:31,42:31:73:0.575:2	0/1:40,71:31:111:0.640:2
chr1	162344390	rs164159	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:37:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,54:30:54:1.00:2
chr1	162345091	rs164181	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,124:32:124:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,152:31:152:1.00:2	0/1:0,163:31:163:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,170:31:170:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,121:32:121:1.00:2	0/1:2,156:31:158:0.987:2
chr1	162353130	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.
chr1	162367071	rs17852003	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,33:30:68:0.485:2	0/1:23,10:32:33:0.303:2	./.	./.	./.	0/1:50,56:30:106:0.528:2	0/1:47,45:31:92:0.489:2	0/1:52,61:30:113:0.540:2	./.	0/1:42,21:31:63:0.333:2	0/1:31,38:30:69:0.551:2
chr1	162367103	rs34001279	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:32:79:0.443:2	./.	./.	./.	./.	./.	./.	0/1:28,22:32:50:0.440:2
chr1	162546635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.	./.	./.
chr1	162560209	rs61743694	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.
chr1	162562526	rs41271989	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,86:31:187:0.460:2
chr1	162569103	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.
chr1	162569150	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.
chr1	162569157	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	./.	./.
chr1	162737116	rs2298258	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,50:32:124:0.403:2	0/1:35,35:32:70:0.500:2	./.	./.	0/1:66,67:32:133:0.504:2	./.	0/1:84,50:32:134:0.373:2	./.	./.	0/1:75,41:32:116:0.353:2	./.
chr1	162740313	rs77385055	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,59:28:171:0.345:2	0/1:53,47:29:100:0.470:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	162740327	rs1780003	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,161:29:162:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,178:29:179:1.00:2	0/1:0,172:29:172:1.00:2	0/1:0,183:29:183:1.00:2	0/1:1,186:30:187:0.995:2	0/1:0,174:29:174:1.00:2	0/1:0,183:31:183:1.00:2	0/1:0,177:29:177:1.00:2	0/1:1,167:29:171:0.994:2
chr1	162760565	rs12118590	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,73:31:185:0.395:2	./.	./.	./.	0/1:98,85:32:183:0.464:2	./.	./.
chr1	162760622	rs116929795	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,69:32:181:0.381:2	0/1:106,57:31:164:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	162774072	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:31:186:0.027:2	./.	./.	./.	./.
chr1	162775267	rs12563263	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:81,37:32:118:0.314:2	0/1:51,27:31:78:0.346:2	0/1:14,7:31:21:0.333:2	./.	./.	0/1:71,39:29:110:0.355:2	0/1:69,38:31:107:0.355:2	0/1:7,101:31:108:0.935:2	./.	0/1:55,35:31:90:0.389:2	./.
chr1	162775270	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.
chr1	162782145	rs2684875	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,66:34:149:0.443:2	./.	./.	0/1:76,64:33:140:0.457:2	./.	./.	./.	./.
chr1	162782178	rs201944635	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:98,17:33:115:0.148:2	0/1:72,12:33:84:0.143:2	./.	0/1:76,12:33:88:0.136:2	./.	0/1:106,10:31:116:0.086:2	0/1:72,16:33:89:0.182:2	0/1:54,15:34:69:0.217:2	0/1:82,30:34:112:0.268:2	0/1:72,32:33:104:0.308:2	0/1:135,12:32:147:0.082:2
chr1	162824553	rs78851184	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,12:32:25:0.480:2	./.	./.	./.	0/1:0,36:33:36:1.00:2	./.	./.
chr1	162824864	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,98:32:196:0.500:2
chr1	162825457	rs77227460	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:31:29:0.379:2	./.	0/1:97,41:31:138:0.297:2	./.	./.	./.	0/1:3,185:32:189:0.984:2	./.	./.
chr1	163122437	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.
chr1	163122448	rs200762280	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:33:16:0.500:2	./.	./.	./.	./.
chr1	163172574	rs2292270	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,46:33:120:0.383:2	0/1:1,62:33:63:0.984:2	./.	./.	0/1:63,51:33:114:0.447:2	./.	0/1:35,53:33:88:0.602:2	./.
chr1	163297322	rs16852612	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,64:33:117:0.547:2	./.	0/1:50,48:33:98:0.490:2	./.
chr1	163309219	rs1509022	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,36:30:77:0.468:2	0/1:26,16:31:42:0.381:2	./.	0/1:34,34:30:68:0.500:2	0/1:0,53:30:53:1.00:2	0/1:1,52:30:53:0.981:2	0/1:22,34:30:56:0.607:2	0/1:41,32:31:73:0.438:2	0/1:0,75:31:75:1.00:2	0/1:40,32:31:72:0.444:2	0/1:0,112:31:113:1.00:2
chr1	163313539	rs11802875	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,8:32:42:0.190:2	./.	0/1:24,28:32:52:0.538:2	./.
chr1	164529120	rs2275558	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:6,19:31:25:0.760:2	0/1:5,3:31:8:0.375:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,25:31:25:1.00:2	./.	./.	0/1:17,24:32:41:0.585:2	./.	./.	./.
chr1	165173216	rs1354509	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,95:32:95:1.00:2	0/1:2,103:33:105:0.981:2	0/1:0,94:32:95:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,100:32:100:1.00:2
chr1	165218679	rs9970062	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,60:29:105:0.571:2	0/1:32,28:30:60:0.467:2	0/1:0,3:26:3:1.00:2	0/1:64,60:30:124:0.484:2	./.	0/1:49,60:29:109:0.550:2	0/1:74,66:29:140:0.471:2	./.	0/1:1,146:30:147:0.993:2	0/1:40,49:30:89:0.551:2	./.
chr1	165218792	rs10753668	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,59:31:93:0.634:2	./.	./.	./.	./.	./.	0/1:54,42:32:96:0.438:2
chr1	165377552	rs2134095	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:31:57:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,57:30:57:1.00:2	0/1:1,59:30:60:0.983:2	0/1:0,58:30:58:1.00:2	0/1:1,79:30:80:0.988:2	0/1:36,22:31:58:0.379:2	0/1:0,52:31:52:1.00:2	0/1:0,91:31:91:1.00:2
chr1	165389129	rs1128977	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,35:31:59:0.593:2	./.	0/1:0,48:31:48:1.00:2	0/1:1,64:31:65:0.985:2	./.	0/1:40,20:32:60:0.333:2	0/1:0,55:31:55:1.00:2	0/1:0,74:32:74:1.00:2
chr1	165397966	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,26:32:41:0.634:2	./.	./.	./.	./.	./.
chr1	165398115	rs113471	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,27:29:58:0.466:2	0/1:20,24:29:44:0.545:2	./.	0/1:58,53:30:111:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr1	165532746	rs17407838	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,61:32:61:1.00:2	./.	./.
chr1	165533005	rs453717	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,22:31:47:0.468:2	0/1:8,15:32:23:0.652:2	0/1:6,7:32:13:0.538:2	./.	0/1:33,31:30:64:0.484:2	0/1:40,42:32:82:0.512:2	./.	./.	./.	./.	0/1:40,30:32:70:0.429:2
chr1	165533009	rs114914708	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:34:85:0.047:2	./.	./.	./.	./.	./.
chr1	165601466	rs9333378	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:31:30:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,59:31:59:1.00:2	0/1:34,8:31:42:0.190:2	0/1:30,45:31:75:0.600:2	0/1:0,41:31:41:1.00:2	0/1:0,54:30:54:1.00:2	./.	0/1:0,50:32:50:1.00:2	0/1:0,53:32:53:1.00:2
chr1	165630698	rs6667681	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,44:32:74:0.595:2	0/1:30,32:32:62:0.516:2	0/1:10,6:32:16:0.375:2	0/1:47,56:32:103:0.544:2	0/1:19,28:31:47:0.596:2	0/1:49,39:31:88:0.443:2	0/1:2,65:31:67:0.970:2	0/1:48,58:30:107:0.547:2	0/1:0,66:32:66:1.00:2	0/1:0,69:32:69:1.00:2	0/1:56,45:31:101:0.446:2
chr1	165648710	rs1143660	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,55:31:113:0.487:2	0/1:40,28:32:68:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	165652273	rs1143659	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:29:11:1.00:2	0/1:36,35:30:71:0.493:2	0/1:0,98:30:98:1.00:2	0/1:0,80:30:80:1.00:2	./.	0/1:0,108:30:108:1.00:2	0/1:26,29:31:55:0.527:2	0/1:21,40:30:61:0.656:2	0/1:0,54:29:54:1.00:2
chr1	165667781	rs12408101	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:29:35:0.429:2	0/1:17,7:27:25:0.292:2	0/1:13,14:30:27:0.519:2	./.	0/1:1,32:29:33:0.970:2	0/1:14,10:29:24:0.417:2	./.	0/1:8,7:30:15:0.467:2
chr1	165721418	rs145104339	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,48:32:127:0.378:2	./.	./.	./.	./.	./.
chr1	165865478	rs11553301	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:31:18:0.722:2	./.	0/1:83,58:31:141:0.411:2	./.	0/1:64,58:31:122:0.475:2	0/1:62,80:32:142:0.563:2	0/1:67,50:32:117:0.427:2	./.	./.
chr1	166039898	rs41269662	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,33:31:68:0.485:2	0/1:60,38:31:98:0.388:2	./.	./.	./.	./.	0/1:21,31:32:52:0.596:2
chr1	166818566	rs2075946	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	0/1:10,8:28:18:0.444:2	./.	0/1:18,4:30:22:0.182:2	./.	./.
chr1	166818839	rs143063474	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:31:45:0.578:2	./.	./.	./.	./.	./.
chr1	166905927	rs33958744	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:83,59:32:142:0.415:2	0/1:40,41:33:81:0.506:2	0/1:14,16:32:31:0.533:2	./.	./.	./.	0/1:108,88:32:196:0.449:2	./.	./.	./.	0/1:86,52:31:139:0.377:2
chr1	166908811	rs41269698	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,48:31:113:0.425:2	./.	./.	./.	./.
chr1	166958601	rs2296837	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,23:32:38:0.605:2	0/1:15,16:32:31:0.516:2	0/1:4,3:33:7:0.429:2	./.	./.	./.	0/1:54,47:32:101:0.465:2	0/1:56,36:32:92:0.391:2	0/1:34,18:33:52:0.346:2	./.	0/1:25,14:31:39:0.359:2
chr1	166958710	rs11578336	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,15:31:30:0.500:2	0/1:10,10:30:20:0.500:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	0/1:37,26:31:63:0.413:2	0/1:50,24:26:74:0.324:2	0/1:18,19:30:37:0.514:2	./.	0/1:16,8:32:24:0.333:2
chr1	166963234	rs3736988	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,14:32:32:0.438:2	0/1:18,8:32:26:0.308:2	./.	0/1:25,15:32:40:0.375:2	0/1:8,11:32:19:0.579:2	0/1:0,24:32:24:1.00:2	./.	0/1:23,19:32:42:0.452:2	0/1:0,34:34:34:1.00:2	0/1:10,21:33:31:0.677:2	0/1:23,24:34:47:0.511:2
chr1	167059462	rs2281963	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,28:32:51:0.549:2	0/1:15,15:32:30:0.500:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,72:32:72:1.00:2	0/1:0,53:32:53:1.00:2	./.	0/1:50,39:32:89:0.438:2	0/1:43,23:32:66:0.348:2	0/1:0,56:31:57:1.00:2	./.
chr1	167086718	rs149732757	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:33:71:0.437:2	0/1:20,21:33:41:0.512:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	167095163	rs267745	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,19:29:43:0.442:2	0/1:16,15:28:31:0.484:2	./.	0/1:0,66:29:66:1.00:2	0/1:32,29:30:61:0.475:2	0/1:27,17:29:44:0.386:2	./.	0/1:30,31:28:61:0.508:2	0/1:0,55:29:55:1.00:2	0/1:31,21:30:52:0.404:2	0/1:1,52:29:53:0.981:2
chr1	167095765	rs6668826	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,32:29:61:0.525:2	./.	0/1:30,46:31:76:0.605:2	./.	./.	./.
chr1	167095881	rs3795605	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,69:30:151:0.457:2	./.	0/1:73,96:30:169:0.568:2	./.	./.	./.
chr1	167096005	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.
chr1	167096640	rs201795536	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,55:31:92:0.598:2	./.
chr1	167096931	rs267746	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,76:32:80:0.950:2	./.	./.	./.	./.	./.	./.	./.
chr1	167096997	rs113448705	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,15:31:33:0.455:2	./.	./.	./.	./.	./.	./.
chr1	167097567	rs61748784	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,24:31:40:0.600:2	0/1:19,13:32:32:0.406:2	./.	./.	0/1:14,12:31:26:0.462:2	./.	./.	./.	0/1:0,42:31:42:1.00:2	0/1:13,13:32:26:0.500:2	0/1:0,39:32:39:1.00:2
chr1	167097739	rs2281959	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,11:32:23:0.478:2	0/1:6,3:31:9:0.333:2	./.	./.	0/1:20,18:30:38:0.474:2	0/1:28,13:31:41:0.317:2	./.	0/1:7,13:31:20:0.650:2	0/1:0,24:31:24:1.00:2	0/1:14,11:31:25:0.440:2	0/1:0,28:31:28:1.00:2
chr1	167403317	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.
chr1	167408565	rs12141641	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,69:32:166:0.416:2	0/1:75,56:32:131:0.427:2	./.	./.	./.
chr1	167654664	rs374085828	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	167663476	rs7554805	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,36:29:94:0.383:2	./.	./.	./.	./.	0/1:32,39:31:71:0.549:2	./.
chr1	167779008	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:34:156:0.026:2	./.
chr1	167802344	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.
chr1	167817639	rs203795	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,36:29:62:0.581:2	0/1:29,19:28:48:0.396:2	./.	0/1:34,61:30:95:0.642:2	0/1:1,61:29:62:0.984:2	0/1:0,72:29:72:1.00:2	0/1:41,47:30:88:0.534:2	0/1:0,74:29:74:1.00:2	./.	0/1:0,81:29:81:1.00:2	0/1:0,102:30:102:1.00:2
chr1	167825485	rs2071921	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,75:29:191:0.393:2	0/1:91,84:29:175:0.480:2	0/1:1,168:30:169:0.994:2	0/1:93,88:29:181:0.486:2	./.	./.	0/1:88,89:29:177:0.503:2	./.
chr1	167825606	rs2071922	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.	./.	./.	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	./.
chr1	167839578	rs67878347	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,31:32:71:0.437:2	0/1:28,23:32:51:0.451:2	./.	0/1:51,21:32:72:0.292:2	0/1:30,15:30:45:0.333:2	0/1:0,53:30:53:1.00:2	./.	./.	./.	0/1:42,37:31:79:0.468:2	./.
chr1	167849414	rs203849	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,32:31:84:0.381:2	0/1:14,27:31:41:0.659:2	./.	0/1:3,83:31:86:0.965:2	0/1:53,47:31:100:0.470:2	0/1:0,107:30:107:1.00:2	./.	./.	0/1:71,57:31:128:0.445:2	0/1:4,85:30:89:0.955:2	./.
chr1	167865871	rs16859886	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:31:49:0.571:2	0/1:17,12:30:29:0.414:2	./.
chr1	167871060	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2	./.
chr1	167893759	rs9618	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,14:32:30:0.467:2	0/1:17,5:32:22:0.227:2	./.	./.	./.	0/1:21,6:31:27:0.222:2	./.	./.	0/1:17,10:33:27:0.370:2	0/1:18,10:29:28:0.357:2	./.
chr1	167906239	rs203788	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,11:30:11:1.00:2	./.	0/1:0,29:30:29:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,14:30:14:1.00:2
chr1	167935947	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	0/1:129,4:34:133:0.030:2	./.	./.	./.	./.	./.
chr1	167973874	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	167973976	rs1060041	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,40:31:86:0.465:2	0/1:22,25:31:47:0.532:2	./.	./.	./.	0/1:63,55:30:118:0.466:2	./.	./.	./.	./.	./.
chr1	168013850	rs11558511	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,43:30:81:0.531:2	0/1:1,34:31:35:0.971:2	0/1:34,45:30:79:0.570:2	0/1:33,34:29:67:0.507:2	0/1:50,40:30:90:0.444:2	./.	0/1:34,35:30:69:0.507:2	0/1:1,75:31:76:0.987:2
chr1	168014204	rs41271647	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,68:32:158:0.430:2	0/1:67,69:32:136:0.507:2	0/1:5,3:31:8:0.375:2	0/1:72,64:31:136:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr1	168044653	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.
chr1	168054770	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	168059866	rs275149	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,14:27:43:0.359:2	0/1:21,14:29:35:0.400:2	./.	./.	./.	./.	./.	./.	0/1:0,36:26:40:1.00:2	./.	./.
chr1	168065944	rs372585493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:29:32:0.500:2	./.	./.	./.
chr1	168153195	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:34:183:0.022:2
chr1	168195312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.
chr1	168266901	rs78189582	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,61:33:148:0.412:2	./.	./.
chr1	168510202	rs149372418	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2
chr1	168511281	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,88:33:169:0.521:2
chr1	168511284	rs4282797	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:28:19:0.263:2	./.	./.	./.	./.	0/1:106,24:26:130:0.185:2	0/1:122,32:29:154:0.208:2	0/1:93,24:29:117:0.205:2	./.
chr1	168511321	rs4501820	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,27:31:73:0.370:2	./.	0/1:62,5:32:67:0.075:2	0/1:66,4:29:70:0.057:2	0/1:0,24:32:24:1.00:2	./.
chr1	168511325	rs4301615	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,24:32:69:0.348:2	./.	./.	0/1:61,4:32:65:0.062:2	0/1:0,24:33:24:1.00:2	./.
chr1	168513129	rs3820405	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.	./.	./.	0/1:134,7:31:141:0.050:2	0/1:100,82:31:182:0.451:2	0/1:92,71:32:163:0.436:2	0/1:78,65:32:143:0.455:2	./.
chr1	168513214	rs3820406	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:33:37:0.081:2	0/1:17,3:32:20:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,8:31:59:0.136:2
chr1	168545864	rs116453184	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,43:28:94:0.457:2	0/1:45,17:26:62:0.274:2	0/1:46,44:28:90:0.489:2	./.	./.	0/1:29,23:29:52:0.442:2	./.
chr1	168545949	rs34933908	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,76:31:112:0.679:2	0/1:25,45:32:70:0.643:2	0/1:13,6:31:19:0.316:2	0/1:4,133:31:137:0.971:2	0/1:57,99:31:156:0.635:2	0/1:85,50:31:135:0.370:2	0/1:50,127:31:177:0.718:2	0/1:82,81:31:163:0.497:2	0/1:67,52:32:120:0.437:2	0/1:3,89:32:92:0.967:2	0/1:54,72:31:126:0.571:2
chr1	168549362	rs149760054	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,28:32:197:0.142:2	./.	./.	./.	0/1:168,27:33:196:0.138:2	./.
chr1	168698173	rs1052591	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:101,91:30:192:0.474:2	0/1:73,52:31:125:0.416:2	0/1:1,23:31:24:0.958:2	./.	0/1:128,68:30:196:0.347:2	0/1:1,180:31:181:0.994:2	0/1:116,71:31:187:0.380:2	0/1:97,87:31:184:0.473:2	0/1:3,183:31:186:0.984:2	0/1:105,85:31:191:0.447:2	0/1:1,171:31:173:0.994:2
chr1	169272451	rs10800427	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,54:31:54:1.00:2	0/1:1,24:32:25:0.960:2	0/1:0,42:32:42:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,71:32:71:1.00:2
chr1	169272453	rs10800428	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,71:32:71:1.00:2
chr1	169293721	rs1140523	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,8:31:28:0.286:2	./.	./.	0/1:0,20:31:20:1.00:2	0/1:21,17:31:38:0.447:2	0/1:23,5:32:28:0.179:2	./.	0/1:0,23:31:23:1.00:2
chr1	169336983	rs201280194	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:32:48:0.375:2	./.	./.	./.
chr1	169346081	rs142091756	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:33:24:0.375:2	./.
chr1	169390957	rs35107735	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,55:31:100:0.556:2	0/1:32,17:31:49:0.347:2	./.	0/1:62,52:31:115:0.456:2	./.	./.	0/1:37,39:31:76:0.513:2	./.	0/1:53,64:32:117:0.547:2	0/1:36,31:32:67:0.463:2	0/1:0,116:32:116:1.00:2
chr1	169391037	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,7:30:187:0.037:2
chr1	169391038	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:28:187:0.043:2
chr1	169391154	rs3820059	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,30:34:31:1.00:2	0/1:0,21:33:21:1.00:2	./.	0/1:19,20:32:39:0.513:2	./.	./.	0/1:0,29:33:29:1.00:2	0/1:2,48:33:50:0.960:2	0/1:8,23:34:31:0.742:2	0/1:0,28:33:28:1.00:2	0/1:0,64:34:64:1.00:2
chr1	169483561	rs6027	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:32:14:0.643:2	0/1:6,8:32:14:0.571:2	./.	./.	./.
chr1	169498975	rs6030	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:32:13:0.692:2	0/1:0,98:33:98:1.00:2	0/1:29,31:32:60:0.517:2	0/1:65,39:33:104:0.375:2	0/1:46,29:32:75:0.387:2	0/1:49,51:33:100:0.510:2	0/1:62,52:34:114:0.456:2	./.	./.
chr1	169510139	rs13306334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.	./.
chr1	169510233	rs9332607	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:99,87:31:186:0.468:2	0/1:70,51:30:122:0.421:2	0/1:11,11:29:22:0.500:2	./.	./.	0/1:100,71:30:171:0.415:2	./.	./.	0/1:94,83:31:178:0.469:2	0/1:4,149:31:153:0.974:2	0/1:4,162:31:167:0.976:2
chr1	169510246	rs200676405	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,4:32:181:0.022:2	0/1:128,4:32:132:0.030:2	./.	./.	./.	0/1:178,5:32:183:0.027:2	./.	./.	./.	./.	./.
chr1	169510293	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,6:26:180:0.034:2	./.	0/1:181,7:30:188:0.037:2	./.	./.	./.	./.	./.
chr1	169510328	rs147741798	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	169510348	rs1800595	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,77:29:155:0.497:2	0/1:106,70:29:176:0.398:2	./.	./.	./.
chr1	169510354	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.	./.
chr1	169510367	rs112331368	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,10:31:163:0.061:2	0/1:144,5:32:149:0.034:2	0/1:164,8:29:173:0.047:2	0/1:164,8:29:172:0.047:2	./.	0/1:172,8:33:180:0.044:2	./.	./.
chr1	169510380	rs9287090	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,9:31:26:0.346:2	0/1:14,140:30:154:0.909:2	0/1:94,39:31:133:0.293:2	0/1:90,85:30:176:0.486:2	./.	./.	0/1:100,77:32:177:0.435:2	./.	./.
chr1	169510475	rs1046712	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:117,73:32:190:0.384:2	0/1:66,39:32:105:0.371:2	./.	./.	0/1:76,43:30:119:0.361:2	./.	./.	0/1:104,82:31:186:0.441:2	./.	./.	./.
chr1	169510489	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:32:146:0.034:2	./.	./.	./.	./.
chr1	169510502	rs140018525	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,7:31:136:0.051:2	./.	0/1:144,4:32:148:0.027:2	0/1:182,7:32:189:0.037:2	0/1:179,9:28:188:0.048:2	./.	./.
chr1	169510524	rs1800594	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:109,7:29:116:0.060:2	0/1:12,10:31:22:0.455:2	0/1:3,175:32:178:0.983:2	0/1:56,76:31:132:0.576:2	0/1:93,81:31:176:0.466:2	0/1:81,64:32:146:0.441:2	0/1:98,85:32:183:0.464:2	0/1:88,93:33:182:0.514:2	./.	./.
chr1	169511403	rs41272457	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,43:33:92:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr1	169511555	rs6032	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:3,126:32:129:0.977:2	0/1:60,34:32:94:0.362:2	0/1:53,47:31:100:0.470:2	./.	./.	0/1:83,72:33:155:0.465:2	./.	./.
chr1	169511585	rs9332695	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,76:32:171:0.444:2
chr1	169511734	rs4525	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,27:29:38:0.711:2	0/1:2,181:29:183:0.989:2	0/1:91,91:28:183:0.500:2	0/1:88,96:28:184:0.522:2	./.	./.	0/1:110,82:30:192:0.427:2	./.	./.
chr1	169511755	rs4524	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,17:32:26:0.654:2	0/1:3,152:34:155:0.981:2	0/1:79,82:32:161:0.509:2	0/1:79,81:32:160:0.506:2	./.	./.	0/1:102,70:34:172:0.407:2	./.	./.
chr1	169511878	rs6018	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,61:32:125:0.488:2	0/1:76,79:32:155:0.510:2	./.	./.	./.
chr1	169512027	rs6021	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:2,97:29:99:0.980:2	0/1:25,35:29:60:0.583:2	0/1:44,29:29:73:0.397:2	./.	./.	0/1:50,42:31:92:0.457:2	./.	./.
chr1	169512039	rs6024	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,35:31:84:0.422:2	0/1:51,39:32:90:0.433:2	./.	./.	./.
chr1	169512093	rs6017	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:31:18:0.444:2	0/1:0,144:32:144:1.00:2	0/1:47,52:31:99:0.525:2	0/1:61,43:33:104:0.413:2	./.	./.	0/1:62,47:33:109:0.431:2	./.	./.
chr1	169512120	rs6016	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:30:23:0.435:2	0/1:0,134:30:134:1.00:2	0/1:63,55:30:118:0.466:2	0/1:65,51:30:116:0.440:2	./.	./.	0/1:61,66:32:127:0.520:2	./.	./.
chr1	169513583	rs6037	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,54:30:112:0.482:2	./.	0/1:72,28:29:100:0.280:2	./.	./.
chr1	169515726	rs6036	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,55:33:128:0.430:2	./.	0/1:75,45:32:120:0.375:2	./.	./.
chr1	169519049	rs6025	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,8:31:8:1.00:2	0/1:1,83:31:84:0.988:2	0/1:0,62:31:62:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,102:31:102:1.00:2
chr1	169519894	rs6015	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:32:23:0.217:2	./.	0/1:18,9:32:27:0.333:2	./.	./.
chr1	169521849	rs6035	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,89:32:167:0.533:2	./.	./.	./.	./.	./.	./.
chr1	169521853	rs6033	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,71:29:166:0.428:2	./.	0/1:94,97:30:191:0.508:2	./.	./.
chr1	169529826	rs6022	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,38:32:66:0.585:2	0/1:24,26:32:50:0.520:2	./.	./.	./.	0/1:43,42:32:85:0.494:2	0/1:40,43:32:83:0.518:2	./.	./.	0/1:29,28:32:57:0.491:2	./.
chr1	169529973	rs6029	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,42:33:77:0.545:2	0/1:28,24:32:52:0.462:2	./.	./.	./.	0/1:60,54:32:114:0.474:2	0/1:60,48:33:108:0.444:2	./.	./.	0/1:56,39:33:95:0.411:2	./.
chr1	169541513	rs6019	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.
chr1	169551682	rs6028	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,18:33:73:0.247:2	./.	0/1:45,31:32:76:0.408:2	0/1:20,8:33:28:0.286:2	0/1:0,34:33:34:1.00:2	0/1:49,27:33:76:0.355:2	0/1:51,21:32:72:0.292:2	./.
chr1	169562904	rs6128	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,54:32:54:1.00:2	0/1:1,16:32:17:0.941:2	./.	./.	./.	./.	0/1:45,27:32:72:0.375:2	./.	./.	./.	./.
chr1	169565284	rs3917813	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,54:33:151:0.358:2	./.
chr1	169565346	rs6133	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,49:31:94:0.521:2	0/1:30,27:31:57:0.474:2	./.	./.	./.	./.	0/1:57,41:30:98:0.418:2	./.	./.	0/1:65,41:31:106:0.387:2	./.
chr1	169566242	rs3917805	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,24:29:77:0.312:2	./.
chr1	169566308	rs6132	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,31:32:84:0.369:2	0/1:30,17:31:47:0.362:2	./.	./.	./.	./.	0/1:49,33:32:82:0.402:2	./.	./.	0/1:45,31:31:76:0.408:2	./.
chr1	169566313	rs6127	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,47:31:47:1.00:2	./.	0/1:64,63:30:127:0.496:2	./.	0/1:0,93:30:93:1.00:2	0/1:1,80:30:81:0.988:2	0/1:1,164:30:165:0.994:2	0/1:70,43:31:113:0.381:2	0/1:0,76:30:76:1.00:2	0/1:82,69:30:151:0.457:2
chr1	169566326	rs6135	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,26:32:73:0.356:2	0/1:28,20:29:48:0.417:2	./.	./.	./.	./.	0/1:58,35:32:93:0.376:2	./.	./.	0/1:43,29:31:72:0.403:2	./.
chr1	169580885	rs6131	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,27:31:71:0.380:2	./.	0/1:1,89:31:90:0.989:2	./.	./.	./.
chr1	169582317	rs6125	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.	./.	./.
chr1	169599263	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,51:31:111:0.459:2	0/1:34,25:32:59:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	169660939	rs4987382	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	169673838	rs2229569	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:32:48:0.500:2	0/1:35,27:34:62:0.435:2	./.	./.
chr1	169676486	rs1131498	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,122:32:126:0.968:2	./.	./.	./.	./.	0/1:78,77:33:155:0.497:2	0/1:58,38:33:96:0.396:2	./.
chr1	169677709	rs1051091	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,68:32:126:0.540:2	./.	0/1:1,159:32:160:0.994:2	0/1:64,76:33:140:0.543:2	./.	./.
chr1	169694918	rs5356	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,60:30:111:0.541:2	./.	./.	./.
chr1	169695870	rs5355	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,55:30:109:0.505:2	./.	./.
chr1	169696946	rs5368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,70:31:156:0.449:2	./.	./.	./.
chr1	169698670	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:30:136:0.029:2	./.	./.	./.
chr1	169698789	rs5363	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,27:32:64:0.422:2	./.	0/1:32,36:32:68:0.529:2	./.	./.	./.
chr1	169701060	rs5361	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,77:29:162:0.475:2	./.	0/1:125,69:30:194:0.356:2	./.	./.	./.
chr1	169701901	rs1800016	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,50:32:117:0.427:2	./.	0/1:86,48:32:134:0.358:2	./.	./.	./.
chr1	169701904	rs1800015	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,50:29:118:0.424:2	./.	0/1:86,48:30:134:0.358:2	./.	./.	./.
chr1	169702705	rs932307	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:30:39:0.538:2	./.	0/1:0,33:32:33:1.00:2	0/1:40,31:33:71:0.437:2	./.	./.
chr1	169702772	rs1805193	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:30:35:0.343:2	./.	0/1:31,8:31:39:0.205:2	./.	./.	./.
chr1	169762807	rs10489177	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,71:30:71:1.00:2	0/1:0,28:29:28:1.00:2	0/1:2,4:30:6:0.667:2	./.	0/1:32,16:29:48:0.333:2	./.	0/1:20,19:28:39:0.487:2	./.	./.	0/1:23,19:29:42:0.452:2	0/1:42,46:28:88:0.523:2
chr1	169762996	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2
chr1	169773317	rs11590604	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,39:30:110:0.355:2	./.	./.	./.
chr1	169799880	rs2272920	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,55:31:115:0.478:2	0/1:88,57:31:145:0.393:2	./.	0/1:88,70:32:158:0.443:2	./.	./.	./.
chr1	169823660	rs1062976	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,71:28:71:1.00:2	./.	./.	./.	./.	0/1:38,35:30:73:0.479:2	0/1:24,37:27:61:0.607:2	0/1:46,32:29:78:0.410:2
chr1	169823718	rs4656197	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:28:42:0.976:2	0/1:0,32:28:32:1.00:2	0/1:4,6:29:10:0.600:2	0/1:0,44:29:44:1.00:2	0/1:16,21:29:37:0.568:2	./.	0/1:21,11:29:32:0.344:2	0/1:20,21:29:41:0.512:2	0/1:0,28:30:28:1.00:2	0/1:0,27:29:27:1.00:2	0/1:24,15:29:39:0.385:2
chr1	169823790	rs12143301	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,13:29:37:0.351:2	0/1:17,4:32:21:0.190:2	./.	0/1:26,23:29:49:0.469:2	./.	./.	./.
chr1	169823959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.
chr1	169824068	rs12132384	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,15:30:32:0.469:2	0/1:11,6:31:17:0.353:2	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.
chr1	169824104	rs12135726	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,10:26:18:0.556:2	0/1:2,3:27:5:0.600:2	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.
chr1	169828327	rs17602701	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,58:31:124:0.468:2	0/1:60,57:31:117:0.487:2	./.	0/1:75,56:31:131:0.427:2	./.	./.	./.
chr1	169923162	rs182996592	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.	./.	./.
chr1	169951997	rs33943686	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	./.	./.	0/1:32,29:32:61:0.475:2
chr1	170135669	rs6427234	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,30:32:52:0.577:2	0/1:32,10:32:42:0.238:2	0/1:6,4:32:10:0.400:2	0/1:43,30:30:73:0.411:2	0/1:1,39:30:40:0.975:2	0/1:34,19:31:53:0.358:2	0/1:38,29:30:67:0.433:2	./.	./.	./.	./.
chr1	170135693	rs41272485	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,37:33:80:0.463:2	0/1:46,35:32:81:0.432:2	./.	./.	./.	./.	./.
chr1	170135760	rs6427235	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,45:31:105:0.429:2	0/1:44,32:32:76:0.421:2	0/1:8,9:31:17:0.529:2	0/1:63,78:32:141:0.553:2	0/1:1,115:31:116:0.991:2	0/1:85,73:32:158:0.462:2	0/1:85,63:32:148:0.426:2	./.	./.	./.	./.
chr1	170135765	rs6669514	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,49:32:111:0.441:2	0/1:45,33:33:78:0.423:2	0/1:9,9:32:18:0.500:2	0/1:63,77:32:140:0.550:2	0/1:51,67:32:118:0.568:2	./.	0/1:81,67:33:148:0.453:2	./.	./.	./.	./.
chr1	170135828	rs41272487	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,68:29:168:0.405:2	./.	0/1:93,66:30:159:0.415:2	./.
chr1	170136787	rs12075997	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:30:103:0.505:2	./.	0/1:36,30:30:66:0.455:2	./.
chr1	170136876	rs144066772	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,37:30:89:0.416:2	./.	./.
chr1	170501385	rs7531125	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,39:32:40:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,45:32:46:1.00:2
chr1	170521376	rs913257	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,44:32:85:0.518:2	0/1:30,39:32:69:0.565:2	./.	./.	0/1:1,90:32:91:0.989:2	./.	0/1:44,39:32:83:0.470:2	0/1:39,54:32:93:0.581:2	0/1:51,44:32:95:0.463:2	0/1:44,34:31:78:0.436:2	0/1:48,58:32:107:0.547:2
chr1	170633448	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.
chr1	170916646	rs4656817	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,82:32:82:1.00:2	./.	./.	./.	./.	./.	./.	0/1:2,125:32:127:0.984:2
chr1	170927615	rs17563089	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:83,58:33:141:0.411:2	0/1:32,26:31:58:0.448:2	./.	0/1:99,73:33:172:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr1	170928671	rs2294740	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,48:33:84:0.578:2
chr1	170941014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.
chr1	170959029	rs16863922	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,26:32:82:0.317:2	0/1:28,28:32:56:0.500:2	0/1:3,4:31:7:0.571:2	0/1:74,41:31:115:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr1	170959088	rs28634500	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,41:31:97:0.423:2	0/1:40,20:31:60:0.333:2	0/1:10,9:30:19:0.474:2	0/1:84,57:30:141:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr1	170964534	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.
chr1	170965681	rs9427213	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:29:13:0.692:2	0/1:48,50:32:98:0.510:2	./.	./.	./.	./.	./.	./.	./.
chr1	170983334	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,35:31:60:0.583:2	./.	./.	./.	./.
chr1	170993566	rs17346397	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	0/1:68,57:32:125:0.456:2	0/1:102,77:33:179:0.430:2	./.	./.	./.
chr1	171076926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.
chr1	171076966	rs2266782	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,29:32:64:0.453:2	0/1:19,26:32:45:0.578:2	./.	0/1:2,79:32:81:0.975:2	0/1:41,41:31:82:0.500:2	./.	./.	./.	./.	0/1:0,72:31:72:1.00:2	./.
chr1	171083279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:35:137:0.029:2	./.	./.
chr1	171118708	rs41272513	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,78:29:174:0.448:2
chr1	171154959	rs2020870	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,50:31:103:0.485:2	./.	./.	./.	./.	./.	./.
chr1	171162583	rs2020860	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:33:26:0.538:2	./.	0/1:10,20:32:30:0.667:2	./.	./.	0/1:15,10:31:25:0.400:2	0/1:5,10:30:15:0.667:2	./.
chr1	171168497	rs140394156	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	0/1:57,44:31:101:0.436:2	./.	./.	./.
chr1	171168545	rs2307492	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,72:33:153:0.471:2	./.
chr1	171168584	rs2020862	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:108,56:32:164:0.341:2	0/1:53,34:32:87:0.391:2	./.	0/1:92,71:31:163:0.436:2	0/1:112,70:31:182:0.385:2	0/1:95,97:31:192:0.505:2	0/1:0,177:31:177:1.00:2	./.	0/1:120,68:32:188:0.362:2	0/1:103,89:32:192:0.464:2	./.
chr1	171168585	rs2020861	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:107,58:32:165:0.352:2	0/1:54,34:33:88:0.386:2	./.	0/1:92,71:33:163:0.436:2	0/1:112,70:32:182:0.385:2	0/1:93,99:32:192:0.516:2	0/1:1,176:32:177:0.994:2	./.	0/1:122,68:33:190:0.358:2	0/1:0,188:31:189:1.00:2	./.
chr1	171174531	rs2020863	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,36:33:88:0.409:2	0/1:23,24:31:47:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	171176912	rs2020865	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,26:33:71:0.366:2	./.	0/1:31,46:31:77:0.597:2	./.	./.	0/1:25,45:32:70:0.643:2	0/1:30,15:32:46:0.333:2	./.
chr1	171250044	rs742350	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:82,61:32:143:0.427:2	0/1:36,38:32:74:0.514:2	./.	./.	0/1:99,44:32:143:0.308:2	0/1:92,58:32:150:0.387:2	0/1:7,130:31:137:0.949:2	./.	./.	./.	./.
chr1	171252287	rs1126692	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:97,96:32:194:0.497:2	0/1:78,59:33:137:0.431:2	./.	./.	0/1:70,63:32:133:0.474:2	0/1:88,103:32:191:0.539:2	0/1:2,139:33:142:0.986:2	0/1:189,4:32:193:0.021:2	./.	./.	0/1:96,91:34:187:0.487:2
chr1	171252307	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.
chr1	171303690	rs1042767	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:33:54:0.481:2	./.
chr1	171483717	rs1055417	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	0/1:44,64:30:108:0.593:2	0/1:81,53:29:134:0.396:2	./.	./.	0/1:0,115:29:115:1.00:2
chr1	171483718	rs148272649	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,41:31:113:0.363:2	./.	./.	./.	./.
chr1	171486762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.	./.
chr1	171486912	rs10913157	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:31:80:0.488:2	./.	./.	./.	./.	./.
chr1	171505321	rs138220849	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,92:32:191:0.482:2	./.	./.	./.	./.	./.
chr1	171509327	rs760644	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:30:62:1.00:2	0/1:0,42:30:43:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,99:30:99:1.00:2	0/1:13,33:29:46:0.717:2	0/1:17,40:30:57:0.702:2	0/1:1,72:29:73:0.986:2	0/1:0,70:30:70:1.00:2	./.	0/1:0,68:31:69:1.00:2	0/1:0,92:31:92:1.00:2
chr1	171509414	rs111928000	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2
chr1	171509671	rs78008372	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,22:33:33:0.667:2
chr1	171510241	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,9:21:95:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	171511039	rs1687064	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,25:31:26:0.962:2	0/1:0,24:30:24:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,31:30:31:1.00:2	0/1:13,6:32:19:0.316:2	0/1:0,34:29:34:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,24:28:25:0.960:2	./.	0/1:0,24:29:24:1.00:2	0/1:0,38:30:39:1.00:2
chr1	171514731	rs235468	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:33:98:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,25:32:25:1.00:2	0/1:1,111:32:112:0.991:2	0/1:44,38:32:82:0.463:2	0/1:1,100:32:101:0.990:2	0/1:2,76:32:78:0.974:2	0/1:1,112:32:113:0.991:2	./.	0/1:0,100:32:100:1.00:2	0/1:1,150:32:151:0.993:2
chr1	171526570	rs1687057	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,46:32:46:1.00:2	0/1:2,16:32:18:0.889:2	0/1:0,93:32:93:1.00:2	0/1:88,68:32:156:0.436:2	0/1:0,79:32:79:1.00:2	0/1:0,168:32:168:1.00:2	0/1:1,119:32:120:0.992:2	./.	0/1:0,76:32:76:1.00:2	0/1:0,78:32:78:1.00:2
chr1	171526910	rs12025905	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,52:27:113:0.473:2	./.	./.	./.	0/1:79,76:28:155:0.490:2	./.	./.	./.
chr1	171527033	rs141768518	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:23:26:0.385:2	./.	./.	./.	./.
chr1	171527129	rs150114134	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:31:37:0.378:2	./.	./.	./.	./.	./.
chr1	171556165	rs235501	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,96:32:97:0.990:2	0/1:52,45:31:97:0.464:2	0/1:0,97:31:97:1.00:2	0/1:71,48:32:119:0.403:2	0/1:2,83:32:85:0.976:2	./.	0/1:0,74:32:74:1.00:2	0/1:0,156:32:156:1.00:2
chr1	171605161	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	171605539	rs61730974	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,29:29:63:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr1	171621525	rs2234926	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:31:27:0.481:2	./.	./.	./.	0/1:117,74:32:191:0.387:2	./.	./.	./.	0/1:86,102:31:188:0.543:2
chr1	171751236	rs2294720	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,22:33:46:0.478:2	./.	./.	0/1:16,17:32:33:0.515:2	0/1:23,25:32:48:0.521:2	./.	0/1:27,18:33:45:0.400:2	./.
chr1	171753039	rs2232816	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,70:29:152:0.464:2	./.	./.	./.	0/1:93,96:30:189:0.508:2	./.	0/1:68,67:29:136:0.496:2	./.
chr1	171753269	rs139771818	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:29:62:0.516:2	0/1:22,19:31:41:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	171755170	rs2232818	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,48:32:111:0.432:2	./.	./.	./.	0/1:54,50:32:104:0.481:2	./.	0/1:47,44:33:91:0.484:2	./.
chr1	171956803	rs3736790	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.
chr1	172011152	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.
chr1	172277925	rs34870740	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:32:24:0.417:2	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	172348157	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.
chr1	172356437	rs6688654	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,60:29:60:1.00:2
chr1	172410967	rs1063412	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,40:31:89:0.449:2	0/1:16,15:31:31:0.484:2	0/1:3,4:32:7:0.571:2	0/1:41,42:31:83:0.506:2	0/1:33,33:31:66:0.500:2	0/1:0,68:31:68:1.00:2	0/1:32,28:31:60:0.467:2	0/1:37,38:32:75:0.507:2	0/1:44,41:33:85:0.482:2	0/1:33,21:32:54:0.389:2	0/1:35,51:31:86:0.593:2
chr1	172411496	rs2230471	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,3:33:3:1.00:2	0/1:16,11:31:27:0.407:2	0/1:0,24:30:24:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,18:32:18:1.00:2	0/1:2,23:32:25:0.920:2	0/1:0,27:32:27:1.00:2	0/1:0,21:31:21:1.00:2	0/1:18,15:31:34:0.455:2
chr1	172411768	rs13932	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,27:33:53:0.509:2	0/1:15,14:33:29:0.483:2	0/1:0,5:33:5:1.00:2	./.	0/1:29,23:33:52:0.442:2	./.	./.	0/1:27,23:32:50:0.460:2	0/1:49,39:33:88:0.443:2	0/1:22,25:32:47:0.532:2	./.
chr1	172412027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,3:30:31:0.097:2	./.	./.	./.	./.	./.	./.	./.
chr1	172412845	rs60302909	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,26:30:53:0.491:2	0/1:16,15:31:31:0.484:2	0/1:2,8:29:10:0.800:2	./.	0/1:29,29:30:58:0.500:2	./.	./.	0/1:50,39:30:89:0.438:2	0/1:40,27:31:67:0.403:2	0/1:34,23:31:57:0.404:2	./.
chr1	172412995	rs3213563	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,27:32:60:0.450:2	0/1:19,18:32:37:0.486:2	0/1:8,9:34:17:0.529:2	0/1:49,51:32:100:0.510:2	0/1:38,38:32:76:0.500:2	0/1:0,89:32:89:1.00:2	0/1:2,88:32:90:0.978:2	0/1:42,64:32:106:0.604:2	0/1:41,31:33:72:0.431:2	0/1:29,25:33:54:0.463:2	0/1:58,34:32:92:0.370:2
chr1	172422209	rs2285175	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,40:32:76:0.526:2	0/1:16,31:32:47:0.660:2	0/1:10,3:31:13:0.231:2	./.	0/1:58,49:32:107:0.458:2	./.	./.	0/1:56,69:31:125:0.552:2	0/1:60,43:31:103:0.417:2	0/1:56,60:31:116:0.517:2	./.
chr1	172425640	rs78728841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	172437592	rs1129942	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:1,35:32:36:0.972:2	0/1:0,5:31:5:1.00:2	0/1:25,33:31:58:0.569:2	0/1:0,32:30:32:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,54:31:54:1.00:2	0/1:45,20:32:65:0.308:2
chr1	172501643	rs2239816	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,30:32:53:0.566:2	0/1:20,26:30:46:0.565:2	./.	0/1:19,21:31:40:0.525:2	0/1:26,26:31:52:0.500:2	./.	0/1:20,8:29:28:0.286:2	./.
chr1	172502340	rs2285143	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	172502444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2
chr1	172502479	rs2285144	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,10:33:21:0.476:2	0/1:78,60:33:138:0.435:2	0/1:2,158:32:160:0.988:2	0/1:80,56:32:136:0.412:2	0/1:60,47:33:107:0.439:2	0/1:79,50:32:129:0.388:2	0/1:66,40:33:106:0.377:2	0/1:40,54:32:94:0.574:2	./.
chr1	172525158	rs114570278	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	172547465	rs2285664	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,51:33:151:0.338:2	0/1:38,50:32:88:0.568:2	./.	0/1:66,40:32:106:0.377:2	0/1:69,79:33:148:0.534:2	./.	0/1:41,71:33:112:0.634:2	./.
chr1	172558524	rs41264546	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,17:29:32:0.531:2	./.	./.	./.	0/1:30,20:29:50:0.400:2	./.	./.
chr1	172560216	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,13:31:147:0.088:2	./.	./.	./.	./.	./.	./.	./.
chr1	173020073	rs185993550	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,101:33:197:0.513:2	./.
chr1	173472465	rs72709309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,32:32:49:0.653:2	./.
chr1	173474429	rs12026637	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,37:33:58:0.638:2	0/1:10,15:32:25:0.600:2	./.	./.	0/1:36,14:33:50:0.280:2	./.	./.	0/1:71,36:33:107:0.336:2	0/1:45,32:34:77:0.416:2	0/1:37,39:33:76:0.513:2	0/1:49,33:34:82:0.402:2
chr1	173495780	rs113016824	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,25:31:90:0.278:2	./.	./.	./.	./.	./.	./.
chr1	173516871	rs16846206	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,37:32:89:0.416:2	0/1:27,16:32:43:0.372:2	./.	./.	0/1:78,54:31:132:0.409:2	./.	./.	0/1:66,56:32:122:0.459:2	0/1:95,72:33:168:0.431:2	0/1:79,50:32:129:0.388:2	0/1:88,77:32:166:0.467:2
chr1	173516903	rs10494490	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:51,32:31:83:0.386:2	0/1:24,13:31:37:0.351:2	./.	./.	0/1:66,42:30:108:0.389:2	./.	./.	0/1:51,50:29:102:0.495:2	0/1:85,61:31:146:0.418:2	0/1:71,40:28:111:0.360:2	0/1:78,63:30:141:0.447:2
chr1	173552663	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2
chr1	173569310	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.
chr1	173800738	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:34:74:0.054:2	./.	./.
chr1	173814381	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:31:193:0.026:2
chr1	173823011	rs149660059	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,71:32:127:0.559:2	./.	./.
chr1	173839907	rs36119794	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.	0/1:32,25:30:57:0.439:2	./.	./.	./.
chr1	173855055	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	173855208	rs16846520	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,36:29:56:0.643:2	./.	0/1:26,21:30:47:0.447:2	./.	./.
chr1	173878832	rs5878	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,37:33:78:0.474:2	0/1:21,15:32:36:0.417:2	0/1:8,6:33:14:0.429:2	0/1:56,46:33:102:0.451:2	0/1:70,42:32:112:0.375:2	0/1:1,75:33:76:0.987:2	0/1:112,4:32:116:0.034:2	0/1:80,45:32:125:0.360:2	./.	./.	./.
chr1	173878862	rs5877	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,35:32:83:0.422:2	0/1:23,22:32:45:0.489:2	0/1:7,7:31:14:0.500:2	0/1:63,53:32:116:0.457:2	0/1:79,53:32:132:0.402:2	0/1:2,78:32:80:0.975:2	./.	0/1:87,53:32:140:0.379:2	./.	./.	./.
chr1	173915951	rs139674996	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2
chr1	174516999	rs41266050	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,46:31:82:0.561:2	./.	0/1:63,38:29:102:0.376:2	./.	0/1:40,43:31:83:0.518:2	0/1:40,50:32:90:0.556:2	./.	./.
chr1	174846737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.
chr1	174959108	rs41266060	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:33:23:0.478:2	0/1:11,17:32:28:0.607:2	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:32:26:0.346:2	./.
chr1	174973951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	./.	./.	./.
chr1	174975902	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.	./.	./.
chr1	174975946	rs147412966	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.
chr1	174987673	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.	./.	./.	./.
chr1	175046789	rs2072032	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,13:29:13:1.00:2	0/1:85,59:30:144:0.410:2	0/1:85,69:30:154:0.448:2	0/1:1,139:30:140:0.993:2	0/1:103,69:29:172:0.401:2	0/1:104,79:30:183:0.432:2	0/1:50,50:30:100:0.500:2	0/1:46,42:30:88:0.477:2	0/1:76,55:29:131:0.420:2
chr1	175046826	rs34171717	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,46:29:118:0.390:2	./.	./.
chr1	175046835	rs41266080	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,96:31:171:0.561:2	./.	./.	./.	./.	./.	./.
chr1	175049379	rs16847812	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,35:31:85:0.412:2	./.	./.	0/1:25,29:30:54:0.537:2
chr1	175049405	rs61742080	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	175054548	rs1573758	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,5:30:5:1.00:2	0/1:16,44:29:60:0.733:2	0/1:33,29:31:62:0.468:2	0/1:0,57:29:57:1.00:2	0/1:51,30:30:81:0.370:2	0/1:39,40:29:79:0.506:2	0/1:40,41:32:81:0.506:2	0/1:31,30:31:61:0.492:2	0/1:25,40:30:65:0.615:2
chr1	175086276	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:34:42:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	175087729	rs6696455	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,28:31:71:0.394:2	0/1:25,26:30:51:0.510:2	0/1:0,8:30:8:1.00:2	0/1:52,31:30:84:0.373:2	0/1:48,20:31:69:0.294:2	0/1:0,46:29:46:1.00:2	0/1:33,16:31:49:0.327:2	0/1:69,44:30:113:0.389:2	0/1:42,32:31:74:0.432:2	./.	0/1:53,32:29:85:0.376:2
chr1	175087815	rs116355400	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,72:32:146:0.493:2	./.	./.	./.
chr1	175087884	rs2269654	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,67:30:147:0.456:2	./.	./.	0/1:54,38:30:94:0.413:2
chr1	175087885	rs6694078	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,67:30:148:0.453:2	./.	./.	0/1:54,42:29:96:0.438:2
chr1	175092674	rs2285215	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,41:33:103:0.398:2	0/1:36,27:32:63:0.429:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,149:32:149:1.00:2	0/1:0,131:32:131:1.00:2	0/1:1,133:32:134:0.993:2	0/1:74,80:32:154:0.519:2	0/1:94,47:32:141:0.333:2	0/1:0,109:33:109:1.00:2	0/1:73,42:32:115:0.365:2
chr1	175092707	rs10798333	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,40:32:99:0.404:2	0/1:40,25:31:65:0.385:2	0/1:4,4:32:8:0.500:2	./.	0/1:101,47:31:148:0.318:2	0/1:75,54:31:130:0.419:2	0/1:4,124:31:128:0.969:2	0/1:78,83:31:161:0.516:2	0/1:92,50:33:142:0.352:2	0/1:0,108:31:108:1.00:2	0/1:62,42:31:104:0.404:2
chr1	175092734	rs148291406	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,6:32:143:0.042:2	./.	./.
chr1	175097864	rs12022593	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,74:32:75:0.987:2	./.	./.	./.	0/1:47,43:33:90:0.478:2	0/1:31,45:33:76:0.592:2	./.	0/1:30,41:32:71:0.577:2
chr1	175105996	rs2072036	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,25:31:49:0.510:2	./.	./.	./.	./.	0/1:33,23:33:56:0.411:2	./.	./.
chr1	175113578	rs10912897	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:31:113:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,128:30:128:1.00:2	0/1:1,115:30:116:0.991:2	0/1:0,155:30:156:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,150:31:150:1.00:2	0/1:1,101:30:102:0.990:2	0/1:0,126:30:126:1.00:2
chr1	175113623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	175116071	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,10:17:66:0.152:2	./.	./.	./.	./.	./.	./.	./.
chr1	175129932	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,4:33:46:0.087:2	./.	./.	0/1:51,6:28:58:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr1	175129933	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,5:32:38:0.132:2	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	0/1:59,6:28:65:0.092:2
chr1	175129946	rs2072035	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:26,13:32:39:0.333:2	0/1:25,7:32:32:0.219:2	0/1:13,31:31:44:0.705:2	0/1:15,3:32:18:0.167:2	0/1:37,5:31:42:0.119:2	0/1:0,58:32:58:1.00:2	0/1:11,8:32:19:0.421:2	0/1:27,15:32:42:0.357:2
chr1	175129955	rs3208835	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,18:31:46:0.409:2	0/1:8,6:32:14:0.429:2	./.	0/1:1,29:31:30:0.967:2	0/1:0,29:30:29:1.00:2	0/1:28,16:31:44:0.364:2	0/1:1,22:31:23:0.957:2	0/1:29,13:30:42:0.310:2	./.	0/1:0,17:31:17:1.00:2	0/1:0,32:31:32:1.00:2
chr1	175130074	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,20:12:155:0.129:2	./.	./.	./.	./.	./.
chr1	175130204	rs1057239	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,28:33:77:0.364:2	0/1:26,21:32:47:0.447:2	./.	0/1:0,93:33:93:1.00:2	0/1:0,76:32:76:1.00:2	0/1:55,59:31:114:0.518:2	0/1:5,78:32:83:0.940:2	0/1:39,39:33:78:0.500:2	./.	0/1:0,75:32:75:1.00:2	0/1:0,92:33:92:1.00:2
chr1	175130276	rs1135289	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,25:32:25:1.00:2
chr1	175299301	rs2027867	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,27:32:48:0.563:2	0/1:20,16:33:36:0.444:2	0/1:0,6:33:6:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,52:31:52:1.00:2	0/1:26,30:32:56:0.536:2	0/1:0,72:33:72:1.00:2	0/1:48,23:32:71:0.324:2	0/1:0,65:33:65:1.00:2	0/1:18,30:33:48:0.625:2	0/1:26,28:33:54:0.519:2
chr1	175324651	rs2228359	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,26:26:70:0.371:2	0/1:19,11:27:30:0.367:2	0/1:0,8:25:8:1.00:2	0/1:0,53:27:53:1.00:2	0/1:0,44:27:44:1.00:2	0/1:29,24:28:53:0.453:2	0/1:0,57:26:57:1.00:2	0/1:40,37:28:77:0.481:2	0/1:0,66:27:66:1.00:2	0/1:27,23:28:50:0.460:2	0/1:0,66:25:66:1.00:2
chr1	175324711	rs61731115	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:31:16:0.563:2	0/1:62,43:31:105:0.410:2	./.	./.	./.	./.	0/1:75,50:32:125:0.400:2	./.	./.
chr1	175335234	rs1385541	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.	./.	./.	0/1:3,142:33:145:0.979:2
chr1	175348723	rs859427	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,30:33:30:1.00:2	0/1:2,4:31:6:0.667:2	0/1:48,32:31:80:0.400:2	0/1:0,57:32:57:1.00:2	0/1:0,80:32:80:1.00:2	0/1:38,30:32:68:0.441:2	0/1:0,98:32:98:1.00:2	0/1:46,34:32:80:0.425:2	0/1:1,59:32:60:0.983:2	./.
chr1	175355391	rs859437	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,23:31:23:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,20:29:20:1.00:2	0/1:12,12:31:24:0.500:2	0/1:0,22:30:22:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,26:29:26:1.00:2	0/1:19,13:30:32:0.406:2
chr1	175375469	rs2239819	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,95:31:191:0.497:2	0/1:68,56:30:124:0.452:2	./.	0/1:98,95:31:193:0.492:2	0/1:4,187:31:191:0.979:2	./.	./.	0/1:101,90:31:191:0.471:2	./.	0/1:110,86:31:196:0.439:2	./.
chr1	175375635	rs2239818	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,12:31:36:0.333:2	./.	./.	0/1:92,91:31:183:0.497:2	0/1:114,76:31:190:0.400:2	./.	0/1:113,79:32:192:0.411:2	./.	./.
chr1	175375683	rs859399	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:28:140:1.00:2	0/1:0,111:28:111:1.00:2	0/1:25,11:28:36:0.306:2	0/1:102,84:29:186:0.452:2	0/1:2,168:28:170:0.988:2	0/1:1,168:29:169:0.994:2	0/1:97,86:29:183:0.470:2	0/1:103,86:29:189:0.455:2	0/1:95,79:30:174:0.454:2	0/1:0,177:29:177:1.00:2	./.
chr1	175375802	rs859398	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:28:68:1.00:2	0/1:0,49:27:49:1.00:2	0/1:12,6:29:18:0.333:2	0/1:60,41:28:101:0.406:2	0/1:0,114:28:114:1.00:2	0/1:0,96:28:96:1.00:2	0/1:71,61:28:132:0.462:2	0/1:73,61:28:134:0.455:2	0/1:56,35:29:91:0.385:2	0/1:0,64:28:64:1.00:2	./.
chr1	176118169	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	176118219	rs3748618	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,23:32:23:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:19,10:31:29:0.345:2	0/1:28,13:31:41:0.317:2	0/1:2,18:32:20:0.900:2	0/1:19,16:32:35:0.457:2	./.	./.	0/1:43,33:32:76:0.434:2
chr1	176133011	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,5:33:164:0.030:2	0/1:167,5:32:172:0.029:2	0/1:136,10:31:147:0.068:2	./.	0/1:147,11:32:158:0.070:2	./.	0/1:129,12:31:141:0.085:2	./.
chr1	176133020	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,5:34:141:0.035:2	0/1:154,5:33:159:0.031:2	0/1:114,10:33:124:0.081:2	./.	0/1:132,12:31:144:0.083:2	./.	0/1:109,12:33:121:0.099:2	./.
chr1	176659463	rs10913241	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,21:31:56:0.375:2	./.	0/1:33,28:29:61:0.459:2	0/1:34,34:29:68:0.500:2	0/1:29,39:29:68:0.574:2	0/1:29,16:32:45:0.356:2	./.	0/1:21,29:31:50:0.580:2
chr1	176664886	rs138677844	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:31:49:0.367:2	./.
chr1	176809368	rs12118034	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,36:32:67:0.537:2	0/1:17,21:32:38:0.553:2	./.	./.	0/1:57,39:31:96:0.406:2	0/1:39,31:32:70:0.443:2	0/1:61,28:32:89:0.315:2	./.	0/1:56,38:32:94:0.404:2	./.	./.
chr1	176833497	rs12118933	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	0/1:29,21:29:51:0.420:2	./.
chr1	176863836	rs2281180	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,74:32:75:0.987:2	0/1:0,73:33:73:1.00:2	0/1:1,64:32:65:0.985:2	0/1:46,34:32:80:0.425:2	0/1:0,64:33:64:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,44:33:44:1.00:2
chr1	176863842	rs6680908	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	0/1:28,16:32:44:0.364:2	./.
chr1	176863867	rs2228956	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:29:58:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,64:30:64:1.00:2	0/1:1,81:29:82:0.988:2	0/1:0,68:30:68:1.00:2	0/1:0,80:30:80:1.00:2	0/1:52,43:29:95:0.453:2	0/1:0,78:31:79:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,65:30:65:1.00:2
chr1	176863906	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr1	176918333	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.	./.
chr1	176992553	rs172917	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,52:29:84:0.619:2	0/1:15,23:29:38:0.605:2	./.	./.	0/1:60,41:29:101:0.406:2	0/1:0,82:29:83:1.00:2	./.	0/1:69,56:29:125:0.448:2	0/1:80,40:29:120:0.333:2	0/1:0,63:28:64:1.00:2	0/1:43,40:27:83:0.482:2
chr1	176992676	rs10798496	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,31:31:45:0.689:2	0/1:23,16:31:39:0.410:2	./.	./.	0/1:52,50:31:102:0.490:2	0/1:0,60:30:60:1.00:2	0/1:0,108:31:108:1.00:2	./.	0/1:38,37:32:75:0.493:2	0/1:0,47:31:47:1.00:2	0/1:39,28:31:67:0.418:2
chr1	177001896	rs2076069	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.
chr1	177247854	rs3176443	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:28:48:0.979:2	0/1:0,46:29:46:1.00:2	0/1:7,6:28:13:0.462:2	0/1:40,44:29:84:0.524:2	./.	0/1:32,35:29:67:0.522:2	./.	./.	./.	./.	./.
chr1	177250084	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,14:11:76:0.184:2	./.	./.	./.	./.
chr1	177901619	rs7531399	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,6:30:15:0.400:2	0/1:14,20:30:34:0.588:2	./.	0/1:11,18:29:29:0.621:2	0/1:17,10:30:27:0.370:2	./.	./.
chr1	177901655	rs3748792	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,11:30:27:0.407:2	0/1:17,18:30:35:0.514:2	./.	0/1:17,21:29:38:0.553:2	0/1:24,13:29:37:0.351:2	./.	./.
chr1	177901658	rs7554597	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	0/1:18,18:31:36:0.500:2	./.	0/1:16,21:31:37:0.568:2	0/1:25,13:32:38:0.342:2	./.	./.
chr1	177901713	rs522367	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,22:32:49:0.449:2	0/1:13,12:32:25:0.480:2	./.	./.	0/1:33,19:32:52:0.365:2	0/1:30,20:30:50:0.400:2	./.	0/1:23,28:33:51:0.549:2	0/1:0,48:33:48:1.00:2	./.	0/1:33,21:31:54:0.389:2
chr1	177902387	rs61745560	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,26:31:56:0.464:2	0/1:34,22:30:56:0.393:2	./.	0/1:31,50:31:81:0.617:2	0/1:23,38:33:61:0.623:2	./.	./.
chr1	177902725	rs3813649	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,23:31:64:0.359:2	0/1:57,34:31:91:0.374:2	./.	0/1:56,32:30:88:0.364:2	0/1:45,47:31:92:0.511:2	./.	./.
chr1	177902753	rs591120	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,22:32:52:0.423:2	0/1:13,16:32:29:0.552:2	./.	./.	0/1:30,16:32:46:0.348:2	0/1:41,28:33:70:0.406:2	./.	0/1:39,23:32:62:0.371:2	0/1:0,60:33:60:1.00:2	./.	0/1:38,33:32:71:0.465:2
chr1	177905469	rs7522194	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,88:31:185:0.476:2	0/1:1,178:30:179:0.994:2	./.	./.	0/1:86,93:32:179:0.520:2	./.	./.
chr1	177908852	rs943762	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:33:16:0.500:2	./.	./.	./.	0/1:67,51:32:118:0.432:2	0/1:90,61:32:151:0.404:2	./.	0/1:63,60:32:123:0.488:2	./.
chr1	177917640	rs144118841	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	177917686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,4:32:34:0.118:2	./.	./.	./.	./.	./.	./.	./.
chr1	177923440	rs12129817	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,20:33:69:0.290:2	0/1:18,19:32:37:0.514:2	./.	0/1:0,84:32:84:1.00:2	0/1:68,50:32:118:0.424:2	./.	0/1:79,51:32:130:0.392:2	./.	./.	0/1:29,41:32:70:0.586:2	0/1:34,41:31:75:0.547:2
chr1	177929521	rs35891059	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	177929554	rs10913472	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,60:31:132:0.455:2	0/1:55,26:31:81:0.321:2	0/1:6,6:31:12:0.500:2	0/1:0,85:30:86:1.00:2	0/1:34,30:28:64:0.469:2	0/1:60,45:30:105:0.429:2	0/1:2,55:30:57:0.965:2	0/1:4,77:30:81:0.951:2	0/1:80,52:31:132:0.394:2	0/1:0,90:31:90:1.00:2	0/1:0,115:31:115:1.00:2
chr1	177929940	rs7413442	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,74:31:171:0.433:2	0/1:59,47:32:106:0.443:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	177929987	rs12040910	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:29:135:1.00:2	0/1:0,62:27:62:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,138:29:138:1.00:2	0/1:75,74:28:149:0.497:2	0/1:66,78:28:144:0.542:2	0/1:2,185:29:187:0.989:2	0/1:3,159:29:162:0.981:2	0/1:93,63:30:156:0.404:2	0/1:0,133:29:133:1.00:2	0/1:0,129:29:129:1.00:2
chr1	177935050	rs1889981	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,26:32:44:0.591:2	./.	./.	0/1:22,13:32:35:0.371:2	0/1:0,48:32:48:1.00:2	0/1:26,18:31:44:0.409:2	./.	0/1:26,29:31:55:0.527:2
chr1	177937009	rs35959058	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	178063756	rs73049352	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:32:80:0.400:2	0/1:28,19:33:47:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	178412192	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.
chr1	178483231	rs10913563	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,50:31:101:0.495:2	0/1:70,52:31:122:0.426:2	0/1:45,54:30:99:0.545:2	0/1:89,50:32:139:0.360:2	0/1:97,71:31:169:0.423:2	0/1:65,77:32:143:0.542:2	0/1:61,65:30:126:0.516:2	0/1:76,61:32:137:0.445:2
chr1	178489978	rs3813636	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,46:29:103:0.447:2	0/1:42,35:30:77:0.455:2	0/1:56,49:30:105:0.467:2	0/1:57,46:30:103:0.447:2	0/1:84,60:29:144:0.417:2	0/1:57,53:29:110:0.482:2	0/1:52,54:29:106:0.509:2	0/1:57,40:29:97:0.412:2
chr1	178492447	rs7527160	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	0/1:17,3:32:20:0.150:2	./.	0/1:0,15:32:15:1.00:2	0/1:4,5:33:9:0.556:2	0/1:10,5:34:15:0.333:2	0/1:18,9:33:27:0.333:2
chr1	178514622	rs12568310	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,45:32:72:0.625:2	0/1:19,16:32:35:0.457:2	0/1:27,22:31:49:0.449:2	0/1:10,13:30:23:0.565:2	0/1:22,29:32:51:0.569:2	0/1:26,20:34:46:0.435:2	0/1:11,19:33:30:0.633:2	0/1:31,25:33:57:0.446:2
chr1	178745914	rs61747558	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,37:32:109:0.339:2	./.	./.	./.	./.
chr1	178745947	rs6665037	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,41:30:84:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr1	178858759	rs3753534	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:19,7:31:26:0.269:2	./.	./.	./.	./.	./.	0/1:21,23:32:45:0.523:2
chr1	179052080	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:27:12:0.250:2	./.	./.	./.	0/1:67,10:23:77:0.130:2	./.	./.	./.	./.
chr1	179055020	rs2296376	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:31:100:0.500:2	./.	./.	./.
chr1	179076986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.
chr1	179078523	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	179084080	rs2274230	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,79:31:185:0.427:2	./.	./.
chr1	179095671	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:30:197:0.036:2	./.	./.	./.
chr1	179112145	rs1318056	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,29:33:77:0.377:2	0/1:28,27:32:55:0.491:2	0/1:9,8:31:17:0.471:2	./.	0/1:48,50:32:98:0.510:2	0/1:62,50:32:112:0.446:2	0/1:56,52:32:108:0.481:2	0/1:62,60:32:122:0.492:2	./.	0/1:60,52:33:112:0.464:2	0/1:80,37:32:117:0.316:2
chr1	179307047	rs10913726	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,19:31:19:1.00:2	0/1:28,17:31:45:0.378:2	0/1:7,4:31:11:0.364:2	0/1:0,21:31:21:1.00:2	./.	0/1:1,22:32:23:0.957:2	0/1:30,25:32:55:0.455:2
chr1	179310262	rs11576517	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:79,76:33:155:0.490:2	0/1:41,42:33:83:0.506:2	./.	./.	./.	./.	0/1:63,47:32:110:0.427:2	./.	./.	./.	./.
chr1	179310439	rs7547733	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,32:32:72:0.444:2	0/1:15,13:32:28:0.464:2	0/1:3,4:32:7:0.571:2	0/1:22,34:32:56:0.607:2	./.	./.	./.	./.	0/1:40,17:33:57:0.298:2	./.	0/1:39,28:32:67:0.418:2
chr1	179311323	rs144255785	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2	./.	./.	./.	./.
chr1	179312752	rs10753191	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,25:32:56:0.446:2	./.	./.	./.	./.	./.	./.	./.
chr1	179319541	rs3753526	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,78:32:172:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr1	179320578	rs13306731	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,62:31:138:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr1	179347832	rs10798674	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,34:33:34:1.00:2	0/1:6,8:34:14:0.571:2	0/1:0,64:32:64:1.00:2	./.	0/1:42,32:32:74:0.432:2	0/1:43,40:32:83:0.482:2	./.	0/1:62,34:34:96:0.354:2	./.	0/1:46,37:33:83:0.446:2
chr1	179414105	rs11577579	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,14:33:14:1.00:2	./.	0/1:6,12:34:18:0.667:2	0/1:2,9:32:11:0.818:2	./.	0/1:0,19:32:19:1.00:2	0/1:25,26:32:51:0.510:2
chr1	179452275	rs10494520	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,31:32:77:0.403:2	./.	./.	./.	./.	./.	0/1:39,17:33:56:0.304:2	./.
chr1	179504043	rs10588433	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,91:33:91:1.00:2	0/1:0,46:33:46:1.00:2	./.	0/1:61,42:34:103:0.408:2	./.	0/1:49,41:32:90:0.456:2	0/1:40,20:33:60:0.333:2	./.	0/1:46,35:34:81:0.432:2	./.	0/1:50,40:34:90:0.444:2
chr1	179520422	rs3818587	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,75:33:167:0.449:2	./.	./.
chr1	179520506	rs1410592	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,40:32:87:0.460:2	0/1:31,22:33:53:0.415:2	0/1:0,16:32:16:1.00:2	0/1:65,49:33:115:0.430:2	0/1:2,112:32:114:0.982:2	./.	0/1:1,117:32:118:0.992:2	0/1:1,119:32:120:0.992:2	0/1:72,71:33:143:0.497:2	0/1:56,37:33:93:0.398:2	0/1:0,120:33:120:1.00:2
chr1	179521731	rs115778946	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,37:29:59:0.627:2	0/1:19,8:29:27:0.296:2	0/1:7,4:29:11:0.364:2	0/1:33,21:30:55:0.389:2	./.	./.	./.	./.	./.	./.	0/1:21,28:29:49:0.571:2
chr1	179526214	rs61747728	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,50:32:120:0.420:2	./.	./.	0/1:107,87:32:194:0.448:2	./.	0/1:86,55:32:143:0.390:2	./.
chr1	179533915	rs3738423	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:33:50:0.480:2	./.	./.
chr1	179544898	rs1079292	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:36:2:1.00:2	./.	./.
chr1	179562740	rs61310274	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,95:30:180:0.528:2	0/1:88,88:30:176:0.500:2	0/1:18,18:30:36:0.500:2	0/1:98,99:31:197:0.503:2	./.	./.	0/1:91,102:30:193:0.528:2	./.	0/1:0,180:31:181:1.00:2	./.	0/1:93,93:30:187:0.500:2
chr1	179604864	rs4628468	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,46:32:46:1.00:2	./.	0/1:1,26:31:27:0.963:2	0/1:17,17:32:34:0.500:2	./.	0/1:2,37:32:39:0.949:2	0/1:15,14:31:29:0.483:2	0/1:26,22:32:48:0.458:2
chr1	179609549	rs147735255	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,70:33:153:0.458:2	./.	./.	./.	./.
chr1	179609589	rs16854429	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,71:32:143:0.497:2	0/1:38,36:32:74:0.486:2	./.	0/1:98,74:32:172:0.430:2	./.	0/1:81,61:31:142:0.430:2	./.	./.	./.	0/1:69,49:32:118:0.415:2	./.
chr1	179620047	rs199784694	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.
chr1	179620175	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.
chr1	179631242	rs35448215	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,31:30:32:0.969:2	./.	0/1:39,8:29:47:0.170:2	0/1:0,27:30:27:1.00:2	./.	0/1:11,8:31:19:0.421:2	0/1:24,19:31:43:0.442:2
chr1	179783095	rs202244671	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,5:28:50:0.100:2	0/1:26,6:29:32:0.188:2	0/1:33,8:29:41:0.195:2	0/1:30,5:29:35:0.143:2	0/1:46,6:28:52:0.115:2	0/1:28,4:32:32:0.125:2	0/1:19,4:31:23:0.174:2	0/1:42,8:31:50:0.160:2
chr1	179852074	rs1281378	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,54:28:54:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:47,35:28:82:0.427:2	0/1:1,82:27:83:0.988:2	0/1:54,42:28:96:0.438:2	0/1:52,37:28:89:0.416:2	./.	0/1:32,27:27:59:0.458:2	0/1:1,37:27:38:0.974:2
chr1	179858444	rs2245425	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,54:32:56:0.964:2	0/1:0,33:31:33:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:9,17:32:26:0.654:2	0/1:0,58:31:58:1.00:2	0/1:24,20:31:44:0.455:2	0/1:0,56:32:56:1.00:2	./.	0/1:32,27:32:59:0.458:2	0/1:2,68:32:70:0.971:2
chr1	179876988	rs609521	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,95:30:95:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:58,17:30:75:0.227:2	0/1:1,107:30:108:0.991:2	0/1:46,56:30:102:0.549:2	0/1:80,62:30:142:0.437:2	./.	0/1:68,61:30:129:0.473:2	0/1:1,96:31:98:0.990:2
chr1	179877780	rs17279712	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,56:32:58:0.966:2	./.	./.	./.	./.	./.	0/1:38,32:33:70:0.457:2	./.
chr1	179883206	rs17370826	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,119:30:125:0.960:2	./.	./.	./.	./.	./.	0/1:58,47:31:105:0.448:2	./.
chr1	179887125	rs627897	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:1,48:33:49:0.980:2	0/1:0,9:32:9:1.00:2	0/1:0,92:32:92:1.00:2	0/1:43,32:31:75:0.427:2	0/1:0,79:31:79:1.00:2	0/1:1,81:33:82:0.988:2	0/1:0,91:33:91:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,84:33:84:1.00:2
chr1	179965698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.
chr1	179972337	rs17371159	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:33:52:0.423:2	0/1:31,28:32:59:0.475:2	0/1:48,38:34:86:0.442:2	./.	./.
chr1	179989742	rs2477120	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,110:32:110:1.00:2	0/1:32,31:31:63:0.492:2	0/1:0,101:32:101:1.00:2	0/1:31,49:33:80:0.613:2	0/1:51,57:32:108:0.528:2	./.	0/1:0,82:32:82:1.00:2	0/1:1,107:33:108:0.991:2
chr1	180000542	rs12125245	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,36:32:97:0.371:2	0/1:83,72:32:155:0.465:2	0/1:83,66:32:149:0.443:2	./.	./.
chr1	180010911	rs16855164	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,86:30:176:0.489:2	./.	./.	./.	./.	./.	./.
chr1	180023038	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.	./.
chr1	180053251	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.	./.
chr1	180064738	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,50:32:93:0.538:2	./.	./.	./.
chr1	180080290	rs12126496	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,83:31:152:0.546:2	./.	0/1:84,69:32:153:0.451:2	./.	./.
chr1	180144485	rs10913939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,86:32:156:0.551:2	./.	0/1:97,70:32:167:0.419:2	0/1:75,104:33:179:0.581:2	./.	./.	./.
chr1	180144518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	180145088	rs2298206	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:28:85:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,14:29:14:1.00:2	0/1:1,137:28:138:0.993:2	0/1:85,68:28:153:0.444:2	0/1:0,132:29:132:1.00:2	0/1:1,174:28:175:0.994:2	0/1:1,141:28:142:0.993:2	0/1:0,121:29:121:1.00:2	0/1:0,79:28:79:1.00:2	0/1:0,88:27:88:1.00:2
chr1	180148012	rs17855475	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,22:32:66:0.333:2	./.	0/1:29,45:32:74:0.608:2	0/1:53,64:33:117:0.547:2	./.	./.	./.
chr1	180151432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2
chr1	180159654	rs7521513	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,25:29:71:0.352:2	./.	0/1:70,41:31:111:0.369:2	0/1:70,30:30:100:0.300:2	./.	./.	./.
chr1	180159657	rs1050154	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,25:30:72:0.347:2	./.	0/1:66,40:31:106:0.377:2	0/1:66,30:31:96:0.313:2	./.	./.	./.
chr1	180166152	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr1	180243524	rs7536561	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,48:33:49:0.980:2	0/1:2,34:32:36:0.944:2	./.	./.	0/1:3,88:32:91:0.967:2	0/1:0,69:32:69:1.00:2	./.	0/1:55,51:32:106:0.481:2	0/1:36,37:33:73:0.507:2	0/1:40,37:32:77:0.481:2	./.
chr1	180832957	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,39:33:56:0.696:2	./.
chr1	180885430	rs10732273	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,22:30:22:1.00:2	0/1:1,37:31:38:0.974:2	0/1:0,34:31:34:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,19:31:19:1.00:2	0/1:2,23:31:25:0.920:2
chr1	180886216	rs77695365	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,55:31:102:0.539:2	./.
chr1	180897569	rs3747958	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,23:33:48:0.479:2	0/1:24,19:32:43:0.442:2	0/1:2,3:26:5:0.600:2	0/1:34,46:33:81:0.575:2	0/1:33,36:32:69:0.522:2	0/1:44,29:33:73:0.397:2	./.	0/1:35,51:32:86:0.593:2	0/1:29,24:32:53:0.453:2	./.	0/1:13,23:33:36:0.639:2
chr1	180904787	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2
chr1	180905263	rs17302207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,17:31:34:0.500:2	./.	./.	./.	./.	./.	./.
chr1	180905352	rs3795505	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:57:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,12:30:12:1.00:2	0/1:54,37:29:91:0.407:2	./.	0/1:43,33:29:77:0.434:2	0/1:53,30:31:83:0.361:2	0/1:2,83:30:85:0.976:2	0/1:53,44:30:97:0.454:2	0/1:29,37:28:66:0.561:2	0/1:0,74:30:74:1.00:2
chr1	180905448	rs3795504	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,4:31:4:1.00:2	0/1:58,31:30:89:0.348:2	./.	0/1:32,29:31:61:0.475:2	0/1:51,26:31:77:0.338:2	0/1:1,57:31:58:0.983:2	0/1:30,16:31:46:0.348:2	0/1:37,37:32:74:0.500:2	0/1:1,58:31:59:0.983:2
chr1	180905694	rs3795503	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,21:27:54:0.389:2	./.	0/1:25,21:28:46:0.457:2	./.	./.	./.	0/1:13,24:30:37:0.649:2	./.
chr1	180910200	rs201945338	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:29:52:0.423:2
chr1	180913597	rs2331995	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,33:30:33:1.00:2
chr1	180953853	rs3747957	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,26:29:62:0.419:2	0/1:20,17:28:37:0.459:2	./.	0/1:1,97:30:98:0.990:2	0/1:46,41:28:87:0.471:2	0/1:63,42:30:105:0.400:2	0/1:0,62:30:62:1.00:2	0/1:55,38:29:93:0.409:2	0/1:63,45:31:108:0.417:2	0/1:0,85:29:85:1.00:2	0/1:56,56:30:112:0.500:2
chr1	180962526	rs34036241	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:32:79:0.430:2	0/1:46,48:32:94:0.511:2	./.	./.	./.
chr1	181018236	rs2236410	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,70:29:151:0.464:2	./.	./.	0/1:83,91:30:174:0.523:2	./.	./.	./.
chr1	181018258	rs3863720	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,32:32:104:0.308:2	./.
chr1	181018356	rs139058145	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,88:32:155:0.568:2	./.	./.
chr1	181021483	rs35223984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:29:44:0.386:2	./.	./.	./.	./.	./.
chr1	181024404	rs3747956	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,76:30:194:0.392:2	0/1:108,76:30:184:0.413:2	0/1:114,72:31:186:0.387:2	0/1:0,184:30:184:1.00:2	./.	0/1:114,76:31:190:0.400:2	./.
chr1	181058313	rs3747955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	181058891	rs3747951	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:31:44:0.395:2	./.	0/1:15,12:31:27:0.444:2	./.
chr1	181059090	rs141671790	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2
chr1	181059893	rs41268464	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:32:19:0.316:2	./.	0/1:13,3:30:16:0.188:2	./.
chr1	181548341	rs17443123	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,70:31:154:0.455:2	./.	./.	./.	./.	./.	./.
chr1	181684517	rs35265801	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:32:56:0.571:2	./.	./.	./.	./.	./.
chr1	181685172	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.	./.
chr1	181701799	rs35737760	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:27:43:0.488:2	./.	./.	0/1:28,15:29:43:0.349:2	./.
chr1	181701916	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,28:33:99:0.283:2	./.	./.
chr1	181702616	rs41304253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:31:62:0.435:2	./.
chr1	181706685	rs34488539	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,39:31:95:0.411:2	./.	./.	0/1:65,64:32:129:0.496:2	./.	./.	0/1:41,40:31:81:0.494:2	./.
chr1	181725110	rs4652678	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,22:30:50:0.440:2	0/1:24,25:30:49:0.510:2	./.	0/1:35,19:30:54:0.352:2	0/1:30,32:30:62:0.516:2	./.	0/1:0,48:30:48:1.00:2	0/1:0,57:30:57:1.00:2
chr1	181732586	rs115093623	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.	./.	./.
chr1	181735757	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.
chr1	181741301	rs199930	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,89:32:197:0.452:2	./.	0/1:110,86:32:196:0.439:2	0/1:120,75:32:195:0.385:2	./.	0/1:0,172:32:172:1.00:2	0/1:1,171:32:172:0.994:2
chr1	181759638	rs34741608	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,50:28:101:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr1	181759657	rs704326	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:3,49:31:52:0.942:2	0/1:7,9:29:16:0.563:2	0/1:55,38:30:93:0.409:2	./.	0/1:0,105:30:105:1.00:2	0/1:59,56:30:115:0.487:2	./.	0/1:0,125:31:125:1.00:2	./.	./.
chr1	182026813	rs12568050	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	0/1:92,69:32:161:0.429:2	./.	0/1:61,37:33:98:0.378:2	./.
chr1	182027022	rs12564283	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	0/1:100,67:30:167:0.401:2	./.	0/1:60,32:30:92:0.348:2	./.
chr1	182356399	rs1058111	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,8:32:8:1.00:2	0/1:47,39:32:86:0.453:2	./.	./.	0/1:40,41:32:81:0.506:2	./.	0/1:52,47:33:99:0.475:2	0/1:0,85:32:85:1.00:2	0/1:52,61:32:113:0.540:2
chr1	182357823	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.
chr1	182369078	rs6698722	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:33:99:1.00:2	0/1:1,51:32:52:0.981:2	0/1:0,10:32:10:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,128:32:129:0.992:2	0/1:61,56:32:117:0.479:2	0/1:0,132:33:132:1.00:2	0/1:1,125:32:126:0.992:2	0/1:2,125:33:127:0.984:2	0/1:0,131:32:131:1.00:2	0/1:79,54:33:133:0.406:2
chr1	182369233	rs6674281	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:2,44:33:46:0.957:2	0/1:0,5:33:5:1.00:2	0/1:37,37:32:74:0.500:2	./.	./.	0/1:36,58:33:94:0.617:2	./.	0/1:45,38:33:83:0.458:2	0/1:0,70:32:70:1.00:2	0/1:42,38:32:80:0.475:2
chr1	182369738	rs7551829	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	0/1:0,3:28:3:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,4:34:4:1.00:2	./.	./.
chr1	182423146	rs41299607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:32:54:0.389:2	./.
chr1	182443462	rs649437	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:33:15:1.00:2	0/1:102,77:33:179:0.430:2	0/1:89,60:32:149:0.403:2	0/1:3,160:32:163:0.982:2	./.	0/1:109,81:32:190:0.426:2	./.	./.	0/1:90,86:33:176:0.489:2
chr1	182496829	rs7535533	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,68:33:69:1.00:2	0/1:0,62:32:62:1.00:2	./.	0/1:44,43:32:87:0.494:2	0/1:32,26:32:58:0.448:2	./.	0/1:1,44:33:45:0.978:2	0/1:42,28:32:70:0.400:2	0/1:39,37:33:76:0.487:2	0/1:0,63:31:63:1.00:2	./.
chr1	182509389	rs61749260	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,32:31:91:0.352:2	./.	./.	./.	./.	./.	./.
chr1	182525189	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,33:33:78:0.423:2	./.	./.
chr1	182551334	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	182551337	rs627928	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,138:33:139:0.993:2	0/1:0,99:33:99:1.00:2	0/1:13,12:31:25:0.480:2	0/1:1,159:33:160:0.994:2	./.	./.	0/1:107,68:33:175:0.389:2	0/1:107,66:33:173:0.382:2	./.	0/1:0,99:33:99:1.00:2	0/1:104,80:33:184:0.435:2
chr1	182554557	rs486907	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,70:32:161:0.438:2	0/1:44,39:32:83:0.470:2	0/1:12,8:30:20:0.400:2	0/1:7,169:31:176:0.960:2	0/1:158,5:29:163:0.031:2	./.	0/1:92,64:32:156:0.410:2	0/1:115,83:31:198:0.419:2	./.	0/1:108,60:32:168:0.357:2	./.
chr1	182554625	rs149129827	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,88:30:186:0.473:2	./.	./.	./.	./.	./.	./.
chr1	182569626	rs1144566	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:29:88:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,137:29:138:1.00:2	0/1:0,165:29:165:1.00:2	0/1:0,155:29:155:1.00:2	0/1:0,162:30:162:1.00:2	0/1:0,158:29:158:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,105:29:105:1.00:2	0/1:0,106:28:106:1.00:2
chr1	182573343	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:29:49:0.082:2	./.	./.	./.
chr1	182640851	rs569956	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:110,76:33:186:0.409:2	0/1:81,55:32:136:0.404:2	./.	./.	0/1:118,78:32:196:0.398:2	./.	./.	./.	./.	./.	./.
chr1	182640864	rs680277	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:100,65:32:166:0.394:2	0/1:82,54:32:136:0.397:2	./.	./.	0/1:116,69:31:185:0.373:2	./.	./.	./.	./.	./.	./.
chr1	182781273	rs2225789	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,63:31:145:0.434:2	./.	./.	./.	./.	./.	./.
chr1	182785865	rs1128759	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:30:43:0.372:2	./.	./.	./.	./.	./.	./.
chr1	182787920	rs10911141	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,8:30:22:0.364:2	./.	./.	./.	./.	./.	./.
chr1	182787951	rs10911142	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,9:30:29:0.310:2	./.	./.	./.	./.	./.	./.
chr1	182827882	rs73063097	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:30:57:0.368:2	./.	./.	./.	./.	./.
chr1	182850727	rs6677840	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,49:32:51:0.961:2	0/1:0,31:32:31:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,68:34:68:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,79:33:79:1.00:2
chr1	182850772	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.
chr1	182852312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.
chr1	182852702	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.
chr1	182852705	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.
chr1	182852761	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.
chr1	182908446	rs200451412	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,21:31:72:0.292:2	./.	./.	./.	./.	./.
chr1	182920465	rs11555585	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.	./.	./.	./.	./.	./.
chr1	182993025	rs10911194	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,28:29:65:0.431:2	0/1:29,19:32:48:0.396:2	0/1:5,3:32:8:0.375:2	0/1:53,48:31:101:0.475:2	0/1:0,81:30:81:1.00:2	0/1:54,54:31:108:0.500:2	0/1:38,45:30:83:0.542:2	0/1:55,38:31:93:0.409:2	0/1:1,75:32:76:0.987:2	0/1:33,13:33:46:0.283:2	./.
chr1	183072590	rs2296288	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,52:30:102:0.510:2	0/1:27,27:27:54:0.500:2	0/1:12,7:30:19:0.368:2	0/1:76,46:29:122:0.377:2	0/1:1,148:30:149:0.993:2	0/1:87,49:29:136:0.360:2	0/1:77,69:30:146:0.473:2	0/1:63,63:30:126:0.500:2	0/1:1,114:31:115:0.991:2	0/1:59,64:29:123:0.520:2	./.
chr1	183072701	rs2296289	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:31:79:0.443:2	0/1:38,27:30:65:0.415:2	./.	./.	./.	./.	./.	./.
chr1	183072734	rs115864963	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,31:32:70:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr1	183085755	rs20563	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,71:33:130:0.550:2	0/1:29,26:32:55:0.473:2	0/1:12,10:33:22:0.455:2	0/1:87,95:33:182:0.522:2	0/1:3,175:32:178:0.983:2	0/1:72,91:32:163:0.558:2	0/1:67,85:32:152:0.559:2	0/1:88,112:33:200:0.560:2	0/1:0,194:33:194:1.00:2	0/1:91,77:33:169:0.458:2	./.
chr1	183086757	rs2296292	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,56:29:144:0.389:2	0/1:45,28:29:73:0.384:2	0/1:9,7:29:16:0.438:2	0/1:51,59:30:110:0.536:2	0/1:4,158:29:162:0.975:2	0/1:98,68:30:166:0.410:2	0/1:96,95:30:191:0.497:2	0/1:112,81:30:193:0.420:2	0/1:0,143:30:143:1.00:2	0/1:84,43:29:127:0.339:2	./.
chr1	183093875	rs20557	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,45:30:103:0.437:2	0/1:23,25:30:48:0.521:2	0/1:3,6:30:9:0.667:2	0/1:59,53:29:112:0.473:2	0/1:1,98:30:99:0.990:2	0/1:57,57:29:114:0.500:2	0/1:56,54:30:110:0.491:2	0/1:62,60:30:122:0.492:2	0/1:2,98:31:100:0.980:2	0/1:44,47:30:91:0.516:2	./.
chr1	183094547	rs20558	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,42:31:104:0.404:2	0/1:28,15:30:43:0.349:2	0/1:4,5:30:9:0.556:2	0/1:69,51:31:120:0.425:2	0/1:0,120:30:120:1.00:2	0/1:65,55:30:120:0.458:2	0/1:62,72:30:134:0.537:2	0/1:81,81:30:162:0.500:2	0/1:0,141:31:141:1.00:2	0/1:33,46:31:79:0.582:2	./.
chr1	183096458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.
chr1	183096529	rs199739386	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,12:13:95:0.126:2	./.	0/1:110,16:11:126:0.127:2	./.	./.	./.	./.
chr1	183099560	rs20559	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:34:66:0.485:2	0/1:22,12:32:34:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	183099657	rs200305826	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,22:31:42:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr1	183102632	rs34995260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:32:78:0.462:2	./.	./.	./.
chr1	183105534	rs20560	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,74:31:148:0.500:2	0/1:53,48:29:101:0.475:2	0/1:18,14:31:32:0.438:2	0/1:92,102:30:194:0.526:2	0/1:1,149:30:150:0.993:2	0/1:106,91:30:197:0.462:2	0/1:102,92:31:194:0.474:2	0/1:102,92:30:195:0.474:2	0/1:0,186:31:186:1.00:2	0/1:105,67:30:172:0.390:2	./.
chr1	183105705	rs20561	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,40:30:77:0.519:2	0/1:19,18:32:37:0.486:2	./.	./.	0/1:0,96:31:96:1.00:2	0/1:45,58:31:103:0.563:2	0/1:63,61:30:124:0.492:2	0/1:46,60:31:106:0.566:2	0/1:0,123:32:123:1.00:2	0/1:25,52:31:77:0.675:2	./.
chr1	183155482	rs684527	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.
chr1	183184616	rs2274980	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:54,43:32:97:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr1	183184690	rs11586699	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,56:31:97:0.577:2	0/1:0,146:32:146:1.00:2	./.	./.	0/1:69,74:31:143:0.517:2	0/1:60,69:33:129:0.535:2	./.	./.
chr1	183187603	rs1129723	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:46,39:30:85:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr1	183191324	rs2296306	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,16:31:30:0.533:2	0/1:91,95:31:186:0.511:2	./.	./.	./.	./.	./.	./.	./.
chr1	183192304	rs1047980	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:33:14:0.500:2	0/1:47,48:31:95:0.505:2	./.	./.	./.	./.	./.	./.	./.
chr1	183192386	rs144572936	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,58:30:120:0.483:2	./.	./.	./.	./.	./.
chr1	183201330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.
chr1	183206573	rs1047981	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:32:29:0.379:2	0/1:101,85:32:186:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr1	183255908	rs41314643	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:27:25:0.440:2	./.	./.	./.	./.	./.	./.	./.	0/1:77,74:28:151:0.490:2
chr1	183481990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr1	183486859	rs789169	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,124:30:124:1.00:2	0/1:49,47:31:96:0.490:2	0/1:67,70:30:137:0.511:2	0/1:0,105:31:105:1.00:2	0/1:51,27:31:78:0.346:2	0/1:77,52:32:129:0.403:2
chr1	183495812	rs144712473	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,53:33:76:0.697:2
chr1	183498099	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr1	183532580	rs17849502	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.
chr1	183542323	rs17849501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:31:87:0.483:2	./.	./.
chr1	183542387	rs2274064	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,36:32:70:0.514:2	0/1:27,21:33:48:0.438:2	0/1:5,6:33:11:0.545:2	./.	0/1:69,75:32:144:0.521:2	0/1:4,107:32:111:0.964:2	./.	./.	0/1:72,70:34:142:0.493:2	0/1:76,40:33:116:0.345:2	./.
chr1	183592570	rs17488675	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,29:33:60:0.483:2	0/1:18,11:33:29:0.379:2	./.	./.	0/1:31,23:32:54:0.426:2	0/1:36,34:32:70:0.486:2	./.	./.	0/1:26,29:34:55:0.527:2	0/1:12,33:33:45:0.733:2	0/1:43,27:33:70:0.386:2
chr1	183616926	rs1174657	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:86,96:31:182:0.527:2	0/1:66,57:30:123:0.463:2	0/1:7,14:30:21:0.667:2	./.	0/1:79,63:30:142:0.444:2	0/1:88,85:30:173:0.491:2	./.	./.	0/1:112,77:32:189:0.407:2	0/1:93,75:30:168:0.446:2	0/1:98,92:31:190:0.484:2
chr1	183617105	rs1174658	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:101,94:32:195:0.482:2	0/1:94,98:33:193:0.510:2	0/1:11,17:32:28:0.607:2	./.	0/1:92,105:32:197:0.533:2	0/1:88,103:32:191:0.539:2	./.	./.	0/1:108,91:33:199:0.457:2	0/1:95,92:32:187:0.492:2	0/1:94,101:33:195:0.518:2
chr1	183617266	rs17436878	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,74:33:162:0.457:2	./.	0/1:70,53:32:123:0.431:2	0/1:81,74:32:155:0.477:2	./.	0/1:95,77:33:172:0.448:2	0/1:88,69:33:157:0.439:2	./.
chr1	183617457	rs185794943	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,36:33:73:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr1	183849869	rs12140352	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,29:32:74:0.392:2	./.	./.	./.	./.	./.	./.
chr1	183876182	rs11591089	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,17:31:55:0.309:2	./.	0/1:28,28:32:56:0.500:2	0/1:23,20:32:43:0.465:2	0/1:33,24:32:57:0.421:2
chr1	183909717	rs2296713	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,66:32:128:0.516:2	0/1:30,46:32:76:0.605:2	0/1:9,21:32:30:0.700:2	0/1:0,172:32:172:1.00:2	0/1:0,156:32:156:1.00:2	./.	./.	./.	0/1:73,65:33:138:0.471:2	./.	./.
chr1	183947633	rs11579482	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	184020945	rs2274432	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	0/1:1,8:28:9:0.889:2	0/1:5,6:32:11:0.545:2	0/1:1,3:32:4:0.750:2	./.
chr1	184023529	rs1046934	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,48:30:84:0.571:2	0/1:0,130:30:130:1.00:2	0/1:66,66:31:132:0.500:2	0/1:63,66:30:129:0.512:2	./.
chr1	184039735	rs56239295	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:31:10:1.00:2	./.	./.	./.	./.	./.
chr1	184663537	rs9425343	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,21:33:31:0.677:2	0/1:19,5:32:24:0.208:2	./.	0/1:0,25:32:25:1.00:2	0/1:16,8:32:24:0.333:2	0/1:9,14:32:23:0.609:2	0/1:15,4:34:19:0.211:2	0/1:0,18:32:18:1.00:2	0/1:23,19:33:42:0.452:2	0/1:0,43:32:43:1.00:2	./.
chr1	184663581	rs9425634	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,14:33:19:0.737:2	0/1:16,7:33:23:0.304:2	./.	0/1:0,15:33:15:1.00:2	0/1:9,6:32:15:0.400:2	0/1:12,11:33:23:0.478:2	0/1:13,7:33:20:0.350:2	0/1:0,28:33:28:1.00:2	0/1:17,27:35:44:0.614:2	0/1:0,41:33:41:1.00:2	./.
chr1	184675814	rs1062994	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,49:30:107:0.458:2	0/1:54,34:31:88:0.386:2	./.	0/1:3,166:29:169:0.982:2	0/1:94,83:29:177:0.469:2	0/1:96,87:29:183:0.475:2	0/1:110,85:30:196:0.436:2	0/1:0,192:29:192:1.00:2	0/1:100,70:29:170:0.412:2	0/1:3,116:30:119:0.975:2	./.
chr1	184677464	rs3736757	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,47:31:96:0.490:2	0/1:36,32:32:68:0.471:2	./.	0/1:1,123:31:124:0.992:2	0/1:51,52:31:103:0.505:2	0/1:64,54:31:118:0.458:2	0/1:55,46:32:101:0.455:2	0/1:0,100:31:100:1.00:2	0/1:69,57:32:126:0.452:2	0/1:0,83:32:83:1.00:2	./.
chr1	184680889	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.
chr1	184706804	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:128:0.032:2	./.
chr1	184764681	rs35545276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:32:35:0.457:2	./.	./.
chr1	184764824	rs35704242	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:32:25:0.440:2	./.	./.
chr1	184765000	rs12750174	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,25:31:65:0.385:2	./.	./.	./.	./.	./.
chr1	184765072	rs28927681	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:32:21:0.429:2	./.	./.
chr1	184801065	rs487675	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:33:58:0.982:2	0/1:2,28:33:30:0.933:2	./.	0/1:39,21:33:60:0.350:2	0/1:15,15:32:30:0.500:2	0/1:31,21:33:52:0.404:2	./.	./.	0/1:37,18:34:55:0.327:2	./.	./.
chr1	185069030	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:175:0.023:2	./.
chr1	185119609	rs78652979	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,7:16:49:0.143:2
chr1	185135745	rs950327	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,52:30:52:1.00:2	0/1:0,21:29:21:1.00:2	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.	./.	0/1:36,39:30:75:0.520:2	0/1:13,10:31:23:0.435:2	0/1:57,43:29:100:0.430:2
chr1	185137461	rs370174849	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,56:32:56:1.00:2	0/1:2,46:32:48:0.958:2	0/1:15,4:32:19:0.211:2	./.	./.	./.	./.	./.	0/1:98,18:32:116:0.155:2	0/1:107,21:30:128:0.164:2	0/1:104,22:32:126:0.175:2
chr1	185143721	rs10489579	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,41:33:95:0.432:2	0/1:33,25:32:58:0.431:2	./.	./.	./.	./.	./.	./.	0/1:54,46:33:100:0.460:2	0/1:27,45:31:72:0.625:2	0/1:65,65:33:130:0.500:2
chr1	185171869	rs6698109	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:57,56:30:115:0.496:2	0/1:23,23:31:46:0.500:2	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	0/1:66,59:32:125:0.472:2	0/1:62,44:30:106:0.415:2	0/1:55,69:30:124:0.556:2
chr1	185240474	rs12041704	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:4,101:32:105:0.962:2	0/1:0,39:32:39:1.00:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	0/1:64,53:32:117:0.453:2	0/1:52,30:33:82:0.366:2	0/1:82,57:31:139:0.410:2
chr1	185240506	rs149583877	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,30:31:95:0.316:2	./.	./.	./.
chr1	185270308	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.
chr1	185277169	rs41264598	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.
chr1	185703968	rs114170176	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:32:50:0.360:2	0/1:16,22:32:38:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	185897793	rs199966462	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.
chr1	185958737	rs7539719	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,59:33:110:0.536:2	0/1:38,34:32:72:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	185984517	rs6665753	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,29:29:44:0.659:2	0/1:21,30:28:51:0.588:2	0/1:1,6:29:7:0.857:2	0/1:0,70:29:70:1.00:2	0/1:2,80:28:82:0.976:2	./.	0/1:62,29:29:91:0.319:2	0/1:67,57:28:124:0.460:2	0/1:55,61:29:116:0.526:2	0/1:0,66:29:66:1.00:2	0/1:61,33:29:94:0.351:2
chr1	186024643	rs12067376	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,67:31:135:0.496:2	0/1:40,30:31:70:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186026474	rs12129650	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	0/1:10,10:34:20:0.500:2	0/1:34,11:31:45:0.244:2	0/1:19,19:33:38:0.500:2	./.	0/1:25,25:33:50:0.500:2
chr1	186031041	rs7522627	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,36:31:58:0.621:2	0/1:24,15:32:39:0.385:2	0/1:3,3:32:6:0.500:2	0/1:36,16:31:52:0.308:2	./.	0/1:0,50:31:50:1.00:2	0/1:23,14:31:37:0.378:2	0/1:41,32:31:73:0.438:2	0/1:34,50:33:84:0.595:2	./.	0/1:49,34:31:83:0.410:2
chr1	186050417	rs10798035	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:33:15:1.00:2	0/1:28,38:32:66:0.576:2	./.	0/1:46,42:32:88:0.477:2	0/1:45,24:32:69:0.348:2	0/1:47,57:32:104:0.548:2	0/1:53,46:33:99:0.465:2	./.	0/1:55,36:32:91:0.396:2
chr1	186052030	rs201802854	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,12:13:83:0.145:2	./.	./.	0/1:109,35:10:144:0.243:2	0/1:99,17:10:116:0.147:2	0/1:96,32:10:129:0.250:2	0/1:105,35:11:141:0.250:2	0/1:97,30:13:127:0.236:2	0/1:136,30:8:166:0.181:2	./.	0/1:102,22:18:124:0.177:2
chr1	186063472	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2
chr1	186064616	rs72720910	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,40:30:62:0.645:2	0/1:23,16:29:39:0.410:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186084541	rs144346158	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:31:38:0.526:2	./.	./.	./.	./.	./.
chr1	186092103	rs41317489	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,33:32:60:0.550:2	0/1:26,13:31:39:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186099180	rs41317491	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,79:33:178:0.444:2	0/1:55,59:33:114:0.518:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186101539	rs10911825	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,36:32:75:0.480:2	0/1:21,11:31:32:0.344:2	./.	./.	./.	./.	0/1:32,41:30:73:0.562:2	0/1:34,33:31:67:0.493:2	0/1:41,36:32:77:0.468:2	./.	0/1:38,52:31:90:0.578:2
chr1	186105864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.
chr1	186113727	rs6693069	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,60:28:132:0.458:2	0/1:53,49:30:102:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186134246	rs41317507	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,27:30:86:0.314:2	0/1:30,21:31:51:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186135989	rs142456335	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,73:31:173:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr1	186158725	rs151256828	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,51:33:119:0.429:2	0/1:40,32:33:72:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186273994	rs2273779	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,30:31:86:0.349:2	0/1:23,24:32:47:0.511:2	./.	0/1:46,41:31:87:0.471:2	./.	0/1:41,43:31:85:0.512:2	0/1:26,26:31:52:0.500:2	./.	0/1:0,79:33:79:1.00:2	0/1:33,36:32:69:0.522:2	./.
chr1	186275564	rs12128607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,23:32:65:0.354:2
chr1	186275760	rs16825150	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	0/1:10,8:32:18:0.444:2	0/1:3,7:31:10:0.700:2	./.	./.	./.
chr1	186276291	rs151267614	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:10,5:27:15:0.333:2	0/1:18,6:28:24:0.250:2	./.	./.	./.
chr1	186276451	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:27:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186276661	rs61831150	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,4:24:11:0.364:2	0/1:5,5:27:10:0.500:2	./.	0/1:4,4:26:8:0.500:2	./.	0/1:3,9:30:12:0.750:2	0/1:6,3:30:9:0.333:2	./.	0/1:0,8:27:8:1.00:2	./.	./.
chr1	186277088	rs68069719	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,60:33:60:1.00:2	0/1:1,59:32:60:0.983:2	0/1:0,44:34:44:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,49:32:49:1.00:2
chr1	186277527	rs75928540	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.	./.	./.
chr1	186277989	rs3737940	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,28:28:56:0.500:2	0/1:18,23:29:41:0.561:2	./.	0/1:24,21:30:45:0.467:2	./.	0/1:28,20:29:48:0.417:2	0/1:29,27:29:57:0.482:2	./.	0/1:3,66:29:69:0.957:2	0/1:25,20:29:45:0.444:2	./.
chr1	186281400	rs12134934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,26:32:64:0.406:2
chr1	186282016	rs80196755	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:33:60:0.467:2	./.	./.
chr1	186291512	rs10911846	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,78:30:175:0.446:2
chr1	186295259	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,7:29:158:0.044:2	./.	./.	./.
chr1	186301447	rs7526540	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,22:28:53:0.415:2
chr1	186302368	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:29:162:0.031:2	./.	./.	./.
chr1	186312469	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186316488	rs3753565	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,186:31:188:0.989:2	./.	0/1:100,91:32:191:0.476:2	0/1:99,93:31:192:0.484:2	./.	./.	./.
chr1	186321242	rs61744267	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:32:35:0.429:2	./.	0/1:16,10:30:26:0.385:2	0/1:17,10:32:27:0.370:2	./.	./.	0/1:15,11:29:26:0.423:2	./.
chr1	186326714	rs200477368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2
chr1	186340119	rs185362673	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186344714	rs371268243	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:29:109:0.459:2	./.	./.	./.
chr1	186363119	rs12084264	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,54:32:104:0.519:2	0/1:32,34:32:66:0.515:2	./.	0/1:57,44:32:101:0.436:2	./.	0/1:42,36:31:78:0.462:2	0/1:28,39:33:67:0.582:2	./.	0/1:0,112:33:112:1.00:2	0/1:33,39:32:72:0.542:2	./.
chr1	186418600	rs12407957	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,17:33:55:0.309:2	0/1:18,12:32:30:0.400:2	./.	./.	./.	./.	./.	./.	0/1:0,43:32:43:1.00:2	./.	./.
chr1	186643802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.
chr1	186646035	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,3:34:74:0.041:2	./.	./.	./.
chr1	186648197	rs5277	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,36:33:82:0.439:2	./.	0/1:51,24:33:75:0.320:2	0/1:36,31:33:67:0.463:2	./.	./.	0/1:23,22:34:45:0.489:2	0/1:37,41:33:78:0.526:2
chr1	186919863	rs6661772	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,22:29:34:0.647:2	./.	./.	./.	./.	0/1:18,29:30:47:0.617:2	./.
chr1	186946869	rs28395831	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186946912	rs2307198	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:33:93:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,95:33:95:1.00:2	0/1:41,30:32:71:0.423:2	0/1:0,101:32:101:1.00:2	0/1:0,57:32:57:1.00:2	0/1:3,86:32:89:0.966:2	0/1:0,116:33:116:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,130:33:130:1.00:2
chr1	192547396	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	192627431	rs41300867	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:31:51:0.549:2	./.	./.	./.	./.
chr1	192989594	rs72738589	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:32:51:0.353:2	./.	./.	./.	0/1:38,49:32:87:0.563:2	0/1:50,21:33:71:0.296:2
chr1	193054088	rs72740218	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	0/1:2,5:33:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	193054154	rs10921309	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:33:9:0.444:2	0/1:9,3:33:12:0.250:2	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.	./.
chr1	193074651	rs10921310	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:1,5:31:6:0.833:2	0/1:0,2:30:2:1.00:2	0/1:0,10:30:10:1.00:2	./.	0/1:7,3:31:10:0.300:2	0/1:0,6:32:6:1.00:2	0/1:7,6:32:13:0.462:2
chr1	193091379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:30:127:0.031:2	./.	./.	./.	./.	./.	./.
chr1	193150021	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:35:64:0.063:2	./.
chr1	193150219	rs28930674	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:29:29:0.483:2	./.	./.	./.	0/1:8,6:29:14:0.429:2	0/1:29,25:28:54:0.463:2
chr1	196227526	rs977157	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,93:31:93:1.00:2	0/1:1,114:32:115:0.991:2	0/1:0,106:33:106:1.00:2	0/1:0,87:32:88:1.00:2	0/1:0,110:31:110:1.00:2
chr1	196300374	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:172:0.024:2	./.	./.	./.
chr1	196642233	rs800292	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,32:31:87:0.368:2	0/1:25,30:32:55:0.545:2	./.	0/1:52,34:31:86:0.395:2	./.	0/1:45,32:30:77:0.416:2	./.	0/1:68,37:30:105:0.352:2	0/1:71,45:32:116:0.388:2	0/1:49,29:30:78:0.372:2	./.
chr1	196654324	rs1061147	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,118:33:119:0.992:2	0/1:0,78:33:78:1.00:2	0/1:1,17:32:18:0.944:2	0/1:0,132:33:132:1.00:2	0/1:93,55:32:148:0.372:2	0/1:87,86:33:174:0.497:2	0/1:1,132:33:133:0.992:2	0/1:2,150:32:152:0.987:2	0/1:102,93:34:195:0.477:2	0/1:75,49:32:124:0.395:2	0/1:92,89:32:181:0.492:2
chr1	196659237	rs1061170	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:31:164:1.00:2	0/1:0,122:31:122:1.00:2	0/1:0,16:30:16:1.00:2	0/1:2,193:30:195:0.990:2	0/1:75,43:30:118:0.364:2	0/1:118,81:30:199:0.407:2	0/1:2,91:31:94:0.978:2	0/1:0,152:30:152:1.00:2	0/1:124,74:32:198:0.374:2	0/1:106,71:31:177:0.401:2	0/1:101,96:31:197:0.487:2
chr1	196682947	rs2274700	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,151:32:153:0.987:2	0/1:1,103:32:104:0.990:2	0/1:24,17:31:41:0.415:2	0/1:1,185:31:186:0.995:2	./.	0/1:98,97:32:195:0.497:2	0/1:7,145:32:152:0.954:2	./.	0/1:117,81:33:198:0.409:2	0/1:106,86:32:192:0.448:2	0/1:110,85:32:195:0.436:2
chr1	196695675	rs143237092	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,56:30:112:0.500:2	./.	./.	./.	./.	./.	./.
chr1	196695742	rs3753396	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:33:12:0.583:2	./.	0/1:30,32:32:62:0.516:2	./.	./.	0/1:2,87:32:89:0.978:2	./.	./.	./.
chr1	196709774	rs1065489	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:28:14:0.571:2	./.	0/1:50,47:30:97:0.485:2	./.	./.	0/1:2,123:30:125:0.984:2	./.	./.	./.
chr1	196709816	rs149474608	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,64:31:152:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr1	196709857	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	196712586	rs61822181	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,30:33:123:0.244:2	0/1:50,20:32:70:0.286:2	./.	0/1:80,30:32:110:0.273:2	0/1:55,15:31:70:0.214:2	./.	./.	0/1:69,25:31:94:0.266:2	0/1:72,32:34:104:0.308:2	0/1:87,20:32:107:0.187:2	./.
chr1	196715008	rs41265217	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,17:31:195:0.087:2	./.	./.	0/1:186,11:33:197:0.056:2	./.	./.	./.
chr1	196716356	rs61743622	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr1	196744082	rs191734103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:35:155:0.026:2	./.	./.	./.
chr1	196748334	rs61737523	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.
chr1	196757392	rs400344	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,50:33:50:1.00:2	0/1:38,19:32:57:0.333:2	./.	./.	0/1:0,50:33:50:1.00:2	0/1:71,22:32:93:0.237:2	0/1:53,19:33:72:0.264:2	./.
chr1	196757427	rs5002710	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	./.	./.
chr1	196757437	rs5002711	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.	./.	./.	./.	./.
chr1	196759282	rs138675433	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr1	196759347	rs149352569	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,5:30:138:0.036:2	./.	./.	0/1:35,37:31:72:0.514:2	./.	./.	./.
chr1	196763707	rs481759	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,11:31:48:0.229:2	./.	./.	0/1:3,11:31:14:0.786:2	./.	./.	./.
chr1	196797238	rs425757	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,8:31:11:0.727:2	0/1:1,3:31:4:0.750:2	./.	0/1:1,15:31:16:0.938:2	0/1:60,6:30:66:0.091:2	./.	./.	0/1:92,17:30:109:0.156:2	0/1:88,15:32:103:0.146:2	0/1:68,10:32:78:0.128:2	./.
chr1	196797244	rs113811987	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:32:10:0.700:2	./.	./.	0/1:1,12:33:13:0.923:2	0/1:61,4:31:65:0.062:2	./.	./.	0/1:97,14:32:111:0.126:2	0/1:90,15:34:105:0.143:2	0/1:73,7:32:80:0.088:2	./.
chr1	196797292	rs388862	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,2:33:3:0.667:2	./.	0/1:3,3:32:6:0.500:2	0/1:81,6:32:87:0.069:2	./.	./.	0/1:177,6:32:185:0.033:2	0/1:127,5:33:132:0.038:2	./.	./.
chr1	196799691	rs12406079	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:32:26:0.654:2	./.	0/1:133,64:31:198:0.325:2	./.	./.	0/1:119,75:32:194:0.387:2	./.	./.	./.
chr1	196801042	rs4230	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,167:32:178:0.938:2	0/1:8,113:32:121:0.934:2	0/1:1,35:31:36:0.972:2	0/1:11,180:32:191:0.942:2	0/1:105,93:31:198:0.470:2	0/1:18,5:32:23:0.217:2	0/1:30,6:29:36:0.167:2	0/1:132,65:31:198:0.330:2	0/1:123,75:32:198:0.379:2	0/1:112,75:32:187:0.401:2	./.
chr1	196801078	rs414628	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,160:31:169:0.947:2	0/1:8,105:31:113:0.929:2	0/1:2,41:30:43:0.953:2	0/1:8,163:30:171:0.953:2	0/1:101,88:30:189:0.466:2	0/1:21,4:31:25:0.160:2	0/1:31,10:31:41:0.244:2	0/1:118,70:31:188:0.372:2	0/1:110,84:32:195:0.433:2	0/1:120,75:31:195:0.385:2	./.
chr1	196871608	rs200977143	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.
chr1	196882003	rs2478007	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	0/1:193,4:32:197:0.020:2	./.	./.
chr1	196884258	rs150845796	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,22:30:69:0.319:2	./.	0/1:114,55:30:170:0.325:2	./.	./.	0/1:108,74:30:182:0.407:2	./.	./.	./.
chr1	196887397	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:33:175:0.029:2	./.	./.	./.
chr1	196887406	rs12744282	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.
chr1	196887457	rs10494745	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,87:31:192:0.453:2	./.	./.	./.	0/1:91,96:33:187:0.513:2	./.	./.
chr1	196918741	rs79351096	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,92:30:188:0.489:2	./.	./.	./.
chr1	196920148	rs4085749	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,41:30:97:0.423:2	./.	./.	./.	./.	0/1:63,45:30:108:0.417:2	0/1:54,34:29:88:0.386:2	./.
chr1	196946729	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.	./.
chr1	196946775	rs9427662	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:32:86:0.465:2	./.	./.	./.	./.
chr1	196952169	rs143503904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:30:172:0.029:2	./.	./.	./.	./.	./.
chr1	196952173	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:30:173:0.029:2	./.	./.	./.	./.	./.
chr1	196965193	rs139017763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,18:31:74:0.243:2	./.	./.	./.
chr1	196973806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.
chr1	197009798	rs5998	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,50:32:96:0.521:2	0/1:40,37:32:77:0.481:2	./.	0/1:45,35:32:80:0.438:2	0/1:0,74:32:74:1.00:2	0/1:0,138:33:138:1.00:2	./.	./.
chr1	197026289	rs17514281	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,57:32:121:0.471:2	./.	./.	./.	./.	./.
chr1	197030201	rs5997	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:27:36:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,5:28:5:1.00:2	0/1:1,33:29:34:0.971:2	0/1:0,25:27:25:1.00:2	0/1:0,37:27:37:1.00:2	0/1:16,10:28:26:0.385:2	0/1:0,17:25:17:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,27:27:27:1.00:2	0/1:0,44:26:44:1.00:2
chr1	197031021	rs6003	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:91:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,8:32:8:1.00:2	0/1:1,120:31:121:0.992:2	0/1:1,85:32:86:0.988:2	0/1:1,107:31:108:0.991:2	0/1:46,59:32:105:0.562:2	0/1:0,131:32:131:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,81:32:81:1.00:2	0/1:1,130:32:131:0.992:2
chr1	197061086	rs36004306	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.	./.	./.	./.	./.
chr1	197070372	rs41299627	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2	./.	./.	./.	./.	./.	./.
chr1	197070442	rs3762271	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,18:33:51:0.353:2	0/1:26,17:32:43:0.395:2	0/1:0,8:32:8:1.00:2	0/1:61,29:32:90:0.322:2	0/1:29,23:32:52:0.442:2	0/1:0,57:31:58:1.00:2	./.	./.	./.	0/1:1,51:32:52:0.981:2	0/1:0,71:32:71:1.00:2
chr1	197070697	rs41310927	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,22:32:35:0.629:2	0/1:9,8:33:17:0.471:2	./.	0/1:6,13:33:19:0.684:2	0/1:18,14:33:32:0.438:2	0/1:2,27:31:29:0.931:2	./.	./.	./.	0/1:2,19:32:21:0.905:2	0/1:0,37:32:37:1.00:2
chr1	197070707	rs41308365	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,23:32:37:0.622:2	0/1:7,6:32:13:0.462:2	0/1:0,3:33:3:1.00:2	0/1:6,11:31:17:0.647:2	0/1:20,15:32:35:0.429:2	0/1:2,25:30:27:0.926:2	./.	./.	./.	0/1:0,18:33:18:1.00:2	0/1:0,39:31:39:1.00:2
chr1	197070776	rs10922162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,42:33:66:0.636:2	./.	./.
chr1	197070815	rs1412640	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,11:31:11:1.00:2	0/1:1,73:32:74:0.986:2	0/1:0,62:32:62:1.00:2	0/1:1,94:32:95:0.989:2	0/1:39,28:32:67:0.418:2	0/1:0,98:33:98:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,132:33:132:1.00:2
chr1	197070901	rs964201	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:33:104:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,70:33:70:1.00:2	./.
chr1	197071758	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:32:198:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	197072420	rs41310925	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,58:33:126:0.460:2	0/1:61,38:32:99:0.384:2	0/1:1,27:33:28:0.964:2	0/1:82,93:32:175:0.531:2	0/1:87,88:32:175:0.503:2	0/1:0,193:32:193:1.00:2	./.	./.	./.	0/1:2,145:33:147:0.986:2	0/1:2,184:33:186:0.989:2
chr1	197073196	rs41299623	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:32:61:0.377:2	./.	./.	./.	./.
chr1	197073932	rs2878749	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,28:32:54:0.519:2	0/1:21,21:32:42:0.500:2	0/1:0,7:32:7:1.00:2	0/1:22,26:32:48:0.542:2	0/1:12,18:32:30:0.600:2	0/1:1,46:32:47:0.979:2	./.	./.	./.	0/1:0,32:32:32:1.00:2	0/1:0,68:31:68:1.00:2
chr1	197091537	rs4915337	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:81:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,120:31:121:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,97:31:97:1.00:2	0/1:55,49:31:104:0.471:2	0/1:0,104:31:104:1.00:2	0/1:0,108:31:109:1.00:2	0/1:0,62:30:63:1.00:2	0/1:0,111:32:112:1.00:2
chr1	197094030	rs6676084	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,39:31:81:0.481:2	0/1:15,19:32:34:0.559:2	./.	0/1:51,38:32:89:0.427:2	0/1:28,29:32:57:0.509:2	./.	0/1:22,19:31:41:0.463:2	0/1:2,63:31:65:0.969:2	0/1:41,45:32:86:0.523:2	./.	./.
chr1	197108946	rs17550662	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,10:32:49:0.204:2	./.	./.	./.	0/1:67,50:32:117:0.427:2	./.	./.
chr1	197112533	rs6677082	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,55:32:55:1.00:2	0/1:16,22:33:38:0.579:2	0/1:3,45:32:48:0.938:2	0/1:0,50:33:50:1.00:2	0/1:1,50:33:51:0.980:2	0/1:0,76:33:76:1.00:2
chr1	197113110	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,32:30:91:0.352:2	./.	./.	./.	./.	./.
chr1	197128726	rs12128631	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,46:31:96:0.479:2	./.	./.
chr1	197390368	rs3902057	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,8:32:8:1.00:2	0/1:1,65:32:66:0.985:2	0/1:0,49:32:49:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,66:32:66:1.00:2
chr1	197390491	rs142224492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,35:31:100:0.350:2	./.	./.	./.	./.	./.
chr1	197396762	rs151104285	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,27:31:50:0.540:2	./.	./.	./.	./.	./.	./.
chr1	197411362	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,4:31:177:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	197446702	rs1135810	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,108:32:109:0.991:2	0/1:1,91:32:92:0.989:2	0/1:9,8:32:17:0.471:2	./.	0/1:2,108:31:110:0.982:2	./.	0/1:72,47:31:119:0.395:2	0/1:110,84:31:194:0.433:2	0/1:94,96:33:190:0.505:2	0/1:61,102:32:163:0.626:2	./.
chr1	197446906	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.
chr1	197480927	rs12142127	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:32:25:0.440:2	./.	0/1:1,108:32:109:0.991:2	./.	./.	0/1:70,87:32:157:0.554:2	0/1:78,96:33:174:0.552:2	0/1:46,45:32:91:0.495:2	./.
chr1	197480986	rs10494755	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,82:32:169:0.485:2	0/1:82,102:33:184:0.554:2	./.	./.
chr1	197482023	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.
chr1	197704717	rs17641524	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,15:31:16:0.938:2	./.	./.	./.	./.	0/1:27,13:32:40:0.325:2	./.
chr1	197872019	rs4539165	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:2,4:31:6:0.667:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr1	197874949	rs2270763	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,77:32:185:0.416:2	0/1:1,153:31:154:0.994:2	0/1:94,89:31:183:0.486:2	0/1:114,84:32:198:0.424:2	0/1:5,190:32:195:0.974:2	0/1:1,155:33:156:0.994:2	0/1:0,124:32:124:1.00:2	./.
chr1	197890492	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.
chr1	197896728	rs12046958	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,52:30:83:0.627:2	0/1:27,30:29:57:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,104:30:104:1.00:2
chr1	198214462	rs12046935	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,16:30:51:0.314:2	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.
chr1	198225478	rs72731918	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	198665917	rs17612648	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:30:75:0.493:2	0/1:14,28:30:42:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	198671653	rs4915154	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:31:90:0.461:2	./.	./.	./.	./.	./.
chr1	198703306	rs6683595	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,34:31:85:0.400:2	./.	./.	./.	./.	./.	0/1:47,31:32:78:0.397:2	./.
chr1	198704294	rs7540378	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,85:28:191:0.445:2	./.	./.	./.	./.	./.	0/1:68,52:29:120:0.433:2	./.
chr1	198711078	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:34:189:0.021:2	./.	./.
chr1	198719731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.
chr1	200008822	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:29:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	200017586	rs2821368	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:28:11:0.364:2	0/1:41,49:30:90:0.544:2	./.	./.	./.	./.	0/1:35,35:31:70:0.500:2	./.	./.
chr1	200143281	rs1060060	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:0,24:31:24:1.00:2	./.	./.	./.	./.	0/1:19,24:31:43:0.558:2	0/1:37,24:31:61:0.393:2	./.	0/1:18,14:33:32:0.438:2	0/1:30,26:33:56:0.464:2
chr1	200182732	rs116503230	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	0/1:9,4:31:13:0.308:2	./.	./.
chr1	200182733	rs80112494	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:29:13:0.308:2	0/1:10,4:23:14:0.286:2	./.	./.
chr1	200182834	rs12028402	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:85,94:28:179:0.525:2	0/1:57,39:28:96:0.406:2	0/1:15,10:28:25:0.400:2	./.	./.	0/1:1,189:28:190:0.995:2	./.	0/1:103,89:28:192:0.464:2	0/1:109,80:29:190:0.423:2	0/1:105,92:28:197:0.467:2	./.
chr1	200182945	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.
chr1	200183398	rs10919847	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:70,74:32:144:0.514:2	0/1:36,39:31:75:0.520:2	0/1:11,13:32:24:0.542:2	./.	./.	0/1:1,188:31:189:0.995:2	0/1:140,6:31:148:0.041:2	0/1:90,97:31:187:0.519:2	0/1:94,80:33:174:0.460:2	0/1:54,70:32:124:0.565:2	./.
chr1	200183460	rs10919848	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:59,77:31:137:0.566:2	0/1:41,39:32:80:0.488:2	0/1:9,9:31:18:0.500:2	./.	./.	0/1:2,138:31:140:0.986:2	./.	0/1:70,57:32:128:0.449:2	0/1:68,72:33:140:0.514:2	0/1:63,67:32:130:0.515:2	./.
chr1	200311868	rs2790109	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,28:32:72:0.389:2	0/1:20,13:32:33:0.394:2	0/1:0,6:32:6:1.00:2	0/1:1,105:32:106:0.991:2	0/1:81,42:32:124:0.341:2	./.	0/1:0,78:32:78:1.00:2	0/1:0,114:32:114:1.00:2	0/1:74,49:33:123:0.398:2	0/1:54,43:33:97:0.443:2	0/1:1,93:32:96:0.989:2
chr1	200376608	rs74547203	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.	./.	./.
chr1	200376645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr1	200376695	rs35342093	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,67:32:123:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr1	200522566	rs12120084	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,21:30:34:0.618:2	./.	./.	0/1:87,107:31:195:0.552:2	0/1:96,97:31:193:0.503:2	0/1:106,86:30:192:0.448:2	0/1:97,90:32:187:0.481:2	./.	0/1:94,94:31:188:0.500:2
chr1	200534248	rs7543730	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,38:32:96:0.396:2	0/1:42,26:32:68:0.382:2	0/1:8,4:31:12:0.333:2	0/1:100,51:32:151:0.338:2	0/1:35,31:31:66:0.470:2	0/1:94,42:30:136:0.309:2	0/1:45,35:31:80:0.438:2	0/1:73,36:31:109:0.330:2	0/1:83,74:32:157:0.471:2	0/1:0,81:32:81:1.00:2	0/1:66,53:32:119:0.445:2
chr1	200534255	rs77157287	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,39:33:103:0.379:2	0/1:42,25:32:67:0.373:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	200549451	rs115265657	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,51:33:129:0.395:2
chr1	200558363	rs6665951	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:33:110:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,142:33:142:1.00:2	0/1:46,38:32:84:0.452:2	0/1:70,76:32:146:0.521:2	0/1:0,97:33:97:1.00:2	0/1:0,141:32:141:1.00:2	0/1:78,62:34:140:0.443:2	0/1:1,142:33:143:0.993:2	0/1:3,176:33:180:0.983:2
chr1	200567476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.
chr1	200571102	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	200574959	rs2808238	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,38:32:80:0.481:2	0/1:18,27:32:45:0.600:2	0/1:7,6:33:13:0.462:2	0/1:51,51:32:102:0.500:2	0/1:43,20:32:63:0.317:2	0/1:48,49:31:97:0.505:2	0/1:39,32:32:71:0.451:2	0/1:43,51:32:94:0.543:2	0/1:53,68:33:121:0.562:2	./.	./.
chr1	200587170	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:27:187:0.027:2	./.	./.	./.	./.	./.
chr1	200618238	rs6665604	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:30:110:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,137:30:137:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,126:30:126:1.00:2	0/1:97,83:30:180:0.461:2
chr1	200635550	rs3795634	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,26:30:65:0.400:2	./.	./.	./.	./.	./.	0/1:50,30:30:80:0.375:2	./.
chr1	200635560	rs3795633	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,28:31:70:0.400:2	./.	./.	./.	./.	./.	0/1:53,33:31:86:0.384:2	./.
chr1	200635617	rs78479136	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,47:31:93:0.505:2	0/1:26,34:31:60:0.567:2	0/1:7,6:31:13:0.462:2	0/1:58,58:30:116:0.500:2	./.	./.	0/1:54,50:32:104:0.481:2	./.	./.	./.	./.
chr1	200635723	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr1	200709043	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:34:171:0.024:2
chr1	200801935	rs41306231	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,55:30:118:0.466:2	./.	./.
chr1	200818318	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,10:15:38:0.263:2	./.	./.
chr1	200818980	rs6674599	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:30:109:0.477:2	./.
chr1	200826515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.
chr1	200867492	rs2271018	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,42:28:97:0.433:2	0/1:59,46:29:105:0.438:2	./.	./.	0/1:70,66:28:136:0.485:2	./.	0/1:38,24:29:62:0.387:2	./.
chr1	200878026	rs41313912	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:30:55:0.418:2	./.	./.	./.	./.	./.	./.
chr1	200880711	rs200496052	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:109:0.038:2	./.	./.	./.
chr1	200880869	rs45547233	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,15:25:31:0.484:2	0/1:17,19:26:36:0.528:2	./.	0/1:26,5:28:31:0.161:2	./.	0/1:35,20:29:55:0.364:2	./.	./.	./.	./.	./.
chr1	200881172	rs296521	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	0/1:3,10:28:13:0.769:2	./.	0/1:0,8:26:8:1.00:2	./.	0/1:1,7:28:8:0.875:2	./.
chr1	200956288	rs2275485	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,23:31:42:0.548:2	0/1:10,14:30:24:0.583:2	./.	0/1:38,23:31:61:0.377:2	./.	0/1:29,15:29:44:0.341:2	./.	./.	./.	./.	./.
chr1	200957412	rs76094226	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,41:32:97:0.423:2	./.	./.	./.	./.	./.	./.
chr1	200957450	rs200705792	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,8:16:75:0.107:2	./.	./.	./.	./.	./.	./.	./.
chr1	200957691	rs2297912	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,17:33:18:0.944:2	0/1:1,6:32:7:0.857:2	./.	0/1:2,18:33:20:0.900:2	./.	0/1:7,17:33:24:0.708:2	./.	./.	./.	./.	./.
chr1	200957697	rs12142704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:28:5:1.00:2	./.	./.
chr1	200959302	rs2297911	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,50:31:130:0.385:2	0/1:49,56:31:105:0.533:2	./.	0/1:94,74:31:168:0.440:2	./.	0/1:93,91:30:184:0.495:2	./.	./.	./.	./.	./.
chr1	200969921	rs6692427	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,14:33:39:0.359:2	0/1:20,14:32:34:0.412:2	./.	0/1:43,35:32:78:0.449:2	./.	0/1:40,50:32:90:0.556:2	./.	./.	./.	./.	./.
chr1	201009182	rs12139527	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,37:31:88:0.420:2	0/1:27,25:30:52:0.481:2	./.	0/1:56,23:30:79:0.291:2	./.	0/1:36,43:30:79:0.544:2	./.	./.	./.	./.	./.
chr1	201012484	rs13374149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,72:32:184:0.391:2	./.	./.	./.
chr1	201012597	rs41267497	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	0/1:51,36:32:87:0.414:2	0/1:46,36:32:82:0.439:2	./.	0/1:27,61:33:88:0.693:2	./.	./.
chr1	201013535	rs183195890	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.
chr1	201017805	rs79011683	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,9:22:55:0.164:2	./.	./.	0/1:55,27:20:82:0.329:2	0/1:69,41:18:111:0.373:2	0/1:38,26:16:64:0.406:2	0/1:59,39:17:98:0.398:2	0/1:55,38:17:93:0.409:2	0/1:54,24:16:78:0.308:2	0/1:37,12:25:49:0.245:2	0/1:28,12:21:40:0.300:2
chr1	201022411	rs142184434	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,83:31:156:0.532:2	./.	./.	./.	./.
chr1	201038687	rs7415038	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:32:20:1.00:2	0/1:85,81:33:166:0.488:2	./.	0/1:95,82:32:177:0.463:2	0/1:117,75:32:192:0.391:2	0/1:107,82:33:189:0.434:2	0/1:76,83:33:159:0.522:2	0/1:66,56:32:122:0.459:2	0/1:62,47:32:109:0.431:2
chr1	201047062	rs4915476	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,49:31:90:0.544:2	0/1:25,25:32:50:0.500:2	0/1:3,8:32:11:0.727:2	./.	./.	0/1:68,65:31:133:0.489:2	0/1:111,82:31:193:0.425:2	./.	0/1:51,49:31:100:0.490:2	0/1:56,49:31:105:0.467:2	./.
chr1	201047075	rs4915477	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,50:28:98:0.510:2	0/1:25,31:28:56:0.554:2	0/1:0,10:29:10:1.00:2	0/1:0,151:28:151:1.00:2	./.	0/1:72,74:28:146:0.507:2	0/1:107,84:28:192:0.440:2	0/1:125,74:29:199:0.372:2	0/1:55,57:29:112:0.509:2	0/1:1,104:29:105:0.990:2	0/1:55,50:27:105:0.476:2
chr1	201047111	rs9427714	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,4:34:19:0.211:2	0/1:98,86:33:184:0.467:2	./.	./.	./.	0/1:122,66:32:189:0.351:2	./.	0/1:61,48:33:109:0.440:2	0/1:64,50:32:114:0.439:2
chr1	201047135	rs16847674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,79:30:163:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr1	201052310	rs12742169	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,43:30:110:0.391:2	./.	./.	./.	0/1:57,55:30:112:0.491:2	./.	0/1:45,48:29:93:0.516:2	0/1:40,35:30:75:0.467:2
chr1	201052312	rs12742170	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,43:30:111:0.387:2	./.	./.	./.	0/1:60,55:29:115:0.478:2	./.	0/1:45,48:29:93:0.516:2	0/1:39,35:29:74:0.473:2
chr1	201060865	rs2296383	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,7:31:23:0.304:2	0/1:4,141:31:145:0.972:2	./.	./.	./.	./.	./.	0/1:62,46:31:108:0.426:2	0/1:67,57:31:124:0.460:2
chr1	201079344	rs12406479	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,60:33:163:0.368:2	./.	./.	./.	./.	./.	./.
chr1	201112981	rs8158	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,50:32:51:0.980:2	0/1:0,42:32:42:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:1,88:32:90:0.989:2	0/1:1,109:32:110:0.991:2	0/1:1,132:33:133:0.992:2	0/1:0,129:32:129:1.00:2	0/1:0,92:33:92:1.00:2	0/1:43,39:33:82:0.476:2	0/1:59,45:32:104:0.433:2
chr1	201122947	rs1925361	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:30:86:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,14:28:14:1.00:2	0/1:89,69:30:158:0.437:2	0/1:0,177:29:178:1.00:2	0/1:0,139:28:139:1.00:2	0/1:0,156:29:156:1.00:2	0/1:0,186:29:186:1.00:2	0/1:0,126:30:126:1.00:2	0/1:58,59:29:117:0.504:2	0/1:0,106:28:106:1.00:2
chr1	201162411	rs12089471	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,33:32:33:1.00:2	0/1:0,15:32:15:1.00:2	0/1:2,5:30:7:0.714:2	./.	./.	0/1:17,12:31:29:0.414:2	0/1:13,17:31:30:0.567:2	0/1:3,25:31:28:0.893:2	0/1:15,11:33:26:0.423:2	./.	./.
chr1	201163358	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,42:30:76:0.553:2	0/1:11,21:29:32:0.656:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201165002	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201166383	rs4915221	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:0,93:31:93:1.00:2	0/1:0,149:31:149:1.00:2	0/1:48,42:31:90:0.467:2	0/1:82,61:31:143:0.427:2	./.	0/1:55,35:31:91:0.389:2	0/1:0,68:31:68:1.00:2	0/1:0,56:32:56:1.00:2
chr1	201166435	rs11589317	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:27:41:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,38:28:38:1.00:2
chr1	201168499	rs1534057	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,31:31:64:0.484:2	./.	./.	./.	./.	./.	./.
chr1	201174240	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201175227	rs832156	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,38:31:39:0.974:2	0/1:0,19:32:19:1.00:2	./.	0/1:54,37:31:91:0.407:2	0/1:40,41:31:81:0.506:2	0/1:49,37:31:86:0.430:2	0/1:33,31:31:64:0.484:2	0/1:60,30:32:90:0.333:2	0/1:46,32:32:78:0.410:2	./.	0/1:0,90:31:90:1.00:2
chr1	201175274	rs9651057	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:31:24:0.542:2	0/1:6,9:29:15:0.600:2	0/1:0,2:30:2:1.00:2	0/1:22,34:30:56:0.607:2	0/1:22,12:31:34:0.353:2	0/1:27,30:31:57:0.526:2	0/1:22,20:31:42:0.476:2	0/1:1,39:30:40:0.975:2	0/1:15,27:31:42:0.643:2	0/1:0,39:31:39:1.00:2	./.
chr1	201181920	rs12060924	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,16:29:44:0.364:2	0/1:13,9:31:22:0.409:2	./.	0/1:28,31:30:59:0.525:2	0/1:28,12:30:40:0.300:2	0/1:24,15:29:39:0.385:2	0/1:20,19:30:39:0.487:2	./.	0/1:22,27:31:49:0.551:2	./.	0/1:33,31:31:64:0.484:2
chr1	201181994	rs6688782	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:32:76:0.467:2
chr1	201182056	rs182559666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:31:43:0.442:2	./.	./.	./.	./.	./.
chr1	201183363	rs2282415	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,9:31:17:0.529:2	0/1:5,8:31:13:0.615:2	./.	0/1:26,15:32:41:0.366:2	0/1:8,14:32:22:0.636:2	0/1:17,12:32:29:0.414:2	0/1:20,11:31:31:0.355:2	./.	0/1:16,16:31:32:0.500:2	./.	0/1:21,14:32:35:0.400:2
chr1	201183402	rs1568810	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,11:32:29:0.379:2	0/1:8,10:31:18:0.556:2	./.	0/1:37,27:31:64:0.422:2	0/1:21,25:31:46:0.543:2	0/1:30,13:31:43:0.302:2	0/1:31,21:30:52:0.404:2	./.	0/1:31,26:32:57:0.456:2	./.	0/1:33,25:30:58:0.431:2
chr1	201184275	rs2275673	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,47:32:120:0.392:2	0/1:38,51:32:89:0.573:2	./.	0/1:96,70:32:166:0.422:2	0/1:110,76:31:186:0.409:2	0/1:84,88:31:172:0.512:2	0/1:81,86:32:167:0.515:2	./.	0/1:68,61:32:129:0.473:2	./.	0/1:70,54:32:124:0.435:2
chr1	201185752	rs143770388	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:30:62:0.500:2	./.	./.	./.
chr1	201187764	rs10920144	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,14:29:14:1.00:2	./.	0/1:0,24:27:24:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,14:28:14:1.00:2
chr1	201190732	rs3738269	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:29:16:0.500:2	0/1:83,59:30:142:0.415:2	0/1:94,84:30:179:0.472:2	0/1:60,70:30:130:0.538:2	0/1:62,62:30:124:0.500:2	0/1:67,92:30:160:0.579:2	0/1:59,63:31:122:0.516:2	0/1:1,118:30:119:0.992:2	./.
chr1	201191944	rs114765060	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2
chr1	201195119	rs3738270	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,64:30:66:0.970:2	0/1:0,25:31:25:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,79:29:79:1.00:2	0/1:29,43:30:72:0.597:2	0/1:19,23:29:42:0.548:2	0/1:1,86:29:87:0.989:2	0/1:0,72:31:72:1.00:2	./.	0/1:27,15:31:42:0.357:2
chr1	201196198	rs139902323	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.	./.
chr1	201197471	rs3753973	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,32:30:60:0.533:2	0/1:25,12:30:38:0.324:2	./.	0/1:57,38:30:95:0.400:2	0/1:51,31:30:82:0.378:2	./.	./.	0/1:2,77:30:79:0.975:2	0/1:50,28:31:78:0.359:2	./.	./.
chr1	201252866	rs2268147	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,83:30:175:0.474:2	0/1:120,75:30:195:0.385:2	./.	./.	./.	./.
chr1	201282573	rs35507614	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,86:29:173:0.497:2	0/1:86,87:29:173:0.503:2	./.	./.	./.	0/1:99,65:28:164:0.396:2
chr1	201285712	rs7514146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,90:31:180:0.500:2	./.	./.	./.
chr1	201285759	rs1779297	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:32:141:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,181:34:181:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,141:32:141:1.00:2
chr1	201286771	rs1722779	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,51:32:107:0.481:2	0/1:41,31:31:72:0.431:2	./.	0/1:58,63:31:121:0.521:2	./.	0/1:69,77:31:146:0.527:2	./.	0/1:62,75:31:137:0.547:2	./.	./.	./.
chr1	201288955	rs1626370	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,9:32:17:0.529:2	0/1:4,6:32:10:0.600:2	./.	0/1:4,14:31:18:0.778:2	./.	0/1:12,17:32:29:0.586:2	./.	0/1:20,20:31:40:0.500:2	./.	./.	./.
chr1	201291119	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.
chr1	201297933	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,41:33:105:0.390:2	./.	./.	./.	./.	./.
chr1	201331554	rs1104859	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,14:33:40:0.350:2	0/1:13,20:32:33:0.606:2	0/1:0,7:32:7:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,22:32:22:1.00:2	0/1:34,17:32:51:0.333:2	0/1:0,28:33:28:1.00:2	0/1:33,24:33:57:0.421:2	0/1:0,46:34:46:1.00:2	0/1:29,28:34:57:0.491:2	0/1:28,34:33:63:0.548:2
chr1	201334382	rs3729547	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,53:31:115:0.461:2	0/1:59,26:32:85:0.306:2	0/1:0,9:31:9:1.00:2	0/1:0,140:31:140:1.00:2	0/1:1,157:32:158:0.994:2	0/1:89,72:32:161:0.447:2	0/1:0,141:31:141:1.00:2	0/1:96,71:31:168:0.425:2	0/1:0,135:32:135:1.00:2	0/1:83,59:32:142:0.415:2	0/1:88,59:32:147:0.401:2
chr1	201334762	rs140245123	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,58:30:95:0.611:2	./.	./.	./.	./.
chr1	201334795	rs3729845	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,25:31:82:0.305:2	./.	0/1:65,38:32:103:0.369:2	./.	./.	./.	0/1:42,30:32:72:0.417:2
chr1	201350983	rs16848494	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,62:32:135:0.459:2	./.
chr1	201351421	rs2275866	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,88:30:186:0.473:2	./.	./.	./.	0/1:108,82:30:192:0.432:2	0/1:100,88:30:190:0.468:2
chr1	201355522	rs4128458	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,12:30:35:0.343:2	0/1:8,10:33:18:0.556:2	0/1:0,9:33:9:1.00:2	0/1:24,14:33:38:0.368:2	0/1:34,21:32:55:0.382:2	0/1:0,44:32:44:1.00:2	0/1:32,26:33:58:0.448:2	0/1:1,69:33:70:0.986:2	0/1:32,17:30:49:0.347:2	0/1:0,39:32:39:1.00:2	0/1:1,45:32:46:0.978:2
chr1	201355653	rs11805972	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,38:32:70:0.543:2
chr1	201355669	rs68021059	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,26:31:71:0.366:2	0/1:61,37:32:98:0.378:2	./.	0/1:43,32:33:75:0.427:2	./.	0/1:36,41:33:77:0.532:2	./.	./.
chr1	201355761	rs12088790	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:29:58:0.534:2
chr1	201355789	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.	./.	./.	./.	./.
chr1	201355943	rs2799677	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,22:31:65:0.338:2	0/1:24,16:32:40:0.400:2	0/1:0,5:31:5:1.00:2	0/1:39,21:31:60:0.350:2	0/1:30,14:31:44:0.318:2	0/1:0,46:31:46:1.00:2	0/1:25,19:30:44:0.432:2	0/1:0,48:30:48:1.00:2	0/1:33,27:31:60:0.450:2	0/1:0,33:31:33:1.00:2	0/1:0,65:30:65:1.00:2
chr1	201358304	rs3738281	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,61:30:121:0.504:2	./.	./.	./.	0/1:39,36:31:75:0.480:2	./.
chr1	201382184	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.	./.
chr1	201383730	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:28:59:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201453829	rs138467738	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,39:30:78:0.500:2	./.	./.	./.	./.	./.	0/1:33,29:32:62:0.468:2	./.
chr1	201618264	rs1267119	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.	./.	./.
chr1	201751707	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,35:7:146:0.241:2	0/1:107,39:8:146:0.267:2	./.	0/1:114,41:9:155:0.265:2	0/1:126,27:12:153:0.176:2	./.	0/1:82,18:10:100:0.180:2
chr1	201754412	rs12146005	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:33:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201754444	rs16849342	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	0/1:38,31:30:69:0.449:2	0/1:12,13:31:25:0.520:2	./.	./.	./.	./.
chr1	201754505	rs188281314	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:30:73:0.411:2	./.	./.	./.	./.
chr1	201777250	rs2820289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,103:31:187:0.551:2	./.	./.	./.	./.	./.	./.
chr1	201780791	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,6:31:115:0.052:2	./.	./.	./.	./.	./.	./.
chr1	201827669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2
chr1	201845175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.
chr1	201860626	rs2250377	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,10:29:28:0.357:2	0/1:16,10:32:27:0.385:2	./.	0/1:20,40:32:60:0.667:2	0/1:16,25:31:41:0.610:2	0/1:13,21:31:34:0.618:2	0/1:16,25:31:41:0.610:2	0/1:0,74:32:74:1.00:2	0/1:1,60:32:61:0.984:2	0/1:0,45:31:45:1.00:2	0/1:1,48:31:49:0.980:2
chr1	201869257	rs2820312	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,92:31:194:0.474:2	0/1:48,69:31:117:0.590:2	0/1:11,5:31:16:0.313:2	0/1:83,85:31:168:0.506:2	0/1:67,64:31:131:0.489:2	0/1:77,85:31:162:0.525:2	0/1:66,84:32:151:0.560:2	./.	./.	./.	./.
chr1	201869563	rs369212393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,76:31:187:0.406:2	./.	./.	./.	./.	./.
chr1	201952574	rs4950806	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,11:33:43:0.256:2	0/1:1,180:33:181:0.994:2	0/1:100,83:32:183:0.454:2	./.	0/1:1,180:33:181:0.994:2	./.	0/1:2,175:34:177:0.989:2	0/1:120,71:33:191:0.372:2	0/1:100,90:32:190:0.474:2
chr1	201952598	rs56768485	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,19:30:52:0.365:2	./.	0/1:99,90:31:190:0.476:2	./.	0/1:2,175:31:177:0.989:2	./.	./.	./.	./.
chr1	201958045	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr1	201958588	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:36:164:0.024:2	./.	./.	./.
chr1	201958634	rs147777734	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,41:31:72:0.569:2	./.
chr1	201966627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2
chr1	201969082	rs1130790	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,53:30:129:0.414:2	./.	./.	./.	0/1:76,45:31:121:0.372:2	0/1:0,150:32:150:1.00:2	./.	0/1:58,59:30:117:0.504:2
chr1	201970562	rs4332408	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:33:96:0.990:2	0/1:0,75:33:75:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,120:32:121:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,128:34:128:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,131:33:131:1.00:2
chr1	201972397	rs192133580	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:31:63:0.397:2	./.	./.	./.
chr1	201973565	rs3820439	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:33:17:0.294:2	0/1:6,8:31:14:0.571:2	./.	./.	0/1:12,7:32:19:0.368:2	./.	0/1:0,11:32:11:1.00:2	./.	./.	./.	./.
chr1	201974712	rs12712	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,50:32:123:0.407:2	./.	./.	./.	0/1:71,43:32:114:0.377:2	./.
chr1	201981218	rs11543979	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,79:33:140:0.564:2	./.	./.	./.	0/1:89,76:32:165:0.461:2	./.	0/1:37,45:32:82:0.549:2	./.
chr1	201981233	rs115158470	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,82:33:132:0.621:2	./.	./.	./.	./.	./.	./.	./.
chr1	201981774	rs55729978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,16:29:32:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr1	201981862	rs2819362	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,19:31:35:0.543:2	0/1:10,4:31:14:0.286:2	./.	0/1:0,22:31:22:1.00:2	0/1:17,9:30:26:0.346:2	0/1:21,7:28:28:0.250:2	0/1:12,9:31:21:0.429:2	0/1:12,12:29:24:0.500:2	./.	0/1:0,12:29:12:1.00:2	./.
chr1	202092332	rs3795594	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	202092360	rs3795595	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,5:29:5:1.00:2	0/1:29,25:31:54:0.463:2	0/1:0,41:30:41:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,58:30:58:1.00:2	0/1:1,53:31:54:0.981:2	0/1:24,27:31:51:0.529:2	0/1:0,51:30:51:1.00:2
chr1	202092415	rs3795596	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,15:30:15:1.00:2	0/1:65,50:31:115:0.435:2	0/1:1,104:31:105:0.990:2	0/1:0,82:31:82:1.00:2	0/1:1,99:31:100:0.990:2	0/1:1,95:31:96:0.990:2	0/1:0,97:32:97:1.00:2	0/1:49,54:31:103:0.524:2	0/1:0,86:31:86:1.00:2
chr1	202092580	rs7516762	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:28:156:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,39:28:39:1.00:2	0/1:108,84:29:194:0.438:2	0/1:2,170:28:172:0.988:2	0/1:0,184:29:185:1.00:2	0/1:2,186:28:188:0.989:2	0/1:1,189:28:190:0.995:2	0/1:1,180:29:181:0.994:2	0/1:90,100:28:191:0.526:2	0/1:0,175:28:175:1.00:2
chr1	202097658	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,36:30:98:0.367:2	./.	./.	./.	./.	./.	./.
chr1	202107549	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.
chr1	202128601	rs61757798	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	0/1:0,50:32:50:1.00:2	./.	./.	./.	./.	./.
chr1	202129826	rs4309039	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:26:36:1.00:2	0/1:0,14:26:14:1.00:2	0/1:4,3:27:7:0.429:2	0/1:0,37:27:37:1.00:2	0/1:36,27:26:63:0.429:2	0/1:26,29:26:55:0.527:2	./.	0/1:22,30:27:52:0.577:2	0/1:0,35:27:35:1.00:2	0/1:20,13:25:33:0.394:2	./.
chr1	202129895	rs3935295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.
chr1	202172943	rs72746693	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:29:82:0.463:2	./.	0/1:21,19:29:40:0.475:2	./.
chr1	202183308	rs10920362	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,25:31:49:0.510:2	0/1:10,14:31:24:0.583:2	0/1:2,4:27:6:0.667:2	./.	0/1:19,19:30:38:0.500:2	0/1:11,26:28:37:0.703:2	0/1:7,11:28:18:0.611:2	0/1:20,24:30:44:0.545:2	0/1:18,20:31:38:0.526:2	./.	0/1:0,28:30:28:1.00:2
chr1	202183327	rs79821910	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,23:30:36:0.639:2	./.
chr1	202276494	rs896551	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:33:111:1.00:2	0/1:0,40:32:40:1.00:2	0/1:11,14:30:25:0.560:2	0/1:0,150:32:150:1.00:2	0/1:113,73:32:186:0.392:2	0/1:1,169:32:170:0.994:2	0/1:105,86:32:191:0.450:2	0/1:98,71:33:169:0.420:2	0/1:77,69:33:146:0.473:2	./.	0/1:65,48:32:113:0.425:2
chr1	202287206	rs788795	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:30:94:1.00:2	0/1:0,54:30:55:1.00:2	0/1:4,6:32:10:0.600:2	0/1:2,83:30:85:0.976:2	0/1:78,46:30:124:0.371:2	0/1:1,112:30:114:0.991:2	0/1:50,38:29:88:0.432:2	0/1:71,48:30:120:0.403:2	0/1:45,73:31:118:0.619:2	./.	0/1:35,29:29:64:0.453:2
chr1	202287537	rs788794	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,13:27:13:1.00:2	0/1:7,11:30:18:0.611:2	0/1:0,20:29:20:1.00:2	0/1:2,5:32:7:0.714:2	0/1:4,5:30:9:0.556:2	0/1:5,7:28:12:0.583:2	./.	./.
chr1	202287813	rs788793	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:28:64:1.00:2	0/1:0,46:29:46:1.00:2	0/1:13,4:31:17:0.235:2	0/1:2,127:29:129:0.984:2	0/1:104,64:30:168:0.381:2	0/1:3,114:29:117:0.974:2	0/1:78,50:29:128:0.391:2	0/1:86,43:30:129:0.333:2	0/1:75,37:30:112:0.330:2	./.	0/1:40,18:29:58:0.310:2
chr1	202304868	rs14451	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:29:18:0.500:2	./.	0/1:58,50:29:108:0.463:2	./.	0/1:70,46:29:116:0.397:2	0/1:85,47:29:132:0.356:2	0/1:42,43:30:85:0.506:2	0/1:0,64:29:64:1.00:2	0/1:56,43:28:99:0.434:2
chr1	202414202	rs112341840	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,41:31:98:0.423:2
chr1	202443063	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.	./.
chr1	202565921	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:33:54:0.444:2	0/1:25,11:32:36:0.306:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	202565948	rs504261	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,37:31:70:0.529:2	0/1:52,39:31:91:0.429:2	0/1:22,30:31:52:0.577:2	0/1:22,31:31:53:0.585:2	./.
chr1	202566086	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.
chr1	202569593	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.
chr1	202569600	rs115267501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,39:33:41:0.951:2
chr1	202574784	rs1968583	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:30:113:1.00:2	0/1:1,65:31:66:0.985:2	0/1:0,6:31:6:1.00:2	0/1:0,129:30:130:1.00:2	0/1:0,81:30:81:1.00:2	0/1:2,143:29:145:0.986:2	0/1:80,67:30:147:0.456:2	0/1:77,66:29:143:0.462:2	0/1:72,78:31:150:0.520:2	0/1:68,57:31:126:0.456:2	0/1:0,114:31:116:1.00:2
chr1	202705455	rs1141109	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,37:30:71:0.521:2	0/1:21,20:29:41:0.488:2	0/1:0,8:29:8:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,68:29:69:1.00:2	0/1:1,108:29:109:0.991:2	0/1:0,81:30:81:1.00:2	0/1:2,64:30:66:0.970:2	0/1:48,32:29:80:0.400:2
chr1	202715284	rs1141108	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,45:30:116:0.388:2	0/1:35,26:31:61:0.426:2	0/1:0,12:30:12:1.00:2	0/1:1,90:30:91:0.989:2	0/1:2,81:29:83:0.976:2	0/1:0,96:30:96:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,83:30:83:1.00:2	0/1:70,61:31:132:0.466:2
chr1	202718202	rs1892164	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,45:32:84:0.536:2	0/1:34,29:32:63:0.460:2	0/1:1,8:32:9:0.889:2	0/1:0,106:31:106:1.00:2	0/1:1,95:31:96:0.990:2	0/1:0,108:31:108:1.00:2	0/1:1,128:32:129:0.992:2	0/1:1,123:32:124:0.992:2	0/1:1,124:32:125:0.992:2	0/1:0,83:32:83:1.00:2	0/1:56,73:32:129:0.566:2
chr1	202733238	rs3196669	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,10:33:24:0.417:2	0/1:14,10:33:24:0.417:2	0/1:0,6:31:6:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,32:34:32:1.00:2	0/1:0,28:33:28:1.00:2	0/1:31,18:33:49:0.367:2
chr1	202862439	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,5:28:150:0.034:2
chr1	202888947	rs3182429	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:29:27:0.370:2	0/1:72,59:30:131:0.450:2	0/1:62,60:29:123:0.492:2	./.	0/1:71,85:30:156:0.545:2	./.	./.	./.	./.
chr1	202910754	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,4:27:63:0.063:2	./.	./.	./.	./.	./.	./.
chr1	202977785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr1	202977809	rs6678040	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:29:85:0.471:2	./.	./.	./.	./.
chr1	202984085	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,7:32:97:0.072:2	./.	./.	./.	./.	./.	./.
chr1	202984089	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr1	202984129	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,5:30:82:0.061:2	./.	./.	./.	./.	./.	./.
chr1	202987632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	202987680	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr1	202992019	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,11:31:191:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr1	203008174	rs61821060	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,9:32:9:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,13:31:13:1.00:2
chr1	203008286	rs10920553	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,19:29:42:0.452:2	0/1:10,7:29:17:0.412:2	./.	0/1:33,33:29:66:0.500:2	0/1:51,40:29:91:0.440:2	0/1:0,77:29:77:1.00:2	0/1:55,43:28:99:0.439:2	0/1:37,40:28:77:0.519:2	0/1:0,48:30:48:1.00:2	0/1:1,38:29:39:0.974:2	0/1:22,30:29:52:0.577:2
chr1	203012543	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2
chr1	203013522	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:32:44:0.568:2
chr1	203024767	rs3736314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,54:32:112:0.482:2	./.
chr1	203025583	rs61748818	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:30:63:0.397:2	./.
chr1	203028371	rs61732315	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:30:11:0.636:2	0/1:80,70:31:150:0.467:2	0/1:71,55:30:126:0.437:2	./.	./.	./.	./.	./.	./.
chr1	203040816	rs2270540	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,26:32:56:0.473:2	0/1:15,17:32:32:0.531:2	0/1:3,5:33:8:0.625:2	0/1:0,71:32:71:1.00:2	0/1:3,56:32:59:0.949:2	0/1:2,74:32:76:0.974:2	./.	0/1:40,33:32:73:0.452:2	0/1:49,40:33:91:0.449:2	0/1:0,48:33:48:1.00:2	./.
chr1	203053768	rs903356	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,76:32:76:1.00:2	0/1:9,14:31:23:0.609:2	0/1:0,128:32:129:1.00:2	0/1:0,167:32:167:1.00:2	0/1:2,169:32:171:0.988:2	0/1:117,73:32:190:0.384:2	0/1:0,185:32:185:1.00:2	0/1:1,122:33:123:0.992:2	0/1:0,140:32:140:1.00:2	0/1:0,137:32:138:1.00:2
chr1	203053787	rs138360992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,75:30:154:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr1	203054651	rs61745017	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:32:44:0.523:2	./.	./.	./.
chr1	203098275	rs2228079	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,49:31:106:0.462:2	./.	0/1:67,72:30:139:0.518:2	0/1:74,80:31:154:0.519:2	./.	./.	./.	./.
chr1	203134203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:34:133:0.030:2
chr1	203134415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:27:58:0.069:2	./.	./.	./.	./.	./.
chr1	203140219	rs141527755	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.
chr1	203140671	rs3737875	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:32:48:0.417:2	./.	0/1:19,18:32:37:0.486:2
chr1	203143725	rs2642531	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:33:26:0.500:2	./.	./.	./.	0/1:81,60:32:142:0.426:2	0/1:69,74:32:143:0.517:2	./.	0/1:98,75:32:173:0.434:2	./.
chr1	203144819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.
chr1	203144833	rs12145010	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.	./.
chr1	203148633	rs4950927	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:29:88:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,8:28:8:1.00:2	0/1:2,121:30:123:0.984:2	0/1:2,130:31:132:0.985:2	0/1:0,148:30:148:1.00:2	0/1:0,160:30:160:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,105:29:105:1.00:2
chr1	203152801	rs880633	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,30:32:30:1.00:2	0/1:5,4:31:9:0.444:2	0/1:0,93:32:93:1.00:2	./.	0/1:0,81:32:81:1.00:2	0/1:61,41:32:102:0.402:2	./.	0/1:2,93:33:95:0.979:2	0/1:49,17:33:66:0.258:2	0/1:0,70:32:70:1.00:2
chr1	203155412	rs111768615	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:32:36:0.417:2	./.
chr1	203155703	rs7515776	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	0/1:51,40:31:92:0.440:2	./.	0/1:40,39:31:79:0.494:2	./.
chr1	203186093	rs1065761	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,19:33:48:0.396:2	./.	./.	./.	0/1:19,31:32:50:0.620:2	0/1:20,18:32:38:0.474:2	./.	0/1:0,47:32:47:1.00:2
chr1	203186947	rs201682373	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,6:33:33:0.182:2	./.	0/1:25,6:32:31:0.194:2	./.	0/1:29,6:31:35:0.171:2	./.	./.
chr1	203186950	rs150192398	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,6:28:34:0.176:2	./.	0/1:25,6:30:31:0.194:2	./.	0/1:29,6:31:35:0.171:2	./.	./.
chr1	203194186	rs2297950	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,32:32:32:1.00:2	./.	0/1:23,20:32:43:0.465:2	./.	0/1:37,25:33:62:0.403:2	0/1:25,22:32:47:0.468:2	./.	0/1:0,43:32:43:1.00:2
chr1	203194834	rs137852607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,55:32:107:0.514:2	./.	./.
chr1	203317162	rs7543148	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:31:98:1.00:2	0/1:0,52:31:52:1.00:2	0/1:6,3:30:9:0.333:2	0/1:58,61:31:119:0.513:2	0/1:0,115:29:115:1.00:2	0/1:2,102:30:104:0.981:2	0/1:81,56:31:137:0.409:2	0/1:5,119:31:124:0.960:2	0/1:53,55:31:108:0.509:2	0/1:0,82:31:82:1.00:2	0/1:0,101:30:101:1.00:2
chr1	203452781	rs2233726	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:29:55:0.455:2
chr1	203465335	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:32:72:0.417:2	./.
chr1	203467808	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.
chr1	203472043	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:31:36:0.389:2	0/1:23,10:31:33:0.303:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203652444	rs1419114	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,119:30:120:1.00:2	./.	0/1:0,94:30:94:1.00:2	0/1:1,105:30:106:0.991:2	0/1:0,102:30:102:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,85:30:85:1.00:2	0/1:1,105:30:106:0.991:2
chr1	203667409	rs2228445	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,94:32:95:0.989:2	0/1:0,50:33:50:1.00:2	0/1:1,13:33:14:0.929:2	0/1:0,111:33:111:1.00:2	./.	0/1:0,143:32:143:1.00:2	0/1:1,101:33:102:0.990:2	0/1:0,104:32:104:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,78:33:78:1.00:2	0/1:1,115:33:117:0.991:2
chr1	203677195	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2	./.	./.	./.	./.
chr1	203689707	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.	./.	./.
chr1	203691612	rs138580420	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,64:34:141:0.454:2
chr1	203708772	rs41264257	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,67:31:160:0.419:2	./.	./.	./.
chr1	203740057	rs41264259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,78:33:160:0.488:2	./.	./.	./.
chr1	203743122	rs3820194	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:65,37:34:102:0.363:2	0/1:22,29:32:51:0.569:2	0/1:4,7:32:11:0.636:2	./.	0/1:53,66:32:120:0.555:2	0/1:85,60:32:145:0.414:2	0/1:1,159:32:160:0.994:2	./.	0/1:0,128:33:128:1.00:2	./.	0/1:64,63:33:127:0.496:2
chr1	203743653	rs3766748	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:75,64:32:139:0.460:2	0/1:53,43:32:96:0.448:2	0/1:13,5:30:18:0.278:2	./.	0/1:86,80:31:166:0.482:2	0/1:106,62:31:168:0.369:2	0/1:0,161:31:161:1.00:2	./.	0/1:0,162:32:162:1.00:2	./.	0/1:83,80:32:163:0.491:2
chr1	203743709	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	203743798	rs41264261	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:32:59:0.407:2	./.	./.
chr1	203787700	rs17851127	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,46:31:46:1.00:2	0/1:1,47:31:48:0.979:2	0/1:4,55:31:59:0.932:2	0/1:5,68:31:73:0.932:2	0/1:0,67:32:67:1.00:2	0/1:0,48:30:48:1.00:2	0/1:1,57:31:58:0.983:2
chr1	203787734	rs138840191	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.
chr1	203787739	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,6:33:141:0.043:2	./.	./.	./.
chr1	203798684	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:29:198:0.025:2	./.	./.	./.
chr1	203800832	rs144917996	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.	./.
chr1	203816361	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.
chr1	203816506	rs2365981	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203816509	rs2365982	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203816766	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.	./.	./.	./.	./.	./.
chr1	203816788	rs148859249	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:30:42:0.095:2	./.	./.	./.	./.	./.	./.
chr1	203816789	rs142558234	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,4:29:41:0.098:2	./.	./.	./.	./.	./.	./.
chr1	203818973	rs41299639	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	0/1:93,99:31:192:0.516:2	0/1:6,170:32:176:0.966:2	./.	0/1:93,87:32:180:0.483:2	./.	0/1:110,82:31:193:0.427:2
chr1	203821314	rs41264265	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	0/1:65,57:31:122:0.467:2	0/1:25,89:32:115:0.781:2	./.	0/1:66,61:33:127:0.480:2	./.	0/1:77,66:32:143:0.462:2
chr1	203821349	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,12:29:92:0.130:2	./.	0/1:136,6:30:142:0.042:2	./.	./.	./.	./.
chr1	203821424	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:34:190:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203821496	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,6:26:62:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203821508	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,5:31:46:0.109:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2
chr1	203830793	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	0/1:185,12:31:197:0.061:2	./.	./.	./.	./.	./.	./.
chr1	203830797	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,8:32:197:0.041:2	./.	./.	./.	./.	./.	./.
chr1	203830798	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	./.	./.	./.	./.
chr1	203830808	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:30:106:0.038:2	./.	./.	0/1:184,13:29:197:0.066:2	./.	./.	./.	./.	./.	0/1:179,4:32:184:0.022:2
chr1	203832854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.
chr1	204110334	rs10793755	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:29:43:1.00:2	0/1:0,27:29:27:1.00:2	./.	0/1:0,53:29:53:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,48:29:48:1.00:2	0/1:1,35:28:36:0.972:2	0/1:0,40:28:40:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,49:28:49:1.00:2
chr1	204120952	rs3737655	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.
chr1	204159787	rs4889	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr1	204170809	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.
chr1	204172060	rs6689599	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,50:32:126:0.397:2
chr1	204172090	rs13334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,73:31:144:0.507:2	./.	./.	./.	./.	./.
chr1	204172096	rs6689607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,43:33:111:0.387:2
chr1	204198209	rs3795571	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,27:31:42:0.643:2	0/1:19,16:30:35:0.457:2	./.	./.	./.	0/1:30,27:30:57:0.474:2	./.	0/1:0,60:30:60:1.00:2	0/1:31,12:32:43:0.279:2	./.	0/1:22,23:30:45:0.511:2
chr1	204199614	rs10900562	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:31:45:0.511:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	0/1:22,25:32:47:0.532:2	./.	0/1:0,72:31:72:1.00:2	0/1:25,23:33:48:0.479:2	./.	0/1:14,26:33:40:0.650:2
chr1	204218334	rs200961980	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,13:12:86:0.151:2	0/1:77,11:13:88:0.125:2	./.	0/1:68,5:26:73:0.068:2	./.
chr1	204228810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204230581	rs3795569	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,13:30:13:1.00:2	0/1:82,53:31:135:0.393:2	./.	0/1:70,69:30:139:0.496:2	0/1:5,157:30:162:0.969:2	0/1:92,84:30:176:0.477:2	./.	0/1:56,52:31:108:0.481:2	0/1:0,119:31:119:1.00:2
chr1	204237416	rs10900571	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:31:42:0.976:2	0/1:0,23:32:23:1.00:2	0/1:1,11:31:12:0.917:2	0/1:18,24:32:42:0.571:2	0/1:36,46:31:82:0.561:2	0/1:28,35:31:63:0.556:2	0/1:1,56:31:57:0.982:2	0/1:0,79:31:79:1.00:2	0/1:22,42:32:64:0.656:2	0/1:36,16:32:52:0.308:2	0/1:1,48:30:49:0.980:2
chr1	204242838	rs33911350	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,33:32:76:0.440:2	0/1:34,22:32:56:0.393:2	0/1:2,11:33:13:0.846:2	0/1:63,36:32:99:0.364:2	./.	./.	0/1:3,107:32:110:0.973:2	./.	./.	0/1:47,34:30:81:0.420:2	./.
chr1	204379452	rs2089891	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,23:34:46:0.500:2	./.	./.	./.	./.	0/1:16,29:34:45:0.644:2	./.	0/1:16,28:32:44:0.636:2
chr1	204379532	rs11799830	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,4:31:19:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204379617	rs3014626	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:32:135:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,138:31:138:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,138:33:138:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,127:34:128:1.00:2	0/1:0,127:32:127:1.00:2	0/1:82,66:31:148:0.446:2
chr1	204396830	rs17334387	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,29:32:81:0.358:2	./.	./.	0/1:56,24:31:80:0.300:2	./.	0/1:53,42:32:95:0.442:2	./.	0/1:37,37:31:74:0.500:2
chr1	204399061	rs2271419	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,8:29:29:0.276:2	./.	./.	0/1:17,9:31:26:0.346:2	./.	0/1:21,10:32:31:0.323:2	./.	0/1:13,4:32:17:0.235:2
chr1	204399064	rs2271420	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,8:31:30:0.267:2	./.	./.	0/1:18,9:31:27:0.333:2	./.	0/1:24,10:33:34:0.294:2	./.	0/1:13,4:32:17:0.235:2
chr1	204403659	rs3747636	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,74:30:171:0.433:2	./.	./.	0/1:4,181:29:186:0.978:2	0/1:105,83:30:188:0.441:2	0/1:109,69:31:178:0.388:2	./.	0/1:74,84:29:158:0.532:2
chr1	204423811	rs61762608	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:31:16:0.438:2
chr1	204425028	rs3765156	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,31:29:72:0.431:2	./.	./.	0/1:56,47:30:103:0.456:2	0/1:54,39:29:93:0.419:2	0/1:45,49:30:94:0.521:2	./.	./.
chr1	204425080	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:112:0.036:2	./.	./.	./.
chr1	204426183	rs61762602	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,21:31:79:0.266:2	./.	./.	./.	./.	./.
chr1	204426879	rs115137673	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:35:77:0.053:2	./.	./.
chr1	204434438	rs45492196	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,13:31:23:0.565:2	0/1:84,71:32:155:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr1	204436066	rs16853773	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,37:31:80:0.463:2	./.	./.	0/1:21,15:31:36:0.417:2	0/1:48,27:31:75:0.360:2	0/1:34,23:31:57:0.404:2	./.	./.
chr1	204438334	rs1124777	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:1,22:31:23:0.957:2	0/1:0,7:32:7:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,45:33:45:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,50:33:50:1.00:2	0/1:30,19:33:49:0.388:2
chr1	204438643	rs1553921	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:29:107:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,104:28:104:1.00:2	0/1:0,110:28:110:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,155:29:155:1.00:2	0/1:6,135:29:141:0.957:2	0/1:0,112:30:112:1.00:2	0/1:0,98:29:98:1.00:2	0/1:66,59:29:125:0.472:2
chr1	204501383	rs4252697	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,50:30:84:0.595:2	0/1:26,34:31:60:0.567:2	./.	0/1:51,28:30:79:0.354:2	./.	./.	0/1:49,23:31:72:0.319:2	0/1:1,94:31:95:0.989:2	0/1:52,38:32:90:0.422:2	./.	./.
chr1	204518499	rs61754765	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:33:67:0.597:2
chr1	204587047	rs11588857	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,37:32:82:0.457:2	0/1:21,30:32:51:0.588:2	./.	0/1:57,49:32:106:0.462:2	./.	./.	0/1:54,33:32:87:0.379:2	0/1:64,47:31:111:0.423:2	0/1:58,48:32:106:0.453:2	./.	./.
chr1	204587178	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:30:60:0.417:2	./.
chr1	204587240	rs3747632	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,21:31:39:0.538:2	0/1:13,17:30:30:0.567:2	0/1:0,11:31:11:1.00:2	0/1:27,40:30:67:0.597:2	./.	./.	0/1:39,46:32:85:0.541:2	./.	0/1:40,25:30:65:0.385:2	0/1:27,22:32:49:0.449:2	./.
chr1	204587569	rs3747631	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,17:32:41:0.415:2	0/1:27,17:32:45:0.386:2	./.	0/1:52,39:32:91:0.429:2	./.	./.	0/1:43,57:32:100:0.570:2	0/1:56,37:32:93:0.398:2	0/1:31,30:33:61:0.492:2	./.	./.
chr1	204587589	rs76468836	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:30:47:0.532:2	./.
chr1	204588140	rs3747630	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,43:29:92:0.467:2	0/1:30,33:29:63:0.524:2	./.	0/1:63,59:29:122:0.484:2	./.	./.	0/1:93,89:29:183:0.489:2	0/1:89,87:29:176:0.494:2	0/1:57,50:30:107:0.467:2	./.	./.
chr1	204588668	rs34224191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:30:78:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr1	204588700	rs201287849	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,14:17:68:0.206:2	./.	./.	./.	./.	./.
chr1	204588926	rs35463653	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:32:73:0.411:2
chr1	204589101	rs3789044	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,34:29:63:0.540:2	0/1:28,25:30:53:0.472:2	./.	0/1:53,51:29:104:0.490:2	./.	./.	0/1:49,54:28:103:0.524:2	0/1:42,47:28:89:0.528:2	0/1:53,57:30:110:0.518:2	./.	./.
chr1	204589222	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:32:95:0.421:2	./.
chr1	204589623	rs1809276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.
chr1	204590044	rs7539399	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,32:31:32:1.00:2	0/1:14,14:31:28:0.500:2	./.	0/1:0,19:31:19:1.00:2	0/1:29,18:30:47:0.383:2	0/1:0,38:32:38:1.00:2	0/1:0,29:30:29:1.00:2	0/1:32,29:31:61:0.475:2
chr1	204590200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2
chr1	204590616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:34:168:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204591237	rs884108	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,187:29:187:1.00:2	0/1:1,100:28:101:0.990:2	0/1:0,36:29:36:1.00:2	0/1:5,181:29:186:0.973:2	0/1:113,86:29:199:0.432:2	./.	0/1:0,196:29:196:1.00:2	0/1:106,86:29:192:0.448:2	0/1:0,185:30:185:1.00:2	0/1:0,189:29:189:1.00:2	0/1:0,182:29:183:1.00:2
chr1	204943362	rs147248519	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:29:72:0.403:2	./.	./.	./.	./.	./.
chr1	204943947	rs2246662	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,22:31:55:0.400:2	0/1:9,9:31:18:0.500:2	./.	./.	0/1:0,34:29:34:1.00:2	./.	0/1:0,44:29:44:1.00:2	0/1:2,59:29:61:0.967:2	./.	./.	0/1:20,22:30:42:0.524:2
chr1	204944474	rs202061387	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,18:11:84:0.214:2	./.	./.	./.	./.	0/1:109,21:13:130:0.162:2	./.	./.	./.	./.	0/1:61,12:14:73:0.164:2
chr1	204945934	rs6657372	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:30:36:0.444:2	0/1:18,15:29:33:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204948659	rs6667532	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,43:29:76:0.566:2	0/1:24,21:30:45:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204953237	rs370114778	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,39:33:103:0.379:2	./.	./.
chr1	204966428	rs2802808	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,72:31:188:0.383:2	./.	./.	./.	./.	0/1:75,87:32:162:0.537:2	./.
chr1	204970302	rs4951151	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,63:30:139:0.453:2	./.	0/1:69,75:30:144:0.521:2	./.	./.	0/1:80,45:31:125:0.360:2	0/1:47,54:31:101:0.535:2	./.
chr1	204978704	rs55678495	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	0/1:18,32:32:50:0.640:2	0/1:16,20:32:36:0.556:2	0/1:20,27:32:47:0.574:2
chr1	204985478	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.	./.	./.	./.
chr1	204985634	rs143897854	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,49:30:115:0.426:2	./.	./.	./.	./.	./.	./.
chr1	205027390	rs9787172	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,68:31:117:0.581:2	./.	./.	0/1:83,74:31:157:0.471:2	./.	0/1:80,52:32:133:0.394:2	./.	./.
chr1	205027737	rs2275697	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:31:23:0.261:2	./.	./.	0/1:0,17:30:17:1.00:2	./.	0/1:19,8:32:27:0.296:2	./.	./.
chr1	205027790	rs114050151	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:29:21:0.190:2	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.
chr1	205028351	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.	./.
chr1	205031116	rs2229866	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:30:17:0.647:2	./.	./.	0/1:0,16:29:16:1.00:2	./.	0/1:0,25:33:25:1.00:2	./.	./.
chr1	205036252	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:100:0.040:2	./.	./.	./.	./.	./.
chr1	205041158	rs2229868	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,41:31:93:0.441:2	0/1:77,42:31:119:0.353:2	0/1:45,60:31:105:0.571:2	0/1:2,105:32:108:0.981:2	./.	0/1:47,39:32:86:0.453:2	0/1:46,41:31:87:0.471:2	./.
chr1	205042237	rs56111335	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,44:33:98:0.449:2	0/1:32,22:32:54:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205042840	rs17416074	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.	./.
chr1	205052723	rs10494858	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,62:30:136:0.456:2	./.	./.	./.	./.	0/1:62,76:31:138:0.551:2	./.	./.
chr1	205052939	rs4950979	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,28:32:68:0.412:2	0/1:16,19:32:35:0.543:2	0/1:0,8:31:8:1.00:2	0/1:0,50:31:50:1.00:2	0/1:20,20:31:40:0.500:2	0/1:0,48:31:48:1.00:2	0/1:1,47:31:48:0.979:2	0/1:28,25:31:53:0.472:2	0/1:1,64:32:65:0.985:2	0/1:0,46:32:46:1.00:2	0/1:47,40:32:87:0.460:2
chr1	205053150	rs16855059	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,36:33:62:0.581:2	./.	./.	./.	./.	0/1:38,34:33:72:0.472:2	./.	./.
chr1	205053219	rs4951168	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,49:33:80:0.613:2	0/1:24,28:33:52:0.538:2	0/1:0,7:31:7:1.00:2	0/1:1,73:32:74:0.986:2	0/1:51,23:32:74:0.311:2	0/1:0,65:32:65:1.00:2	0/1:0,71:32:71:1.00:2	0/1:33,42:32:75:0.560:2	0/1:0,89:32:89:1.00:2	0/1:1,51:31:52:0.981:2	0/1:34,40:33:74:0.541:2
chr1	205053407	rs145742596	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,76:31:127:0.598:2	./.
chr1	205070733	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:34:109:0.037:2	./.	./.
chr1	205073022	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205129319	rs1062715	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,71:31:159:0.447:2	./.	./.	./.	./.	0/1:0,163:32:163:1.00:2	./.	./.
chr1	205130413	rs3851294	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,29:28:55:0.527:2	0/1:12,37:30:49:0.755:2	0/1:0,8:31:8:1.00:2	0/1:1,82:29:83:0.988:2	0/1:13,11:27:24:0.458:2	0/1:0,58:29:58:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,44:29:44:1.00:2	0/1:40,41:29:81:0.506:2
chr1	205197808	rs112979653	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,32:30:64:0.500:2	./.	./.	./.	./.	./.	./.
chr1	205210806	rs146869196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,71:32:135:0.526:2	./.	./.	./.	./.	./.	./.
chr1	205225457	rs1172147	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,35:32:65:0.538:2	0/1:26,18:32:44:0.409:2	0/1:0,6:29:6:1.00:2	0/1:44,26:31:70:0.371:2	./.	0/1:32,33:31:65:0.508:2	./.	0/1:48,27:31:75:0.360:2	./.	0/1:31,28:31:59:0.475:2	0/1:42,28:31:70:0.400:2
chr1	205238275	rs1768586	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,25:30:25:1.00:2	0/1:79,74:30:153:0.484:2	./.	0/1:66,84:30:150:0.560:2	./.	0/1:73,99:31:172:0.576:2	./.	0/1:87,66:29:153:0.431:2	0/1:90,64:31:155:0.416:2
chr1	205238530	rs1779411	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:1,6:28:7:0.857:2	./.	0/1:9,9:27:18:0.500:2	./.	0/1:3,5:30:8:0.625:2	./.	0/1:6,5:29:11:0.455:2	0/1:0,3:17:3:1.00:2
chr1	205238717	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,25:33:46:0.543:2	0/1:9,11:33:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205240251	rs1668867	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,16:30:41:0.390:2	./.	0/1:22,22:30:44:0.500:2	./.	0/1:33,37:30:70:0.529:2	./.	0/1:21,11:32:33:0.344:2	0/1:20,22:32:42:0.524:2
chr1	205272926	rs1106201	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	0/1:10,4:27:14:0.286:2	0/1:1,7:29:8:0.875:2	./.
chr1	205272983	rs1106202	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:31:48:0.375:2	./.	0/1:23,20:31:43:0.465:2	0/1:12,17:32:29:0.586:2	./.
chr1	205273142	rs41264881	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,35:30:65:0.538:2	./.	./.	0/1:33,34:29:67:0.507:2	./.	./.	0/1:41,39:30:80:0.488:2
chr1	205275421	rs4951197	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,62:31:62:1.00:2
chr1	205277781	rs2275868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,87:30:173:0.503:2	./.	./.	./.	./.
chr1	205306590	rs3210952	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,40:33:81:0.494:2	0/1:28,24:32:52:0.462:2	0/1:6,3:33:9:0.333:2	./.	./.	0/1:55,60:33:115:0.522:2	./.	./.	./.	0/1:49,46:32:95:0.484:2	./.
chr1	205308335	rs1105385	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:31:33:0.364:2	./.	0/1:20,17:31:37:0.459:2	0/1:22,10:31:32:0.313:2	0/1:26,18:32:44:0.409:2	0/1:17,12:33:29:0.414:2	0/1:13,15:32:28:0.536:2	0/1:16,14:32:30:0.467:2
chr1	205308347	rs1105386	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:30:38:0.289:2	./.	./.	./.	./.
chr1	205308368	rs1105387	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,20:31:54:0.370:2	./.	0/1:20,26:30:46:0.565:2	0/1:32,16:31:48:0.333:2	0/1:25,28:31:53:0.528:2	0/1:22,18:31:40:0.450:2	0/1:19,26:31:45:0.578:2	0/1:20,22:30:42:0.524:2
chr1	205308458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.
chr1	205308914	rs116078922	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,10:20:73:0.137:2	0/1:81,13:16:94:0.138:2	0/1:51,13:23:64:0.203:2	0/1:79,15:16:95:0.160:2	0/1:66,17:17:83:0.205:2	./.	./.	./.
chr1	205350790	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:30:141:0.028:2	./.	./.	./.	./.	./.
chr1	205353492	rs2274702	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	0/1:30,28:30:58:0.483:2
chr1	205388370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.
chr1	205492679	rs4623769	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,56:32:82:0.683:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	0/1:40,37:32:77:0.481:2	./.	./.	./.
chr1	205492756	rs7529442	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:31:96:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,88:30:88:1.00:2	0/1:1,115:30:116:0.991:2	0/1:72,34:29:106:0.321:2	0/1:0,140:30:140:1.00:2	0/1:1,109:31:110:0.991:2	0/1:0,89:29:89:1.00:2	0/1:2,60:28:62:0.968:2
chr1	205495233	rs17850752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205495976	rs1544154	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:30:112:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,111:30:111:1.00:2	0/1:2,169:31:171:0.988:2	0/1:0,161:29:161:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,101:30:101:1.00:2
chr1	205548956	rs112374673	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,16:31:28:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:70,63:32:133:0.474:2
chr1	205554085	rs7526132	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,19:32:50:0.380:2	0/1:23,23:32:46:0.500:2	0/1:1,6:33:7:0.857:2	0/1:26,28:33:54:0.519:2	0/1:35,25:31:60:0.417:2	0/1:1,83:32:84:0.988:2	0/1:49,31:32:80:0.388:2	0/1:57,41:32:98:0.418:2	0/1:41,43:32:84:0.512:2	0/1:45,31:32:76:0.408:2	./.
chr1	205554095	rs7515820	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,17:32:45:0.378:2	0/1:22,20:32:42:0.476:2	0/1:1,6:30:7:0.857:2	0/1:24,27:33:51:0.529:2	0/1:24,23:29:47:0.489:2	0/1:1,73:32:75:0.986:2	0/1:45,27:31:72:0.375:2	0/1:54,33:31:87:0.379:2	0/1:39,41:33:80:0.513:2	0/1:37,28:32:65:0.431:2	./.
chr1	205561372	rs7529077	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,11:31:26:0.423:2	./.	./.	0/1:86,72:30:158:0.456:2	0/1:83,64:31:147:0.435:2	./.	0/1:85,88:31:173:0.509:2	0/1:73,75:31:148:0.507:2	./.
chr1	205569596	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,23:32:71:0.324:2	./.	./.	./.	./.	./.	./.
chr1	205589007	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2
chr1	205589574	rs1064406	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,39:33:72:0.542:2	./.	./.	./.
chr1	205628442	rs151018622	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,75:31:154:0.487:2
chr1	205632563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.
chr1	205693063	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205740611	rs200445820	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,76:32:145:0.524:2
chr1	205767885	rs708727	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,83:31:188:0.441:2	./.	0/1:86,101:32:187:0.540:2	0/1:8,178:31:186:0.957:2	0/1:1,190:31:191:0.995:2	./.	0/1:0,172:32:172:1.00:2	0/1:96,92:31:189:0.489:2
chr1	205779231	rs11240569	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	0/1:0,109:32:109:1.00:2	./.	./.	./.	0/1:48,47:32:95:0.495:2	./.	0/1:29,29:33:58:0.500:2
chr1	205801872	rs1361754	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,28:33:59:0.475:2	0/1:28,18:33:46:0.391:2	./.	0/1:60,47:32:107:0.439:2	./.	0/1:61,39:32:100:0.390:2	0/1:2,75:32:77:0.974:2	0/1:1,90:31:91:0.989:2	./.	0/1:0,71:32:71:1.00:2	0/1:55,35:32:90:0.389:2
chr1	205810947	rs11240573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,84:33:192:0.438:2	./.	./.
chr1	205811828	rs4951025	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,81:33:83:0.976:2	0/1:1,32:32:33:0.970:2	0/1:3,9:32:12:0.750:2	./.	./.	./.	./.	./.	0/1:51,41:33:92:0.446:2	./.	./.
chr1	205812912	rs7518979	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2
chr1	205814485	rs1104899	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,17:32:33:0.515:2	0/1:14,14:32:28:0.500:2	0/1:1,4:31:5:0.800:2	./.	0/1:43,27:31:70:0.386:2	0/1:36,29:31:65:0.446:2	./.	./.	0/1:32,25:32:57:0.439:2	./.	0/1:24,15:32:39:0.385:2
chr1	205814497	rs1891460	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,51:30:51:1.00:2	0/1:1,72:30:73:0.986:2	0/1:0,57:29:57:1.00:2	0/1:1,67:29:68:0.985:2	0/1:0,82:30:82:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,38:29:38:1.00:2
chr1	205814586	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr1	205817018	rs11540015	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,9:29:30:0.300:2	./.	0/1:152,43:29:195:0.221:2	./.	./.	./.	0/1:141,55:30:196:0.281:2	./.	./.
chr1	205819039	rs11540016	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:30:10:0.800:2	./.	0/1:49,39:30:88:0.443:2	./.	./.	./.	0/1:47,29:31:76:0.382:2	./.	./.
chr1	205819104	rs11540014	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:28:15:0.667:2	./.	0/1:103,89:28:192:0.464:2	./.	./.	./.	0/1:104,68:28:172:0.395:2	./.	./.
chr1	205884062	rs9438438	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,64:30:124:0.516:2	0/1:48,46:29:94:0.489:2	./.	./.
chr1	205884274	rs6669481	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:28:100:0.500:2	0/1:33,43:29:76:0.566:2	./.	./.
chr1	205886413	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr1	205887981	rs16856462	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,40:30:74:0.541:2
chr1	205889329	rs16856470	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,77:30:156:0.494:2
chr1	205890925	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,46:33:111:0.414:2	./.	./.
chr1	205895666	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205896647	rs34803033	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,53:28:114:0.465:2
chr1	205901000	rs33943971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,57:32:143:0.399:2
chr1	205901102	rs200068898	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,71:32:157:0.452:2	0/1:58,49:32:107:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205904901	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	206145468	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:31:198:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	206145519	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	206153993	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,8:31:191:0.042:2	./.	./.	./.
chr1	206230958	rs28632197	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,12:27:15:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr1	206230986	rs28676508	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,16:30:20:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr1	206317568	rs73074812	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:31:39:0.590:2	./.	./.	./.	./.
chr1	206318432	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.
chr1	206319119	rs57621203	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,82:32:194:0.423:2	./.	./.	./.	./.
chr1	206327510	rs61742539	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,111:30:114:0.974:2	0/1:35,52:30:87:0.598:2	0/1:55,50:29:105:0.476:2	0/1:47,43:29:90:0.478:2	./.	./.	./.	./.
chr1	206328803	rs41302235	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,148:32:148:1.00:2	0/1:91,57:32:148:0.385:2	0/1:74,65:32:139:0.468:2	0/1:77,53:32:130:0.408:2	./.	./.	./.	./.
chr1	206516261	rs201036189	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,63:31:191:0.330:2	0/1:144,54:31:198:0.273:2	0/1:98,42:31:140:0.300:2	0/1:148,48:32:196:0.245:2	0/1:133,61:30:194:0.314:2	0/1:128,69:31:197:0.350:2	0/1:140,55:31:195:0.282:2	0/1:141,56:31:197:0.284:2	0/1:108,87:32:196:0.446:2	0/1:141,57:32:198:0.288:2	0/1:131,61:30:192:0.318:2
chr1	206566048	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,51:30:194:0.264:2	0/1:90,41:31:131:0.313:2	0/1:32,11:32:43:0.256:2	0/1:133,62:31:196:0.318:2	0/1:141,57:30:198:0.288:2	0/1:139,58:31:197:0.294:2	0/1:153,45:31:198:0.227:2	0/1:158,33:30:191:0.173:2	0/1:136,59:31:196:0.303:2	0/1:146,50:31:196:0.255:2	0/1:135,54:30:189:0.286:2
chr1	206566195	rs200978831	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,24:32:190:0.126:2	0/1:161,29:32:190:0.153:2	0/1:86,25:31:111:0.225:2	0/1:165,29:32:194:0.149:2	0/1:162,35:32:197:0.178:2	0/1:159,39:32:198:0.197:2	0/1:173,27:32:200:0.135:2	./.	0/1:164,25:33:189:0.132:2	0/1:166,26:32:192:0.135:2	0/1:172,20:33:192:0.104:2
chr1	206566199	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,19:33:189:0.101:2	0/1:172,21:32:193:0.109:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	206566903	rs2987927	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:154,10:31:164:0.061:2	./.	./.	0/1:137,12:31:149:0.081:2	./.	./.	./.	./.	./.	0/1:159,9:32:168:0.054:2	./.
chr1	206566904	rs2919105	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,98:32:166:0.590:2	0/1:53,53:32:106:0.500:2	0/1:22,13:32:35:0.371:2	0/1:70,78:32:148:0.527:2	0/1:100,93:32:193:0.482:2	0/1:97,96:31:193:0.497:2	0/1:83,108:32:191:0.565:2	0/1:81,114:32:195:0.585:2	0/1:92,102:33:194:0.526:2	0/1:66,105:32:171:0.614:2	0/1:87,108:32:195:0.554:2
chr1	206578650	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,96:33:188:0.511:2	0/1:61,58:32:119:0.487:2	0/1:13,17:33:30:0.567:2	0/1:100,75:33:175:0.429:2	0/1:97,83:33:180:0.461:2	0/1:120,65:33:185:0.351:2	0/1:99,90:33:189:0.476:2	0/1:111,64:33:175:0.366:2	0/1:98,80:34:178:0.449:2	0/1:119,69:33:188:0.367:2	0/1:81,81:33:162:0.500:2
chr1	206579737	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,14:14:160:0.088:2
chr1	206579798	rs200703951	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,84:31:188:0.447:2	0/1:102,81:30:183:0.443:2	0/1:44,25:29:69:0.362:2	0/1:96,94:30:190:0.495:2	0/1:102,90:29:192:0.469:2	0/1:91,96:30:187:0.513:2	0/1:100,99:30:199:0.497:2	0/1:105,85:30:190:0.447:2	0/1:100,87:31:187:0.465:2	0/1:94,80:30:175:0.460:2	0/1:98,86:31:184:0.467:2
chr1	206603535	rs2297539	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,21:31:43:0.488:2	0/1:18,12:32:30:0.400:2	0/1:2,4:29:6:0.667:2	./.	0/1:23,13:32:36:0.361:2	0/1:22,45:31:67:0.672:2	./.	0/1:36,46:31:82:0.561:2	./.	./.	0/1:62,25:32:87:0.287:2
chr1	206626607	rs11120575	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,39:29:86:0.453:2	0/1:44,36:31:80:0.450:2	./.	0/1:1,117:29:118:0.992:2	0/1:57,57:30:114:0.500:2	0/1:55,54:30:109:0.495:2	0/1:89,69:30:158:0.437:2	0/1:81,63:30:144:0.438:2	0/1:0,149:30:149:1.00:2	0/1:0,130:30:130:1.00:2	0/1:78,74:30:152:0.487:2
chr1	206634429	rs17018890	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,13:32:14:0.929:2	0/1:17,9:32:26:0.346:2	0/1:9,10:31:19:0.526:2	./.	0/1:3,5:32:8:0.625:2	./.
chr1	206634516	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	./.
chr1	206647742	rs1539242	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,85:33:85:1.00:2
chr1	206647787	rs1539243	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:30:15:0.733:2	0/1:0,162:30:162:1.00:2	./.	0/1:0,109:29:109:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,153:29:153:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,90:29:90:1.00:2
chr1	206650065	rs41296034	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,57:33:112:0.509:2	0/1:85,75:32:160:0.469:2	./.	./.	0/1:53,55:32:108:0.509:2	./.
chr1	206651107	rs2297545	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:32:49:0.388:2	./.	0/1:34,27:33:61:0.443:2	./.	./.	./.
chr1	206665758	rs17024805	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,105:32:191:0.550:2	./.	./.	./.
chr1	206665896	rs2336940	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:1,65:32:66:0.985:2	./.	0/1:1,113:32:114:0.991:2	0/1:0,112:32:114:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,113:33:113:1.00:2	0/1:5,142:33:147:0.966:2	0/1:0,135:33:135:1.00:2	0/1:0,109:33:110:1.00:2	./.
chr1	206665916	rs41299860	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,67:29:134:0.500:2	./.	./.	./.
chr1	206666368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.
chr1	206669465	rs3748022	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,78:33:167:0.467:2	0/1:83,62:33:145:0.428:2	./.
chr1	206680983	rs2095124	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:2,2:33:4:0.500:2	0/1:0,2:32:2:1.00:2	0/1:1,3:32:4:0.750:2	./.	0/1:0,2:31:2:1.00:2	./.
chr1	206711610	rs79017047	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,29:29:78:0.372:2	0/1:22,19:31:41:0.463:2	./.	./.	0/1:60,55:29:115:0.478:2	./.	./.	./.	./.	./.	./.
chr1	206757857	rs4845112	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,27:31:79:0.342:2	./.
chr1	206758579	rs146761578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:34:53:0.491:2	./.
chr1	206773090	rs199944579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,36:32:56:0.643:2	./.	./.	./.	./.	./.
chr1	206773659	rs6662929	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:30:139:1.00:2	0/1:1,81:30:82:0.988:2	0/1:0,30:30:30:1.00:2	0/1:0,152:31:152:1.00:2	0/1:2,122:30:124:0.984:2	0/1:0,159:30:159:1.00:2	0/1:1,163:30:164:0.994:2	0/1:1,167:30:168:0.994:2	0/1:0,168:31:168:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,148:30:148:1.00:2
chr1	206811001	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.	./.
chr1	206905043	rs4073250	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	0/1:100,81:32:181:0.448:2	0/1:0,129:33:129:1.00:2	./.	./.
chr1	206905952	rs372815549	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,93:33:179:0.520:2	./.	./.
chr1	206944257	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.
chr1	207013240	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,69:31:166:0.416:2	./.	./.	./.	./.
chr1	207015957	rs2243191	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,4:33:4:1.00:2	0/1:26,26:32:52:0.500:2	0/1:1,26:31:28:0.963:2	0/1:42,37:33:79:0.468:2	0/1:0,63:33:63:1.00:2	0/1:1,53:32:54:0.981:2	0/1:25,32:33:57:0.561:2	./.	0/1:0,72:33:72:1.00:2
chr1	207073701	rs142816743	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207074905	rs1150258	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,66:31:119:0.555:2	0/1:46,42:32:88:0.477:2	./.	0/1:1,165:32:166:0.994:2	0/1:134,4:34:138:0.029:2	./.	0/1:78,61:31:139:0.439:2	0/1:91,93:32:186:0.505:2	0/1:3,155:32:158:0.981:2	0/1:56,57:32:113:0.504:2	0/1:2,187:31:189:0.989:2
chr1	207087435	rs167082	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,10:33:25:0.400:2	0/1:7,14:32:21:0.667:2	./.	0/1:0,48:32:48:1.00:2	./.	./.	0/1:24,22:32:46:0.478:2	0/1:14,17:30:31:0.548:2	0/1:0,57:33:57:1.00:2	0/1:13,12:32:25:0.480:2	0/1:0,43:31:43:1.00:2
chr1	207109116	rs2275531	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,21:32:43:0.488:2	0/1:20,11:32:31:0.355:2	./.	0/1:0,108:32:108:1.00:2	./.	./.	0/1:60,48:32:108:0.444:2	0/1:55,54:31:109:0.495:2	0/1:0,81:32:81:1.00:2	0/1:51,26:31:77:0.338:2	0/1:0,54:32:54:1.00:2
chr1	207110936	rs291096	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:64,52:33:116:0.448:2	0/1:20,30:32:50:0.600:2	./.	0/1:0,136:33:136:1.00:2	./.	./.	0/1:87,87:33:174:0.500:2	0/1:70,70:32:141:0.500:2	0/1:1,154:33:155:0.994:2	0/1:58,42:31:100:0.420:2	0/1:5,104:33:109:0.954:2
chr1	207132345	rs7556372	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,15:31:31:0.484:2	0/1:2,10:31:12:0.833:2	./.	0/1:0,24:30:24:1.00:2	./.	./.	0/1:9,6:32:15:0.400:2	0/1:25,22:30:47:0.468:2	0/1:0,31:30:31:1.00:2	0/1:15,13:30:28:0.464:2	0/1:0,37:31:37:1.00:2
chr1	207133093	rs151021758	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:33:40:0.500:2	0/1:24,15:33:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207135723	rs188207561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,48:30:106:0.453:2	./.	./.	./.	./.	./.
chr1	207140440	rs11119933	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,31:33:92:0.341:2	./.	0/1:52,43:32:95:0.453:2
chr1	207143422	rs1856746	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,44:28:90:0.489:2	0/1:21,26:29:47:0.553:2	./.	0/1:0,141:29:141:1.00:2	./.	./.	0/1:62,42:29:104:0.404:2	0/1:89,64:30:153:0.418:2	0/1:0,121:29:121:1.00:2	0/1:74,37:27:111:0.333:2	0/1:0,81:28:81:1.00:2
chr1	207195653	rs373955367	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2	./.	./.
chr1	207195779	rs2842726	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,40:32:41:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,76:33:77:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,99:33:99:1.00:2
chr1	207195808	rs35267170	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,42:32:61:0.689:2	./.	./.	./.	./.	./.
chr1	207196067	rs190635695	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:32:50:0.620:2	./.	./.	./.	./.
chr1	207236528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.
chr1	207238419	rs72741390	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,33:32:78:0.423:2	0/1:26,12:31:38:0.316:2	./.	0/1:4,93:31:97:0.959:2	./.	0/1:46,45:30:91:0.495:2	0/1:53,36:30:89:0.404:2	0/1:87,49:31:136:0.360:2	0/1:51,52:31:103:0.505:2	./.	./.
chr1	207240863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:28:54:0.074:2	./.	./.	./.	./.	./.
chr1	207244853	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,4:34:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	207269919	rs8942	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:33:62:0.435:2	0/1:24,25:32:49:0.510:2	./.	./.	./.	0/1:72,30:31:102:0.294:2	./.	./.	./.	./.	./.
chr1	207297680	rs1126618	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,5:27:12:0.417:2	0/1:13,3:29:16:0.188:2	./.	0/1:12,8:29:20:0.400:2	0/1:0,13:29:13:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,11:29:11:1.00:2	0/1:20,13:28:33:0.394:2	0/1:17,17:31:34:0.500:2	./.	0/1:0,29:28:29:1.00:2
chr1	207304900	rs4844573	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,41:31:81:0.506:2	0/1:15,22:32:37:0.595:2	0/1:1,3:32:4:0.750:2	./.	0/1:20,28:32:48:0.583:2	./.	0/1:0,77:32:78:1.00:2	./.	./.	./.	./.
chr1	207317207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:30:142:0.028:2	./.	./.	./.	./.
chr1	207646322	rs1048971	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:40,30:29:70:0.429:2	./.	0/1:3,73:30:76:0.961:2	0/1:71,39:30:110:0.355:2	./.	./.	./.
chr1	207646462	rs17615	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	./.	./.	0/1:0,89:31:89:1.00:2	./.	./.	./.	./.
chr1	207646898	rs4308977	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:33:9:1.00:2	./.	./.	./.	0/1:2,73:32:75:0.973:2	./.	0/1:150,6:29:156:0.038:2	./.	./.
chr1	207646923	rs17616	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	0/1:4,84:32:88:0.955:2	./.	./.	./.	./.
chr1	207648173	rs61735651	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:30:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207651259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.
chr1	207653364	rs17618	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,137:30:138:0.993:2	./.	./.	./.	./.	0/1:84,75:30:159:0.472:2	./.	./.
chr1	207653395	rs17617	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,140:32:140:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,19:30:19:1.00:2	./.	0/1:0,112:31:112:1.00:2	0/1:1,131:30:132:0.992:2	0/1:0,114:31:114:1.00:2	0/1:81,67:31:148:0.453:2	./.	0/1:79,63:31:142:0.444:2	0/1:0,152:31:152:1.00:2
chr1	207679307	rs4844600	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,117:33:118:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,24:33:24:1.00:2	./.	0/1:0,74:31:74:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,116:32:116:1.00:2	0/1:97,83:33:180:0.461:2	./.	0/1:63,47:32:110:0.427:2	0/1:87,85:32:172:0.494:2
chr1	207697152	rs200445052	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:32:190:0.037:2	0/1:178,6:32:186:0.033:2
chr1	207697169	rs200373331	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2
chr1	207702097	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.
chr1	207705605	rs148620569	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,16:31:17:0.941:2	0/1:1,12:33:13:0.923:2	./.	./.	./.	./.	./.	./.	./.	0/1:56,20:33:76:0.263:2	0/1:69,11:32:80:0.138:2
chr1	207707606	rs200755424	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:149,48:32:197:0.244:2	0/1:155,34:32:189:0.180:2	./.	./.	./.	./.	./.	./.	./.	0/1:148,48:33:196:0.245:2	0/1:158,35:32:193:0.181:2
chr1	207715556	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,8:29:190:0.042:2	./.	./.	./.
chr1	207715740	rs140717816	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:76,70:32:147:0.479:2	0/1:56,51:32:107:0.477:2	0/1:10,7:33:17:0.412:2	./.	./.	./.	./.	./.	./.	0/1:108,62:32:170:0.365:2	0/1:111,59:31:170:0.347:2
chr1	207724160	rs147353507	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,21:31:21:1.00:2	0/1:0,10:32:10:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:30,12:33:42:0.286:2	0/1:81,25:32:106:0.236:2
chr1	207726161	rs200082366	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:158,39:33:197:0.198:2	0/1:158,40:32:198:0.202:2	./.	./.	./.	./.	./.	./.	./.	0/1:151,43:32:194:0.222:2	0/1:151,42:33:193:0.218:2
chr1	207734297	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:93,81:31:174:0.466:2	0/1:54,40:32:94:0.426:2	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	0/1:115,66:30:181:0.365:2	0/1:124,51:30:175:0.291:2
chr1	207734412	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr1	207739201	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	0/1:191,5:32:196:0.026:2	./.	0/1:189,6:33:195:0.031:2	0/1:190,4:33:194:0.021:2	0/1:190,6:30:196:0.031:2	./.
chr1	207739211	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	0/1:192,6:31:198:0.030:2	./.	0/1:173,6:33:180:0.034:2	0/1:193,4:34:197:0.020:2	0/1:176,7:33:183:0.038:2	./.
chr1	207739213	rs56229517	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr1	207741245	rs41274762	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:136,15:31:151:0.099:2	0/1:92,6:29:98:0.061:2	./.	./.	./.	./.	./.	./.	./.	0/1:116,17:32:133:0.128:2	0/1:162,12:31:176:0.069:2
chr1	207743256	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:146,52:32:198:0.263:2	0/1:147,46:32:193:0.238:2	./.	./.	./.	./.	./.	./.	./.	0/1:165,33:33:198:0.167:2	0/1:165,29:31:194:0.149:2
chr1	207753621	rs2274567	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,40:28:74:0.541:2	0/1:27,13:26:40:0.325:2	0/1:0,5:28:5:1.00:2	./.	./.	./.	./.	./.	./.	0/1:41,34:28:75:0.453:2	0/1:39,51:28:90:0.567:2
chr1	207757995	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr1	207760773	rs3737002	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,21:31:69:0.304:2	0/1:59,58:31:117:0.496:2	./.	./.	./.	./.	./.
chr1	207782707	rs17259045	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,84:32:151:0.556:2	./.	./.	./.	./.	./.
chr1	207782916	rs4844609	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,99:31:99:1.00:2	0/1:62,30:32:92:0.326:2	0/1:0,66:31:66:1.00:2	0/1:0,99:31:100:1.00:2
chr1	207782931	rs6691117	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,35:29:55:0.636:2	0/1:32,18:30:50:0.360:2	0/1:6,6:29:12:0.500:2	./.	./.	./.	./.	./.	./.	0/1:36,32:30:68:0.471:2	0/1:53,47:29:100:0.470:2
chr1	207787753	rs55749440	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,6:34:135:0.044:2	./.	./.	0/1:155,4:34:159:0.025:2
chr1	207787767	rs55647214	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:33:172:0.035:2	./.	./.	./.	./.	./.
chr1	207787777	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:30:186:0.032:2	./.	./.	./.	./.	./.
chr1	207787796	rs61822976	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:144,11:29:155:0.071:2	./.	./.	0/1:184,10:29:194:0.052:2	./.	0/1:171,13:28:184:0.071:2	0/1:129,22:29:151:0.146:2	0/1:164,26:29:191:0.137:2	0/1:161,14:30:175:0.080:2	./.	0/1:166,16:30:182:0.088:2
chr1	207789977	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:90:0.045:2	./.	./.	./.
chr1	207790088	rs3811381	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:86,61:30:147:0.415:2	0/1:51,37:30:88:0.420:2	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.	./.	0/1:53,80:30:133:0.602:2	0/1:99,83:29:182:0.456:2
chr1	207791434	rs41274770	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,51:33:127:0.402:2	./.	./.	./.	./.
chr1	207795320	rs2296160	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:0,157:33:157:1.00:2	0/1:0,50:33:50:1.00:2	0/1:96,65:33:161:0.404:2	./.	0/1:0,152:33:153:1.00:2	./.	0/1:0,159:33:159:1.00:2	0/1:98,60:33:158:0.380:2	0/1:83,67:33:150:0.447:2	0/1:86,77:33:163:0.472:2
chr1	207850792	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:130,5:32:135:0.037:2	./.	./.	./.	0/1:152,6:32:158:0.038:2	0/1:182,8:32:190:0.042:2	0/1:149,9:32:158:0.057:2	0/1:181,7:33:188:0.037:2	./.	0/1:128,6:33:134:0.045:2	0/1:179,7:35:187:0.038:2
chr1	207850879	rs34509370	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,47:32:111:0.423:2	0/1:35,47:31:82:0.573:2	0/1:10,6:31:16:0.375:2	0/1:81,43:31:124:0.347:2	0/1:47,31:31:78:0.397:2	0/1:76,52:30:128:0.406:2	0/1:4,81:31:85:0.953:2	0/1:81,49:31:130:0.377:2	0/1:88,59:32:147:0.401:2	./.	./.
chr1	207851554	rs72468037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:32:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207851611	rs2296158	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:1,57:30:58:0.983:2	0/1:2,15:30:17:0.882:2	0/1:76,67:30:143:0.469:2	0/1:68,47:29:116:0.409:2	0/1:75,66:30:141:0.468:2	0/1:0,99:30:99:1.00:2	0/1:92,65:30:157:0.414:2	0/1:74,90:31:164:0.549:2	0/1:79,71:30:150:0.473:2	./.
chr1	207857222	rs41314532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,35:31:93:0.376:2	./.	./.	./.	./.
chr1	207857254	rs3085	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207867854	rs41303261	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,16:30:44:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207868022	rs72468038	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:31:27:0.593:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207871016	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,6:32:156:0.038:2	./.	./.	./.	./.	./.
chr1	207872595	rs12729569	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,88:33:183:0.481:2	0/1:80,80:32:160:0.500:2	0/1:16,30:33:46:0.652:2	0/1:93,100:33:193:0.518:2	0/1:73,43:32:116:0.371:2	0/1:105,72:32:177:0.407:2	0/1:2,115:33:117:0.983:2	0/1:90,94:33:184:0.511:2	0/1:105,85:33:190:0.447:2	./.	./.
chr1	207874888	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,8:32:197:0.041:2	0/1:189,6:31:195:0.031:2
chr1	207881557	rs6683902	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,65:32:161:0.404:2	0/1:83,66:32:149:0.443:2	0/1:0,52:32:52:1.00:2	0/1:120,65:32:185:0.351:2	./.	0/1:102,91:32:193:0.472:2	0/1:109,85:32:194:0.438:2	./.	0/1:124,64:33:188:0.340:2	0/1:2,171:32:173:0.988:2	./.
chr1	207890866	rs2796257	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,42:33:93:0.452:2	0/1:27,24:32:51:0.471:2	./.	0/1:83,41:32:124:0.331:2	0/1:1,46:32:47:0.979:2	0/1:56,43:32:99:0.434:2	0/1:31,36:33:67:0.537:2	0/1:3,91:32:94:0.968:2	0/1:50,37:33:87:0.425:2	./.	0/1:0,114:33:114:1.00:2
chr1	207941191	rs2724374	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,26:31:26:1.00:2	0/1:0,25:28:25:1.00:2	0/1:8,13:30:21:0.619:2	0/1:0,17:32:17:1.00:2	0/1:13,7:31:20:0.350:2	0/1:0,38:32:38:1.00:2	0/1:13,6:31:19:0.316:2	./.
chr1	208063067	rs2179634	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,30:30:57:0.526:2	0/1:16,16:31:32:0.500:2	0/1:0,13:29:13:1.00:2	0/1:32,20:30:52:0.385:2	0/1:25,17:30:42:0.405:2	0/1:33,34:30:67:0.507:2	0/1:27,12:29:39:0.308:2	0/1:35,16:29:51:0.314:2	0/1:44,26:32:70:0.371:2	0/1:20,13:31:33:0.394:2	./.
chr1	208207839	rs3736963	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,24:31:54:0.444:2	0/1:11,11:32:22:0.500:2	0/1:1,3:27:4:0.750:2	0/1:31,31:31:62:0.500:2	./.	0/1:0,54:31:54:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,67:32:67:1.00:2	0/1:27,32:33:59:0.542:2	0/1:24,21:32:45:0.467:2	0/1:0,47:32:47:1.00:2
chr1	208272313	rs200698765	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,13:17:41:0.317:2	0/1:25,8:18:33:0.242:2	0/1:6,3:27:9:0.333:2	0/1:32,22:20:54:0.407:2	0/1:50,34:16:85:0.405:2	0/1:49,26:18:75:0.347:2	0/1:48,32:17:80:0.400:2	0/1:50,37:17:87:0.425:2	0/1:64,26:14:90:0.289:2	0/1:34,22:18:56:0.393:2	0/1:46,28:18:75:0.378:2
chr1	208390086	rs1664227	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,15:32:25:0.600:2	0/1:25,24:29:49:0.490:2	0/1:19,13:30:32:0.406:2	./.	0/1:14,18:31:32:0.563:2	0/1:13,23:31:36:0.639:2	./.	0/1:13,13:30:26:0.500:2
chr1	208390155	rs4844657	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:30:38:0.474:2	0/1:6,9:29:15:0.600:2	./.	./.	./.	0/1:26,36:29:62:0.581:2	0/1:50,40:29:90:0.444:2	0/1:33,28:29:61:0.459:2	./.	./.	./.
chr1	208390162	rs4844658	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,20:33:44:0.455:2	0/1:8,10:32:18:0.556:2	./.	./.	./.	0/1:25,33:31:58:0.569:2	0/1:49,45:31:94:0.479:2	0/1:37,27:32:64:0.422:2	./.	./.	./.
chr1	208390469	rs3748735	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	0/1:30,32:30:62:0.516:2	./.	0/1:35,31:31:66:0.470:2	./.	./.	0/1:22,17:30:39:0.436:2	0/1:34,25:32:59:0.424:2
chr1	208390571	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.	./.
chr1	208391085	rs12120681	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,98:32:191:0.513:2	0/1:106,73:30:179:0.408:2	./.	0/1:103,81:32:185:0.440:2	./.	./.	./.
chr1	208391254	rs2782948	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	0/1:7,6:31:13:0.462:2	0/1:5,7:31:12:0.583:2	./.	0/1:6,4:30:10:0.400:2	0/1:7,10:32:17:0.588:2	./.	0/1:6,6:32:12:0.500:2
chr1	209782343	rs11119314	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,41:29:89:0.461:2	0/1:24,27:29:51:0.529:2	./.	0/1:66,50:29:116:0.431:2	0/1:43,25:27:68:0.368:2	./.	./.	0/1:0,84:28:84:1.00:2	0/1:0,114:29:114:1.00:2	0/1:58,42:28:100:0.420:2	./.
chr1	209785206	rs11119315	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:25,12:31:37:0.324:2	0/1:31,28:31:59:0.475:2	./.	./.	0/1:21,13:31:34:0.382:2	./.
chr1	209788703	rs1049607	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,21:30:39:0.538:2	0/1:10,7:28:17:0.412:2	0/1:0,5:29:5:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,79:28:79:1.00:2	0/1:23,33:29:56:0.589:2	0/1:41,27:29:68:0.397:2	./.	./.	0/1:15,13:26:28:0.464:2	./.
chr1	209795909	rs3179860	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,20:32:56:0.364:2	0/1:17,15:32:32:0.469:2	0/1:5,6:32:11:0.545:2	0/1:2,85:32:87:0.977:2	0/1:2,96:32:98:0.980:2	./.	./.	./.	./.	./.	./.
chr1	209796329	rs12748250	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,15:31:39:0.385:2	0/1:8,12:30:20:0.600:2	./.	0/1:1,33:31:34:0.971:2	0/1:3,19:31:22:0.864:2	./.	./.	./.	./.	./.	./.
chr1	209796950	rs202068754	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,21:9:136:0.154:2	./.	./.	./.	./.	0/1:85,10:23:96:0.105:2	./.
chr1	209799253	rs2179402	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,66:32:67:0.985:2	0/1:23,22:31:45:0.489:2	0/1:38,38:31:76:0.500:2	./.	0/1:21,20:32:41:0.488:2	0/1:0,30:31:30:1.00:2
chr1	209807972	rs1130667	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,39:33:40:0.975:2	0/1:0,33:33:33:1.00:2	./.	./.	./.	0/1:24,31:31:55:0.564:2	0/1:34,25:31:59:0.424:2	./.	./.	0/1:34,25:34:59:0.424:2	0/1:0,39:33:39:1.00:2
chr1	209811886	rs2076356	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,71:32:73:0.973:2	0/1:1,40:33:41:0.976:2	0/1:8,7:33:15:0.467:2	./.	./.	0/1:2,105:32:107:0.981:2	0/1:1,154:31:155:0.994:2	./.	./.	0/1:0,90:32:90:1.00:2	0/1:44,36:31:80:0.450:2
chr1	209823354	rs2228339	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:1,51:32:52:0.981:2	0/1:1,51:32:52:0.981:2	./.	./.	0/1:2,62:31:64:0.969:2	0/1:35,36:33:71:0.507:2	./.	./.
chr1	209849406	rs1473683	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,44:32:45:0.978:2	0/1:0,47:32:47:1.00:2	0/1:2,54:33:56:0.964:2	0/1:0,55:32:55:1.00:2	0/1:0,44:34:44:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,35:32:35:1.00:2
chr1	209849535	rs78075213	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:33:83:0.434:2	0/1:29,28:32:57:0.491:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	209905856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.
chr1	209907731	rs41283132	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,34:30:59:0.576:2	./.	./.	./.	./.
chr1	209933528	rs2076149	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,50:30:95:0.526:2	./.	./.	./.	./.	0/1:35,39:32:74:0.527:2	./.	./.
chr1	209933540	rs2076150	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,36:32:36:1.00:2	./.	0/1:56,48:33:104:0.462:2	./.	./.	./.	./.	./.	./.	0/1:39,39:33:78:0.500:2
chr1	209933660	rs2076151	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,43:31:78:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr1	209935895	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.	./.	./.
chr1	209936466	rs7548219	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,102:31:103:0.990:2	0/1:0,41:30:41:1.00:2	./.	0/1:41,41:29:82:0.500:2	./.	./.	./.	./.	./.	./.	0/1:47,43:31:90:0.478:2
chr1	209936673	rs7536882	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,19:33:19:1.00:2	./.	0/1:21,20:33:41:0.488:2	./.	./.	./.	./.	./.	./.	0/1:26,30:33:56:0.536:2
chr1	209936914	rs17015169	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,69:32:72:0.958:2	0/1:0,40:32:40:1.00:2	./.	0/1:57,42:33:99:0.424:2	./.	./.	./.	./.	./.	./.	0/1:43,41:32:84:0.488:2
chr1	209950760	rs669694	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,12:33:12:1.00:2	0/1:47,50:32:97:0.515:2	0/1:0,56:32:56:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,58:31:58:1.00:2	0/1:62,31:33:93:0.333:2
chr1	209957005	rs187773705	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	209961970	rs200166664	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,11:17:74:0.149:2	./.	./.	0/1:69,10:15:79:0.127:2	./.	./.	0/1:44,8:16:52:0.154:2	./.
chr1	209964080	rs2235371	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,41:31:92:0.446:2	./.	./.	./.	./.	0/1:68,56:32:124:0.452:2	./.	./.
chr1	209964141	rs41303263	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,27:31:55:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr1	209968684	rs2013162	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:30:12:0.250:2	0/1:66,70:32:136:0.515:2	./.	./.	0/1:105,83:32:188:0.441:2	0/1:80,86:32:166:0.518:2	0/1:0,95:33:95:1.00:2	./.	./.
chr1	210004199	rs585627	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,42:33:102:0.412:2	0/1:48,27:33:75:0.360:2	0/1:7,7:34:14:0.500:2	./.	0/1:0,58:32:58:1.00:2	0/1:0,77:32:77:1.00:2	0/1:1,53:34:54:0.981:2	0/1:3,88:33:91:0.967:2	0/1:71,51:34:122:0.418:2	0/1:0,61:32:61:1.00:2	0/1:65,57:33:122:0.467:2
chr1	210006603	rs656566	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,21:32:38:0.553:2	0/1:11,15:32:26:0.577:2	./.	./.	0/1:0,20:33:20:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,35:32:35:1.00:2	0/1:12,18:33:30:0.600:2	0/1:0,25:32:25:1.00:2	0/1:16,15:33:31:0.484:2
chr1	210194514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	210267817	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.
chr1	210273555	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	210334081	rs17188183	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2	./.	0/1:33,46:31:79:0.582:2	./.	./.
chr1	210407031	rs624706	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:2,16:30:18:0.889:2	0/1:0,6:28:6:1.00:2	0/1:0,52:29:52:1.00:2	./.	./.	./.	./.	./.	0/1:27,36:30:63:0.571:2	./.
chr1	210412843	rs61740848	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:31:31:0.484:2	./.	./.	./.	./.
chr1	210536278	rs11119469	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,8:32:17:0.471:2	0/1:18,9:31:27:0.333:2	0/1:9,5:32:14:0.357:2	0/1:11,9:32:20:0.450:2	./.	./.	0/1:37,6:33:43:0.140:2
chr1	210577831	rs34772809	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,28:31:97:0.292:2	0/1:66,34:31:100:0.340:2	0/1:94,32:30:126:0.254:2	0/1:74,51:31:125:0.408:2	./.	./.	0/1:69,36:30:105:0.343:2
chr1	210577873	rs2066721	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:33:90:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,8:32:8:1.00:2	0/1:43,53:33:96:0.552:2	0/1:61,32:32:93:0.344:2	0/1:50,31:32:81:0.383:2	0/1:78,23:33:101:0.228:2	0/1:81,40:33:121:0.331:2	0/1:72,48:33:120:0.400:2	0/1:55,37:33:92:0.402:2	0/1:1,91:32:92:0.989:2
chr1	210577901	rs34228541	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,29:30:83:0.349:2	0/1:49,30:30:79:0.380:2	0/1:63,32:30:95:0.337:2	0/1:75,39:29:114:0.342:2	./.	./.	0/1:39,47:29:86:0.547:2
chr1	210856818	rs114571785	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,71:33:188:0.378:2	./.	./.
chr1	210856989	rs1135318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,88:32:191:0.461:2	./.	./.	./.	./.
chr1	210857138	rs139659266	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:30:29:0.552:2	./.	./.	./.	./.	./.
chr1	210857209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:28:75:0.053:2	./.	./.	./.	./.	./.
chr1	210857457	rs1135317	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:28:20:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:0,14:28:15:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,18:30:18:1.00:2	0/1:3,5:31:8:0.625:2	0/1:3,9:32:12:0.750:2
chr1	211093346	rs6679399	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	211447625	rs11580084	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:151,4:31:155:0.026:2	0/1:0,43:32:43:1.00:2	0/1:1,166:32:167:0.994:2	0/1:108,82:32:190:0.432:2	0/1:124,72:31:196:0.367:2	0/1:3,154:32:157:0.981:2	0/1:4,172:32:176:0.977:2	0/1:116,75:33:191:0.393:2	./.	0/1:108,85:32:193:0.440:2
chr1	211451467	rs11577985	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:33:34:0.471:2	./.	./.	0/1:28,15:33:43:0.349:2	0/1:18,20:31:38:0.526:2	0/1:45,37:32:82:0.451:2
chr1	211486913	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:29:78:0.051:2
chr1	211533349	rs187481865	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,27:32:82:0.329:2	./.	./.	./.	./.
chr1	211533352	rs2230779	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,39:29:90:0.433:2	0/1:33,25:30:58:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	211654619	rs34049451	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,86:28:176:0.497:2	./.	./.	./.	./.	./.
chr1	211749259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.
chr1	211836789	rs12031285	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:33:24:0.542:2	./.	0/1:108,82:32:190:0.432:2	./.	./.	0/1:98,84:32:182:0.462:2	./.	./.	./.
chr1	211836926	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:126,4:34:130:0.031:2	./.	./.	0/1:122,4:35:127:0.032:2	./.	0/1:143,6:32:149:0.040:2	./.	./.	./.	./.	./.
chr1	211836927	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:123,4:31:127:0.031:2	./.	./.	0/1:123,4:33:127:0.031:2	./.	0/1:139,6:31:145:0.041:2	./.	./.	./.	./.	./.
chr1	211840498	rs2230489	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:33:22:0.364:2	./.	0/1:63,56:32:119:0.471:2	./.	./.	./.	./.	./.	./.
chr1	211842516	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,6:31:143:0.042:2	./.
chr1	211842550	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:33:146:0.041:2	./.
chr1	211842553	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,8:31:144:0.056:2	./.
chr1	211843672	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,6:31:127:0.047:2	./.	./.	./.	./.	./.
chr1	211843678	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,8:30:125:0.064:2	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2
chr1	211846876	rs701929	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:71,4:29:75:0.053:2	0/1:6,4:28:10:0.400:2	./.	0/1:61,34:28:95:0.358:2	0/1:71,54:29:125:0.432:2	0/1:1,83:29:84:0.988:2	0/1:0,118:29:118:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,91:29:91:1.00:2	0/1:75,58:29:133:0.436:2
chr1	211846891	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:33:130:0.038:2	./.	./.	./.	./.	./.
chr1	211847004	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	211847030	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	212273606	rs35137676	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:31:83:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr1	212273639	rs3135474	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,112:29:113:0.991:2	0/1:0,62:29:63:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,121:28:121:1.00:2	0/1:1,156:29:158:0.994:2	0/1:1,125:29:127:0.992:2	0/1:1,184:29:186:0.995:2	0/1:1,146:29:147:0.993:2	0/1:1,92:29:93:0.989:2	0/1:86,70:29:156:0.449:2
chr1	212274413	rs6540718	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:33:19:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,23:33:24:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,23:32:23:1.00:2
chr1	212502652	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,6:29:106:0.057:2	./.	./.	./.	./.	./.
chr1	212515613	rs1774249	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,13:31:13:1.00:2	0/1:26,12:31:38:0.316:2	0/1:20,12:32:32:0.375:2	./.	./.	./.	0/1:36,34:32:70:0.486:2
chr1	212558695	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	212560327	rs792449	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,145:33:145:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,169:33:169:1.00:2	0/1:0,126:33:127:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,104:32:104:1.00:2
chr1	212560350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.
chr1	212619339	rs4804	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,97:29:97:1.00:2	0/1:57,41:30:98:0.418:2	0/1:60,41:30:101:0.406:2	0/1:78,55:30:133:0.414:2	0/1:65,53:29:118:0.449:2	./.	./.	0/1:61,44:29:105:0.419:2
chr1	212788437	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	212798977	rs3122712	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:31:9:1.00:2	./.	0/1:23,18:32:41:0.439:2	0/1:10,18:31:28:0.643:2	0/1:14,18:32:32:0.563:2	0/1:34,31:31:65:0.477:2	./.	0/1:18,13:32:31:0.419:2	./.
chr1	212799535	rs114509113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:29:36:0.600:2	./.	./.	./.	./.	./.
chr1	212799870	rs3122713	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,46:31:115:0.400:2	0/1:33,32:32:65:0.492:2	0/1:0,10:32:10:1.00:2	0/1:97,49:33:146:0.336:2	0/1:96,85:32:181:0.470:2	0/1:74,68:32:142:0.479:2	0/1:91,92:32:183:0.503:2	0/1:1,161:32:162:0.994:2	0/1:0,132:32:132:1.00:2	0/1:77,47:32:124:0.379:2	0/1:0,99:31:99:1.00:2
chr1	212799949	rs3795842	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,41:31:103:0.398:2	0/1:47,29:31:76:0.382:2	0/1:5,5:31:10:0.500:2	0/1:75,53:31:128:0.414:2	./.	./.	0/1:71,68:31:139:0.489:2	0/1:3,126:31:129:0.977:2	0/1:2,104:32:106:0.981:2	0/1:69,50:29:119:0.420:2	0/1:0,104:31:105:1.00:2
chr1	212900487	rs2244935	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,47:33:47:1.00:2	0/1:20,9:33:29:0.310:2	0/1:0,47:32:47:1.00:2	0/1:0,25:33:25:1.00:2	0/1:2,48:32:50:0.960:2	0/1:36,26:33:62:0.419:2	0/1:0,48:32:48:1.00:2	0/1:0,38:33:38:1.00:2
chr1	212911836	rs15702	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:44,28:30:72:0.389:2	0/1:37,21:30:58:0.362:2	0/1:39,39:30:78:0.500:2	0/1:0,46:30:46:1.00:2	0/1:34,54:30:88:0.614:2	./.	0/1:51,27:30:78:0.346:2	0/1:2,96:30:98:0.980:2
chr1	212965095	rs17856201	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:27:30:0.467:2	./.	./.	./.	./.
chr1	212965284	rs61736926	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	0/1:59,53:30:112:0.473:2	./.	./.	0/1:49,55:32:104:0.529:2	./.
chr1	212985592	rs78095001	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:30:21:0.190:2	./.	./.	./.	./.	./.	./.	0/1:36,20:31:56:0.357:2	./.
chr1	213009469	rs10864004	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,82:33:176:0.466:2	0/1:45,56:31:101:0.554:2	0/1:0,8:32:8:1.00:2	0/1:88,106:32:194:0.546:2	0/1:79,74:33:153:0.484:2	0/1:101,67:32:168:0.399:2	0/1:1,127:33:128:0.992:2	0/1:122,67:32:189:0.354:2	./.	./.	0/1:0,171:33:171:1.00:2
chr1	213031948	rs11120047	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,8:31:9:0.889:2	0/1:0,5:33:5:1.00:2	./.	./.	0/1:2,3:27:5:0.600:2	0/1:5,8:29:13:0.615:2	./.	0/1:2,2:35:4:0.500:2	./.
chr1	213058739	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:88:0.046:2
chr1	213061308	rs17677416	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,80:33:168:0.476:2
chr1	213068404	rs17019870	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:32:47:0.532:2	0/1:23,21:33:44:0.477:2	./.	./.	./.	0/1:36,44:32:80:0.550:2	./.	0/1:34,42:33:76:0.553:2	0/1:31,41:33:72:0.569:2	0/1:35,40:32:77:0.533:2	./.
chr1	213068595	rs3207090	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:47,59:31:106:0.557:2	0/1:50,47:31:98:0.485:2	0/1:59,65:31:124:0.524:2	0/1:37,45:32:82:0.549:2	0/1:64,50:31:114:0.439:2	./.	0/1:48,51:32:99:0.515:2	0/1:2,96:32:98:0.980:2
chr1	213147400	rs35976699	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.	./.
chr1	213303168	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.
chr1	213414090	rs56183862	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,33:33:78:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr1	214492286	rs1134647	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,102:31:102:1.00:2	0/1:2,104:32:106:0.981:2	0/1:1,132:31:133:0.992:2	./.	0/1:0,106:31:106:1.00:2	0/1:82,53:32:135:0.393:2
chr1	214507580	rs34259050	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,67:30:112:0.598:2	./.	./.	./.	./.	./.
chr1	214542819	rs1135352	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,42:33:93:0.452:2	0/1:23,37:32:60:0.617:2	0/1:0,15:33:15:1.00:2	0/1:37,33:32:70:0.471:2	0/1:0,74:32:75:1.00:2	0/1:49,51:33:100:0.510:2	0/1:2,68:32:70:0.971:2	./.	./.	0/1:1,100:32:101:0.990:2	0/1:57,52:32:109:0.477:2
chr1	214564340	rs7550799	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,32:32:72:0.444:2	0/1:17,21:31:38:0.553:2	0/1:0,8:31:8:1.00:2	0/1:40,26:32:66:0.394:2	0/1:0,31:32:31:1.00:2	0/1:16,24:31:40:0.600:2	0/1:0,30:31:30:1.00:2	./.	./.	0/1:0,65:32:65:1.00:2	0/1:32,28:31:60:0.467:2
chr1	214571251	rs11580603	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:12,13:31:25:0.520:2	0/1:5,6:33:11:0.545:2	0/1:16,10:33:26:0.385:2	0/1:0,14:33:14:1.00:2	./.	./.	0/1:12,18:32:30:0.600:2	./.
chr1	214575122	rs17022807	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:31:55:0.455:2	0/1:20,13:31:33:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	214625240	rs148513026	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,68:33:107:0.636:2	./.	./.	./.	./.
chr1	214638018	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.	./.	./.	./.	./.
chr1	214787130	rs2070064	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,22:32:68:0.324:2	0/1:21,26:32:47:0.553:2	0/1:6,12:31:18:0.667:2	0/1:55,38:30:93:0.409:2	0/1:35,29:31:64:0.453:2	0/1:36,34:31:70:0.486:2	0/1:2,39:32:41:0.951:2	0/1:34,41:32:75:0.547:2	0/1:57,54:31:111:0.486:2	./.	0/1:1,110:31:111:0.991:2
chr1	214811244	rs2070065	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.	0/1:72,29:32:101:0.287:2	./.	./.	./.	0/1:87,97:34:184:0.527:2	./.	./.
chr1	214813487	rs2070066	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,13:31:30:0.433:2	./.	./.	./.	./.	./.	./.
chr1	214813782	rs3795524	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,31:32:88:0.352:2	./.	./.	./.	./.	./.	./.
chr1	214813941	rs3795523	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,30:28:67:0.448:2	./.	./.	./.	./.	./.	./.
chr1	214814059	rs61732042	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:28:10:0.500:2	./.	./.	./.	./.	./.	0/1:71,22:33:93:0.237:2	./.	./.
chr1	214814125	rs3795522	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,27:32:70:0.386:2	./.	./.	./.	./.	./.	./.
chr1	214814571	rs3795521	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,13:32:32:0.406:2	0/1:17,4:32:21:0.190:2	./.	0/1:17,11:32:28:0.393:2	0/1:12,13:31:25:0.520:2	0/1:17,15:30:32:0.469:2	0/1:0,20:31:20:1.00:2	0/1:11,4:31:15:0.267:2	0/1:22,15:32:37:0.405:2	./.	0/1:0,28:32:28:1.00:2
chr1	214814582	rs3795520	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,13:32:29:0.448:2	./.	./.	./.	./.	./.	./.
chr1	214814733	rs3795519	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,19:31:54:0.352:2	./.	./.	./.	./.	./.	./.
chr1	214814767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.
chr1	214814778	rs3795518	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	./.	./.	./.	./.	./.	./.
chr1	214814995	rs12067133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,56:31:96:0.583:2	./.	./.	./.	./.	./.	./.
chr1	214815916	rs3795517	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.	./.	./.	./.	./.	./.
chr1	214816142	rs3795516	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,15:32:42:0.357:2	./.	./.	./.	./.	./.	./.
chr1	214816224	rs2666839	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:21,14:31:35:0.400:2	./.	./.	./.	0/1:40,12:31:52:0.231:2	./.	./.
chr1	214816297	rs3795514	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:32:31:0.355:2	./.	./.	./.	./.	./.	./.
chr1	214816574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:31:95:0.053:2	./.	./.	./.	./.	./.
chr1	214818215	rs3748692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,22:31:54:0.407:2	./.	./.	./.	./.	./.	./.
chr1	214818223	rs3748693	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:34,24:31:58:0.414:2	./.	./.	./.	0/1:52,36:32:88:0.409:2	./.	./.
chr1	214818614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:30:19:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	214818846	rs3790646	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,35:31:63:0.556:2	./.	./.	./.	./.	./.	./.
chr1	214818945	rs3790647	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,58:32:86:0.674:2	./.	./.	./.	./.	./.	./.
chr1	214819301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.
chr1	214819328	rs3748695	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,32:31:88:0.364:2	./.	./.	./.	./.	./.	./.
chr1	214819587	rs12058704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,20:29:46:0.435:2	./.	./.	./.	./.	./.	./.
chr1	214819980	rs3748696	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,50:31:71:0.704:2	./.	./.	./.	./.	./.	./.
chr1	214820099	rs3748697	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,13:33:42:0.310:2	0/1:9,11:31:20:0.550:2	./.	0/1:19,25:33:44:0.568:2	0/1:23,21:31:44:0.477:2	0/1:21,20:32:41:0.488:2	0/1:0,38:33:38:1.00:2	0/1:25,29:31:54:0.537:2	0/1:36,27:33:63:0.429:2	./.	0/1:1,75:33:76:0.987:2
chr1	214820299	rs3748698	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,27:32:56:0.482:2	./.	./.	./.	./.	./.	./.
chr1	214820494	rs3790648	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,17:30:54:0.315:2	./.	./.	./.	./.	./.	./.
chr1	214820524	rs3790649	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,21:29:67:0.313:2	./.	./.	./.	./.	./.	./.
chr1	214825112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.
chr1	214826196	rs335524	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,26:32:56:0.464:2	0/1:9,12:32:21:0.571:2	./.	0/1:26,20:32:46:0.435:2	0/1:31,10:31:41:0.244:2	0/1:30,27:30:57:0.474:2	./.	0/1:23,14:32:37:0.378:2	./.	0/1:18,14:32:32:0.438:2	./.
chr1	214830617	rs438034	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,15:33:25:0.600:2	0/1:19,5:32:24:0.208:2	./.	0/1:30,23:32:53:0.434:2	0/1:0,31:31:31:1.00:2	0/1:19,24:30:43:0.558:2	./.	0/1:23,20:32:43:0.465:2	0/1:18,28:33:46:0.609:2	0/1:1,37:32:38:0.974:2	./.
chr1	214837110	rs7289	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,10:33:21:0.476:2	0/1:4,3:33:7:0.429:2	./.	0/1:9,7:32:16:0.438:2	0/1:0,16:32:16:1.00:2	0/1:4,6:33:10:0.600:2	./.	0/1:7,3:32:10:0.300:2	0/1:6,5:32:11:0.455:2	0/1:0,10:31:10:1.00:2	./.
chr1	215741053	rs2275768	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.
chr1	215759972	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.
chr1	215793623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.	./.	./.	./.	./.	./.	./.
chr1	215793834	rs14137	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:31:33:0.364:2	0/1:0,15:30:15:1.00:2	./.	0/1:12,15:32:27:0.556:2	0/1:0,30:32:30:1.00:2	0/1:22,13:33:35:0.371:2	./.	0/1:24,13:33:37:0.351:2
chr1	215799210	rs77792891	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,58:31:148:0.392:2	./.
chr1	215848062	rs2009923	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,13:29:25:0.520:2	0/1:20,9:30:29:0.310:2	0/1:0,17:30:17:1.00:2	./.	0/1:16,14:32:30:0.467:2	0/1:16,8:32:24:0.333:2	0/1:13,4:33:17:0.235:2	./.
chr1	215848587	rs2797234	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,41:30:90:0.456:2	0/1:37,31:29:68:0.456:2	./.	./.	0/1:42,31:28:73:0.425:2	./.	0/1:4,75:29:79:0.949:2	0/1:72,72:29:145:0.500:2	./.	./.	0/1:72,83:29:155:0.535:2
chr1	215848641	rs2797235	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:28:103:1.00:2	0/1:0,57:29:57:1.00:2	0/1:7,8:28:15:0.533:2	0/1:53,60:29:113:0.531:2	0/1:32,27:29:59:0.458:2	./.	0/1:0,62:28:62:1.00:2	0/1:68,64:29:132:0.485:2	0/1:55,76:30:131:0.580:2	0/1:71,39:30:110:0.355:2	0/1:1,154:29:155:0.994:2
chr1	215901492	rs2820718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,49:31:102:0.480:2	./.	./.	./.
chr1	215901563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.
chr1	215914826	rs35309576	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:32:36:0.528:2	0/1:0,33:32:33:1.00:2	0/1:17,20:32:37:0.541:2	0/1:22,15:33:37:0.405:2	./.	0/1:18,22:33:40:0.550:2	./.	0/1:37,32:31:69:0.464:2
chr1	215916563	rs11120616	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,24:32:62:0.387:2	0/1:0,27:30:27:1.00:2	0/1:37,43:31:80:0.538:2	0/1:35,19:32:54:0.352:2	./.	0/1:42,25:33:67:0.373:2	./.	0/1:46,27:32:73:0.370:2
chr1	215960153	.	A	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,18:17:84:0.214:2	0/1:74,12:12:86:0.140:2	0/1:9,7:18:16:0.438:2	0/1:78,34:13:113:0.304:2	0/1:77,35:11:112:0.313:2	0/1:83,34:13:117:0.291:2	0/1:96,29:12:125:0.232:2	0/1:91,38:12:129:0.295:2	0/1:101,37:13:139:0.268:2	0/1:71,26:18:97:0.268:2	0/1:69,29:18:99:0.296:2
chr1	215960167	rs10864198	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,59:32:137:0.431:2	0/1:41,47:32:88:0.534:2	./.	0/1:67,65:31:132:0.492:2	0/1:2,116:32:118:0.983:2	0/1:76,82:32:158:0.519:2	0/1:58,83:32:141:0.589:2	0/1:71,80:32:151:0.530:2	0/1:80,71:33:151:0.470:2	./.	0/1:95,61:32:156:0.391:2
chr1	215987222	rs4129843	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr1	215990479	rs11120645	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,48:31:131:0.369:2
chr1	216011361	rs56032526	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,68:33:160:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr1	216011370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:31:173:0.023:2	./.	./.	./.
chr1	216011408	rs41277194	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,75:33:153:0.490:2
chr1	216011442	rs56056328	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:30:83:0.458:2	./.	0/1:21,23:30:44:0.523:2	./.
chr1	216051125	rs41277200	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,9:31:31:0.290:2	./.	./.	./.	./.	./.	./.	./.
chr1	216052345	rs56829872	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,82:33:163:0.503:2
chr1	216073425	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:29:68:0.059:2	./.	./.	./.	./.	./.	./.
chr1	216108128	rs111033394	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,13:33:25:0.520:2	./.	./.	./.	./.	./.	./.	./.
chr1	216144049	rs41277210	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,35:31:77:0.461:2	./.	./.	./.	./.	./.	0/1:51,31:32:82:0.378:2
chr1	216166454	rs41277212	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	216172380	rs10864219	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	0/1:0,31:31:31:1.00:2	0/1:47,27:31:74:0.365:2	./.	0/1:0,55:32:55:1.00:2	0/1:0,102:33:102:1.00:2	0/1:23,24:33:47:0.511:2	0/1:0,88:33:88:1.00:2
chr1	216219781	rs6657250	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,11:33:11:1.00:2	0/1:38,47:33:85:0.553:2	0/1:44,39:32:83:0.470:2	0/1:0,66:32:66:1.00:2	0/1:47,39:32:86:0.453:2	0/1:2,121:32:123:0.984:2	0/1:0,92:33:92:1.00:2	0/1:1,68:33:69:0.986:2	0/1:58,43:32:101:0.426:2
chr1	216258194	rs56110889	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,18:31:41:0.439:2	0/1:7,7:32:14:0.500:2	./.	0/1:16,9:30:25:0.360:2	./.	0/1:9,13:31:22:0.591:2	0/1:14,11:33:25:0.440:2	./.	./.	./.	./.
chr1	216258213	rs56222536	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:32:19:1.00:2	0/1:15,9:33:24:0.375:2	0/1:8,10:32:18:0.556:2	./.
chr1	216260080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.
chr1	216348764	rs1805049	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:82,45:33:127:0.354:2	0/1:31,45:33:76:0.592:2	0/1:2,25:33:27:0.926:2	./.	0/1:1,134:32:135:0.993:2	0/1:100,66:32:166:0.398:2	./.	./.	./.	0/1:52,61:33:113:0.540:2	0/1:1,166:32:167:0.994:2
chr1	216363590	rs56013136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	216424275	rs696723	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,62:29:145:0.428:2	./.	./.	./.	./.	./.	0/1:66,45:28:111:0.405:2	./.
chr1	216462662	rs1805048	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:31:87:0.425:2	0/1:59,45:31:104:0.433:2	0/1:34,45:32:79:0.570:2	./.	./.
chr1	216496947	rs1805050	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,120:32:121:0.992:2	./.	0/1:70,61:31:131:0.466:2	0/1:44,50:31:94:0.532:2	./.	0/1:86,82:33:169:0.488:2	0/1:48,45:31:93:0.484:2	./.
chr1	216592003	rs4253963	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:30:71:1.00:2	0/1:0,31:29:31:1.00:2	0/1:5,4:30:9:0.444:2	0/1:39,36:29:75:0.480:2	0/1:0,37:29:38:1.00:2	0/1:46,39:29:85:0.459:2	0/1:49,4:32:53:0.075:2	0/1:2,59:29:61:0.967:2	./.	0/1:34,39:29:73:0.534:2	0/1:0,80:29:82:1.00:2
chr1	216595306	rs10779261	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:31:87:0.989:2	0/1:0,54:31:54:1.00:2	0/1:6,5:31:11:0.455:2	0/1:60,46:30:106:0.434:2	0/1:0,52:30:52:1.00:2	0/1:44,37:30:81:0.457:2	./.	0/1:1,99:31:100:0.990:2	./.	0/1:45,36:31:81:0.444:2	0/1:0,100:31:100:1.00:2
chr1	216692669	rs945453	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,15:31:46:0.333:2	0/1:14,12:32:26:0.462:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,32:31:32:1.00:2	0/1:19,27:31:46:0.587:2	0/1:18,16:30:34:0.471:2	0/1:32,17:32:49:0.347:2	0/1:0,41:33:41:1.00:2	0/1:34,20:31:54:0.370:2	0/1:0,57:32:57:1.00:2
chr1	217604654	rs35737297	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,36:32:86:0.419:2	./.	./.	./.	./.	./.
chr1	217804325	rs944730	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,3:26:6:0.500:2	0/1:2,2:33:4:0.500:2	./.	0/1:6,4:30:10:0.400:2	./.	0/1:13,10:33:23:0.435:2	./.	./.	0/1:11,8:33:19:0.421:2	0/1:6,4:33:10:0.400:2	0/1:0,10:32:10:1.00:2
chr1	217824493	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.
chr1	217856626	rs12068167	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,46:32:112:0.411:2	./.	./.	./.	./.	./.	0/1:46,33:32:79:0.418:2	0/1:2,174:32:176:0.989:2
chr1	217915324	rs34347452	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:29:15:0.600:2	./.	./.	./.	./.	./.	0/1:15,11:31:26:0.423:2	0/1:1,35:31:36:0.972:2
chr1	217947738	rs6604561	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,27:32:53:0.509:2	0/1:17,9:32:26:0.346:2	0/1:0,9:31:9:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,21:30:21:1.00:2	0/1:18,11:31:29:0.379:2	0/1:0,47:32:47:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,45:32:45:1.00:2	0/1:20,20:32:40:0.500:2	0/1:0,43:31:43:1.00:2
chr1	218458715	rs114550993	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,51:31:97:0.526:2	./.	./.	./.	./.	./.
chr1	218475847	rs77979592	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,12:32:13:0.923:2	./.
chr1	218478411	rs11118075	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,51:32:108:0.472:2	./.	./.	./.	./.
chr1	218520185	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	./.	./.	./.
chr1	218610791	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.	./.	./.	./.	./.
chr1	218683528	rs7532546	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.	0/1:47,31:32:78:0.397:2	./.	./.	./.	./.	0/1:81,54:33:135:0.400:2	0/1:128,60:34:188:0.319:2
chr1	219383905	rs940570	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:33:142:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,83:33:83:1.00:2	0/1:3,126:32:129:0.977:2	0/1:1,135:33:136:0.993:2	0/1:0,120:33:120:1.00:2	0/1:0,133:34:133:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,198:33:198:1.00:2
chr1	220154768	rs1061160	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,48:31:98:0.490:2	./.	0/1:58,45:32:103:0.437:2	./.	0/1:56,41:32:97:0.423:2	./.	0/1:43,37:32:80:0.463:2
chr1	220162004	rs36122746	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	220197625	rs2230301	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:32:127:1.00:2	0/1:1,76:32:77:0.987:2	0/1:11,6:30:17:0.353:2	0/1:98,68:31:167:0.410:2	0/1:65,43:31:108:0.398:2	0/1:0,141:31:141:1.00:2	0/1:70,55:31:126:0.440:2	0/1:68,50:31:118:0.424:2	0/1:0,146:32:146:1.00:2	0/1:62,52:31:114:0.456:2	0/1:0,161:32:161:1.00:2
chr1	220232191	rs149911255	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:31:43:0.512:2	./.	./.	./.	./.	./.
chr1	220267581	rs149324758	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr1	220267669	rs116823205	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:31:47:0.489:2	./.
chr1	220269548	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:172:0.023:2
chr1	220275477	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,50:31:135:0.370:2
chr1	220275746	rs199601961	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:34:29:0.138:2	./.
chr1	220298664	rs78770848	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	220326671	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2
chr1	220330672	rs11547779	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,62:31:170:0.365:2	0/1:76,63:30:139:0.453:2	./.	0/1:90,84:30:174:0.483:2	./.	./.	./.	./.
chr1	220331205	rs2289189	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,15:31:41:0.366:2	0/1:14,13:32:27:0.481:2	./.	0/1:16,15:32:31:0.484:2	./.	./.	./.	./.
chr1	220373922	rs201407438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,63:33:181:0.348:2
chr1	220791729	rs36024488	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,9:30:28:0.321:2	./.	0/1:37,15:30:52:0.288:2	./.	./.	./.	./.
chr1	220804451	rs35322308	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,15:33:46:0.326:2	./.	0/1:28,19:33:47:0.404:2	./.	./.	./.	./.
chr1	220869990	rs112837785	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:34:99:0.040:2	./.	./.
chr1	220928313	rs12044903	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,31:31:90:0.344:2	./.	0/1:53,18:30:71:0.254:2	./.	./.
chr1	220928334	rs12048193	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,41:32:121:0.339:2	./.	0/1:57,26:33:83:0.313:2	./.	./.
chr1	220928376	rs371348	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,66:32:157:0.420:2	./.	0/1:64,38:32:102:0.373:2	./.	./.
chr1	220935081	rs2275575	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,31:32:78:0.397:2	./.	./.	./.	./.	./.	0/1:45,34:32:79:0.430:2	./.
chr1	220936372	rs3795535	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,41:33:104:0.394:2	./.	0/1:95,71:33:166:0.428:2	./.	./.
chr1	220955168	rs12030434	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,31:30:68:0.456:2	./.	0/1:80,66:31:146:0.452:2	./.	./.
chr1	220960457	rs79575000	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:32:17:0.353:2	./.	./.
chr1	220970028	rs2642438	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:27:85:1.00:2	0/1:1,52:29:53:0.981:2	0/1:0,15:28:15:1.00:2	0/1:0,101:27:101:1.00:2	./.	0/1:64,56:27:120:0.467:2	0/1:0,164:27:164:1.00:2	0/1:86,86:27:172:0.500:2	0/1:68,73:27:142:0.518:2	0/1:0,109:27:109:1.00:2	0/1:0,99:27:99:1.00:2
chr1	221053545	rs12141189	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	0/1:0,39:31:39:1.00:2	./.	./.	./.	0/1:7,18:31:25:0.720:2	0/1:5,6:30:11:0.545:2
chr1	221057646	rs2738755	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,40:31:71:0.571:2	0/1:28,25:31:53:0.472:2	0/1:3,10:28:14:0.769:2	./.	./.	./.	0/1:24,50:30:75:0.676:2	0/1:35,62:30:98:0.639:2	0/1:34,37:32:71:0.521:2	0/1:33,29:30:63:0.468:2	./.
chr1	221057662	rs3738182	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,10:29:12:0.833:2	./.	./.	./.	./.	0/1:36,49:29:85:0.576:2	0/1:34,27:31:61:0.443:2	0/1:25,30:30:55:0.545:2	./.
chr1	221057739	rs11578466	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,38:31:83:0.458:2	0/1:24,15:31:39:0.385:2	./.	./.	./.	./.	0/1:56,57:31:113:0.504:2	./.	./.	./.	./.
chr1	221912361	rs1141714	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,70:31:70:1.00:2	0/1:5,9:31:14:0.643:2	0/1:71,64:32:135:0.474:2	./.	0/1:53,43:31:97:0.448:2	0/1:1,82:31:83:0.988:2	0/1:68,63:31:131:0.481:2	0/1:0,143:33:143:1.00:2	0/1:0,116:31:116:1.00:2	0/1:67,60:32:127:0.472:2
chr1	221912808	rs1136448	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:72,60:30:132:0.455:2	0/1:35,35:32:70:0.500:2	./.	./.	./.	./.	0/1:92,71:31:163:0.436:2	0/1:105,71:32:176:0.403:2	0/1:1,158:32:159:0.994:2	0/1:93,72:31:165:0.436:2	0/1:97,54:30:151:0.358:2
chr1	222713501	rs3748663	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,85:31:86:0.988:2	0/1:40,45:33:85:0.529:2	0/1:18,21:32:39:0.538:2	./.
chr1	222713503	rs3748664	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,3:32:42:0.071:2	0/1:0,8:32:8:1.00:2	./.	0/1:31,18:32:49:0.367:2	./.	./.	./.	./.	./.	./.
chr1	222713621	rs3748665	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,79:32:80:0.988:2	0/1:42,47:33:90:0.528:2	0/1:33,23:33:56:0.411:2	./.
chr1	222713631	rs3748666	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:87,4:32:91:0.044:2	0/1:33,21:32:54:0.389:2	./.	./.	./.	./.	./.	./.
chr1	222717234	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.
chr1	222721288	rs4846382	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:38,31:32:69:0.449:2	0/1:2,56:30:58:0.966:2	./.	0/1:1,72:31:73:0.986:2	./.	0/1:0,71:33:71:1.00:2	0/1:23,28:32:51:0.549:2	0/1:36,34:32:70:0.486:2
chr1	222732027	rs76003336	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.	./.	./.	./.
chr1	222734722	rs200153576	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,9:17:46:0.196:2	./.	0/1:43,11:16:54:0.204:2	./.	0/1:28,6:18:34:0.176:2	0/1:51,5:23:56:0.089:2
chr1	222734803	rs1134898	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,35:33:74:0.473:2	0/1:30,20:32:50:0.400:2	0/1:52,33:32:85:0.388:2	0/1:2,53:32:55:0.964:2	./.	0/1:0,80:33:80:1.00:2	0/1:44,40:32:84:0.476:2	0/1:56,44:32:100:0.440:2
chr1	222737481	rs17464254	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	0/1:43,32:32:75:0.427:2	./.	./.	./.	./.	./.	./.
chr1	222743984	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,4:26:23:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	222798106	rs3008617	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,105:31:105:1.00:2
chr1	222801661	rs142088763	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,18:32:59:0.310:2	./.	./.	./.	./.
chr1	222801665	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,18:31:58:0.310:2	./.	./.	./.	./.
chr1	222802006	rs2936053	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,83:33:83:1.00:2
chr1	222802376	rs2936052	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,32:32:47:0.681:2	./.	./.	./.	./.	./.
chr1	222802517	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.
chr1	222802549	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:29:54:0.481:2	./.	./.	./.	./.	./.
chr1	222802803	rs3748626	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,17:29:48:0.354:2	0/1:7,7:26:14:0.500:2	./.	0/1:23,13:28:36:0.361:2	0/1:0,23:28:23:1.00:2	0/1:23,8:30:31:0.258:2	0/1:0,35:28:35:1.00:2	0/1:1,34:28:35:0.971:2	0/1:2,42:29:44:0.955:2	0/1:17,8:26:25:0.320:2	0/1:36,20:27:56:0.357:2
chr1	222802926	rs3008620	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,22:32:73:0.301:2	0/1:20,18:32:38:0.474:2	0/1:11,3:31:14:0.214:2	0/1:42,39:30:81:0.481:2	0/1:0,56:30:56:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,78:32:78:1.00:2	0/1:53,26:30:79:0.329:2	0/1:49,53:31:102:0.520:2
chr1	222803204	rs2936051	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,28:31:50:0.560:2	./.	./.	./.	./.	./.
chr1	222825403	rs3002150	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,52:31:52:1.00:2
chr1	222833538	rs2291835	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,70:32:149:0.470:2	./.	./.	./.
chr1	222833601	rs3002153	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,10:29:10:1.00:2	0/1:1,100:29:101:0.990:2	0/1:2,86:29:88:0.977:2	0/1:0,100:29:100:1.00:2	0/1:1,91:30:92:0.989:2	0/1:0,120:29:120:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,109:29:109:1.00:2
chr1	222838216	rs2936026	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,118:31:118:1.00:2	0/1:1,75:31:76:0.987:2	0/1:0,73:31:73:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,137:32:137:1.00:2
chr1	222843496	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	0/1:190,5:33:195:0.026:2	./.	./.
chr1	222843559	rs200516684	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,4:33:145:0.028:2	./.	./.	0/1:139,6:32:145:0.041:2	0/1:82,6:31:88:0.068:2	./.	0/1:108,5:32:113:0.044:2	0/1:144,5:32:149:0.034:2	0/1:138,10:31:148:0.068:2	./.	0/1:172,9:31:181:0.050:2
chr1	222849536	rs111707998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2
chr1	222885591	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	222919895	rs2378607	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,30:33:57:0.526:2	0/1:15,24:32:39:0.615:2	./.	0/1:29,21:32:50:0.420:2	0/1:0,17:32:17:1.00:2	0/1:26,22:33:48:0.458:2	0/1:0,44:33:44:1.00:2	0/1:1,53:32:54:0.981:2	0/1:2,51:33:53:0.962:2	0/1:33,27:33:60:0.450:2	0/1:42,20:31:62:0.323:2
chr1	222923351	rs6683071	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,82:29:82:1.00:2	0/1:64,41:29:105:0.390:2	0/1:0,81:30:81:1.00:2	0/1:2,94:29:96:0.979:2	0/1:0,89:29:89:1.00:2	0/1:2,74:29:76:0.974:2	0/1:0,72:30:72:1.00:2
chr1	223116240	rs61746477	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:32:112:0.455:2	0/1:50,51:32:101:0.505:2	./.
chr1	223176275	rs61738819	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,60:30:191:0.314:2	./.	0/1:117,79:32:196:0.403:2	./.	./.
chr1	223177194	rs201957626	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.
chr1	223177574	rs2609355	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,46:33:103:0.447:2	./.	./.	0/1:55,60:34:115:0.522:2	./.	0/1:55,72:33:127:0.567:2
chr1	223178478	rs9441940	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,79:32:165:0.479:2	./.	0/1:76,68:32:145:0.472:2	./.	./.
chr1	223178561	rs9441941	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:30:96:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,185:29:185:1.00:2	0/1:2,170:29:172:0.988:2	0/1:118,63:30:181:0.348:2	0/1:3,165:30:169:0.982:2	0/1:0,161:29:161:1.00:2	0/1:94,71:30:165:0.430:2	0/1:71,63:30:134:0.470:2	0/1:100,77:29:177:0.435:2
chr1	223283851	rs1053954	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:33:60:0.500:2	./.	0/1:38,45:34:83:0.542:2	./.	./.
chr1	223283910	rs7512943	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,60:33:60:1.00:2
chr1	223284069	rs56243703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,62:33:158:0.392:2	./.	./.	./.	./.	./.	./.	./.
chr1	223284124	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.	./.
chr1	223284214	rs142143294	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,54:31:146:0.375:2	./.
chr1	223284528	rs5744174	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,29:33:70:0.414:2	0/1:12,18:32:30:0.600:2	./.	./.	0/1:28,19:33:47:0.404:2	./.	./.	./.	0/1:51,33:34:84:0.393:2	0/1:0,53:32:53:1.00:2	0/1:54,27:33:81:0.333:2
chr1	223284599	rs2072493	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,46:31:91:0.511:2	0/1:48,55:33:103:0.534:2	0/1:3,82:33:85:0.965:2	./.	./.	./.
chr1	223285200	rs5744168	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	0/1:39,28:33:67:0.418:2
chr1	223285646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.
chr1	223285833	rs45528236	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,37:33:58:0.638:2	0/1:69,30:32:99:0.303:2
chr1	223286191	rs5744165	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:29:79:0.494:2
chr1	223566859	rs111306873	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.
chr1	223567267	rs6679661	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:31:41:0.488:2	0/1:17,11:31:29:0.393:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,13:33:47:0.277:2	./.
chr1	223567401	rs6689850	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:50,54:28:104:0.519:2	0/1:32,27:30:59:0.458:2	./.	./.	./.	./.	./.	./.	./.	0/1:63,48:29:111:0.432:2	./.
chr1	223567531	rs2298063	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:54,46:31:100:0.460:2	0/1:30,32:31:62:0.516:2	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:31:99:0.485:2	./.
chr1	223567803	rs10907376	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,7:30:20:0.350:2	0/1:9,10:31:19:0.526:2	./.	0/1:27,22:30:49:0.449:2	0/1:0,33:28:33:1.00:2	./.	0/1:9,9:29:18:0.500:2	./.	./.	./.	0/1:11,3:27:14:0.214:2
chr1	223567808	rs6682552	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:29:20:0.600:2	0/1:10,8:30:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.
chr1	223716508	rs4072247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,23:31:42:0.548:2	./.	./.	./.	./.	./.	./.
chr1	223717484	rs34158997	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,16:32:16:1.00:2	0/1:6,4:31:10:0.400:2	0/1:2,65:31:67:0.970:2	0/1:51,50:31:101:0.495:2	0/1:35,34:30:69:0.493:2	0/1:49,40:32:89:0.449:2	0/1:0,71:31:71:1.00:2	0/1:30,23:31:53:0.434:2	0/1:29,28:32:57:0.491:2	0/1:28,14:32:42:0.333:2
chr1	223718651	rs61823553	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,50:31:51:0.980:2	0/1:1,15:31:16:0.938:2	0/1:3,4:32:7:0.571:2	./.	./.	0/1:8,19:32:27:0.704:2	./.	0/1:0,24:31:24:1.00:2	./.	0/1:14,24:31:38:0.632:2	0/1:23,25:31:48:0.521:2
chr1	223718670	rs61823554	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,40:32:40:1.00:2	0/1:0,11:30:11:1.00:2	0/1:1,4:32:5:0.800:2	./.	./.	0/1:9,13:32:22:0.591:2	./.	0/1:0,15:31:15:1.00:2	./.	0/1:13,17:32:30:0.567:2	0/1:17,21:32:38:0.553:2
chr1	223722760	rs34588801	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:31:43:0.535:2	./.	./.	./.	./.	./.	./.	./.
chr1	223813586	rs35539373	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,24:29:59:0.407:2	0/1:19,19:31:38:0.500:2	0/1:0,2:28:2:1.00:2	0/1:1,82:30:83:0.988:2	0/1:22,24:28:46:0.522:2	./.	0/1:41,36:30:77:0.468:2	0/1:54,36:29:90:0.400:2	0/1:0,74:31:74:1.00:2	0/1:27,14:30:41:0.341:2	0/1:31,35:30:66:0.530:2
chr1	223816383	rs71644745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,15:32:55:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr1	223900408	rs25655	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,28:31:28:1.00:2
chr1	223905532	rs17596	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,17:32:33:0.515:2	0/1:15,13:31:28:0.464:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:0,40:31:40:1.00:2	0/1:25,16:31:41:0.390:2	0/1:1,36:31:37:0.973:2	0/1:22,27:32:49:0.551:2	0/1:28,17:32:45:0.378:2	0/1:0,51:31:51:1.00:2
chr1	223933061	rs17597	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,43:31:97:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr1	223933079	rs17598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,42:31:91:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr1	223934720	rs17600	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,6:32:6:1.00:2	0/1:31,24:32:55:0.436:2	0/1:1,59:31:60:0.983:2	0/1:0,68:31:68:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,76:31:76:1.00:2
chr1	223947088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223951841	rs751128	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:29:13:0.615:2	0/1:88,82:29:170:0.482:2	./.	0/1:86,91:30:177:0.514:2	0/1:90,92:30:182:0.505:2	0/1:0,192:30:192:1.00:2	0/1:89,86:31:175:0.491:2	0/1:65,81:30:146:0.555:2	./.
chr1	223954080	rs17599	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,65:33:122:0.533:2	0/1:26,24:33:50:0.480:2	./.	./.	0/1:58,52:32:110:0.473:2	0/1:75,45:32:120:0.375:2	0/1:52,65:32:117:0.556:2	./.	0/1:84,81:33:165:0.491:2	./.	./.
chr1	223959959	rs1153949	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:30:40:0.550:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223971997	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,14:17:136:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223980207	rs1153936	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:34:65:0.400:2	0/1:30,29:32:59:0.492:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223983630	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,38:33:74:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr1	223989966	rs1153933	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,19:32:55:0.345:2	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223991119	rs34683843	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,33:32:81:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr1	224001963	rs76208122	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:29:23:0.391:2	./.	./.	./.	./.	./.
chr1	224363674	rs200913375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,14:17:87:0.161:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	224363683	rs45522536	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,75:32:76:0.987:2	0/1:0,35:31:35:1.00:2	./.	./.	0/1:64,30:31:94:0.319:2	./.	0/1:50,32:32:82:0.390:2	./.	./.	./.	./.
chr1	224377996	rs61732863	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,46:32:106:0.434:2	./.	./.	./.	./.	./.
chr1	224415342	rs41271483	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,18:33:28:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	224492746	rs3754090	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:32:141:1.00:2	0/1:0,99:31:100:1.00:2	0/1:0,15:31:15:1.00:2	0/1:103,92:31:195:0.472:2	0/1:0,106:30:106:1.00:2	0/1:1,188:30:189:0.995:2	0/1:0,156:30:156:1.00:2	0/1:2,189:31:191:0.990:2	0/1:0,175:31:175:1.00:2	0/1:2,115:31:118:0.983:2	0/1:0,183:31:183:1.00:2
chr1	224495852	rs7534447	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:32:144:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,14:29:14:1.00:2	0/1:93,96:31:189:0.508:2	0/1:0,78:31:78:1.00:2	0/1:1,153:31:154:0.994:2	0/1:1,115:31:117:0.991:2	0/1:0,164:31:164:1.00:2	0/1:1,123:32:124:0.992:2	0/1:0,153:31:153:1.00:2	0/1:0,183:32:183:1.00:2
chr1	224517842	rs2896990	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:29:14:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:14,24:28:38:0.632:2	0/1:0,50:28:50:1.00:2	0/1:0,29:27:29:1.00:2	0/1:0,46:27:46:1.00:2	0/1:1,41:26:42:0.976:2	0/1:1,43:30:44:0.977:2	0/1:0,21:29:21:1.00:2	0/1:1,37:28:38:0.974:2
chr1	224586628	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	224599205	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.
chr1	224619211	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	224872473	rs3738363	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,85:28:196:0.434:2	./.	0/1:109,88:28:198:0.447:2	./.	./.	./.	0/1:0,184:29:184:1.00:2	0/1:98,93:28:191:0.487:2
chr1	225142710	rs41267347	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:31:87:0.540:2	0/1:35,25:30:60:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225152253	rs41267349	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,44:33:79:0.557:2	0/1:28,20:32:48:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225195154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.
chr1	225211422	rs75568712	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:33:130:0.423:2	0/1:44,40:32:84:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225230608	rs2501107	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,79:32:81:0.975:2	0/1:0,35:32:35:1.00:2	0/1:11,4:31:15:0.267:2	0/1:1,93:31:94:0.989:2	0/1:2,43:31:45:0.956:2	0/1:0,69:30:69:1.00:2	0/1:36,19:31:55:0.345:2	0/1:0,67:31:67:1.00:2	0/1:2,87:32:89:0.978:2	0/1:0,75:31:75:1.00:2	0/1:0,119:32:119:1.00:2
chr1	225266966	rs3105559	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,17:32:17:1.00:2	0/1:2,3:33:5:0.600:2	0/1:0,37:33:37:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,28:32:28:1.00:2	0/1:25,25:32:51:0.500:2	0/1:1,34:33:35:0.971:2	0/1:0,34:33:34:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,57:32:57:1.00:2
chr1	225268098	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,33:30:84:0.398:2	./.	./.	./.
chr1	225268343	rs3128651	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,39:32:39:1.00:2	0/1:2,7:32:9:0.778:2	0/1:0,47:32:47:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,66:32:66:1.00:2	0/1:27,27:32:54:0.500:2	0/1:2,53:31:55:0.964:2	0/1:0,82:32:82:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,78:32:78:1.00:2
chr1	225268346	rs3128652	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,39:31:39:1.00:2	0/1:1,7:31:8:0.875:2	0/1:0,48:31:48:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,70:31:70:1.00:2	0/1:27,27:32:54:0.500:2	0/1:2,54:31:56:0.964:2	0/1:0,81:32:81:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,79:32:79:1.00:2
chr1	225270409	rs3128655	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,23:31:47:0.489:2	0/1:23,12:31:35:0.343:2	0/1:0,4:28:4:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,39:29:39:1.00:2	0/1:1,60:29:61:0.984:2	0/1:20,20:28:40:0.500:2	0/1:1,65:29:66:0.985:2	0/1:0,53:31:53:1.00:2	0/1:2,33:29:35:0.943:2	0/1:0,90:30:90:1.00:2
chr1	225273248	rs3128658	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,47:32:47:1.00:2	0/1:8,4:31:12:0.333:2	0/1:0,41:31:41:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,57:31:57:1.00:2	0/1:25,28:31:53:0.528:2	0/1:1,68:31:69:0.986:2	0/1:0,55:32:55:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,76:32:76:1.00:2
chr1	225288534	rs3105571	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	0/1:31,43:32:74:0.581:2	./.	./.	./.	./.
chr1	225306982	rs150618371	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:31:50:0.500:2	./.	./.	./.	./.
chr1	225311312	rs76946626	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,38:31:62:0.613:2	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225328440	rs75827633	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	0/1:4,4:34:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225373072	rs61851487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,14:33:47:0.298:2	./.	./.	./.	./.
chr1	225380564	rs191528375	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225446838	rs41303311	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,48:33:91:0.533:2	./.	./.
chr1	225452983	rs76767146	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,27:32:84:0.321:2	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225454403	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:32:50:0.520:2	./.	./.
chr1	225463772	rs581675	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.
chr1	225490915	rs140066130	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,68:33:123:0.553:2	./.	./.
chr1	225495168	rs112172758	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:32:72:0.403:2	0/1:19,17:32:36:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225506294	rs10495237	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:29:37:0.378:2	./.	./.	./.	./.
chr1	225506328	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.
chr1	225519246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr1	225521101	rs41268715	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:33:54:0.537:2	0/1:13,25:32:38:0.658:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225528183	rs3856145	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,135:31:137:0.985:2	0/1:73,28:31:101:0.277:2	0/1:96,52:31:148:0.351:2	0/1:73,30:31:103:0.291:2	0/1:115,48:31:163:0.294:2	0/1:131,63:32:194:0.325:2	./.	0/1:2,157:31:159:0.987:2
chr1	225533684	rs6667999	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,106:30:106:1.00:2	0/1:31,26:28:57:0.456:2	0/1:51,35:29:87:0.407:2	0/1:47,25:30:72:0.347:2	0/1:42,42:30:84:0.500:2	0/1:51,62:31:113:0.549:2	./.	0/1:0,94:30:94:1.00:2
chr1	225533731	rs12742757	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,45:30:59:0.763:2	./.	./.	./.	./.
chr1	225533931	rs17522489	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,37:30:61:0.607:2	0/1:21,20:32:41:0.488:2	./.	0/1:31,32:31:63:0.508:2
chr1	225534219	rs7527925	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,134:33:134:1.00:2	0/1:60,38:32:98:0.388:2	0/1:90,61:32:151:0.404:2	0/1:51,48:33:99:0.485:2	0/1:86,73:32:159:0.459:2	0/1:86,73:34:159:0.459:2	./.	0/1:0,167:33:167:1.00:2
chr1	225534348	rs7535953	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,52:31:54:0.963:2	0/1:21,24:31:45:0.533:2	0/1:38,35:31:73:0.479:2	0/1:24,26:31:50:0.520:2	0/1:33,44:31:77:0.571:2	0/1:33,35:32:68:0.515:2	./.	0/1:0,95:31:95:1.00:2
chr1	225555512	rs11578981	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,11:32:30:0.367:2	0/1:9,8:33:17:0.471:2	./.	0/1:0,27:33:27:1.00:2	0/1:8,8:32:16:0.500:2	./.	0/1:6,17:33:23:0.739:2	0/1:3,27:32:30:0.900:2	0/1:18,10:33:28:0.357:2	0/1:0,12:33:12:1.00:2	./.
chr1	225555602	rs12737248	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,21:32:39:0.538:2	0/1:10,7:30:17:0.412:2	0/1:1,5:33:6:0.833:2	0/1:0,33:33:33:1.00:2	0/1:14,15:33:29:0.517:2	./.	0/1:16,4:30:20:0.200:2	0/1:6,53:32:59:0.898:2	0/1:42,17:33:59:0.288:2	0/1:0,24:32:24:1.00:2	./.
chr1	225565015	rs3856154	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,53:32:117:0.453:2	0/1:43,26:32:69:0.377:2	0/1:0,15:32:15:1.00:2	0/1:0,92:32:92:1.00:2	0/1:59,47:31:106:0.443:2	0/1:62,66:31:128:0.516:2	0/1:72,71:33:143:0.497:2	0/1:1,128:33:129:0.992:2	0/1:91,60:33:151:0.397:2	0/1:2,93:32:95:0.979:2	./.
chr1	225565073	rs3856155	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,42:30:100:0.420:2	0/1:41,22:31:63:0.349:2	0/1:0,10:30:10:1.00:2	0/1:0,74:30:75:1.00:2	0/1:40,40:29:81:0.500:2	0/1:59,56:29:115:0.487:2	0/1:60,37:30:97:0.381:2	0/1:4,91:31:95:0.958:2	0/1:81,58:31:139:0.417:2	0/1:1,85:31:86:0.988:2	./.
chr1	225569241	rs950210	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,38:33:84:0.452:2	0/1:34,34:32:68:0.500:2	0/1:0,19:32:19:1.00:2	0/1:4,105:32:109:0.963:2	0/1:17,35:32:52:0.673:2	0/1:45,48:32:93:0.516:2	0/1:28,45:32:73:0.616:2	0/1:0,128:32:128:1.00:2	0/1:51,81:33:132:0.614:2	0/1:0,91:33:91:1.00:2	./.
chr1	225580032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.	./.
chr1	225607144	rs2230419	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,52:31:53:0.981:2	0/1:0,47:31:47:1.00:2	0/1:48,15:31:63:0.238:2	0/1:0,33:31:33:1.00:2	0/1:0,70:31:70:1.00:2	0/1:40,27:32:67:0.403:2	0/1:0,45:32:45:1.00:2	0/1:69,43:31:112:0.384:2
chr1	225609884	rs1056608	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,26:30:28:0.929:2	0/1:0,13:32:13:1.00:2	0/1:0,4:24:4:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,41:28:41:1.00:2	0/1:19,12:29:31:0.387:2	0/1:1,39:29:40:0.975:2	0/1:0,22:28:22:1.00:2	0/1:16,15:30:31:0.484:2	0/1:0,32:29:33:1.00:2	0/1:14,15:29:29:0.517:2
chr1	225611661	rs1056607	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,41:31:95:0.432:2	0/1:25,29:32:54:0.537:2	0/1:10,7:30:17:0.412:2	0/1:0,110:31:110:1.00:2	0/1:26,35:30:61:0.574:2	0/1:56,26:30:82:0.317:2	0/1:31,46:31:77:0.597:2	0/1:0,91:30:91:1.00:2	0/1:46,47:32:93:0.505:2	0/1:0,55:30:55:1.00:2	0/1:1,90:31:91:0.989:2
chr1	225685473	rs17501138	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,48:33:109:0.440:2
chr1	225688725	rs141150172	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,25:31:66:0.379:2	./.	./.	./.	./.	./.	./.
chr1	225705501	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,40:31:122:0.328:2	./.	./.	./.	./.	./.
chr1	225706943	rs1340868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,42:33:119:0.353:2
chr1	225707051	rs140432837	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.
chr1	225707087	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,8:32:93:0.086:2	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226019497	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	./.	./.	./.
chr1	226019500	rs2234698	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226019633	rs1051740	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,27:30:49:0.551:2	0/1:17,19:32:36:0.528:2	0/1:4,3:32:7:0.429:2	0/1:45,22:32:67:0.328:2	0/1:31,29:30:60:0.483:2	0/1:26,34:31:60:0.567:2	./.	./.	./.	./.	0/1:0,85:30:85:1.00:2
chr1	226019653	rs1131873	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:31:62:0.387:2	0/1:1,16:31:17:0.941:2	./.	./.	./.	./.
chr1	226026406	rs2234922	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:27:48:0.375:2	0/1:18,12:27:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226027659	rs2292568	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226032229	rs1051741	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	0/1:11,21:32:32:0.656:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226034774	rs2292559	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226040404	rs1009668	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:29:22:0.409:2	0/1:92,66:31:158:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr1	226041438	rs2292556	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:32:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226041489	rs61753643	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,35:30:82:0.427:2	./.	./.	./.	./.	./.
chr1	226044391	rs140423726	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,7:32:25:0.280:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226046974	rs2292561	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226054333	rs45492299	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,32:33:76:0.421:2	0/1:34,15:32:49:0.306:2	./.	./.	0/1:65,47:31:112:0.420:2	0/1:49,49:32:98:0.500:2	0/1:68,39:32:107:0.364:2	./.	./.	./.	0/1:0,75:33:75:1.00:2
chr1	226055595	rs2292564	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:31:39:1.00:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:49,37:31:86:0.430:2	0/1:36,29:30:65:0.446:2	0/1:62,45:31:107:0.421:2	./.	./.	./.	0/1:0,79:32:79:1.00:2
chr1	226074563	rs360057	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:32:17:0.412:2	0/1:73,68:31:142:0.482:2	0/1:68,43:32:111:0.387:2	./.	./.	0/1:91,75:32:166:0.452:2	0/1:0,124:33:124:1.00:2	./.	./.
chr1	226076669	rs41310561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226108200	rs73131849	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:28:7:0.714:2	0/1:1,46:31:47:0.979:2	./.	./.	./.	./.	./.	./.	./.
chr1	226125385	rs2295418	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,38:31:87:0.437:2	0/1:39,34:32:73:0.466:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226175904	rs41268719	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,66:30:138:0.478:2	./.	./.	./.	./.	./.	./.	./.
chr1	226340217	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2
chr1	226352498	rs111701159	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,82:32:182:0.451:2	0/1:74,48:31:122:0.393:2	0/1:21,20:32:41:0.488:2	0/1:1,178:32:179:0.994:2	0/1:66,105:32:171:0.614:2	0/1:76,101:32:177:0.571:2	0/1:104,90:32:194:0.464:2	0/1:1,165:32:166:0.994:2	0/1:106,84:33:190:0.442:2	0/1:76,104:32:182:0.578:2	0/1:103,72:33:176:0.411:2
chr1	226352599	rs143911859	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,49:34:107:0.458:2	./.	./.
chr1	226474132	rs10799347	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,18:32:28:0.643:2	0/1:15,7:32:22:0.318:2	0/1:2,4:31:6:0.667:2	0/1:0,27:32:27:1.00:2	0/1:6,8:32:14:0.571:2	0/1:26,17:31:43:0.395:2	./.	0/1:0,17:31:17:1.00:2	0/1:34,9:32:43:0.209:2	0/1:17,16:31:33:0.485:2	0/1:0,42:32:42:1.00:2
chr1	226552821	rs182639036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,25:32:83:0.301:2	./.	./.	./.	./.
chr1	226555302	rs1136410	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,43:31:78:0.551:2	./.	./.	./.	0/1:45,19:33:64:0.297:2	0/1:31,26:30:57:0.456:2	./.
chr1	226561948	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,6:32:128:0.047:2	./.
chr1	226561949	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:33:130:0.046:2	./.
chr1	226562006	rs145186011	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:31:148:0.041:2	./.
chr1	226570840	rs1805415	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:32:45:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,24:32:24:1.00:2	0/1:14,13:32:27:0.481:2	0/1:1,17:30:18:0.944:2	0/1:0,29:31:29:1.00:2	0/1:0,17:30:17:1.00:2	0/1:17,9:36:26:0.346:2	0/1:13,9:32:22:0.409:2	0/1:0,33:31:33:1.00:2
chr1	226573364	rs1805414	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,24:31:49:0.490:2	0/1:21,10:28:31:0.323:2	./.	./.	0/1:0,57:30:57:1.00:2	./.	0/1:44,31:31:75:0.413:2	0/1:51,33:30:84:0.393:2	0/1:45,33:32:78:0.423:2	0/1:16,14:30:30:0.467:2	0/1:31,18:31:49:0.367:2
chr1	226589833	rs1805407	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,21:32:57:0.368:2	0/1:11,15:33:26:0.577:2	./.	./.	0/1:36,29:31:65:0.446:2	./.	0/1:51,32:32:84:0.386:2	0/1:52,29:31:81:0.358:2	./.	./.	0/1:49,32:31:81:0.395:2
chr1	226589958	rs1805404	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:31:43:0.372:2	./.	./.	./.	0/1:24,21:32:45:0.467:2	0/1:15,17:31:32:0.531:2	./.
chr1	226822470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr1	226836459	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,9:30:99:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr1	226923264	rs708775	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,147:32:149:0.987:2	0/1:96,75:33:171:0.439:2	0/1:75,55:33:130:0.423:2	./.
chr1	226923505	rs708776	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,19:31:19:1.00:2	0/1:2,3:32:5:0.600:2	0/1:0,53:32:53:1.00:2	0/1:0,45:31:45:1.00:2	0/1:1,46:32:47:0.979:2	0/1:0,68:32:68:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,50:32:50:1.00:2
chr1	226923938	rs6667260	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2	0/1:23,15:34:38:0.395:2	0/1:35,20:33:55:0.364:2	0/1:0,38:31:38:1.00:2	0/1:30,28:33:58:0.483:2	0/1:24,15:30:39:0.385:2	0/1:6,13:33:19:0.684:2
chr1	226924642	rs3754415	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,17:30:21:0.810:2	0/1:11,8:26:19:0.421:2	0/1:4,9:27:13:0.692:2	./.	./.	./.	0/1:4,5:25:9:0.556:2
chr1	226924651	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	./.	./.
chr1	227069677	rs11405	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,76:28:76:1.00:2	0/1:0,33:28:33:1.00:2	./.	./.	0/1:61,43:26:104:0.413:2	0/1:0,73:27:73:1.00:2	0/1:54,37:26:91:0.407:2	0/1:0,112:27:112:1.00:2	0/1:49,42:27:91:0.462:2	./.	0/1:50,46:27:96:0.479:2
chr1	227069737	rs6759	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,28:30:50:0.560:2	0/1:17,10:31:27:0.370:2	./.	./.	./.	0/1:26,19:27:45:0.422:2	0/1:35,23:28:58:0.397:2	0/1:40,30:29:70:0.429:2	0/1:23,19:29:42:0.452:2	./.	0/1:29,25:29:54:0.463:2
chr1	227071525	rs1046240	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,33:31:78:0.423:2	0/1:37,23:32:60:0.383:2	0/1:10,12:32:22:0.545:2	./.	./.	0/1:62,57:31:119:0.479:2	0/1:110,65:31:175:0.371:2	0/1:63,92:31:155:0.594:2	0/1:69,62:32:131:0.473:2	./.	0/1:44,45:32:89:0.506:2
chr1	227076671	rs61730652	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,85:30:189:0.450:2	./.	./.	./.
chr1	227083200	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.	./.
chr1	227149149	rs11549709	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,55:31:117:0.470:2	./.	./.	./.	./.	./.
chr1	227149203	rs11549708	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,83:32:180:0.461:2	0/1:99,87:32:186:0.468:2	0/1:113,78:32:191:0.408:2	0/1:86,91:33:177:0.514:2	0/1:74,67:32:141:0.475:2	./.
chr1	227153002	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.	./.	./.
chr1	227153073	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:31:44:0.091:2
chr1	227170718	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,12:31:13:0.923:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	227172290	rs12593	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:57,28:31:85:0.329:2	./.	0/1:51,53:32:104:0.510:2	0/1:76,42:31:118:0.356:2	0/1:67,40:32:107:0.374:2	0/1:43,47:32:91:0.522:2	0/1:34,38:32:72:0.528:2	./.
chr1	227174210	rs3738725	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:33:9:0.333:2	0/1:24,17:31:41:0.415:2	./.	0/1:20,25:31:45:0.556:2	0/1:19,20:31:39:0.513:2	0/1:28,22:30:50:0.440:2	0/1:37,24:32:61:0.393:2	0/1:17,15:31:32:0.469:2	0/1:21,13:30:34:0.382:2
chr1	227182033	rs2802269	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,52:31:52:1.00:2	0/1:26,31:31:57:0.544:2	0/1:1,41:31:42:0.976:2	0/1:16,29:31:46:0.644:2
chr1	227182575	rs1045247	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,17:28:38:0.447:2	0/1:4,14:28:18:0.778:2	0/1:0,5:28:5:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,49:28:49:1.00:2	0/1:34,14:27:48:0.292:2	0/1:0,49:28:49:1.00:2	0/1:33,35:29:68:0.515:2	0/1:0,54:29:54:1.00:2	0/1:0,31:29:31:1.00:2	0/1:1,52:28:53:0.981:2
chr1	227198737	rs116416229	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,37:32:72:0.514:2	./.	./.	./.
chr1	227211040	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.
chr1	227216662	rs1929861	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,10:34:22:0.455:2	0/1:2,3:34:5:0.600:2	0/1:0,2:32:2:1.00:2	0/1:0,27:33:27:1.00:2	./.	0/1:6,8:33:14:0.571:2	0/1:0,11:31:11:1.00:2	./.	0/1:16,16:33:32:0.500:2	0/1:0,16:32:16:1.00:2	0/1:18,12:32:30:0.400:2
chr1	227216775	rs1929860	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,10:31:18:0.556:2	0/1:5,7:33:12:0.583:2	./.	0/1:1,23:31:24:0.958:2	./.	./.	./.	./.	./.	0/1:15,12:32:27:0.444:2	0/1:13,13:33:26:0.500:2
chr1	227221123	rs11582863	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,14:32:22:0.636:2	0/1:104,54:32:158:0.342:2	./.	./.	./.	./.	./.	./.	./.
chr1	227261648	rs35017425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,35:32:81:0.432:2	./.
chr1	227261999	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.	./.	./.	./.
chr1	227327388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.
chr1	227504794	rs11804613	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,55:30:93:0.591:2	0/1:19,33:30:52:0.635:2	./.	0/1:42,53:31:95:0.558:2	./.	./.	0/1:80,55:30:135:0.407:2	./.	./.	0/1:39,32:30:71:0.451:2	0/1:44,38:29:82:0.463:2
chr1	227843003	rs61740826	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,13:30:17:0.765:2	./.	./.	./.	./.	./.
chr1	227843384	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2
chr1	227920103	rs3087908	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:85,73:31:159:0.462:2	0/1:45,55:31:100:0.550:2	./.	./.	0/1:99,96:31:195:0.492:2	./.	0/1:116,75:30:191:0.393:2	0/1:80,110:31:190:0.579:2	0/1:99,95:32:194:0.490:2	./.	./.
chr1	227920186	rs35575794	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,66:30:112:0.589:2	./.
chr1	227920357	rs4837	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:11,8:32:19:0.421:2	./.	0/1:10,13:32:23:0.565:2	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.
chr1	227920665	rs41270159	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,19:34:51:0.373:2	0/1:13,12:33:25:0.480:2	./.	0/1:51,30:33:81:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr1	227921253	rs150323583	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:31:29:0.379:2	0/1:62,67:30:129:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr1	227922918	rs2295994	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:31:2:1.00:2	./.	./.	0/1:6,4:32:10:0.400:2	0/1:0,2:28:2:1.00:2	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.
chr1	227923081	rs7419238	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2
chr1	227935444	rs2236359	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,129:29:131:0.985:2	0/1:1,76:29:77:0.987:2	./.	0/1:108,82:29:191:0.432:2	0/1:2,190:29:192:0.990:2	./.	0/1:0,180:29:181:1.00:2	0/1:104,90:29:195:0.464:2	0/1:98,95:29:193:0.492:2	0/1:92,67:30:159:0.421:2	./.
chr1	227935750	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:30:103:0.476:2	./.	./.	./.	./.
chr1	227954677	rs17851681	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:32:11:0.545:2	0/1:47,60:32:107:0.561:2	./.	0/1:62,43:31:105:0.410:2	./.	./.	./.	0/1:36,40:32:76:0.526:2	./.
chr1	227954689	rs78405690	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:32:12:0.583:2	0/1:56,62:33:118:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr1	227963491	rs754224	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,24:31:47:0.511:2	0/1:14,11:32:25:0.440:2	./.	./.	0/1:23,21:31:44:0.477:2	./.	0/1:25,14:32:39:0.359:2	0/1:43,27:30:70:0.386:2	0/1:33,32:31:65:0.492:2	./.	./.
chr1	228003508	rs41315595	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,11:30:30:0.367:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228003839	rs79840641	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,44:30:85:0.518:2	0/1:25,30:31:55:0.545:2	./.	./.	0/1:31,56:31:87:0.644:2	./.	0/1:26,40:31:66:0.606:2	./.	./.	./.	./.
chr1	228004966	rs61826983	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,54:31:100:0.540:2	./.	./.	./.
chr1	228033197	rs9426581	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,17:30:28:0.607:2	0/1:6,9:32:15:0.600:2	0/1:0,10:30:10:1.00:2	0/1:28,30:31:58:0.517:2	0/1:0,64:31:64:1.00:2	0/1:0,44:31:44:1.00:2	0/1:27,48:31:75:0.640:2	0/1:0,59:31:59:1.00:2	0/1:27,28:31:55:0.509:2	0/1:0,28:32:28:1.00:2	0/1:0,29:32:29:1.00:2
chr1	228033258	rs61741607	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:31:20:0.450:2	0/1:52,44:31:96:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr1	228109471	rs8192633	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:31:15:0.667:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228109663	rs76902368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228113046	rs8192629	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	0/1:7,14:31:21:0.667:2	./.	./.	./.	0/1:12,6:28:19:0.333:2
chr1	228113163	rs3795768	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:26:6:1.00:2	./.	./.	0/1:4,5:28:9:0.556:2	./.	./.	./.
chr1	228194892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.	./.
chr1	228290892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:114:0.035:2	./.	./.	./.	./.	./.
chr1	228335125	rs1803695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:33:71:0.549:2
chr1	228335959	rs11580599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:29:24:0.500:2
chr1	228346197	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2
chr1	228346874	rs1052534	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,89:30:89:1.00:2	./.	./.	./.	./.	./.
chr1	228347352	rs6668719	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,79:33:80:0.988:2	0/1:0,53:32:53:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,65:34:65:1.00:2	0/1:0,79:33:79:1.00:2	0/1:32,30:33:62:0.484:2
chr1	228352160	rs4348717	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:29:108:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,132:30:132:1.00:2	0/1:1,158:30:159:0.994:2	0/1:0,180:30:180:1.00:2	0/1:0,170:29:170:1.00:2	0/1:0,179:29:179:1.00:2	0/1:1,161:30:162:0.994:2	0/1:0,114:30:114:1.00:2	0/1:1,144:29:145:0.993:2
chr1	228362682	rs2298014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.
chr1	228391808	rs11800309	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,27:31:47:0.574:2	0/1:26,14:32:40:0.350:2	./.	0/1:1,39:32:40:0.975:2	0/1:30,25:31:55:0.455:2	./.	./.	./.	./.	./.	0/1:46,26:31:72:0.361:2
chr1	228399766	rs55971985	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:28:9:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,7:29:7:1.00:2	0/1:4,4:28:8:0.500:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,6:30:6:1.00:2	./.	0/1:0,9:26:9:1.00:2	0/1:2,4:29:6:0.667:2
chr1	228402047	rs1620111	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:54:1.00:2	0/1:0,44:32:44:1.00:2	0/1:14,10:32:24:0.417:2	0/1:0,86:32:86:1.00:2	0/1:66,56:30:122:0.459:2	0/1:0,87:31:87:1.00:2	0/1:52,34:32:86:0.395:2	0/1:4,66:30:70:0.943:2	0/1:0,74:33:74:1.00:2	0/1:0,58:31:58:1.00:2	0/1:32,21:32:53:0.396:2
chr1	228402121	rs1771487	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,76:29:76:1.00:2	0/1:10,14:27:24:0.583:2	0/1:1,140:28:144:0.993:2	0/1:77,61:26:140:0.442:2	0/1:2,131:27:134:0.985:2	0/1:103,55:27:158:0.348:2	0/1:2,144:26:147:0.986:2	0/1:0,150:29:152:1.00:2	0/1:0,129:28:130:1.00:2	0/1:54,42:29:96:0.438:2
chr1	228402508	rs2776853	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	0/1:12,18:32:30:0.600:2	./.	0/1:13,20:32:33:0.606:2	./.	./.	./.	0/1:24,14:33:38:0.368:2
chr1	228403435	rs201897286	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	0/1:8,14:31:22:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228404198	rs61501937	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:31:21:0.650:2
chr1	228404230	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr1	228404818	rs200638282	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,43:33:91:0.473:2	./.	./.
chr1	228412227	rs1771480	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,14:32:18:0.778:2	./.	0/1:82,51:30:133:0.383:2	./.	0/1:77,47:31:124:0.379:2	./.	./.	./.	0/1:45,49:31:94:0.521:2
chr1	228412228	rs1757153	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,14:31:18:0.778:2	./.	0/1:81,51:29:132:0.386:2	./.	0/1:77,47:30:124:0.379:2	./.	./.	./.	0/1:45,49:30:94:0.521:2
chr1	228412308	rs1757152	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:31:15:0.733:2	./.	0/1:72,43:31:115:0.374:2	./.	0/1:51,46:31:97:0.474:2	./.	./.	./.	0/1:57,51:31:108:0.472:2
chr1	228430947	.	C	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,9:30:43:0.209:2	./.	./.	0/1:46,10:30:56:0.179:2	0/1:33,11:28:45:0.250:2	0/1:35,17:30:52:0.327:2	0/1:29,13:28:42:0.310:2	0/1:41,15:28:56:0.268:2	0/1:47,10:27:57:0.175:2	0/1:36,10:29:46:0.217:2	0/1:27,4:25:32:0.129:2
chr1	228431095	rs1771455	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,51:30:120:0.425:2	0/1:32,25:30:57:0.439:2	0/1:11,7:33:18:0.389:2	0/1:0,146:31:146:1.00:2	0/1:1,108:31:109:0.991:2	./.	0/1:67,54:31:121:0.446:2	./.	./.	./.	0/1:0,89:30:89:1.00:2
chr1	228432264	rs41305731	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.	./.	./.	./.
chr1	228433217	rs2487384	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,62:30:132:0.470:2	0/1:29,39:29:68:0.574:2	0/1:5,13:31:18:0.722:2	0/1:3,154:29:157:0.981:2	0/1:2,169:30:171:0.988:2	./.	0/1:88,75:30:163:0.460:2	./.	./.	./.	0/1:1,110:29:111:0.991:2
chr1	228434292	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:67,4:30:71:0.056:2	./.	./.	0/1:95,5:30:100:0.050:2	0/1:104,8:28:112:0.071:2	0/1:95,8:32:103:0.078:2	./.	0/1:100,10:28:110:0.091:2	0/1:102,5:33:107:0.047:2	0/1:96,5:28:101:0.050:2	0/1:88,5:32:93:0.054:2
chr1	228434395	rs7517088	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,41:29:97:0.423:2	0/1:23,29:29:52:0.558:2	0/1:13,4:29:17:0.235:2	0/1:1,81:28:82:0.988:2	0/1:1,82:28:83:0.988:2	./.	0/1:68,31:29:99:0.313:2	./.	./.	./.	0/1:0,60:28:60:1.00:2
chr1	228434467	rs7517108	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,23:29:63:0.365:2	0/1:19,15:28:34:0.441:2	0/1:13,5:30:18:0.278:2	0/1:1,56:30:57:0.982:2	0/1:0,41:29:41:1.00:2	./.	0/1:41,24:31:65:0.369:2	./.	./.	./.	0/1:0,25:30:25:1.00:2
chr1	228437820	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,5:32:187:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	228444565	rs7532342	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,52:29:53:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,19:30:19:1.00:2
chr1	228451818	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.
chr1	228451826	rs453140	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,67:30:136:0.496:2	0/1:36,33:31:69:0.478:2	./.	0/1:2,151:30:155:0.987:2	0/1:77,64:30:141:0.454:2	./.	./.	./.	./.	./.	0/1:27,46:30:73:0.630:2
chr1	228464248	rs1188721	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,16:32:48:0.333:2	0/1:21,7:33:28:0.250:2	0/1:10,4:32:14:0.286:2	0/1:0,26:32:26:1.00:2	0/1:1,24:32:25:0.960:2	./.	./.	./.	./.	./.	0/1:0,21:32:21:1.00:2
chr1	228464276	rs1188722	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,22:33:65:0.338:2	0/1:24,10:31:34:0.294:2	0/1:11,6:31:17:0.353:2	0/1:0,37:32:37:1.00:2	0/1:1,24:33:25:0.960:2	./.	./.	./.	./.	./.	0/1:0,22:33:22:1.00:2
chr1	228468458	rs1188697	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,5:32:11:0.455:2	0/1:4,5:32:9:0.556:2	./.	0/1:0,33:30:33:1.00:2	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2
chr1	228469801	rs150312546	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,47:29:111:0.423:2	./.	./.	./.	./.	./.	./.
chr1	228471379	rs56168609	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:33:20:0.600:2	./.	0/1:59,54:32:113:0.478:2	./.	0/1:38,49:32:88:0.563:2	./.	./.	./.	0/1:37,33:31:70:0.471:2
chr1	228475597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2
chr1	228475848	rs437129	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,26:32:60:0.433:2	0/1:19,19:30:38:0.500:2	./.	0/1:1,83:30:84:0.988:2	0/1:23,22:31:45:0.489:2	./.	./.	./.	./.	./.	0/1:34,52:31:86:0.605:2
chr1	228480282	rs1150908	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,49:29:124:0.395:2	0/1:31,39:29:70:0.557:2	0/1:3,13:30:16:0.813:2	0/1:3,146:29:149:0.980:2	0/1:0,118:29:118:1.00:2	./.	0/1:72,71:28:143:0.497:2	0/1:143,6:28:149:0.040:2	./.	./.	0/1:2,140:28:142:0.986:2
chr1	228481148	rs377619088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,64:32:118:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr1	228482010	rs449133	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,81:30:165:0.494:2	0/1:43,67:31:110:0.609:2	0/1:14,22:31:36:0.611:2	0/1:0,179:30:179:1.00:2	0/1:82,101:30:183:0.552:2	./.	0/1:82,100:30:182:0.549:2	./.	./.	./.	0/1:71,79:31:150:0.527:2
chr1	228482028	rs4653547	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,72:31:181:0.398:2	./.	./.	./.	./.	./.	0/1:87,70:31:157:0.446:2
chr1	228482569	rs56122236	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,97:32:191:0.508:2	0/1:91,86:32:177:0.486:2	0/1:80,73:32:153:0.477:2	./.
chr1	228494696	rs4653939	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,107:31:193:0.554:2	./.	./.	./.	./.	./.	0/1:69,89:31:158:0.563:2
chr1	228494790	rs435776	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,74:32:153:0.484:2	0/1:65,71:32:136:0.522:2	0/1:23,22:32:45:0.489:2	0/1:2,179:32:181:0.989:2	0/1:111,84:31:195:0.431:2	./.	0/1:95,93:32:188:0.495:2	./.	./.	./.	0/1:92,72:32:164:0.439:2
chr1	228496014	rs876180	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,87:30:133:0.654:2	./.	./.	./.	./.	./.	0/1:33,34:30:68:0.507:2
chr1	228503677	rs1150912	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,42:25:83:0.506:2	0/1:21,17:26:38:0.447:2	./.	0/1:1,121:26:122:0.992:2	0/1:0,104:25:104:1.00:2	./.	0/1:60,38:26:98:0.388:2	./.	./.	./.	0/1:1,48:26:49:0.980:2
chr1	228504472	rs1188732	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,9:29:16:0.563:2	./.	./.	0/1:0,24:29:24:1.00:2	0/1:0,27:30:27:1.00:2	./.	0/1:14,4:30:18:0.222:2	./.	./.	./.	0/1:0,10:28:10:1.00:2
chr1	228504591	rs61825301	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.
chr1	228504670	rs11810627	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	228505204	rs4653942	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,93:30:180:0.520:2	./.	./.	./.	./.	./.	0/1:31,49:30:80:0.613:2
chr1	228505668	rs1188729	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,40:33:92:0.435:2	0/1:32,38:32:70:0.543:2	0/1:5,7:32:12:0.583:2	0/1:2,111:33:113:0.982:2	0/1:1,169:32:170:0.994:2	./.	0/1:126,66:32:192:0.344:2	./.	./.	./.	0/1:0,111:32:111:1.00:2
chr1	228505699	rs1188728	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,61:29:117:0.530:2	0/1:32,51:29:83:0.614:2	0/1:7,7:30:14:0.500:2	0/1:2,145:29:147:0.986:2	0/1:1,176:30:177:0.994:2	./.	0/1:127,60:30:187:0.321:2	./.	./.	./.	0/1:1,122:29:124:0.992:2
chr1	228505739	rs3795801	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,76:32:159:0.478:2	./.	./.	./.	./.	./.	0/1:57,68:31:125:0.544:2
chr1	228509427	rs373610	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,27:32:75:0.360:2	0/1:30,20:32:50:0.400:2	0/1:6,9:34:15:0.600:2	0/1:0,114:33:114:1.00:2	0/1:2,170:32:172:0.988:2	./.	0/1:101,80:32:181:0.442:2	./.	./.	./.	0/1:0,71:31:72:1.00:2
chr1	228520973	rs369909	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,20:30:42:0.476:2	0/1:12,22:29:34:0.647:2	0/1:9,9:31:18:0.500:2	0/1:2,65:30:67:0.970:2	0/1:43,54:29:97:0.557:2	./.	0/1:21,32:29:53:0.604:2	./.	./.	./.	0/1:18,18:32:36:0.500:2
chr1	228524961	rs3795808	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,44:31:92:0.478:2	0/1:39,38:31:77:0.494:2	./.	0/1:2,138:31:140:0.986:2	0/1:62,83:31:145:0.572:2	./.	0/1:84,75:31:160:0.472:2	./.	./.	./.	0/1:46,59:32:105:0.562:2
chr1	228525008	rs3795809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,78:30:187:0.417:2	./.	./.	./.	./.	./.	./.
chr1	228526011	rs11577699	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:32:16:0.438:2
chr1	228526665	rs505629	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,47:28:108:0.435:2	0/1:33,24:28:57:0.421:2	0/1:14,10:28:24:0.417:2	0/1:1,133:28:134:0.993:2	0/1:71,35:27:106:0.330:2	./.	0/1:60,32:28:92:0.348:2	./.	./.	./.	0/1:59,42:28:102:0.416:2
chr1	228527769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,8:28:113:0.071:2	./.
chr1	228528563	rs1188710	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,13:32:37:0.351:2	0/1:9,7:32:16:0.438:2	0/1:2,4:33:6:0.667:2	0/1:0,36:31:36:1.00:2	0/1:15,10:32:25:0.400:2	./.	0/1:10,16:31:26:0.615:2	./.	./.	./.	0/1:8,11:32:19:0.579:2
chr1	228547901	rs12035900	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:16,27:31:43:0.628:2	0/1:12,19:30:31:0.613:2	0/1:2,3:30:5:0.600:2	./.	./.	0/1:0,76:29:77:1.00:2	0/1:44,42:29:86:0.488:2	0/1:1,82:29:83:0.988:2	0/1:0,53:28:54:1.00:2	0/1:0,53:31:53:1.00:2	./.
chr1	228550333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	228550417	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:34:54:0.074:2	./.	./.
chr1	228550429	rs11585049	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:33:40:0.550:2
chr1	228556487	rs188676098	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,50:31:121:0.413:2	./.	./.	./.	./.
chr1	228559994	rs500049	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:30:17:0.353:2	./.	0/1:44,56:30:100:0.560:2	0/1:2,126:29:130:0.984:2	0/1:40,60:31:101:0.600:2	0/1:1,115:30:116:0.991:2	0/1:0,109:31:109:1.00:2	0/1:0,74:30:75:1.00:2	./.
chr1	228560139	rs498382	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,35:30:73:0.479:2	0/1:21,25:31:46:0.543:2	0/1:0,4:29:4:1.00:2	0/1:40,35:31:75:0.467:2	0/1:0,78:29:78:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,57:31:57:1.00:2	0/1:15,11:31:26:0.423:2
chr1	228560423	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:31:95:0.484:2	./.
chr1	228560687	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,5:21:35:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228560700	rs512253	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,12:29:42:0.286:2	0/1:21,13:28:34:0.382:2	./.	./.	0/1:0,67:27:67:1.00:2	0/1:0,42:29:42:1.00:2	0/1:47,32:27:79:0.405:2	0/1:0,46:28:47:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,25:28:25:1.00:2	./.
chr1	228582461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.
chr1	228596809	rs369736985	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr1	228601496	rs201069806	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,12:13:87:0.140:2	./.	./.	./.	./.	./.
chr1	228612838	rs2230656	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,71:30:71:1.00:2	0/1:3,75:29:78:0.962:2	0/1:1,73:30:74:0.986:2	0/1:1,53:30:54:0.981:2	0/1:0,54:29:54:1.00:2
chr1	228612892	rs56336130	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:27:14:0.500:2	./.	0/1:11,14:27:25:0.560:2	./.	./.
chr1	228646386	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,5:29:96:0.052:2	./.	./.	./.	./.	./.	0/1:56,6:29:62:0.097:2	./.
chr1	228646557	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:19:20:0.250:2
chr1	228646804	rs115825350	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.
chr1	228680806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	228699477	rs6665115	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,170:30:170:1.00:2	0/1:4,154:29:158:0.975:2	0/1:2,43:30:45:0.956:2	0/1:104,80:30:185:0.435:2	0/1:1,179:30:180:0.994:2	0/1:2,186:30:188:0.989:2	./.	./.	0/1:110,82:30:192:0.427:2	0/1:1,159:30:160:0.994:2	0/1:0,180:29:180:1.00:2
chr1	228871693	rs3738073	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	0/1:0,18:29:18:1.00:2	./.	./.	0/1:6,5:29:11:0.455:2	./.	./.
chr1	229385582	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:33:31:0.452:2	./.
chr1	229386237	rs16849638	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,11:32:12:0.917:2	./.	0/1:46,34:32:80:0.425:2	./.	0/1:43,52:31:95:0.547:2	./.	./.	0/1:67,46:32:113:0.407:2	./.
chr1	229461024	rs2282083	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,67:32:113:0.593:2	0/1:34,47:31:81:0.580:2	0/1:3,6:31:9:0.667:2	./.	0/1:46,50:31:96:0.521:2	0/1:53,61:30:114:0.535:2	./.	./.	0/1:0,111:32:111:1.00:2	0/1:61,42:32:103:0.408:2	0/1:76,63:32:139:0.453:2
chr1	229599414	rs35944758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229600512	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,4:31:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	229613370	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.
chr1	229622162	rs1065675	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229623218	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.	./.	./.
chr1	229623338	rs1065674	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229635521	rs10916495	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229637807	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:30:28:0.357:2	0/1:11,14:31:25:0.560:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229653929	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.	0/1:162,4:33:166:0.024:2	./.
chr1	229653947	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:177,6:30:183:0.033:2	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	0/1:94,4:32:98:0.041:2	0/1:149,4:32:153:0.026:2	./.	0/1:170,4:33:174:0.023:2	./.
chr1	229654053	rs115488729	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,83:33:193:0.430:2	0/1:104,77:32:181:0.425:2	./.
chr1	229661724	rs373067837	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.	./.
chr1	229661744	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.	./.	./.
chr1	229661748	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:30:80:0.050:2	./.	./.	./.	./.
chr1	229662979	rs147525990	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.
chr1	229662994	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.	./.
chr1	229663048	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.
chr1	229683264	rs3738187	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	./.
chr1	229730452	rs2295625	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	0/1:41,45:31:86:0.523:2	0/1:49,47:31:96:0.490:2	0/1:45,47:32:92:0.511:2	0/1:57,65:31:122:0.533:2	./.	0/1:40,49:32:90:0.551:2	0/1:55,45:30:100:0.450:2
chr1	229738170	rs3753886	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:31:17:0.588:2	0/1:86,53:30:139:0.381:2	0/1:80,71:30:151:0.470:2	0/1:82,87:31:169:0.515:2	0/1:64,64:30:128:0.500:2	./.	./.	0/1:64,55:30:119:0.462:2	0/1:76,62:31:138:0.449:2
chr1	229738236	rs4925500	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:32:15:1.00:2	0/1:0,78:31:78:1.00:2	0/1:1,57:31:58:0.983:2	0/1:46,36:31:82:0.439:2	0/1:29,26:31:55:0.473:2	0/1:40,37:31:77:0.481:2	0/1:41,42:33:83:0.506:2	0/1:46,24:31:70:0.343:2	0/1:0,92:32:92:1.00:2
chr1	229750036	rs7547607	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:66,42:31:108:0.389:2	0/1:58,34:31:92:0.370:2	./.	./.	0/1:55,45:31:100:0.450:2	0/1:37,38:32:75:0.507:2	./.	0/1:42,38:31:80:0.475:2
chr1	229770917	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229772693	rs3811473	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,12:33:15:0.800:2	0/1:44,68:33:112:0.607:2	0/1:31,38:31:69:0.551:2	0/1:65,36:32:102:0.356:2	0/1:34,41:32:75:0.547:2	./.	./.	0/1:41,38:32:79:0.481:2	0/1:77,61:32:138:0.442:2
chr1	229772932	rs3811474	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,39:33:74:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr1	229773441	rs3811475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,17:31:49:0.347:2	./.	./.	./.	./.	./.	./.	./.
chr1	229790047	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.
chr1	229790048	rs7521953	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,10:32:29:0.345:2	0/1:123,70:33:193:0.363:2	0/1:84,111:32:195:0.569:2	0/1:1,192:32:193:0.995:2	0/1:0,191:32:191:1.00:2	./.	0/1:94,98:33:192:0.510:2	0/1:2,186:32:188:0.989:2	0/1:114,73:31:187:0.390:2
chr1	230371783	rs184677007	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:30:54:0.074:2
chr1	230379092	rs142046356	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:30:47:0.489:2	./.	./.	./.
chr1	230384970	rs1923950	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:30:101:0.436:2	./.	0/1:66,57:30:123:0.463:2
chr1	230415148	rs2273970	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,44:30:104:0.423:2	./.	./.
chr1	230461079	rs2306813	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,29:31:69:0.426:2	0/1:26,4:28:30:0.133:2	./.	0/1:66,36:31:102:0.353:2	./.	./.	0/1:80,62:31:142:0.437:2	./.	0/1:69,47:31:116:0.405:2	./.	0/1:42,35:30:77:0.455:2
chr1	230492931	rs114204934	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:32:78:0.462:2	0/1:27,15:31:42:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	230498061	rs2009265	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,43:31:43:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	230498094	rs74143198	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:32:33:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	230503720	rs74143202	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,41:29:76:0.539:2	./.	./.	./.	./.	./.	./.	./.
chr1	230513323	rs143223857	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:33:31:0.419:2	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	230814668	rs11558606	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:30:15:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr1	230820960	rs372577276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chr1	230825825	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.
chr1	230829139	rs1051038	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,50:32:94:0.538:2	0/1:38,20:31:58:0.345:2	./.	./.	0/1:41,42:31:83:0.506:2	0/1:2,102:32:104:0.981:2	./.	./.	./.	./.	./.
chr1	230841687	rs7080	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,120:32:120:1.00:2	0/1:1,116:32:117:0.991:2	0/1:0,119:32:119:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,125:32:125:1.00:2
chr1	230845794	rs699	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,27:27:54:0.500:2	0/1:16,19:29:35:0.543:2	./.	0/1:0,63:27:63:1.00:2	0/1:1,78:27:79:0.987:2	0/1:0,62:28:62:1.00:2	./.	0/1:68,67:28:135:0.496:2	0/1:49,33:28:83:0.402:2	0/1:44,25:27:69:0.362:2	0/1:34,36:28:70:0.514:2
chr1	230845977	rs4762	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,18:31:30:0.600:2	0/1:8,15:31:23:0.652:2	./.	0/1:14,15:31:29:0.517:2	./.	0/1:10,16:30:26:0.615:2	./.	./.	./.	./.	./.
chr1	230846391	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,67:32:136:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr1	230895340	rs28359608	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	0/1:9,8:31:17:0.471:2	0/1:20,14:31:34:0.412:2	./.	0/1:30,22:30:52:0.423:2	./.	./.	0/1:29,18:31:47:0.383:2
chr1	230895360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:30:40:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr1	230898494	rs2282319	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,28:32:67:0.418:2	0/1:19,18:32:37:0.486:2	./.	0/1:41,33:30:75:0.446:2	./.	0/1:57,38:31:95:0.400:2	./.	0/1:73,56:32:129:0.434:2	0/1:42,30:33:72:0.417:2	./.	./.
chr1	230903350	rs3828126	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,8:29:26:0.308:2	0/1:8,7:30:15:0.467:2	./.	0/1:15,18:30:33:0.545:2	./.	0/1:15,12:30:27:0.444:2	./.	0/1:20,3:31:23:0.130:2	./.	./.	./.
chr1	230910339	rs7517389	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,69:31:165:0.418:2
chr1	230914729	rs1933631	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:48,27:32:75:0.360:2	0/1:43,44:32:87:0.506:2	0/1:43,56:32:99:0.566:2	0/1:48,38:32:86:0.442:2	0/1:47,58:33:105:0.552:2	./.	./.	0/1:31,17:33:48:0.354:2
chr1	230914880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.
chr1	230916001	rs200488224	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,4:35:172:0.023:2	./.	./.	./.	./.	./.	./.
chr1	230916260	rs28359687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.
chr1	230923313	rs12731961	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,56:30:114:0.491:2	./.	./.	./.	./.
chr1	230925954	rs28359706	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,22:33:49:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr1	230933898	rs2297831	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,23:32:70:0.329:2	0/1:24,13:32:37:0.351:2	./.	./.	./.	0/1:26,17:30:43:0.395:2	./.	./.	./.	./.	./.
chr1	230979207	rs34864456	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,45:31:118:0.381:2	./.	./.	./.	./.	./.	./.	./.
chr1	230979247	rs35238992	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,54:32:120:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr1	230979448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,6:29:136:0.044:2	./.	./.	./.	./.	./.
chr1	231042732	rs3811502	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,104:31:106:0.981:2	./.	0/1:96,72:31:169:0.429:2	0/1:70,39:32:109:0.358:2	0/1:76,69:31:145:0.476:2	0/1:67,95:32:162:0.586:2	0/1:66,65:31:131:0.496:2	./.
chr1	231057247	rs2275333	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	0/1:14,14:31:28:0.500:2	./.	0/1:10,6:32:16:0.375:2	./.	./.	0/1:27,19:32:46:0.413:2
chr1	231067513	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.
chr1	231175678	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	231376806	rs2274067	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,32:34:94:0.340:2	./.	./.
chr1	231401902	rs574553	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:33:32:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,3:33:3:1.00:2	0/1:19,27:30:46:0.587:2	0/1:0,30:31:30:1.00:2	./.	0/1:0,26:31:26:1.00:2	./.	0/1:0,42:32:42:1.00:2	0/1:7,31:32:38:0.816:2	0/1:32,28:33:60:0.467:2
chr1	231406515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.
chr1	231408091	rs11558492	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,82:32:165:0.497:2	0/1:49,43:32:92:0.467:2	0/1:10,5:32:15:0.333:2	0/1:87,60:32:147:0.408:2	0/1:61,60:32:121:0.496:2	./.	0/1:1,118:32:119:0.992:2	./.	./.	0/1:78,62:32:140:0.443:2	0/1:81,100:32:181:0.552:2
chr1	231411911	rs200992309	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,18:15:96:0.189:2	./.	./.	./.	0/1:68,10:14:78:0.128:2	0/1:108,14:20:122:0.115:2
chr1	231488524	rs2437150	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,18:33:34:0.529:2	0/1:5,9:33:14:0.643:2	0/1:0,3:31:3:1.00:2	0/1:9,5:33:14:0.357:2	0/1:0,21:31:21:1.00:2	0/1:9,8:30:17:0.471:2	0/1:15,5:31:20:0.250:2	0/1:0,25:31:25:1.00:2	0/1:15,23:32:38:0.605:2	0/1:0,23:32:23:1.00:2	./.
chr1	231557164	rs61750991	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.
chr1	231664607	rs41303127	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,24:32:57:0.421:2	0/1:22,20:32:42:0.476:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	0/1:37,41:34:78:0.526:2	./.	0/1:41,43:33:84:0.512:2
chr1	231830295	rs3738401	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,23:31:42:0.548:2	0/1:15,15:32:30:0.500:2	./.	0/1:0,41:31:41:1.00:2	0/1:25,18:31:43:0.419:2	0/1:31,35:32:66:0.530:2	0/1:2,47:32:49:0.959:2	./.	./.	./.	0/1:15,21:31:36:0.583:2
chr1	231903010	rs3738402	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	231906589	rs2492367	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:33:110:0.382:2	./.
chr1	231931048	rs2273890	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:15,9:30:24:0.375:2	./.	./.	./.
chr1	231954101	rs6675281	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:32:70:0.420:2	0/1:24,28:33:52:0.538:2	./.	./.	./.	./.
chr1	231954145	rs12133766	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:28:51:0.412:2	0/1:24,31:29:55:0.564:2	./.	0/1:20,20:31:40:0.500:2	./.
chr1	232002330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.
chr1	232002332	rs3081	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:30:37:0.459:2	./.	0/1:19,15:30:34:0.441:2	./.
chr1	232098847	rs12754734	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:86,88:32:174:0.506:2	0/1:64,62:33:126:0.492:2	0/1:19,12:33:31:0.387:2	./.	./.	0/1:5,181:32:186:0.973:2	./.	./.	./.	0/1:99,87:32:186:0.468:2	0/1:96,94:33:190:0.495:2
chr1	232098859	rs4266866	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:87,85:33:173:0.494:2	0/1:61,56:32:117:0.479:2	0/1:20,13:32:33:0.394:2	./.	./.	0/1:2,190:32:192:0.990:2	./.	./.	./.	0/1:106,85:32:191:0.445:2	0/1:97,90:33:187:0.481:2
chr1	232099103	rs142896434	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:29:18:0.389:2	./.	./.
chr1	232099726	rs821594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.
chr1	232099733	rs821595	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.
chr1	232144598	rs821616	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:32:34:0.441:2	0/1:18,12:32:30:0.400:2	./.	./.	./.	0/1:0,65:31:65:1.00:2	./.	./.	./.	0/1:24,23:32:48:0.489:2	0/1:43,20:31:63:0.317:2
chr1	232144739	rs115112816	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,23:33:66:0.348:2	./.	./.
chr1	232144887	rs821617	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.	./.	./.	./.	0/1:8,4:33:12:0.333:2
chr1	232534957	rs12043251	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,36:33:70:0.514:2	0/1:31,16:31:47:0.340:2	./.	0/1:57,44:33:101:0.436:2	0/1:2,81:31:83:0.976:2	./.	./.	./.	./.	0/1:26,32:32:58:0.552:2	./.
chr1	232564288	rs61729754	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,79:32:186:0.425:2	./.
chr1	232564297	rs3210731	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:110,83:31:193:0.430:2	0/1:56,32:32:88:0.364:2	0/1:11,11:31:22:0.500:2	./.	./.	./.	0/1:110,60:32:170:0.353:2	0/1:106,83:31:189:0.439:2	0/1:123,75:32:198:0.379:2	./.	0/1:123,72:32:195:0.369:2
chr1	232574921	rs2275307	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,33:31:106:0.311:2	./.	0/1:44,38:30:82:0.463:2	0/1:51,34:30:85:0.400:2	0/1:43,19:30:62:0.306:2	./.	0/1:32,17:29:49:0.347:2
chr1	232581436	rs12757779	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	0/1:21,13:29:34:0.382:2	./.	0/1:21,9:30:30:0.300:2	0/1:22,19:31:41:0.463:2	0/1:25,21:30:47:0.457:2	./.	0/1:24,11:30:35:0.314:2
chr1	232596653	rs1766574	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	232596728	rs74807360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,43:31:84:0.512:2	0/1:26,32:32:58:0.552:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2
chr1	232597987	rs12142629	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	0/1:27,36:31:63:0.571:2	./.	0/1:36,28:31:64:0.438:2	0/1:38,50:30:88:0.568:2	0/1:51,54:32:105:0.514:2	./.	0/1:39,27:32:66:0.409:2
chr1	232650750	rs3795366	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:30:106:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,147:29:147:1.00:2	0/1:0,187:29:188:1.00:2	0/1:0,167:28:167:1.00:2	0/1:4,188:29:193:0.979:2	0/1:1,180:29:181:0.994:2	0/1:0,167:30:167:1.00:2	0/1:0,126:29:126:1.00:2	0/1:0,108:29:108:1.00:2
chr1	232650867	rs4649383	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,51:31:98:0.520:2	0/1:23,21:31:44:0.477:2	0/1:0,16:30:16:1.00:2	0/1:83,54:30:137:0.394:2	0/1:2,130:30:132:0.985:2	0/1:61,58:30:119:0.487:2	0/1:3,111:31:114:0.974:2	0/1:0,120:31:120:1.00:2	0/1:67,65:31:132:0.492:2	0/1:0,112:31:112:1.00:2	0/1:0,120:31:120:1.00:2
chr1	232651026	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,6:32:93:0.065:2
chr1	232940953	rs10797593	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,63:32:126:0.500:2	./.	./.
chr1	232941153	rs12409898	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,30:31:30:1.00:2	0/1:5,7:31:12:0.583:2	0/1:0,94:30:94:1.00:2	0/1:35,42:29:77:0.545:2	0/1:2,79:30:81:0.975:2	./.	0/1:1,95:30:96:0.990:2	0/1:37,26:31:63:0.413:2	0/1:1,57:30:58:0.983:2	0/1:0,79:30:80:1.00:2
chr1	232941162	rs377032191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,20:32:52:0.385:2	./.	./.
chr1	232941215	rs41271527	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:32:29:0.586:2	./.	./.
chr1	232941354	rs12567597	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:28:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	232941390	rs2814526	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:2,3:28:5:0.600:2	./.	./.	./.	./.
chr1	232941677	rs3766497	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:33:97:0.454:2	./.	./.
chr1	232942251	rs12048236	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:33:35:0.400:2	./.	./.
chr1	232943185	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,37:32:80:0.463:2	./.	./.	./.	./.	./.
chr1	232944569	rs1845789	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,44:31:45:0.978:2	0/1:0,23:32:23:1.00:2	0/1:1,5:31:6:0.833:2	0/1:0,50:32:50:1.00:2	./.	0/1:0,59:31:59:1.00:2	0/1:29,25:32:54:0.463:2	0/1:0,55:31:55:1.00:2	0/1:29,32:33:61:0.525:2	0/1:1,36:31:37:0.973:2	0/1:0,85:32:85:1.00:2
chr1	232944926	rs2795462	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,35:31:35:1.00:2	./.	0/1:20,23:32:43:0.535:2	./.	./.	./.	./.
chr1	232944967	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr1	232945039	rs16858236	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.
chr1	232945255	rs10489578	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,68:31:113:0.602:2	./.	./.
chr1	233086456	rs13381	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,11:33:33:0.333:2	./.	0/1:43,27:33:70:0.386:2	./.	./.	./.	0/1:15,24:33:39:0.615:2	./.
chr1	233091463	rs12725558	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	0/1:16,13:30:29:0.448:2	./.	./.	./.
chr1	233121791	rs12038915	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,26:31:52:0.500:2	0/1:15,23:31:38:0.605:2	0/1:5,8:31:13:0.615:2	0/1:41,39:31:80:0.488:2	./.	0/1:35,38:31:73:0.521:2	./.	./.	./.	0/1:39,27:32:66:0.409:2	./.
chr1	233121884	rs41304133	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,85:31:191:0.445:2	./.	./.	./.	./.
chr1	233122113	rs189263803	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:27:21:0.714:2	./.	./.	./.	./.	./.	./.	./.
chr1	233122127	rs41309639	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,10:31:21:0.476:2	0/1:5,8:31:13:0.615:2	0/1:3,3:31:6:0.500:2	0/1:10,19:31:29:0.655:2	./.	0/1:13,28:31:41:0.683:2	./.	./.	./.	0/1:11,19:32:30:0.633:2	./.
chr1	233134086	rs56231757	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,47:30:81:0.580:2	./.	0/1:4,93:30:97:0.959:2	0/1:27,27:31:54:0.500:2	0/1:22,35:30:57:0.614:2	./.
chr1	233225848	rs12059884	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,138:30:138:1.00:2	./.	./.
chr1	233225885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.	./.
chr1	233388242	rs6682865	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	0/1:28,22:32:50:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233393994	rs147287858	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,64:29:118:0.542:2	0/1:45,37:29:82:0.451:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233397001	rs45467006	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:30:16:0.400:2	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233397098	rs45559931	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,9:32:35:0.257:2	0/1:4,14:33:18:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233397909	rs78404265	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,43:33:108:0.398:2	0/1:30,31:32:61:0.508:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233398713	rs1033325	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,72:32:149:0.483:2	0/1:52,39:32:91:0.429:2	./.	./.	./.	0/1:77,48:31:125:0.384:2	0/1:47,22:31:69:0.319:2	./.	0/1:102,63:32:165:0.382:2	0/1:73,45:31:118:0.381:2	./.
chr1	233398749	rs143350155	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,108:32:185:0.584:2	./.	./.	./.	./.	./.
chr1	233498026	rs56052041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:29:23:0.304:2	./.
chr1	233514934	rs3795375	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,10:32:19:0.526:2	0/1:0,12:31:12:1.00:2	./.	0/1:6,10:32:16:0.625:2	0/1:13,12:29:25:0.480:2	./.	./.	./.	./.	./.	./.
chr1	233514975	rs3795374	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:32:14:0.429:2	0/1:3,12:31:15:0.800:2	./.	0/1:6,7:31:13:0.538:2	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.	./.	./.
chr1	233515071	rs963982	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,24:29:43:0.558:2	0/1:10,16:31:26:0.615:2	./.	0/1:24,17:29:41:0.415:2	0/1:41,17:27:58:0.293:2	./.	./.	./.	./.	./.	./.
chr1	233515102	rs963981	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,35:27:56:0.625:2	0/1:20,19:27:39:0.487:2	./.	0/1:38,24:28:63:0.387:2	0/1:61,42:27:103:0.408:2	./.	./.	./.	./.	./.	./.
chr1	233515413	rs1402815	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:33,43:31:76:0.566:2	./.	0/1:42,30:30:72:0.417:2	0/1:31,36:31:67:0.537:2	0/1:46,34:31:80:0.425:2	0/1:0,49:32:49:1.00:2	./.	0/1:31,40:32:71:0.563:2
chr1	233750066	rs147368935	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:33:22:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233767008	rs701224	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,72:31:132:0.545:2	./.	0/1:1,136:31:137:0.993:2	0/1:72,110:31:182:0.604:2	0/1:82,70:31:152:0.461:2	./.	./.
chr1	233767023	rs701225	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,65:33:130:0.500:2	./.	0/1:1,142:33:143:0.993:2	0/1:79,87:33:166:0.524:2	0/1:79,73:34:152:0.480:2	./.	0/1:136,4:33:140:0.029:2
chr1	233767059	rs701226	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,41:27:84:0.488:2	./.	0/1:1,86:28:87:0.989:2	0/1:54,50:28:104:0.481:2	0/1:52,47:28:99:0.475:2	./.	0/1:98,4:30:102:0.039:2
chr1	233785716	rs17814096	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,139:32:141:0.986:2	./.	0/1:3,121:32:124:0.976:2	./.	./.	./.	./.
chr1	233785786	rs4649241	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:64,64:28:128:0.500:2	0/1:46,36:29:82:0.439:2	0/1:15,4:28:19:0.211:2	./.	./.	0/1:77,72:29:149:0.483:2	./.	0/1:74,63:28:137:0.460:2	0/1:0,110:30:110:1.00:2	./.	0/1:1,124:28:125:0.992:2
chr1	234041422	rs57010808	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,60:30:128:0.469:2	0/1:51,54:30:105:0.514:2	0/1:2,120:30:122:0.984:2	./.	0/1:52,25:31:77:0.325:2	./.	0/1:32,43:30:75:0.573:2
chr1	234452420	rs373070068	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr1	234509259	rs10910420	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,15:32:15:1.00:2	0/1:3,3:30:6:0.500:2	0/1:33,26:32:59:0.441:2	0/1:28,17:32:45:0.378:2	./.	./.	0/1:37,28:32:65:0.431:2	0/1:1,42:34:43:0.977:2	0/1:0,42:32:42:1.00:2	0/1:31,29:33:60:0.483:2
chr1	234529519	rs1802871	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234529540	rs1134756	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234529552	rs2175594	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,100:33:103:0.971:2	0/1:0,65:32:65:1.00:2	./.	0/1:61,45:32:107:0.425:2	0/1:68,35:32:103:0.340:2	./.	./.	0/1:84,37:33:121:0.306:2	0/1:75,48:33:123:0.390:2	0/1:33,54:32:87:0.621:2	./.
chr1	234529570	rs2175593	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,84:32:87:0.966:2	0/1:0,51:31:51:1.00:2	./.	0/1:36,35:31:71:0.493:2	0/1:43,25:30:68:0.368:2	./.	./.	0/1:55,23:31:78:0.295:2	0/1:45,38:32:83:0.458:2	0/1:24,45:32:69:0.652:2	./.
chr1	234546245	rs1141264	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,90:32:92:0.978:2	0/1:0,34:32:34:1.00:2	0/1:5,4:32:9:0.444:2	0/1:43,44:32:87:0.506:2	0/1:42,20:32:62:0.323:2	./.	./.	0/1:49,29:32:78:0.372:2	0/1:67,31:33:98:0.316:2	0/1:62,25:32:87:0.287:2	./.
chr1	234563060	rs443685	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,76:32:153:0.497:2	./.	./.	0/1:99,96:32:195:0.492:2	0/1:95,88:33:183:0.481:2
chr1	234564928	rs373349199	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234564951	rs12135427	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:33:44:0.500:2	./.	./.
chr1	234569192	rs3754311	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:29:36:0.417:2	./.	./.	0/1:30,17:31:47:0.362:2	./.
chr1	234582583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:184:0.022:2	./.	./.	./.
chr1	234582651	rs4920246	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:96,93:33:189:0.492:2	0/1:88,71:32:159:0.447:2	0/1:1,180:32:181:0.994:2	./.	0/1:107,79:32:186:0.425:2	./.	./.	0/1:121,69:31:191:0.363:2
chr1	234582720	rs139816698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234584231	rs2102596	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,9:32:25:0.360:2	0/1:15,7:31:22:0.318:2	0/1:0,29:30:29:1.00:2	./.	0/1:21,12:32:33:0.364:2	./.	./.	0/1:17,21:32:38:0.553:2
chr1	234584288	rs114916639	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234601455	rs202014861	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,5:21:33:0.152:2
chr1	234601456	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:25:33:0.121:2	./.	./.	./.	./.	./.
chr1	234603322	rs60079444	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,94:32:177:0.531:2
chr1	234603386	rs270502	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,46:30:108:0.426:2	0/1:34,32:31:66:0.485:2	0/1:13,4:31:17:0.235:2	0/1:0,93:30:93:1.00:2	./.	./.	0/1:36,18:31:54:0.333:2	./.	0/1:62,57:31:119:0.479:2	./.	./.
chr1	234606998	rs3754307	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,105:29:183:0.574:2
chr1	234743237	rs7543281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234744250	rs8722	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,30:32:62:0.484:2	0/1:14,16:33:30:0.533:2	./.	0/1:0,66:31:66:1.00:2	./.	0/1:39,30:31:69:0.435:2	0/1:25,19:32:44:0.432:2	./.	./.	0/1:26,16:32:42:0.381:2	./.
chr1	235275367	rs145333621	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.	0/1:116,5:30:121:0.041:2
chr1	235275406	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.
chr1	235275408	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,6:31:77:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr1	235275411	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.
chr1	235275417	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr1	235291980	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:29:68:0.059:2	./.
chr1	235324276	rs112038793	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	./.	./.	./.	./.	./.
chr1	235324298	rs2295815	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:32:43:0.465:2	./.	0/1:28,15:32:43:0.349:2	./.	0/1:18,18:31:36:0.500:2	./.	0/1:12,8:31:20:0.400:2	./.
chr1	235324545	rs66929873	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,36:30:72:0.500:2	./.	0/1:42,33:29:75:0.440:2	./.	0/1:56,25:30:81:0.309:2	./.	0/1:24,18:30:42:0.429:2	./.
chr1	235345346	rs61730876	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:30:51:0.569:2	./.
chr1	235345813	rs59573098	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,59:29:106:0.557:2	./.	./.	./.	./.	./.	./.
chr1	235357427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr1	235383188	rs4659654	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:31:21:1.00:2	0/1:78,74:31:152:0.487:2	0/1:49,57:30:106:0.538:2	0/1:134,5:29:139:0.036:2	./.	0/1:4,150:30:154:0.974:2	0/1:85,83:30:168:0.494:2	0/1:80,83:29:164:0.509:2	./.
chr1	235383742	rs148132837	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,39:32:115:0.339:2	./.	./.	./.	./.
chr1	235392546	rs12731746	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:32:9:1.00:2	0/1:47,51:32:98:0.520:2	0/1:48,24:32:72:0.333:2	./.	./.	0/1:0,68:32:68:1.00:2	0/1:70,54:34:124:0.435:2	0/1:70,47:33:117:0.402:2	./.
chr1	235506336	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2
chr1	235506853	rs2803841	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:12,6:32:18:0.333:2	./.	./.	0/1:15,15:31:30:0.500:2	0/1:24,13:32:37:0.351:2	./.	./.
chr1	235506918	rs2789367	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:30:11:1.00:2	0/1:64,36:30:100:0.360:2	0/1:30,18:29:48:0.375:2	./.	0/1:66,4:32:70:0.057:2	0/1:0,90:30:90:1.00:2	0/1:51,50:31:102:0.495:2	0/1:43,43:30:86:0.500:2	./.
chr1	235507113	rs16832568	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,44:33:80:0.550:2	./.	./.	./.	0/1:35,33:33:68:0.485:2	./.	0/1:29,24:33:53:0.453:2	./.
chr1	235622029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	235652513	rs291396	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,40:32:77:0.519:2	0/1:35,16:33:51:0.314:2	./.	0/1:41,36:33:78:0.468:2	./.	./.	./.	0/1:55,57:32:113:0.509:2	0/1:49,38:32:87:0.437:2	0/1:29,49:33:78:0.628:2	0/1:37,33:32:70:0.471:2
chr1	235715523	rs14326	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:29:33:0.364:2	0/1:0,38:29:38:1.00:2	0/1:15,8:28:23:0.348:2	./.	0/1:13,11:29:24:0.458:2	./.	0/1:19,13:31:32:0.406:2	0/1:16,12:31:28:0.429:2
chr1	235850267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2
chr1	235866262	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:31:39:0.103:2	./.	./.	./.	./.	./.
chr1	235916436	rs199631995	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,63:32:130:0.485:2	./.	./.	./.
chr1	235922862	rs199857997	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2
chr1	235929493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr1	235940450	rs2273584	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,112:32:115:0.974:2	0/1:1,59:32:60:0.983:2	0/1:0,21:31:21:1.00:2	0/1:60,48:31:108:0.444:2	0/1:59,27:32:86:0.314:2	./.	0/1:48,15:32:63:0.238:2	0/1:59,48:31:107:0.449:2	0/1:85,52:32:137:0.380:2	0/1:0,80:32:80:1.00:2	./.
chr1	235945294	rs6696123	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,7:32:7:1.00:2	0/1:27,26:33:53:0.491:2	0/1:25,11:31:37:0.306:2	./.	0/1:8,19:32:27:0.704:2	0/1:32,13:32:45:0.289:2	0/1:26,34:34:60:0.567:2	0/1:0,37:32:37:1.00:2	./.
chr1	235952098	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.	./.
chr1	235955150	rs11583387	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:49,27:30:76:0.355:2	0/1:33,28:31:61:0.459:2	./.	./.	./.	0/1:34,43:32:77:0.558:2	0/1:24,27:32:51:0.529:2	./.
chr1	235969187	rs193054100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr1	235971763	rs3768066	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,13:32:24:0.542:2	0/1:83,59:32:142:0.415:2	0/1:93,74:32:168:0.443:2	./.	./.	./.	0/1:76,82:33:158:0.519:2	0/1:58,59:32:117:0.504:2	./.
chr1	235972435	rs3820553	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,8:34:8:1.00:2	0/1:31,50:33:81:0.617:2	0/1:43,34:32:77:0.442:2	./.	0/1:47,37:33:84:0.440:2	0/1:48,54:33:102:0.529:2	0/1:54,48:33:102:0.471:2	0/1:0,60:33:60:1.00:2	./.
chr1	235972867	rs1063128	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:1,29:33:30:0.967:2	0/1:0,6:31:6:1.00:2	0/1:22,36:33:58:0.621:2	0/1:20,21:32:41:0.512:2	./.	0/1:27,11:30:38:0.289:2	0/1:22,33:33:55:0.600:2	0/1:21,32:34:53:0.604:2	0/1:0,39:32:39:1.00:2	./.
chr1	235993709	rs33998267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:33:29:0.552:2
chr1	236141174	rs3213190	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,75:30:142:0.528:2	0/1:58,65:30:123:0.528:2	./.	0/1:99,74:30:173:0.428:2	0/1:162,4:32:166:0.024:2	0/1:163,5:33:168:0.030:2	0/1:64,51:29:115:0.443:2	./.
chr1	236141175	rs200359165	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:34:177:0.023:2	./.	./.	./.	./.
chr1	236144951	rs3738525	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:33:45:0.511:2	0/1:22,24:32:46:0.522:2	./.	0/1:24,22:33:46:0.478:2	./.	./.	0/1:18,16:32:34:0.471:2	./.
chr1	236157123	rs17854360	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:30:45:0.467:2
chr1	236157124	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2	./.	./.
chr1	236175327	rs3738531	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,14:31:28:0.500:2	0/1:18,4:32:22:0.182:2	./.	./.	0/1:34,15:28:51:0.306:2	./.	./.	./.	./.	./.	0/1:18,14:30:32:0.438:2
chr1	236175339	rs2031487	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,13:31:28:0.464:2	0/1:16,4:33:20:0.200:2	0/1:2,4:32:6:0.667:2	./.	0/1:29,15:31:44:0.341:2	./.	./.	./.	./.	./.	0/1:0,30:32:30:1.00:2
chr1	236208773	rs10733133	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,25:32:73:0.342:2	0/1:24,25:32:49:0.510:2	./.	0/1:45,28:32:73:0.384:2	./.	0/1:44,25:31:69:0.362:2	0/1:43,20:31:63:0.317:2	0/1:40,24:31:64:0.375:2	0/1:45,46:32:91:0.505:2	0/1:22,22:32:44:0.500:2	0/1:70,47:31:117:0.402:2
chr1	236212038	rs6665008	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:33:30:0.633:2	./.	0/1:13,12:32:25:0.480:2
chr1	236228158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2
chr1	236228234	rs147109154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:31:64:0.547:2
chr1	236381825	rs1055851	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,24:34:96:0.250:2	0/1:33,31:33:64:0.484:2	0/1:10,6:32:16:0.375:2	0/1:73,42:33:115:0.365:2	0/1:55,23:32:78:0.295:2	./.	0/1:53,14:33:67:0.209:2	0/1:57,37:33:94:0.394:2	0/1:85,46:34:131:0.351:2	./.	./.
chr1	236413230	rs2477599	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,22:32:61:0.361:2	0/1:23,13:31:36:0.361:2	./.	0/1:59,20:32:79:0.253:2	0/1:32,16:31:48:0.333:2	0/1:0,70:31:70:1.00:2	0/1:27,32:31:59:0.542:2	0/1:38,48:32:86:0.558:2	0/1:38,30:32:68:0.441:2	0/1:2,73:32:75:0.973:2	0/1:0,89:32:89:1.00:2
chr1	236415347	rs1749589	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,16:32:30:0.533:2	./.	0/1:59,29:31:88:0.330:2	./.	0/1:57,42:32:99:0.424:2	0/1:94,51:31:145:0.352:2	0/1:102,62:33:164:0.378:2	./.	./.
chr1	236557771	rs966365	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:2,47:32:49:0.959:2	0/1:7,6:32:13:0.462:2	0/1:0,135:32:135:1.00:2	0/1:1,89:31:90:0.989:2	0/1:1,99:30:100:0.990:2	0/1:86,50:31:136:0.368:2	0/1:78,47:32:125:0.376:2	0/1:0,139:33:139:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,90:31:90:1.00:2
chr1	236645609	rs114632254	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:28:59:0.356:2	./.	./.	./.
chr1	236645670	rs604070	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	0/1:29,34:32:63:0.540:2	0/1:53,28:30:81:0.346:2	./.	./.	./.	0/1:47,33:32:80:0.413:2	0/1:38,40:32:78:0.513:2
chr1	236689349	rs200944986	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:32:22:0.409:2	./.
chr1	236700807	rs1126407	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:31,22:29:53:0.415:2	0/1:0,41:30:41:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,28:29:28:1.00:2	0/1:26,27:30:53:0.509:2	./.	0/1:1,49:30:50:0.980:2	0/1:44,25:30:69:0.362:2
chr1	236700823	rs1041934	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:32,33:30:65:0.508:2	0/1:0,41:31:41:1.00:2	0/1:0,51:30:51:1.00:2	0/1:1,45:31:46:0.978:2	0/1:31,36:30:67:0.537:2	./.	0/1:0,62:31:62:1.00:2	0/1:47,27:31:74:0.365:2
chr1	236700857	rs1041935	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:45,39:31:84:0.464:2	0/1:0,61:31:61:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,59:31:59:1.00:2	0/1:37,54:31:91:0.593:2	./.	0/1:0,75:32:75:1.00:2	0/1:63,36:32:99:0.364:2
chr1	236702209	rs1041936	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:63,28:29:91:0.308:2	0/1:0,36:28:36:1.00:2	0/1:2,92:28:95:0.979:2	0/1:0,77:29:78:1.00:2	./.	./.	0/1:1,44:28:45:0.978:2	0/1:59,53:28:112:0.473:2
chr1	236702210	rs1041937	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:64,28:31:92:0.304:2	0/1:0,36:29:36:1.00:2	0/1:2,92:30:95:0.979:2	0/1:0,78:30:78:1.00:2	0/1:1,102:26:103:0.990:2	./.	0/1:0,45:30:45:1.00:2	0/1:58,53:30:111:0.477:2
chr1	236702374	rs2472126	G	A,C	.	PASS	AC=7,1;AF=0.292,0.042;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:29:13:1.00:2	0/1:31:163:0.448:2	0/1:31:70:0.986:2	0/1:30:128:1.00:2	0/1:31:84:0.988:2	0/2:33:167:0.464:2	./.	0/1:31:109:1.00:2	0/1:31:168:0.423:2
chr1	236706278	rs2273863	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,43:30:110:0.391:2	./.	./.	./.
chr1	236706283	rs2273864	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:125:0.033:2	./.	./.	./.	./.	./.
chr1	236706300	rs2273865	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,44:32:107:0.411:2	./.	./.	./.
chr1	236706862	rs17856495	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:55,35:31:91:0.389:2	0/1:0,90:31:90:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,81:31:81:1.00:2	0/1:46,48:32:94:0.511:2	0/1:0,73:32:74:1.00:2	0/1:57,49:32:106:0.462:2
chr1	236711323	rs15701	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,32:32:32:1.00:2	0/1:115,76:33:191:0.398:2	0/1:3,106:32:109:0.972:2	0/1:0,194:32:194:1.00:2	0/1:3,134:33:137:0.978:2	0/1:120,74:32:194:0.381:2	./.	0/1:0,191:33:191:1.00:2	0/1:112,80:33:192:0.417:2
chr1	236716888	rs6664730	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,38:31:76:0.500:2	./.	./.	./.
chr1	236716959	rs2275685	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:55,39:33:94:0.415:2	0/1:0,63:32:63:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,71:32:71:1.00:2	0/1:57,35:31:92:0.380:2	./.	0/1:1,58:33:59:0.983:2	0/1:54,53:33:107:0.495:2
chr1	236717926	rs2275687	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:32:22:1.00:2	0/1:113,73:33:186:0.392:2	0/1:4,147:32:151:0.974:2	0/1:0,153:32:153:1.00:2	0/1:4,158:32:162:0.975:2	0/1:107,71:32:178:0.399:2	./.	0/1:1,144:33:145:0.993:2	0/1:105,80:32:185:0.432:2
chr1	236718620	rs1126627	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:53,35:32:88:0.398:2	0/1:0,51:32:51:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,61:32:61:1.00:2	0/1:42,30:32:72:0.417:2	./.	0/1:0,73:32:73:1.00:2	0/1:44,33:32:77:0.429:2
chr1	236718726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2
chr1	236719135	rs1885532	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:33:8:1.00:2	0/1:65,66:32:131:0.504:2	0/1:0,73:32:73:1.00:2	0/1:1,81:32:82:0.988:2	0/1:0,77:31:77:1.00:2	0/1:0,96:32:96:1.00:2	0/1:54,58:32:112:0.518:2	0/1:0,74:33:74:1.00:2	0/1:0,124:32:124:1.00:2
chr1	236719193	rs1885533	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:28:10:1.00:2	0/1:56,59:29:115:0.513:2	0/1:1,86:28:87:0.989:2	0/1:3,82:29:85:0.965:2	0/1:5,97:30:102:0.951:2	0/1:69,68:29:138:0.496:2	./.	0/1:0,109:29:109:1.00:2	0/1:58,70:31:130:0.547:2
chr1	236721610	rs2275688	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:32:19:1.00:2	0/1:92,53:32:145:0.366:2	0/1:0,130:32:130:1.00:2	0/1:0,108:32:108:1.00:2	0/1:3,102:32:105:0.971:2	0/1:3,156:32:159:0.981:2	./.	0/1:1,129:32:130:0.992:2	0/1:100,65:32:165:0.394:2
chr1	236721660	rs2275689	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:33:16:1.00:2	0/1:109,55:33:164:0.335:2	0/1:1,96:32:97:0.990:2	0/1:0,119:32:119:1.00:2	0/1:1,99:33:100:0.990:2	0/1:1,154:33:155:0.994:2	0/1:107,68:34:175:0.389:2	0/1:2,127:33:129:0.984:2	0/1:108,75:33:183:0.410:2
chr1	236721679	rs61730303	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:33:92:0.402:2	./.	./.	./.	./.
chr1	236721731	rs819431	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:29:134:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,136:29:137:0.993:2	0/1:0,53:29:53:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,161:30:161:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,179:29:179:1.00:2
chr1	236721780	rs16833884	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:31:83:0.434:2	./.	./.	./.	0/1:43,54:32:97:0.557:2	./.
chr1	236722357	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:34:52:0.481:2	./.	./.
chr1	236723108	rs6661946	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,67:31:148:0.453:2	./.	./.	./.
chr1	236724504	rs1077439	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:31:11:1.00:2	0/1:32,19:31:51:0.373:2	0/1:0,33:31:33:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,18:32:18:1.00:2	0/1:1,33:31:34:0.971:2	./.	0/1:0,28:32:28:1.00:2	0/1:43,39:32:82:0.476:2
chr1	236729956	rs653737	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:1,22:30:23:0.957:2	./.	0/1:12,15:32:27:0.556:2	./.	./.	./.	./.	0/1:14,14:33:28:0.500:2	./.	./.
chr1	236730157	rs115684254	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2
chr1	236740135	rs16833953	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:33:64:0.547:2	./.	./.
chr1	236744712	rs4518892	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	0/1:0,14:30:14:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,6:29:6:1.00:2	./.	./.	0/1:0,10:30:10:1.00:2	0/1:5,5:32:10:0.500:2
chr1	236746443	rs2794768	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:31:13:1.00:2	0/1:75,51:32:126:0.405:2	0/1:1,93:31:94:0.989:2	0/1:2,145:31:147:0.986:2	0/1:1,106:31:107:0.991:2	0/1:88,89:31:177:0.503:2	./.	0/1:0,120:32:120:1.00:2	0/1:109,82:32:191:0.429:2
chr1	236748433	rs3738535	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:32:79:0.468:2	./.	./.	./.
chr1	236748505	rs1006456	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:27,14:34:41:0.341:2	0/1:0,39:33:39:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,33:33:33:1.00:2	0/1:24,24:32:48:0.500:2	./.	0/1:0,32:33:32:1.00:2	0/1:29,16:33:45:0.356:2
chr1	236749128	rs41308194	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,51:32:93:0.548:2	./.	./.	./.	0/1:59,30:32:89:0.337:2	./.
chr1	236749626	rs3738541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,66:32:174:0.379:2	./.	./.	./.
chr1	236749649	rs2794763	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:32:29:1.00:2	./.	0/1:0,148:32:148:1.00:2	0/1:2,175:32:177:0.989:2	0/1:1,177:32:178:0.994:2	./.	./.	0/1:2,168:32:170:0.988:2	0/1:85,103:32:188:0.548:2
chr1	236755837	rs2564739	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:104,29:32:133:0.218:2	0/1:0,45:31:45:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,40:32:40:1.00:2	0/1:104,62:31:166:0.373:2	./.	0/1:2,93:32:95:0.979:2	0/1:102,51:32:153:0.333:2
chr1	236758887	rs2794751	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:30:19:1.00:2	0/1:75,70:29:145:0.483:2	0/1:0,94:30:94:1.00:2	0/1:4,116:29:120:0.967:2	0/1:3,142:30:145:0.979:2	0/1:100,61:30:161:0.379:2	./.	0/1:1,112:30:113:0.991:2	0/1:76,62:28:138:0.449:2
chr1	236760181	rs12135515	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,50:32:76:0.658:2	./.	./.	./.	./.	./.	./.	./.
chr1	236767330	rs10802551	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:31:10:0.800:2	0/1:42,50:34:92:0.543:2	0/1:0,85:32:85:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,115:33:115:1.00:2	./.	0/1:63,52:33:115:0.452:2	0/1:1,79:32:80:0.988:2	0/1:55,47:33:102:0.461:2
chr1	236849999	rs121434525	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,45:30:84:0.536:2	./.	./.
chr1	236882303	rs1341864	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:28:57:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,112:30:112:1.00:2
chr1	236883421	rs1341863	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,150:33:150:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,146:32:146:1.00:2
chr1	236902618	rs142482143	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,12:32:36:0.333:2	./.	./.
chr1	236923064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:35:103:0.039:2	./.
chr1	236925844	rs12063382	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,50:32:103:0.485:2	./.	./.	./.	0/1:54,40:33:96:0.426:2	./.	./.
chr1	236990141	rs2229274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,78:32:171:0.456:2	./.	./.	./.
chr1	237023205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.
chr1	237048500	rs1805087	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,20:32:51:0.392:2	0/1:5,14:32:19:0.737:2	./.	0/1:13,9:33:22:0.409:2	0/1:26,20:33:46:0.435:2	./.	./.	./.
chr1	237054569	rs2229276	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,30:30:53:0.566:2	0/1:9,13:29:22:0.591:2	./.	./.	./.	0/1:0,54:30:54:1.00:2	./.	0/1:23,30:29:53:0.566:2	./.	0/1:0,48:30:48:1.00:2	0/1:31,20:30:51:0.392:2
chr1	237058744	rs12070777	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,31:30:72:0.431:2	0/1:16,36:32:52:0.692:2	./.	./.	./.	0/1:0,107:31:107:1.00:2	./.	0/1:45,61:30:106:0.575:2	./.	0/1:0,84:31:84:1.00:2	0/1:36,27:29:63:0.429:2
chr1	237058828	rs1131449	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,23:31:49:0.469:2	0/1:11,18:32:29:0.621:2	0/1:2,7:32:9:0.778:2	0/1:37,33:31:70:0.471:2	0/1:58,30:31:88:0.341:2	0/1:0,62:31:62:1.00:2	0/1:44,19:32:63:0.302:2	0/1:0,103:31:103:1.00:2	./.	0/1:0,54:31:54:1.00:2	0/1:40,33:31:73:0.452:2
chr1	237551441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.
chr1	237617757	rs3765097	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,16:31:36:0.444:2	0/1:21,15:32:36:0.417:2	0/1:0,8:30:8:1.00:2	0/1:1,49:30:50:0.980:2	0/1:24,23:31:47:0.489:2	0/1:31,17:29:48:0.354:2	0/1:1,54:32:55:0.982:2	./.	0/1:25,17:33:42:0.405:2	./.	0/1:41,31:31:72:0.431:2
chr1	237670055	rs180862949	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:32:43:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr1	237711797	rs2253273	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,77:29:79:0.975:2	0/1:0,52:29:52:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,123:30:123:1.00:2	0/1:2,98:29:100:0.980:2	0/1:2,111:30:113:0.982:2	0/1:0,112:30:112:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,104:30:105:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,95:30:95:1.00:2
chr1	237755074	rs75901196	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,9:14:64:0.141:2	./.
chr1	237755076	rs56229512	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,72:33:137:0.526:2	./.	./.	./.
chr1	237801770	rs707189	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:33:171:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,28:32:28:1.00:2	0/1:1,183:33:184:0.995:2	0/1:0,144:32:144:1.00:2	0/1:1,183:32:184:0.995:2	0/1:0,166:32:166:1.00:2	0/1:0,165:33:165:1.00:2	0/1:0,183:34:183:1.00:2	0/1:0,169:33:169:1.00:2	0/1:1,155:33:156:0.994:2
chr1	237804209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.
chr1	237814783	rs684923	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,55:32:111:0.495:2	0/1:31,43:32:74:0.581:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,55:32:55:1.00:2	0/1:1,122:31:123:0.992:2	0/1:52,39:32:91:0.429:2	./.	./.	0/1:0,93:33:93:1.00:2	0/1:83,53:33:136:0.390:2
chr1	237841390	rs34967813	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,17:29:45:0.378:2	0/1:45,52:30:97:0.536:2	0/1:24,26:30:50:0.520:2	0/1:3,76:30:79:0.962:2	0/1:2,98:31:100:0.980:2	./.	0/1:48,60:30:108:0.556:2
chr1	237863718	rs2797436	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:30:136:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,173:29:173:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,179:29:179:1.00:2	0/1:0,184:30:184:1.00:2	0/1:0,149:30:149:1.00:2	0/1:0,171:30:171:1.00:2
chr1	237881770	rs2797441	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:33:164:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,191:33:191:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,189:34:189:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,182:33:182:1.00:2
chr1	237890437	rs2685301	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,39:32:39:1.00:2
chr1	237905571	rs3753630	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	0/1:12,3:32:15:0.200:2	0/1:4,4:32:8:0.500:2	./.	./.	./.
chr1	237947000	rs56226196	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,60:31:132:0.455:2	./.	./.
chr1	237947171	rs41267517	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:31:72:0.431:2	./.	./.	./.	./.
chr1	237954725	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:34:116:0.034:2	./.	./.	./.	./.
chr1	237982461	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:32:135:0.037:2
chr1	238045834	rs34478438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.
chr1	238053918	rs35905278	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,67:29:139:0.482:2	./.	./.
chr1	240070944	rs2067481	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,56:31:124:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr1	240072668	rs72760745	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	0/1:26,15:31:41:0.366:2	0/1:14,12:32:26:0.462:2	./.	./.	./.	./.
chr1	240073226	rs4072234	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:31:16:0.438:2	0/1:36,29:31:65:0.446:2	0/1:28,26:30:54:0.481:2	0/1:37,28:30:65:0.431:2	0/1:32,26:31:58:0.448:2	./.	./.	0/1:17,15:32:32:0.469:2	./.
chr1	240073758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.
chr1	240074978	rs78586097	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,19:34:48:0.396:2	./.	./.	./.	./.	./.	./.	./.
chr1	240074981	rs6682184	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:33:11:0.818:2	0/1:29,19:34:48:0.396:2	0/1:21,13:32:34:0.382:2	0/1:33,31:31:64:0.484:2	0/1:17,16:33:33:0.485:2	./.	./.	./.	./.
chr1	240075733	rs77652383	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,36:32:114:0.316:2	./.
chr1	240075761	rs72760746	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:31:19:0.263:2	./.	./.	0/1:61,41:32:102:0.402:2	0/1:65,27:33:93:0.293:2	./.	./.	./.	./.
chr1	240075793	rs74882536	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,26:33:76:0.342:2	./.
chr1	240076145	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:35:164:0.025:2	./.	./.
chr1	240076608	rs10495449	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,14:29:32:0.438:2	0/1:19,15:27:34:0.441:2	0/1:14,13:31:27:0.481:2	./.	./.	./.	./.
chr1	240076797	rs112242951	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,52:32:77:0.675:2	./.	./.	./.	./.	./.	./.	./.
chr1	240077023	rs4431831	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	240077037	rs112416641	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr1	240077180	rs183356283	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,72:32:150:0.480:2	./.	./.	./.	./.
chr1	240077246	rs12021598	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,38:30:89:0.427:2	./.	./.	0/1:61,43:30:104:0.413:2
chr1	240077309	rs4659554	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:29:27:0.481:2	0/1:17,9:30:26:0.346:2	0/1:20,12:28:32:0.375:2	0/1:10,15:30:25:0.600:2	./.	./.	0/1:14,19:31:33:0.576:2	./.
chr1	240077669	rs6673859	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	0/1:25,16:32:41:0.390:2	0/1:11,30:32:41:0.732:2	./.	./.	./.	./.
chr1	240255941	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:28:125:0.040:2
chr1	240256822	rs10926124	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,4:34:5:0.800:2	0/1:1,3:31:4:0.750:2	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	0/1:0,4:35:4:1.00:2	./.	0/1:0,6:29:6:1.00:2
chr1	240341268	rs3765588	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,28:29:49:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr1	240370629	rs10926166	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,53:29:57:0.930:2	0/1:28,30:28:58:0.517:2	0/1:27,35:29:62:0.565:2	0/1:30,33:30:63:0.524:2	0/1:27,27:30:54:0.500:2	0/1:32,17:29:49:0.347:2	0/1:0,48:29:49:1.00:2
chr1	240370702	rs114291166	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:30:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	240370934	rs4997328	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,8:32:28:0.286:2	./.	0/1:10,6:30:16:0.375:2	0/1:29,13:32:42:0.310:2	0/1:28,7:31:35:0.200:2	./.	./.	./.
chr1	240370941	rs4997329	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:33:24:0.292:2	./.	0/1:7,5:31:12:0.417:2	0/1:24,8:32:32:0.250:2	0/1:25,5:31:30:0.167:2	./.	./.	./.
chr1	240370946	rs193049501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:34:14:0.214:2	./.	./.	./.	./.	./.
chr1	240370947	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:25:15:0.467:2	./.	./.	./.	./.	./.
chr1	240370967	rs200503778	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	240370985	rs111896385	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:31:17:0.588:2	./.	./.	0/1:6,4:31:10:0.400:2	0/1:4,3:33:7:0.429:2	./.	./.	./.
chr1	240371028	rs150923193	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.	./.	0/1:6,10:32:16:0.625:2	./.	./.	./.	./.
chr1	240371075	rs71646825	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:29:11:0.273:2	./.	./.	0/1:6,6:30:12:0.500:2	0/1:10,9:31:19:0.474:2	./.	./.	./.
chr1	240371085	rs71646826	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.	./.
chr1	240371106	rs11586155	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,7:29:9:0.778:2	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	0/1:1,11:28:12:0.917:2
chr1	240371112	rs71646889	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:26:7:0.857:2	./.	./.	./.	./.	./.	./.	./.
chr1	240371151	rs71646892	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:27:10:0.400:2	./.	0/1:5,4:21:9:0.444:2	./.	./.	./.	./.	./.
chr1	240371196	rs201173147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.
chr1	240371211	rs201587786	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:27:8:0.375:2	./.	./.	./.
chr1	240371223	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:1,2:33:3:0.667:2	./.	0/1:3,3:32:6:0.500:2
chr1	240371238	rs201302496	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.
chr1	240371426	rs200640213	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	240371554	rs12732924	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:28:2:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,4:28:4:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,4:28:4:1.00:2
chr1	240492734	rs3795677	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,57:33:158:0.361:2	0/1:50,37:32:87:0.425:2	0/1:1,14:32:15:0.933:2	0/1:79,57:32:136:0.419:2	./.	0/1:61,52:31:113:0.460:2	./.	./.	0/1:77,68:32:145:0.469:2	0/1:69,59:32:128:0.461:2	./.
chr1	240497265	rs10157874	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:34:113:1.00:2	0/1:2,64:33:66:0.970:2	0/1:2,11:33:13:0.846:2	0/1:0,140:33:140:1.00:2	./.	0/1:58,60:33:118:0.508:2	0/1:46,45:33:91:0.495:2	0/1:58,76:33:134:0.567:2	0/1:65,71:35:136:0.522:2	0/1:94,55:33:149:0.369:2	./.
chr1	240635683	rs183078344	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,31:30:86:0.360:2	./.	./.	./.	./.	./.	./.	./.
chr1	240635749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:33:37:0.108:2	./.	./.
chr1	241031877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:34:133:0.030:2	./.	./.	./.	./.	./.	./.
chr1	241663742	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	0/1:87,6:30:93:0.065:2	./.	./.	./.
chr1	241663769	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	0/1:106,6:32:112:0.054:2	./.	./.	./.
chr1	241667402	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,7:32:117:0.060:2	./.	./.	./.	./.	./.
chr1	241712134	rs11556464	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:30:13:0.769:2	0/1:5,6:30:11:0.545:2	0/1:9,6:30:15:0.400:2	./.	./.	./.	0/1:0,21:30:21:1.00:2	./.
chr1	241729889	rs142152979	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	241755348	rs1053230	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	0/1:37,31:32:68:0.456:2	./.	0/1:40,35:32:75:0.467:2	./.	./.	0/1:58,39:32:97:0.402:2
chr1	241757928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:33:88:0.068:2	./.
chr1	241767627	rs141356521	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,55:28:125:0.440:2	./.	./.	./.	./.	./.
chr1	241767708	rs2273712	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,67:31:167:0.401:2	./.	./.	./.	0/1:57,68:33:125:0.544:2	./.	./.
chr1	241797596	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.
chr1	241797628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.
chr1	241798443	rs41269377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:29:52:0.404:2	./.	./.	./.
chr1	241798631	rs3737604	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:43,39:32:82:0.476:2	0/1:25,16:31:41:0.390:2	./.	0/1:25,21:31:46:0.457:2	0/1:36,21:32:57:0.368:2	0/1:57,36:33:93:0.387:2	0/1:26,16:31:42:0.381:2	0/1:66,57:32:123:0.463:2
chr1	241815908	rs185609089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	241907706	rs41310585	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:32:59:0.492:2	0/1:20,17:32:37:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	241907817	rs10802990	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,49:28:49:1.00:2	0/1:6,8:29:14:0.571:2	0/1:2,115:29:117:0.983:2	0/1:32,43:28:75:0.573:2	0/1:61,70:29:131:0.534:2	0/1:46,54:29:100:0.540:2	0/1:65,56:29:121:0.463:2	./.	0/1:36,42:29:78:0.538:2	0/1:0,99:29:99:1.00:2
chr1	241929542	rs12095445	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,32:32:60:0.533:2	0/1:60,27:31:87:0.310:2	./.	./.	./.	0/1:43,43:32:86:0.500:2	./.
chr1	241951329	rs12074374	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2	0/1:22,9:32:31:0.290:2	./.	./.	./.	0/1:20,20:33:40:0.500:2	./.
chr1	241964492	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:30:17:0.176:2	./.	./.	./.	./.	./.	./.	./.
chr1	242020734	rs78172944	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,6:19:56:0.107:2	./.	./.	0/1:58,10:17:68:0.147:2	0/1:54,11:14:65:0.169:2	./.	./.	0/1:74,13:14:87:0.149:2	0/1:79,14:15:93:0.151:2	0/1:39,9:14:48:0.188:2	0/1:80,12:17:92:0.130:2
chr1	242021959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.	./.
chr1	242023882	rs149397534	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,37:32:102:0.363:2	0/1:30,36:32:66:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	242030151	rs735943	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,13:28:36:0.361:2	0/1:0,24:29:24:1.00:2	./.	0/1:0,22:28:22:1.00:2	0/1:29,20:28:49:0.408:2	0/1:1,38:29:39:0.974:2	0/1:15,20:29:35:0.571:2	0/1:22,20:28:42:0.476:2
chr1	242035438	rs4149965	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,20:31:79:0.253:2	./.	0/1:53,20:31:73:0.274:2	./.	0/1:87,67:32:154:0.435:2	0/1:52,60:32:112:0.536:2	0/1:106,70:31:176:0.398:2
chr1	242042301	rs1047840	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,33:31:74:0.452:2	0/1:26,16:32:42:0.381:2	0/1:0,9:30:9:1.00:2	./.	0/1:31,18:31:49:0.367:2	0/1:34,35:30:69:0.507:2	0/1:37,28:31:65:0.431:2	./.	0/1:52,45:32:97:0.464:2	0/1:54,35:31:89:0.393:2	./.
chr1	242042545	rs1776148	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,20:32:49:0.408:2	0/1:15,17:32:32:0.531:2	./.	0/1:27,35:32:62:0.565:2	0/1:0,65:32:65:1.00:2	0/1:37,27:32:64:0.422:2	0/1:0,73:32:73:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,61:33:61:1.00:2	./.	0/1:42,41:33:83:0.494:2
chr1	242045275	rs1635498	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,52:32:111:0.468:2	0/1:35,28:32:63:0.444:2	0/1:2,23:32:25:0.920:2	0/1:0,95:32:95:1.00:2	0/1:0,83:32:83:1.00:2	0/1:58,87:31:145:0.600:2	0/1:0,104:32:104:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,155:33:155:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,151:32:151:1.00:2
chr1	242045283	rs4149984	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,54:33:106:0.509:2	0/1:30,32:32:63:0.516:2	./.	./.	./.	0/1:81,52:31:133:0.391:2	./.	./.	./.	./.	./.
chr1	242048674	rs9350	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:33:36:0.389:2	./.	./.
chr1	242159614	rs55813237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,43:31:105:0.410:2	./.
chr1	243289787	rs10881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.
chr1	243327939	.	A	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,5:31:49:0.102:2	./.	0/1:177,16:30:194:0.083:2	0/1:186,9:31:196:0.046:2	0/1:164,32:30:196:0.163:2	0/1:177,14:31:192:0.073:2	./.	0/1:183,10:30:194:0.052:2	0/1:167,24:29:191:0.126:2
chr1	243328208	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,37:33:190:0.195:2	0/1:162,19:31:181:0.105:2	0/1:56,9:31:65:0.138:2	0/1:163,24:32:187:0.128:2	0/1:151,35:32:186:0.188:2	0/1:161,27:32:188:0.144:2	0/1:173,20:33:193:0.104:2	0/1:170,19:32:189:0.101:2	0/1:168,22:33:190:0.116:2	0/1:168,28:32:196:0.143:2	0/1:158,28:32:186:0.151:2
chr1	243328408	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,16:31:197:0.082:2	./.	./.	./.	./.	./.	./.
chr1	243328887	rs199575184	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	0/1:30,4:32:34:0.118:2	0/1:32,3:31:35:0.086:2	./.	./.	0/1:90,15:31:105:0.143:2
chr1	243329049	rs3766664	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,10:29:34:0.294:2	./.	0/1:102,37:32:139:0.266:2	0/1:138,45:31:183:0.246:2	0/1:102,44:31:147:0.301:2	0/1:118,44:31:162:0.272:2	./.	0/1:140,38:32:178:0.213:2	0/1:106,50:32:156:0.321:2
chr1	243329075	rs61833876	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,8:31:29:0.276:2	./.	0/1:95,24:32:119:0.202:2	0/1:131,29:33:160:0.181:2	0/1:89,32:33:121:0.264:2	0/1:108,27:33:135:0.200:2	./.	0/1:125,24:33:149:0.161:2	0/1:135,40:33:175:0.229:2
chr1	243329211	rs200480235	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,10:31:109:0.092:2	0/1:126,16:31:142:0.113:2	0/1:115,19:31:134:0.142:2	0/1:153,10:26:163:0.061:2	./.	0/1:141,14:27:155:0.090:2	0/1:148,42:31:190:0.221:2
chr1	243332978	rs182591395	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,44:31:189:0.233:2	./.	./.	./.	./.	./.	./.
chr1	243336019	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,5:31:161:0.031:2	./.	./.	./.	./.	./.	./.
chr1	243354791	rs144272877	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:33:13:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,17:32:17:1.00:2	0/1:1,20:30:21:0.952:2	0/1:0,24:32:24:1.00:2
chr1	243419493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.
chr1	243493888	rs74701277	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,18:16:127:0.143:2	./.	0/1:96,14:17:110:0.127:2	0/1:107,22:14:130:0.171:2	0/1:115,20:16:135:0.148:2	0/1:122,25:14:147:0.170:2	0/1:87,14:13:101:0.139:2	0/1:101,14:21:115:0.122:2
chr1	243493907	rs2275155	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:31:16:0.688:2	./.	./.	0/1:56,58:30:114:0.509:2	0/1:64,52:29:116:0.448:2	0/1:67,47:30:114:0.412:2	./.	0/1:47,60:31:107:0.561:2	0/1:61,49:30:111:0.445:2
chr1	243579112	rs10927011	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,152:32:155:0.981:2	0/1:0,89:32:89:1.00:2	0/1:12,11:32:23:0.478:2	0/1:94,65:32:159:0.409:2	0/1:1,125:31:126:0.992:2	0/1:109,67:32:176:0.381:2	0/1:73,65:32:138:0.471:2	0/1:77,98:32:175:0.560:2	0/1:2,169:33:171:0.988:2	0/1:77,71:32:148:0.480:2	0/1:95,76:32:171:0.444:2
chr1	243859017	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:33:22:0.500:2	./.
chr1	244218591	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:34:161:0.025:2	./.	./.	./.	./.	./.	./.
chr1	244219563	rs2486536	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:29:14:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,30:31:30:1.00:2
chr1	244582097	rs201194182	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,49:31:108:0.454:2	./.	./.	./.	./.	./.	./.
chr1	244641216	rs11586356	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,70:32:198:0.354:2	./.	./.	./.
chr1	244724092	rs7544794	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,97:33:98:0.990:2	0/1:0,41:32:41:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	244735858	rs10927267	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,114:31:116:0.991:2	0/1:0,72:30:72:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	244754961	rs41269387	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,150:32:153:0.980:2	0/1:3,92:31:95:0.968:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	244816592	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:28:12:0.250:2	./.	./.	./.	./.
chr1	244817239	rs41269389	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:31:62:0.468:2	0/1:22,20:32:42:0.476:2	./.	./.	./.	./.
chr1	244999067	rs192100928	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	245006349	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	0/1:68,5:32:73:0.068:2	./.	./.	./.	./.	./.
chr1	245006464	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:36:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	245027349	rs6675421	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:29:8:0.625:2	0/1:8,4:30:12:0.333:2	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	0/1:0,5:28:5:1.00:2	./.	./.
chr1	245133489	rs7545078	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,6:29:6:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,3:34:4:0.750:2	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,4:29:4:1.00:2
chr1	245133539	rs7542813	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,4:33:4:1.00:2	./.	./.
chr1	245245378	rs10927386	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,7:31:25:0.280:2	0/1:6,7:26:13:0.538:2	./.	./.	./.	./.	./.	./.	0/1:11,14:30:25:0.560:2	0/1:0,14:29:14:1.00:2	./.
chr1	245245402	rs10927387	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,9:34:29:0.310:2	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	./.	0/1:16,18:32:34:0.529:2	0/1:0,22:31:22:1.00:2	./.
chr1	245704130	rs61754898	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,30:32:81:0.370:2	./.	./.	./.	0/1:50,48:32:98:0.490:2	./.	0/1:44,43:32:87:0.494:2	./.
chr1	245848996	rs61744484	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.
chr1	245849000	rs61744485	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2	./.	./.	./.	0/1:13,24:32:37:0.649:2	./.	0/1:21,13:30:34:0.382:2
chr1	245849969	rs116468848	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	0/1:26,25:31:51:0.490:2	./.	0/1:22,13:31:35:0.371:2	./.	./.	./.
chr1	245850095	rs871840	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,59:30:111:0.532:2	./.	./.	./.	0/1:36,33:30:69:0.478:2	./.	0/1:25,22:31:47:0.468:2
chr1	245850205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.
chr1	245851304	rs6701084	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,9:27:9:1.00:2
chr1	245861571	rs3205034	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:31:13:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,17:32:17:1.00:2	0/1:2,5:30:7:0.714:2	./.	0/1:4,4:30:8:0.500:2	0/1:8,14:32:22:0.636:2	0/1:0,10:32:10:1.00:2	0/1:0,3:32:3:1.00:2	./.
chr1	246021851	rs34527613	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,64:32:124:0.516:2	./.	./.	./.	./.	./.	0/1:51,51:30:102:0.500:2
chr1	246021941	rs2362587	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,43:29:90:0.478:2	0/1:24,28:29:52:0.538:2	0/1:0,17:28:17:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,113:28:113:1.00:2	0/1:75,71:30:146:0.486:2	0/1:70,87:30:157:0.554:2	0/1:81,55:28:136:0.404:2	0/1:87,65:29:152:0.428:2	./.	0/1:0,99:29:99:1.00:2
chr1	246518363	rs150745026	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:34:174:0.023:2
chr1	246670481	rs7520453	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,17:30:43:0.395:2	0/1:20,14:31:34:0.412:2	0/1:6,13:32:19:0.684:2	0/1:46,43:32:89:0.483:2	0/1:0,75:32:75:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,50:32:50:1.00:2	0/1:1,76:31:77:0.987:2	0/1:0,54:33:54:1.00:2	0/1:2,50:32:52:0.962:2	0/1:0,38:31:38:1.00:2
chr1	246707858	rs3129568	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,46:31:94:0.489:2	0/1:22,29:29:51:0.569:2	0/1:5,11:29:16:0.688:2	0/1:50,53:31:103:0.515:2	./.	0/1:41,46:30:87:0.529:2	./.	0/1:53,49:30:102:0.480:2	0/1:74,47:30:121:0.388:2	./.	./.
chr1	246714587	rs10754526	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,30:33:83:0.361:2	0/1:0,30:32:30:1.00:2	0/1:35,20:32:55:0.364:2	0/1:1,27:33:28:0.964:2	./.	./.	0/1:19,17:33:36:0.472:2	0/1:52,20:33:72:0.278:2
chr1	246720798	rs3124071	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:31:112:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,74:31:74:1.00:2	0/1:1,115:31:116:0.991:2	0/1:0,123:32:123:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,157:32:157:1.00:2
chr1	246729251	rs143880306	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:32:79:0.481:2	./.	0/1:33,41:31:74:0.554:2
chr1	246755124	rs6702823	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:28:66:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,8:28:8:1.00:2	0/1:1,82:27:83:0.988:2	0/1:1,68:28:69:0.986:2	0/1:51,54:27:105:0.514:2	0/1:0,73:28:73:1.00:2	0/1:0,86:27:86:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,79:27:79:1.00:2	0/1:0,104:27:104:1.00:2
chr1	246784883	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2
chr1	246922390	rs1127098	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,65:32:171:0.380:2	./.	./.	./.	./.
chr1	246930564	rs7779	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,36:31:78:0.462:2	0/1:34,23:30:57:0.404:2	./.	./.	./.	0/1:72,73:30:145:0.503:2	./.	./.	0/1:81,63:30:144:0.438:2	./.	./.
chr1	246939513	rs3795467	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,35:31:66:0.530:2	0/1:16,16:32:32:0.500:2	0/1:1,8:32:9:0.889:2	./.	./.	0/1:34,38:30:72:0.528:2	./.	./.	0/1:34,26:31:61:0.433:2	./.	0/1:54,28:31:82:0.341:2
chr1	246939856	rs3795465	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,49:32:107:0.458:2	0/1:24,32:32:56:0.571:2	./.	0/1:63,43:32:106:0.406:2	0/1:74,42:31:117:0.362:2	0/1:58,55:31:113:0.487:2	0/1:90,46:32:136:0.338:2	0/1:71,39:31:110:0.355:2	0/1:81,59:31:140:0.421:2	0/1:58,35:31:93:0.376:2	0/1:73,52:32:125:0.416:2
chr1	246939943	rs6685364	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,45:33:97:0.464:2	0/1:31,29:33:60:0.483:2	./.	0/1:83,50:33:133:0.376:2	0/1:50,38:32:88:0.432:2	0/1:89,50:33:139:0.360:2	./.	0/1:81,57:33:138:0.413:2	0/1:81,56:33:137:0.409:2	0/1:61,50:32:111:0.450:2	0/1:63,54:32:117:0.462:2
chr1	246942159	rs7512440	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:39,37:31:77:0.487:2	0/1:20,26:31:46:0.565:2	0/1:11,8:30:19:0.421:2	./.	./.	0/1:61,58:30:119:0.487:2	./.	./.	0/1:56,45:32:101:0.446:2	./.	0/1:76,43:31:119:0.361:2
chr1	246942171	rs4926444	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,51:32:135:0.378:2	./.	./.	./.	./.
chr1	247004226	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.
chr1	247006051	rs12410563	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,36:33:81:0.444:2	0/1:30,10:33:40:0.250:2	./.	./.	./.	./.	0/1:38,43:31:81:0.531:2	./.	./.	./.	./.
chr1	247013009	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	0/1:165,5:33:170:0.029:2	./.	./.	./.	./.
chr1	247013018	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.	./.	./.	./.	./.	./.
chr1	247016564	rs372686736	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247019031	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,3:30:28:0.107:2	./.	./.	./.	./.	./.	./.
chr1	247021085	rs41308162	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,78:32:170:0.459:2	./.	./.	./.	./.	./.
chr1	247024326	rs41304151	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,85:32:195:0.436:2
chr1	247024359	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:182,5:33:187:0.027:2	0/1:168,6:28:174:0.034:2	./.	./.	0/1:189,6:33:195:0.031:2	./.	./.	./.	./.	./.	./.
chr1	247024455	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,6:30:141:0.043:2	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	0/1:182,5:31:188:0.027:2
chr1	247025380	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:148,13:33:161:0.081:2	0/1:140,10:33:151:0.067:2	./.	./.	./.	./.	./.	0/1:152,13:33:166:0.079:2	./.	./.	0/1:181,14:34:195:0.072:2
chr1	247027301	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:31:159:0.031:2	./.	./.	./.	./.	./.
chr1	247048834	rs2642990	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,83:33:183:0.456:2	0/1:98,81:33:180:0.453:2	0/1:19,13:33:32:0.406:2	0/1:124,71:33:195:0.364:2	./.	0/1:127,67:32:194:0.345:2	0/1:2,143:33:145:0.986:2	./.	0/1:0,174:34:174:1.00:2	0/1:121,73:33:194:0.376:2	./.
chr1	247063386	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:27:67:0.060:2	./.	./.	./.	./.
chr1	247065846	rs185927135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,21:31:34:0.618:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247068888	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:29:198:0.025:2	./.	./.
chr1	247070883	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:29:93:0.043:2	./.	./.	./.	./.
chr1	247079559	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:158,37:32:195:0.190:2	0/1:116,17:32:133:0.128:2	./.	./.	./.	./.	./.	0/1:156,34:31:190:0.179:2	./.	./.	0/1:165,30:31:195:0.154:2
chr1	247094670	rs138217683	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:28:5:0.600:2	./.	./.
chr1	247150740	rs3749427	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,16:30:38:0.421:2	0/1:12,19:32:31:0.613:2	0/1:2,3:32:5:0.600:2	0/1:18,24:33:42:0.571:2	0/1:1,29:32:30:0.967:2	0/1:1,35:32:36:0.972:2	0/1:0,54:32:54:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:34,27:33:61:0.443:2
chr1	247151213	rs185949656	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,13:32:32:0.406:2	./.	./.	./.	./.	./.	./.
chr1	247151487	rs55762230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,54:31:110:0.491:2	./.	./.
chr1	247151557	rs2642992	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,14:33:27:0.519:2	0/1:1,8:32:9:0.889:2	./.	0/1:14,14:32:28:0.500:2	0/1:0,19:32:19:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,11:31:11:1.00:2	0/1:16,10:33:26:0.385:2
chr1	247162658	rs2642973	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,64:32:64:1.00:2	0/1:8,5:31:13:0.385:2	0/1:0,133:31:133:1.00:2	0/1:0,153:31:153:1.00:2	0/1:0,133:31:133:1.00:2	0/1:0,150:31:150:1.00:2	0/1:1,161:31:162:0.994:2	0/1:74,63:32:137:0.460:2	0/1:0,150:31:150:1.00:2	0/1:100,77:31:177:0.435:2
chr1	247201591	rs61748726	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,68:33:171:0.398:2	./.	./.
chr1	247241850	rs41305955	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:32:68:0.522:2	./.	0/1:28,28:32:56:0.500:2	0/1:26,31:33:57:0.544:2	0/1:22,14:32:36:0.389:2	./.
chr1	247263973	rs35316550	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:32:65:0.508:2	./.	./.	./.	./.
chr1	247265061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.
chr1	247267274	rs4925692	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.	0/1:12,18:30:30:0.600:2	./.	0/1:10,21:29:31:0.677:2	0/1:15,10:31:25:0.400:2	0/1:0,14:30:14:1.00:2	0/1:5,9:31:14:0.643:2
chr1	247319928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.	./.
chr1	247320105	rs33998996	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,68:32:165:0.412:2	./.	./.	./.
chr1	247320258	rs41304032	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,37:32:88:0.420:2	./.	./.	./.	./.	0/1:38,42:32:80:0.525:2	./.
chr1	247320868	rs11806327	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.
chr1	247322298	rs6675536	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,54:31:56:0.964:2	0/1:16,6:30:22:0.273:2	./.	./.	0/1:27,32:32:59:0.542:2	./.	0/1:22,27:32:49:0.551:2	./.
chr1	247419509	rs1778540	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,52:33:107:0.486:2	0/1:33,20:33:53:0.377:2	0/1:0,21:31:21:1.00:2	0/1:46,45:32:91:0.495:2	0/1:0,51:31:51:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,86:32:87:0.989:2	0/1:60,62:33:122:0.508:2	0/1:0,86:32:86:1.00:2	0/1:0,128:32:128:1.00:2
chr1	247419664	rs1778541	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,44:33:89:0.494:2	0/1:25,25:32:50:0.500:2	0/1:0,10:32:10:1.00:2	0/1:43,46:33:89:0.517:2	0/1:0,87:32:87:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,94:32:94:1.00:2	0/1:1,98:32:99:0.990:2	0/1:51,64:33:115:0.557:2	0/1:0,90:33:90:1.00:2	0/1:0,121:33:121:1.00:2
chr1	247420421	rs41308154	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,29:32:57:0.509:2	0/1:14,14:32:28:0.500:2	./.	0/1:22,17:32:39:0.436:2	0/1:14,20:32:34:0.588:2	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.
chr1	247587408	rs7525979	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,83:32:169:0.491:2	./.	./.	./.	0/1:91,73:33:164:0.445:2	./.	./.
chr1	247587477	rs3806268	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,82:31:85:0.965:2	0/1:0,56:31:56:1.00:2	./.	./.	0/1:36,41:30:77:0.532:2	./.	./.	0/1:1,94:31:95:0.989:2	0/1:49,48:32:97:0.495:2	0/1:0,79:32:79:1.00:2	0/1:52,48:31:100:0.480:2
chr1	247587531	rs4925543	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:55:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,7:32:7:1.00:2	0/1:35,36:33:71:0.507:2	0/1:0,55:32:55:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,61:32:61:1.00:2
chr1	247587771	rs41311573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247588053	rs34298354	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,55:30:55:1.00:2	0/1:0,30:31:30:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2
chr1	247588858	rs35829419	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:32:25:0.440:2	./.	0/1:17,11:31:28:0.393:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.
chr1	247593000	rs180177473	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247614386	rs12070953	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:32:28:0.286:2	0/1:24,27:32:51:0.529:2	0/1:21,14:31:35:0.400:2	./.	./.	./.	0/1:23,20:32:43:0.465:2
chr1	247614407	rs12065526	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,5:29:29:0.172:2	0/1:33,31:30:64:0.484:2	0/1:25,9:30:34:0.265:2	./.	./.	./.	0/1:24,23:31:47:0.489:2
chr1	247614553	rs12086048	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,47:31:80:0.588:2	0/1:36,34:31:70:0.486:2	0/1:29,33:31:63:0.532:2	./.	./.	./.	0/1:51,37:30:88:0.420:2
chr1	247614617	rs4925663	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:30:10:0.400:2	0/1:43,35:31:78:0.449:2	./.	./.	./.	0/1:0,63:30:63:1.00:2	0/1:40,30:32:70:0.429:2	0/1:27,36:32:63:0.571:2	./.
chr1	247614693	rs6695302	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,83:31:84:1.00:2	0/1:1,66:30:67:0.985:2	0/1:0,90:31:90:1.00:2
chr1	247614896	rs11583410	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:36,21:31:57:0.368:2	0/1:40,16:30:56:0.286:2	0/1:17,25:31:42:0.595:2	0/1:22,20:30:42:0.476:2	./.	0/1:28,24:32:52:0.462:2	0/1:0,40:32:40:1.00:2	./.
chr1	247615183	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,14:30:57:0.246:2
chr1	247615252	rs12028142	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,19:31:50:0.380:2	./.	./.	./.	0/1:35,18:31:53:0.340:2	0/1:41,26:31:67:0.388:2	./.	./.
chr1	247654493	rs79802002	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,90:31:194:0.464:2	./.	./.	./.	./.	./.
chr1	247654498	rs61070846	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,9:30:42:0.214:2	./.	./.	./.	./.	./.	0/1:101,84:32:185:0.454:2	./.	0/1:101,79:32:180:0.439:2
chr1	247654993	rs10925061	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,60:32:122:0.492:2	0/1:74,65:32:139:0.468:2	0/1:78,80:33:158:0.506:2	./.	./.	0/1:49,37:33:86:0.430:2	./.
chr1	247655102	rs143904230	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,57:33:123:0.463:2	./.	./.
chr1	247655275	rs12141850	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,24:31:81:0.296:2	0/1:0,90:32:90:1.00:2	0/1:51,45:32:96:0.469:2	./.	./.	0/1:55,41:31:97:0.427:2	./.
chr1	247694949	rs6702693	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,36:33:89:0.404:2	0/1:40,38:32:78:0.487:2	./.	0/1:66,62:32:128:0.484:2	./.	./.	0/1:79,52:32:131:0.397:2	0/1:87,55:32:142:0.387:2	./.	./.	./.
chr1	247694958	rs6702695	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,35:32:84:0.417:2	0/1:33,41:32:74:0.554:2	./.	0/1:62,62:31:124:0.500:2	./.	./.	0/1:80,49:31:129:0.380:2	0/1:83,59:31:142:0.415:2	./.	./.	0/1:71,59:32:130:0.454:2
chr1	247695427	rs34220133	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,41:33:70:0.586:2	0/1:40,56:32:96:0.583:2	./.	./.	./.	0/1:53,52:33:105:0.495:2	0/1:35,31:32:66:0.470:2	./.
chr1	247695612	rs6657127	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,158:32:159:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,106:31:106:1.00:2
chr1	247695756	rs6697472	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:30:97:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,94:31:94:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,103:30:104:1.00:2	0/1:1,78:30:79:0.987:2	0/1:0,86:30:86:1.00:2	0/1:0,93:30:93:1.00:2
chr1	247719769	rs56043070	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	./.
chr1	247737493	rs115796168	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,77:33:143:0.538:2	./.	./.	./.	./.	./.	0/1:55,71:32:126:0.563:2	./.
chr1	247751731	rs12737801	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,87:33:198:0.439:2	./.	./.	./.	./.	./.	0/1:98,98:33:196:0.500:2	0/1:107,91:33:198:0.460:2
chr1	247752019	rs1151687	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,85:33:173:0.491:2	0/1:67,67:32:134:0.500:2	0/1:21,10:33:31:0.323:2	0/1:3,180:33:183:0.984:2	./.	0/1:105,88:32:194:0.456:2	./.	0/1:97,92:33:189:0.487:2	0/1:100,93:33:194:0.482:2	0/1:1,178:33:179:0.994:2	0/1:95,91:33:186:0.489:2
chr1	247752109	rs61732336	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:32:182:0.473:2	./.	./.	./.	0/1:99,87:32:186:0.468:2
chr1	247752161	rs10925085	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,98:31:191:0.513:2	0/1:56,48:30:104:0.462:2	0/1:9,14:31:23:0.609:2	0/1:102,89:30:191:0.466:2	0/1:3,179:29:184:0.984:2	0/1:90,99:30:189:0.524:2	0/1:111,83:30:194:0.428:2	0/1:125,73:29:198:0.369:2	0/1:85,101:30:186:0.543:2	./.	0/1:106,91:30:198:0.462:2
chr1	247752367	rs869111	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,78:32:170:0.459:2	0/1:82,71:30:153:0.464:2	0/1:16,13:31:29:0.448:2	0/1:100,79:31:179:0.441:2	./.	0/1:82,96:30:178:0.539:2	0/1:100,77:30:177:0.435:2	0/1:110,84:30:194:0.433:2	./.	0/1:103,71:31:175:0.408:2	0/1:0,172:31:172:1.00:2
chr1	247769062	rs61748963	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,95:33:195:0.487:2	./.	./.	./.	./.	./.	0/1:97,81:33:178:0.455:2	./.
chr1	247769217	rs61750030	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,88:30:186:0.473:2	./.	./.	./.	./.
chr1	247769592	rs1151683	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:30:35:0.457:2	./.	./.	0/1:107,89:30:196:0.454:2	./.	./.	0/1:101,90:31:191:0.471:2	0/1:101,89:30:191:0.468:2	./.
chr1	247769752	rs61730407	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,28:31:78:0.359:2	0/1:26,22:31:48:0.458:2	./.	0/1:31,31:30:62:0.500:2	./.	0/1:41,39:29:80:0.488:2	0/1:41,30:30:71:0.423:2	0/1:41,40:30:81:0.494:2	./.	0/1:28,33:30:61:0.541:2	./.
chr1	247835674	rs28446289	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,32:33:70:0.457:2	0/1:21,27:32:48:0.563:2	0/1:7,5:33:12:0.417:2	0/1:0,89:32:89:1.00:2	0/1:5,74:32:79:0.937:2	./.	0/1:59,50:33:109:0.459:2	0/1:2,71:33:73:0.973:2	./.	0/1:43,27:33:70:0.386:2	0/1:51,56:33:107:0.523:2
chr1	247835908	rs28556931	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,47:33:104:0.452:2	0/1:38,23:33:61:0.377:2	0/1:8,6:31:14:0.429:2	0/1:0,109:32:109:1.00:2	0/1:2,99:32:102:0.980:2	./.	0/1:78,60:32:138:0.435:2	0/1:1,138:32:139:0.993:2	./.	0/1:49,37:32:86:0.430:2	0/1:65,42:32:107:0.393:2
chr1	247835950	rs1151640	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,48:32:97:0.495:2	0/1:22,30:32:52:0.577:2	0/1:2,8:32:10:0.800:2	./.	0/1:94,5:32:100:0.051:2	0/1:61,56:32:117:0.479:2	./.	./.	0/1:0,108:33:108:1.00:2	0/1:34,47:32:81:0.580:2	0/1:52,48:32:100:0.480:2
chr1	247836008	rs28555391	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,46:31:112:0.411:2	0/1:40,26:30:66:0.394:2	0/1:11,4:31:15:0.267:2	0/1:2,129:30:131:0.985:2	0/1:4,113:29:117:0.966:2	./.	0/1:121,73:29:194:0.376:2	0/1:2,175:30:177:0.989:2	./.	0/1:64,53:30:117:0.453:2	0/1:86,77:31:163:0.472:2
chr1	247836207	rs28711149	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,35:32:78:0.449:2	0/1:20,25:31:45:0.556:2	0/1:9,6:30:15:0.400:2	0/1:0,96:30:96:1.00:2	0/1:1,71:30:72:0.986:2	./.	0/1:38,43:31:81:0.531:2	0/1:2,106:31:108:0.981:2	./.	0/1:29,24:30:53:0.453:2	0/1:53,53:31:106:0.500:2
chr1	247875277	rs368539145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:31:42:0.143:2	./.	./.	./.	./.
chr1	247875338	rs376931741	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,5:34:93:0.054:2	./.	./.
chr1	247875415	rs2282316	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	0/1:43,46:32:89:0.517:2	./.	./.	./.	./.	0/1:33,33:33:66:0.500:2
chr1	247875583	rs6665599	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:26:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247875608	rs6587382	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:35,14:31:49:0.286:2
chr1	247875689	rs7512807	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:32:9:0.889:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,16:33:55:0.291:2
chr1	247886949	rs36075193	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:82,50:31:132:0.379:2	0/1:30,19:31:49:0.388:2	./.	./.	./.	./.	./.	0/1:97,103:32:200:0.515:2	./.	./.	./.
chr1	247887002	rs11204577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,59:31:112:0.527:2	./.	./.	./.	./.	./.
chr1	247901953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.
chr1	247902489	rs199713291	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,100:30:191:0.526:2	0/1:103,85:29:188:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247921100	rs1552812	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:28:78:1.00:2	0/1:0,53:28:53:1.00:2	0/1:7,4:27:11:0.364:2	0/1:1,94:28:95:0.989:2	0/1:0,75:28:75:1.00:2	0/1:63,40:28:103:0.388:2	0/1:2,84:27:86:0.977:2	0/1:0,80:28:80:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,60:29:60:1.00:2	0/1:53,52:28:105:0.495:2
chr1	247921352	rs1552813	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,70:31:70:1.00:2	0/1:2,41:31:43:0.953:2	0/1:29,43:31:72:0.597:2	0/1:0,52:32:52:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,72:32:73:0.986:2
chr1	247978135	rs12734733	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:28:61:0.459:2	./.	./.	./.	./.	./.	0/1:22,13:29:35:0.371:2	./.
chr1	247978190	rs200354047	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.	./.
chr1	247978319	rs6695283	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:33:105:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,126:33:126:1.00:2
chr1	247978518	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2	./.	./.
chr1	247978544	rs113112592	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr1	247978996	rs10888249	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,3:33:6:0.500:2	./.	./.	0/1:0,8:33:8:1.00:2	0/1:1,2:35:3:0.667:2	0/1:0,8:32:8:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,4:31:4:1.00:2	./.	0/1:0,5:33:5:1.00:2
chr1	248004296	rs6681483	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,75:33:150:0.500:2	0/1:60,37:33:97:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248004614	rs6667389	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,35:33:72:0.486:2	0/1:32,18:32:50:0.360:2	0/1:0,19:33:19:1.00:2	0/1:2,87:33:89:0.978:2	0/1:0,55:32:55:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,76:32:76:1.00:2	0/1:1,99:32:100:0.990:2	0/1:0,101:33:101:1.00:2	0/1:2,71:33:73:0.973:2	0/1:0,96:32:96:1.00:2
chr1	248004687	rs10888255	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,10:32:26:0.385:2	0/1:4,11:31:15:0.733:2	0/1:0,3:32:3:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,23:31:23:1.00:2
chr1	248004775	rs10888256	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,18:29:46:0.391:2	0/1:16,24:31:40:0.600:2	0/1:0,10:28:10:1.00:2	0/1:1,57:30:58:0.983:2	0/1:1,51:29:52:0.981:2	0/1:0,74:30:75:1.00:2	0/1:1,90:30:91:0.989:2	0/1:0,93:30:93:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,55:30:55:1.00:2
chr1	248004784	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.
chr1	248004848	rs4607924	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,20:32:49:0.408:2	0/1:30,24:32:54:0.444:2	0/1:0,7:31:7:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,97:32:97:1.00:2	0/1:1,77:32:78:0.987:2	0/1:0,100:32:100:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,66:32:66:1.00:2
chr1	248004876	rs140921021	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,15:29:46:0.326:2	./.	./.	./.	./.	./.	./.	./.
chr1	248004877	rs10888257	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,32:32:67:0.485:2	0/1:29,25:32:54:0.463:2	0/1:0,6:31:6:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,98:31:98:1.00:2	0/1:2,88:32:90:0.978:2	0/1:0,106:32:106:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,59:32:59:1.00:2
chr1	248004884	rs1339845	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,31:32:67:0.463:2	0/1:31,25:32:56:0.446:2	0/1:0,6:32:6:1.00:2	0/1:0,53:32:53:1.00:2	0/1:2,107:31:109:0.982:2	0/1:0,106:31:106:1.00:2	0/1:2,89:31:91:0.978:2	0/1:0,108:32:109:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,60:31:61:1.00:2
chr1	248020556	rs11204523	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:4,3:30:7:0.429:2	./.	0/1:0,5:33:5:1.00:2	./.	0/1:0,2:34:2:1.00:2	./.
chr1	248023966	rs3737277	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,75:31:75:1.00:2	./.	0/1:0,91:31:91:1.00:2	./.	0/1:49,49:31:98:0.500:2	./.	0/1:33,45:33:78:0.577:2	0/1:0,78:32:78:1.00:2
chr1	248028219	rs946696	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,10:32:14:0.714:2	0/1:5,4:32:9:0.444:2	0/1:0,6:29:6:1.00:2	./.	0/1:0,15:32:15:1.00:2	./.	0/1:2,12:33:14:0.857:2	0/1:10,6:32:16:0.375:2	0/1:6,4:33:10:0.400:2	0/1:4,9:30:13:0.692:2	./.
chr1	248039451	rs3811444	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,66:31:124:0.532:2	./.	0/1:54,71:31:125:0.568:2	0/1:80,68:32:148:0.459:2	0/1:65,68:33:133:0.511:2	0/1:42,61:32:103:0.592:2	./.
chr1	248039713	rs3811445	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,64:31:130:0.492:2	0/1:36,25:29:61:0.410:2	./.	0/1:56,74:31:130:0.569:2	0/1:54,48:30:102:0.471:2	0/1:47,49:30:96:0.510:2	0/1:62,48:31:110:0.436:2	0/1:70,53:31:123:0.431:2	./.	0/1:0,102:31:102:1.00:2	0/1:82,66:31:148:0.446:2
chr1	248058935	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.
chr1	248059423	rs10888267	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,84:31:180:0.467:2	0/1:75,51:31:126:0.405:2	./.	0/1:111,86:30:197:0.437:2	0/1:84,101:31:185:0.546:2	0/1:97,92:30:189:0.487:2	0/1:79,103:31:182:0.566:2	0/1:2,178:31:180:0.989:2	0/1:109,68:31:177:0.384:2	./.	0/1:94,96:31:191:0.505:2
chr1	248059456	rs12135078	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:104,76:32:180:0.422:2	0/1:96,83:32:179:0.464:2	0/1:23,23:31:46:0.500:2	./.	0/1:0,172:32:172:1.00:2	0/1:99,92:32:191:0.482:2	0/1:93,93:32:186:0.500:2	0/1:3,183:32:186:0.984:2	0/1:1,173:32:174:0.994:2	./.	./.
chr1	248059476	rs12139390	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,75:29:177:0.426:2	0/1:99,89:29:188:0.473:2	0/1:26,29:29:55:0.527:2	0/1:114,76:30:190:0.400:2	0/1:0,176:30:176:1.00:2	0/1:99,89:30:188:0.473:2	0/1:2,171:30:173:0.988:2	0/1:2,176:30:178:0.989:2	0/1:0,166:31:167:1.00:2	0/1:95,95:30:190:0.500:2	0/1:105,79:30:184:0.429:2
chr1	248059703	rs11204545	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,64:32:145:0.441:2	0/1:60,41:33:101:0.406:2	0/1:11,12:31:23:0.522:2	0/1:87,85:32:172:0.494:2	0/1:2,137:31:139:0.986:2	0/1:88,82:32:170:0.482:2	0/1:98,73:32:171:0.427:2	0/1:0,143:32:143:1.00:2	0/1:2,148:33:150:0.987:2	./.	0/1:103,59:32:162:0.364:2
chr1	248059712	rs11204546	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,55:28:130:0.423:2	0/1:55,37:28:92:0.402:2	0/1:9,11:29:20:0.550:2	0/1:84,89:29:174:0.514:2	0/1:2,118:28:120:0.983:2	0/1:85,80:29:165:0.485:2	0/1:99,63:28:162:0.389:2	0/1:0,135:28:135:1.00:2	0/1:1,137:29:138:0.993:2	./.	0/1:96,57:27:153:0.373:2
chr1	248084434	rs11204563	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,128:31:166:0.771:2	0/1:26,123:32:149:0.826:2	0/1:10,36:31:46:0.783:2	0/1:58,111:31:169:0.657:2	0/1:48,124:30:172:0.721:2	0/1:60,117:30:177:0.661:2	0/1:105,83:30:188:0.441:2	0/1:46,140:31:186:0.753:2	0/1:38,152:32:190:0.800:2	0/1:145,28:31:173:0.162:2	0/1:66,107:31:174:0.618:2
chr1	248084440	rs111379878	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:164,7:28:171:0.041:2	0/1:143,12:32:155:0.077:2	./.	./.	0/1:169,23:32:193:0.120:2	0/1:163,16:32:179:0.089:2	0/1:181,12:30:193:0.062:2	0/1:176,15:32:191:0.079:2	./.	./.	./.
chr1	248084464	rs11204564	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,114:29:154:0.745:2	0/1:45,114:29:159:0.717:2	0/1:13,25:29:38:0.658:2	0/1:25,128:30:153:0.837:2	0/1:80,107:29:187:0.572:2	0/1:83,88:29:171:0.515:2	0/1:87,103:29:191:0.542:2	0/1:56,124:29:180:0.689:2	0/1:28,153:29:181:0.845:2	0/1:2,157:29:160:0.987:2	0/1:43,123:29:166:0.741:2
chr1	248084511	rs41315864	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:138,39:31:177:0.220:2	0/1:131,55:33:186:0.296:2	0/1:27,17:33:44:0.386:2	0/1:152,31:33:183:0.169:2	0/1:159,36:33:195:0.185:2	0/1:106,70:33:176:0.398:2	0/1:99,87:33:186:0.468:2	0/1:172,22:31:194:0.113:2	./.	0/1:17,112:33:129:0.868:2	0/1:133,41:33:174:0.236:2
chr1	248084524	rs28575687	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:32:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	0/1:178,8:31:186:0.043:2
chr1	248084579	rs144850929	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,19:30:96:0.198:2	0/1:51,13:31:64:0.203:2	./.	0/1:96,12:30:108:0.111:2	0/1:115,16:30:131:0.122:2	0/1:82,26:29:108:0.241:2	0/1:79,20:30:99:0.202:2	0/1:89,6:31:95:0.063:2	./.	./.	0/1:79,10:30:89:0.112:2
chr1	248084609	rs140703773	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,23:32:24:1.00:2	./.	0/1:1,32:29:33:0.970:2	0/1:0,46:31:47:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,47:31:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,28:32:29:0.966:2	0/1:0,19:28:19:1.00:2	0/1:0,26:31:26:1.00:2
chr1	248084625	rs6692365	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:33:24:0.417:2	./.	./.	0/1:11,8:29:19:0.421:2	0/1:20,13:31:33:0.394:2	0/1:19,7:32:26:0.269:2	0/1:22,7:31:29:0.241:2	0/1:16,11:31:27:0.407:2	0/1:9,7:31:16:0.438:2	0/1:17,6:29:23:0.261:2	0/1:10,7:32:17:0.412:2
chr1	248084627	rs61857490	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,9:28:24:0.375:2	./.	./.	0/1:13,8:24:21:0.381:2	0/1:21,13:29:34:0.382:2	0/1:19,7:31:26:0.269:2	0/1:24,8:30:32:0.250:2	0/1:18,11:29:29:0.379:2	0/1:9,8:30:17:0.471:2	0/1:17,6:30:23:0.261:2	0/1:13,7:32:20:0.350:2
chr1	248084629	rs201244365	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,5:31:31:0.161:2	0/1:13,4:32:17:0.235:2	./.	./.	0/1:27,11:32:38:0.289:2	0/1:25,9:30:34:0.265:2	0/1:31,14:27:46:0.311:2	0/1:36,8:32:44:0.182:2	./.	./.	./.
chr1	248084631	rs28689982	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,25:30:34:0.735:2	0/1:6,12:32:18:0.667:2	./.	0/1:11,21:32:32:0.656:2	0/1:15,25:31:41:0.625:2	0/1:10,26:31:36:0.722:2	0/1:17,31:31:48:0.646:2	0/1:16,30:32:46:0.652:2	0/1:8,15:32:23:0.652:2	0/1:14,14:32:28:0.500:2	0/1:15,13:31:28:0.464:2
chr1	248084747	rs4523549	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:1,15:29:16:0.938:2	0/1:0,11:33:11:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,8:34:8:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,10:32:10:1.00:2
chr1	248084749	rs12142488	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,14:30:14:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,12:32:12:1.00:2
chr1	248084798	rs74575364	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,39:31:74:0.527:2	0/1:21,29:31:50:0.580:2	0/1:4,3:30:7:0.429:2	0/1:44,30:31:74:0.405:2	0/1:40,57:30:97:0.588:2	0/1:39,56:30:95:0.589:2	0/1:79,55:30:135:0.410:2	0/1:37,47:31:84:0.560:2	./.	0/1:70,54:30:125:0.435:2	0/1:39,35:31:74:0.473:2
chr1	248084825	rs61857492	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,99:29:133:0.744:2	0/1:23,75:30:99:0.765:2	0/1:4,8:30:12:0.667:2	0/1:51,100:30:151:0.662:2	0/1:38,157:29:195:0.805:2	0/1:42,153:29:195:0.785:2	0/1:102,97:30:199:0.487:2	0/1:45,104:30:149:0.698:2	./.	0/1:95,102:30:197:0.518:2	0/1:43,91:30:134:0.679:2
chr1	248084854	rs4584426	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:174,13:30:189:0.070:2	0/1:130,10:30:140:0.071:2	./.	0/1:165,21:31:187:0.113:2	0/1:184,7:32:192:0.037:2	0/1:180,13:31:193:0.067:2	0/1:191,6:32:197:0.030:2	0/1:176,16:31:192:0.083:2	0/1:102,19:33:121:0.157:2	0/1:184,6:29:190:0.032:2	0/1:168,17:28:186:0.092:2
chr1	248084909	rs34508376	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,31:32:177:0.175:2	0/1:163,30:31:193:0.155:2	0/1:53,17:33:70:0.243:2	0/1:159,27:33:186:0.145:2	0/1:164,31:31:195:0.159:2	0/1:149,42:32:191:0.220:2	0/1:179,17:33:196:0.087:2	0/1:154,40:32:194:0.206:2	0/1:159,34:33:193:0.176:2	0/1:176,19:31:195:0.097:2	0/1:151,38:33:189:0.201:2
chr1	248084980	rs4362017	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,62:32:191:0.325:2	0/1:132,42:32:174:0.241:2	0/1:38,8:32:46:0.174:2	0/1:121,72:32:193:0.373:2	0/1:102,64:32:166:0.386:2	0/1:123,52:32:175:0.297:2	0/1:170,27:33:197:0.137:2	0/1:100,87:32:187:0.465:2	0/1:101,93:32:194:0.479:2	0/1:149,34:33:183:0.186:2	0/1:115,71:33:186:0.382:2
chr1	248084993	rs138101961	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,19:32:197:0.096:2	./.	./.
chr1	248085011	rs4595394	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,57:31:177:0.322:2	./.	./.	0/1:95,76:31:171:0.444:2	./.
chr1	248085077	rs141587311	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.
chr1	248085108	rs4625315	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,106:30:121:0.876:2	0/1:3,67:31:70:0.957:2	0/1:1,18:29:19:0.947:2	0/1:12,120:30:132:0.909:2	0/1:29,80:30:109:0.734:2	0/1:57,102:29:160:0.642:2	0/1:152,32:30:184:0.174:2	0/1:26,146:29:172:0.849:2	0/1:33,118:30:151:0.781:2	0/1:114,44:30:158:0.278:2	0/1:27,139:30:166:0.837:2
chr1	248085124	rs4590708	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,105:31:179:0.587:2	./.	./.	0/1:60,93:32:153:0.608:2	./.
chr1	248097829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.
chr1	248112285	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,6:31:187:0.032:2	./.	./.	./.	./.
chr1	248112315	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr1	248112335	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2
chr1	248112345	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:32:197:0.030:2
chr1	248112420	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.
chr1	248112546	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,17:32:195:0.087:2	0/1:186,13:31:199:0.065:2	./.	./.	./.	./.	./.	./.
chr1	248112554	rs202165563	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,22:33:194:0.113:2	0/1:183,15:31:198:0.076:2	./.	./.	./.	./.	./.	./.
chr1	248112627	rs4925787	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,78:28:169:0.462:2	0/1:51,52:28:103:0.505:2	0/1:19,18:30:37:0.486:2	0/1:59,132:29:191:0.691:2	0/1:69,121:29:190:0.637:2	0/1:100,93:29:193:0.482:2	0/1:104,90:29:194:0.464:2	0/1:5,182:29:187:0.973:2	0/1:0,160:30:160:1.00:2	0/1:86,92:28:178:0.517:2	0/1:96,84:28:181:0.467:2
chr1	248112745	rs4925788	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,36:31:43:0.837:2	0/1:3,22:32:25:0.880:2	0/1:9,5:31:14:0.357:2	0/1:50,19:31:70:0.275:2	0/1:52,18:30:70:0.257:2	0/1:3,35:31:38:0.921:2	0/1:6,32:32:38:0.842:2	0/1:1,41:31:42:0.976:2	0/1:2,31:32:33:0.939:2	0/1:1,32:30:33:0.970:2	0/1:7,45:31:52:0.865:2
chr1	248112754	rs201126494	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:32:9:0.556:2	0/1:16,44:31:60:0.733:2	0/1:14,45:31:59:0.763:2	./.	./.	./.	./.	./.	0/1:35,6:31:42:0.146:2
chr1	248112762	rs4925789	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.	./.	./.	./.	0/1:2,3:25:5:0.600:2	0/1:7,4:26:11:0.364:2	0/1:0,4:25:4:1.00:2	0/1:2,7:30:9:0.778:2	0/1:1,4:26:5:0.800:2	0/1:6,5:19:11:0.455:2
chr1	248112763	rs4925790	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	0/1:7,3:25:10:0.300:2	0/1:1,3:32:4:0.750:2	0/1:2,6:29:8:0.750:2	0/1:2,3:31:5:0.600:2	0/1:5,4:20:10:0.444:2
chr1	248112771	rs4925791	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,14:31:16:0.875:2	0/1:5,10:33:15:0.667:2	./.	0/1:41,27:30:68:0.397:2	0/1:35,12:32:47:0.255:2	0/1:2,19:31:21:0.905:2	0/1:7,9:32:16:0.563:2	0/1:0,13:32:13:1.00:2	0/1:2,11:32:13:0.846:2	0/1:0,21:32:21:1.00:2	0/1:5,23:30:28:0.821:2
chr1	248112794	rs200574966	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,18:31:90:0.200:2	0/1:57,17:30:74:0.230:2	./.	./.	./.	./.	./.	./.
chr1	248112809	rs4925583	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:2,47:32:49:0.959:2	0/1:1,8:32:9:0.889:2	0/1:15,87:32:102:0.853:2	0/1:11,76:32:87:0.874:2	0/1:1,92:32:93:0.989:2	0/1:4,53:33:57:0.930:2	0/1:0,82:32:82:1.00:2	0/1:3,91:33:94:0.968:2	0/1:0,81:32:81:1.00:2	0/1:1,89:32:90:0.989:2
chr1	248112815	rs141732349	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,5:33:98:0.051:2	./.	./.	./.	./.	./.	./.
chr1	248112836	rs4925792	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:30:114:1.00:2	0/1:2,75:29:77:0.974:2	0/1:0,10:28:10:1.00:2	0/1:6,136:30:143:0.958:2	0/1:2,123:29:125:0.984:2	0/1:0,136:29:136:1.00:2	0/1:4,86:30:90:0.956:2	0/1:0,128:29:128:1.00:2	0/1:1,133:30:134:0.993:2	0/1:1,132:30:133:0.992:2	0/1:0,130:30:130:1.00:2
chr1	248112915	rs10888280	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:102,72:30:177:0.414:2	0/1:61,51:29:113:0.455:2	0/1:20,8:28:28:0.286:2	./.	./.	0/1:98,90:30:188:0.479:2	0/1:114,77:29:191:0.403:2	./.	./.	0/1:98,77:30:175:0.440:2	0/1:99,86:30:186:0.465:2
chr1	248113026	rs10888281	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:32:56:0.982:2	0/1:2,32:31:34:0.941:2	0/1:0,5:30:5:1.00:2	0/1:1,67:30:68:0.985:2	0/1:2,55:30:58:0.965:2	./.	0/1:3,38:31:41:0.927:2	0/1:1,72:31:73:0.986:2	0/1:0,63:32:63:1.00:2	0/1:0,63:31:63:1.00:2	0/1:2,67:31:70:0.971:2
chr1	248113040	rs10888282	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,50:33:52:0.962:2	0/1:2,27:31:29:0.931:2	0/1:0,7:33:7:1.00:2	0/1:1,55:32:56:0.982:2	0/1:2,41:32:43:0.953:2	0/1:2,56:31:58:0.966:2	0/1:2,34:32:36:0.944:2	0/1:0,59:32:59:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,42:32:42:1.00:2	0/1:3,57:32:60:0.950:2
chr1	248128929	rs6664332	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:84,67:31:151:0.444:2	0/1:49,32:32:81:0.395:2	0/1:5,11:31:16:0.688:2	./.	./.	0/1:74,51:31:125:0.408:2	0/1:76,43:31:119:0.361:2	./.	./.	0/1:62,38:31:100:0.380:2	0/1:73,55:31:128:0.430:2
chr1	248129240	rs4478844	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,85:32:186:0.457:2	0/1:81,52:32:133:0.391:2	0/1:11,16:30:27:0.593:2	0/1:6,180:31:186:0.968:2	0/1:115,69:31:185:0.375:2	0/1:82,88:31:170:0.518:2	0/1:102,85:31:187:0.455:2	0/1:1,176:31:177:0.994:2	0/1:0,170:32:170:1.00:2	0/1:103,74:32:177:0.418:2	0/1:87,102:32:189:0.540:2
chr1	248129551	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.
chr1	248185343	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.
chr1	248185883	rs55982561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,75:31:180:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr1	248186154	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:33:39:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248186167	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:32:62:0.081:2	./.
chr1	248202344	rs6658141	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:32:15:0.667:2	0/1:58,53:33:112:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr1	248202474	rs144950416	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:29:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248224099	rs6666048	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,13:31:30:0.433:2	0/1:97,97:33:194:0.500:2	0/1:94,43:32:137:0.314:2	./.	./.	./.	./.	./.	./.
chr1	248224159	rs112851157	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	./.	./.	./.	./.	./.
chr1	248224166	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,6:31:185:0.032:2	./.	./.	./.	./.	./.	./.
chr1	248224169	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,6:33:196:0.031:2	./.	./.	./.	0/1:187,7:33:194:0.036:2	./.	./.	./.
chr1	248224216	rs6658227	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:32:20:0.400:2	0/1:123,73:33:196:0.372:2	0/1:92,83:32:175:0.474:2	./.	./.	./.	./.	./.	./.
chr1	248224294	rs6658256	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,8:32:29:0.276:2	0/1:123,69:32:192:0.359:2	0/1:97,52:32:150:0.349:2	./.	./.	./.	./.	./.	./.
chr1	248224398	rs55937620	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,5:29:192:0.026:2	0/1:143,4:32:147:0.027:2	0/1:14,11:30:25:0.440:2	0/1:124,66:33:190:0.347:2	0/1:114,65:32:179:0.363:2	0/1:191,4:32:195:0.021:2	0/1:186,7:30:193:0.036:2	./.	./.	./.	./.
chr1	248224451	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:175,7:26:183:0.038:2	0/1:139,6:31:145:0.041:2	./.	0/1:168,18:32:187:0.097:2	0/1:145,12:30:157:0.076:2	0/1:188,6:33:194:0.031:2	0/1:189,8:32:198:0.041:2	0/1:184,13:30:197:0.066:2	0/1:174,15:28:189:0.079:2	./.	./.
chr1	248224489	rs56834114	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:172,21:26:194:0.109:2	0/1:140,12:28:152:0.079:2	0/1:7,3:26:10:0.300:2	0/1:133,60:28:193:0.311:2	0/1:112,38:27:150:0.253:2	0/1:171,25:26:196:0.128:2	0/1:169,16:27:187:0.086:2	0/1:178,21:25:199:0.106:2	0/1:177,18:27:196:0.092:2	0/1:181,16:27:197:0.081:2	0/1:176,13:25:189:0.069:2
chr1	248224569	rs75239130	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:154,31:31:186:0.168:2	0/1:147,39:32:186:0.210:2	0/1:15,13:31:28:0.464:2	0/1:132,43:31:175:0.246:2	0/1:129,55:31:184:0.299:2	0/1:161,31:31:192:0.161:2	0/1:163,29:30:192:0.151:2	0/1:164,22:31:186:0.118:2	0/1:164,21:32:185:0.114:2	0/1:154,30:31:184:0.163:2	0/1:153,26:32:180:0.145:2
chr1	248224578	rs60743763	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,7:33:175:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	248224586	rs60429598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,7:31:174:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	248224587	rs61525219	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,7:28:174:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	248224595	rs76336532	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,22:32:180:0.122:2	0/1:149,28:32:177:0.158:2	0/1:18,12:32:30:0.400:2	0/1:143,29:32:172:0.169:2	0/1:141,32:31:173:0.185:2	0/1:164,23:31:187:0.123:2	0/1:168,14:31:182:0.077:2	0/1:169,17:32:186:0.091:2	0/1:164,16:33:180:0.089:2	0/1:153,23:30:176:0.131:2	0/1:158,18:32:176:0.102:2
chr1	248224618	rs113050484	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:175,4:32:179:0.022:2	0/1:153,9:32:162:0.056:2	0/1:18,4:32:22:0.182:2	./.	0/1:150,7:30:157:0.045:2	0/1:173,8:33:181:0.044:2	0/1:182,7:29:189:0.037:2	0/1:177,8:34:185:0.043:2	./.	0/1:171,9:32:180:0.050:2	0/1:172,4:33:176:0.023:2
chr1	248224739	rs113420317	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:136,4:32:141:0.029:2	0/1:21,3:31:24:0.125:2	./.	./.	./.	0/1:186,6:27:192:0.031:2	./.	./.	0/1:175,4:32:179:0.022:2	./.
chr1	248224746	rs6697812	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.	0/1:125,63:33:188:0.335:2	./.	./.
chr1	248224754	rs55893924	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,9:32:23:0.391:2	0/1:121,65:33:186:0.349:2	0/1:113,64:32:177:0.362:2	./.	0/1:176,5:32:182:0.028:2	./.	./.	./.	./.
chr1	248264018	rs10749643	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,53:31:54:1.00:2	0/1:6,5:31:11:0.455:2	0/1:61,84:32:145:0.579:2	0/1:46,34:31:80:0.425:2	0/1:0,99:31:99:1.00:2	0/1:1,82:32:83:0.988:2	0/1:0,108:31:108:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,107:32:107:1.00:2
chr1	248308630	rs369511295	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:34:195:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	248308910	rs374700206	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:177:0.023:2	./.	./.	./.	./.
chr1	248308916	rs115506798	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:33:172:0.029:2	./.	./.	./.	./.
chr1	248309020	rs139290187	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.	0/1:150,22:30:172:0.128:2	0/1:172,16:31:188:0.085:2	0/1:143,15:31:158:0.095:2	./.	./.	./.	0/1:189,6:31:196:0.031:2
chr1	248309038	rs200416647	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.
chr1	248309148	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248309301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.
chr1	248309356	rs73141283	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:34:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248343543	rs9435919	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,166:32:171:0.971:2	0/1:2,118:32:120:0.983:2	0/1:1,18:31:19:0.947:2	0/1:5,170:32:175:0.971:2	0/1:5,172:31:177:0.972:2	0/1:76,93:32:169:0.550:2	0/1:7,176:32:183:0.962:2	0/1:5,157:32:163:0.969:2	0/1:89,96:32:185:0.519:2	0/1:4,167:32:171:0.977:2	0/1:100,91:32:191:0.476:2
chr1	248343762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:29:193:0.026:2	./.
chr1	248343790	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:30:195:0.026:2	./.
chr1	248343791	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.
chr1	248343827	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:190,7:32:197:0.036:2	0/1:179,4:32:183:0.022:2	./.	./.	0/1:169,5:33:175:0.029:2	./.	0/1:184,5:32:189:0.026:2	./.	./.	0/1:189,6:33:195:0.031:2	./.
chr1	248343858	rs373123723	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.
chr1	248343945	rs4244171	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,153:33:154:0.994:2	0/1:1,105:32:106:0.991:2	0/1:2,25:32:27:0.926:2	0/1:3,146:32:149:0.980:2	0/1:6,106:32:112:0.946:2	0/1:132,54:32:186:0.290:2	0/1:6,87:32:93:0.935:2	0/1:10,165:32:176:0.943:2	0/1:116,72:33:189:0.383:2	0/1:2,130:33:132:0.985:2	0/1:130,57:33:188:0.305:2
chr1	248343990	rs4916104	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:29:141:1.00:2	0/1:0,79:30:79:1.00:2	0/1:1,16:29:17:0.941:2	0/1:0,134:29:134:1.00:2	0/1:1,110:30:111:0.991:2	0/1:151,45:30:196:0.230:2	0/1:6,98:30:104:0.942:2	0/1:5,157:30:162:0.969:2	0/1:110,58:30:168:0.345:2	0/1:3,134:30:137:0.978:2	0/1:119,56:29:175:0.320:2
chr1	248344032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.
chr1	248366625	rs201750460	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	./.	./.	./.	./.	0/1:186,4:32:191:0.021:2	./.	./.	./.
chr1	248366702	rs4916112	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,95:32:170:0.559:2	0/1:46,79:31:125:0.632:2	0/1:0,24:31:24:1.00:2	0/1:4,183:31:187:0.979:2	0/1:3,144:31:147:0.980:2	0/1:87,102:31:189:0.540:2	0/1:2,154:31:156:0.987:2	0/1:1,184:31:185:0.995:2	0/1:91,97:32:188:0.516:2	0/1:4,179:31:183:0.978:2	0/1:96,86:31:182:0.473:2
chr1	248366792	rs12562957	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,84:30:182:0.462:2	0/1:96,77:29:173:0.445:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248367105	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:31:176:0.028:2	./.
chr1	248402707	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,5:32:167:0.030:2
chr1	248402758	rs6666148	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,171:31:172:0.994:2	0/1:0,89:31:89:1.00:2	0/1:0,16:31:16:1.00:2	0/1:84,66:31:150:0.440:2	0/1:0,105:31:105:1.00:2	0/1:97,60:30:157:0.382:2	0/1:3,111:31:114:0.974:2	0/1:4,125:31:129:0.969:2	./.	0/1:1,132:31:134:0.992:2	0/1:100,94:32:194:0.485:2
chr1	248436313	rs111541774	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,41:27:191:0.215:2	0/1:155,39:27:194:0.201:2	0/1:47,14:28:61:0.230:2	0/1:145,55:28:200:0.275:2	0/1:134,61:27:195:0.313:2	0/1:132,64:28:196:0.327:2	0/1:174,24:28:198:0.121:2	0/1:145,50:28:195:0.256:2	0/1:150,44:30:194:0.227:2	0/1:165,29:27:194:0.149:2	0/1:147,44:28:192:0.230:2
chr1	248436359	rs113574656	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,5:32:176:0.028:2	./.	./.	./.	./.	./.	./.
chr1	248436425	rs137877266	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,33:33:195:0.169:2	./.	./.	0/1:164,34:33:198:0.172:2	./.
chr1	248436443	rs138973935	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,34:32:199:0.171:2	./.	./.
chr1	248436456	rs142107755	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,61:32:193:0.316:2	0/1:129,63:32:192:0.328:2	0/1:58,8:32:67:0.121:2	0/1:143,55:32:198:0.278:2	0/1:122,72:32:194:0.371:2	0/1:136,53:32:189:0.280:2	0/1:173,26:32:199:0.131:2	0/1:134,66:32:200:0.330:2	0/1:132,68:33:200:0.340:2	0/1:165,32:32:197:0.162:2	0/1:124,56:32:180:0.311:2
chr1	248436527	rs142669752	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:138,47:31:185:0.254:2	0/1:124,45:32:169:0.266:2	0/1:82,23:32:105:0.219:2	0/1:159,30:33:189:0.159:2	0/1:157,36:31:193:0.187:2	0/1:154,37:31:191:0.194:2	0/1:174,20:32:194:0.103:2	0/1:160,38:32:198:0.192:2	0/1:164,27:33:191:0.141:2	0/1:162,21:31:183:0.115:2	0/1:151,43:33:194:0.222:2
chr1	248436567	rs367564950	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248436582	rs200806453	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,18:32:159:0.118:2	0/1:96,11:33:107:0.103:2	./.	0/1:182,12:34:194:0.062:2	0/1:139,7:28:148:0.048:2	0/1:167,15:33:184:0.082:2	0/1:145,6:32:151:0.040:2	0/1:151,4:32:155:0.026:2	0/1:153,9:29:162:0.056:2	0/1:121,6:32:128:0.047:2	0/1:163,7:33:170:0.041:2
chr1	248436611	rs10888338	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,132:29:158:0.835:2	0/1:11,80:30:91:0.879:2	0/1:38,12:27:50:0.240:2	0/1:126,58:28:184:0.315:2	0/1:42,139:28:182:0.768:2	0/1:23,145:29:168:0.863:2	0/1:26,134:29:160:0.838:2	0/1:140,49:29:189:0.259:2	./.	0/1:21,123:29:144:0.854:2	0/1:131,60:30:191:0.314:2
chr1	248436616	rs71538179	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,163:28:165:0.988:2	0/1:0,95:28:95:1.00:2	0/1:36,16:28:52:0.308:2	0/1:99,87:28:186:0.468:2	0/1:4,182:27:187:0.978:2	0/1:1,170:28:171:0.994:2	0/1:6,153:28:159:0.962:2	0/1:104,89:28:193:0.461:2	0/1:171,22:29:193:0.114:2	0/1:0,148:29:148:1.00:2	0/1:106,81:29:187:0.433:2
chr1	248436638	rs200877558	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,41:31:191:0.215:2	0/1:126,40:32:166:0.241:2	0/1:40,13:33:53:0.245:2	0/1:144,53:33:197:0.269:2	0/1:140,55:31:195:0.282:2	0/1:162,35:31:197:0.178:2	0/1:166,28:31:195:0.144:2	0/1:144,50:32:194:0.258:2	0/1:149,41:33:192:0.216:2	0/1:158,37:30:195:0.190:2	0/1:153,40:32:193:0.207:2
chr1	248436655	rs140771747	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248436721	rs74363422	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,5:32:112:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248436805	rs28399248	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,151:32:154:0.981:2	0/1:8,152:31:160:0.950:2	0/1:34,41:32:75:0.547:2	0/1:59,103:32:162:0.636:2	0/1:7,149:32:156:0.955:2	0/1:8,158:31:166:0.952:2	0/1:56,122:32:178:0.685:2	0/1:77,80:32:157:0.510:2	0/1:117,45:32:162:0.278:2	0/1:38,124:32:162:0.765:2	0/1:60,106:31:166:0.639:2
chr1	248436807	rs377005013	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,7:22:165:0.043:2	./.	./.	0/1:154,7:27:163:0.043:2	0/1:163,8:28:172:0.047:2	0/1:169,7:32:178:0.040:2	./.	./.	./.	./.
chr1	248436809	rs61832700	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,41:32:146:0.281:2	0/1:110,54:30:164:0.329:2	0/1:54,17:31:71:0.239:2	0/1:122,45:30:167:0.269:2	0/1:121,48:30:170:0.284:2	0/1:123,51:31:174:0.293:2	0/1:159,23:30:182:0.126:2	0/1:122,39:29:161:0.242:2	0/1:120,43:30:163:0.264:2	0/1:151,30:31:181:0.166:2	0/1:117,50:30:167:0.299:2
chr1	248436811	rs61832701	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,42:32:152:0.276:2	0/1:111,53:32:165:0.323:2	0/1:55,17:32:72:0.236:2	0/1:125,46:31:171:0.269:2	0/1:121,48:31:169:0.284:2	0/1:124,51:31:175:0.291:2	0/1:158,23:31:181:0.127:2	0/1:123,37:31:160:0.231:2	0/1:118,43:32:161:0.267:2	0/1:149,30:32:179:0.168:2	0/1:120,49:30:170:0.290:2
chr1	248436912	rs201497316	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,12:27:192:0.063:2	0/1:166,21:27:187:0.112:2	0/1:61,7:28:68:0.103:2	0/1:180,11:25:191:0.058:2	0/1:168,20:27:188:0.106:2	0/1:176,17:27:194:0.088:2	0/1:176,20:27:196:0.102:2	0/1:170,18:27:188:0.096:2	0/1:168,20:28:188:0.106:2	0/1:184,9:25:193:0.047:2	0/1:174,15:28:189:0.079:2
chr1	248436925	rs146015658	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:184,7:32:191:0.037:2	./.	./.	./.	0/1:187,7:31:194:0.036:2	0/1:190,8:34:198:0.040:2	./.	./.	0/1:185,6:33:191:0.031:2	0/1:190,4:33:194:0.021:2
chr1	248436972	rs112084843	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,96:30:185:0.519:2	0/1:90,93:29:184:0.508:2	0/1:44,11:29:55:0.200:2	0/1:96,84:30:181:0.467:2	0/1:171,17:30:190:0.090:2	0/1:179,12:30:191:0.063:2	0/1:162,29:31:192:0.152:2	0/1:176,20:30:196:0.102:2	0/1:171,22:30:193:0.114:2	0/1:2,158:30:160:0.988:2	0/1:172,24:29:196:0.122:2
chr1	248437002	rs146010336	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:168,21:30:189:0.111:2	0/1:169,23:31:192:0.120:2	0/1:44,12:31:56:0.214:2	0/1:176,20:30:196:0.102:2	0/1:174,20:31:194:0.103:2	0/1:181,12:31:193:0.062:2	0/1:180,15:31:195:0.077:2	0/1:165,21:30:186:0.113:2	0/1:164,19:32:183:0.104:2	0/1:187,6:31:193:0.031:2	0/1:168,22:31:191:0.116:2
chr1	248437087	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2
chr1	248457979	rs6667171	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,177:33:177:1.00:2	0/1:0,93:32:93:1.00:2	0/1:10,10:32:20:0.500:2	0/1:88,94:32:182:0.516:2	0/1:0,147:32:147:1.00:2	0/1:2,193:32:195:0.990:2	0/1:4,178:33:182:0.978:2	0/1:92,95:33:187:0.508:2	./.	0/1:3,188:32:191:0.984:2	0/1:108,84:33:192:0.438:2
chr1	248457993	rs11204625	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,80:29:168:0.476:2	./.	./.	./.	./.	./.	0/1:2,176:29:178:0.989:2	./.
chr1	248458074	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458123	rs140090926	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:32:194:0.052:2	./.	./.
chr1	248458207	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.
chr1	248458291	rs146564081	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	./.
chr1	248458419	rs142654576	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,20:32:182:0.110:2	./.	./.	./.	./.	./.
chr1	248458443	rs141434381	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,7:29:58:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458444	rs141694594	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,7:31:58:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458446	rs377135127	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	./.	./.	0/1:191,6:30:197:0.030:2	./.
chr1	248458485	rs199772508	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,6:30:54:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458569	rs35216356	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,37:32:153:0.242:2	0/1:78,50:32:128:0.391:2	0/1:42,8:29:50:0.160:2	0/1:124,43:32:168:0.257:2	0/1:100,74:31:175:0.425:2	0/1:103,62:32:165:0.376:2	0/1:129,51:31:180:0.283:2	0/1:128,49:31:177:0.277:2	0/1:145,33:31:179:0.185:2	0/1:98,53:31:151:0.351:2	0/1:132,30:31:162:0.185:2
chr1	248458571	rs12137982	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,56:32:154:0.364:2	0/1:98,30:32:128:0.234:2	0/1:33,16:30:49:0.327:2	./.	0/1:81,96:32:177:0.542:2	0/1:62,98:31:160:0.613:2	0/1:67,110:31:177:0.621:2	0/1:130,46:32:177:0.261:2	./.	./.	0/1:124,39:33:164:0.239:2
chr1	248458573	rs34901845	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,29:31:155:0.187:2	0/1:99,30:32:129:0.233:2	0/1:42,7:31:49:0.143:2	0/1:128,35:31:163:0.215:2	0/1:146,35:31:181:0.193:2	0/1:119,45:31:164:0.274:2	0/1:156,29:31:185:0.157:2	0/1:135,40:30:175:0.229:2	0/1:148,26:30:174:0.149:2	0/1:105,42:31:147:0.286:2	0/1:142,26:31:169:0.155:2
chr1	248458575	rs36100041	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,29:31:160:0.181:2	0/1:102,30:32:132:0.227:2	0/1:40,7:28:47:0.149:2	0/1:127,35:32:163:0.216:2	0/1:146,36:32:182:0.198:2	0/1:121,45:32:166:0.271:2	0/1:152,29:32:181:0.160:2	0/1:137,40:31:177:0.226:2	0/1:146,26:32:172:0.151:2	0/1:103,43:31:146:0.295:2	0/1:145,25:29:171:0.147:2
chr1	248458676	rs6678138	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,138:30:139:0.993:2	0/1:1,105:30:106:0.991:2	./.	0/1:175,16:29:191:0.084:2	0/1:2,101:30:103:0.981:2	0/1:4,100:31:104:0.962:2	0/1:2,57:31:59:0.966:2	0/1:163,33:31:196:0.168:2	./.	0/1:0,29:31:29:1.00:2	0/1:156,30:30:186:0.161:2
chr1	248458689	rs6674940	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,159:32:161:0.994:2	0/1:2,131:33:133:0.985:2	0/1:41,7:33:48:0.146:2	0/1:178,8:30:186:0.043:2	0/1:19,117:33:136:0.860:2	0/1:4,128:32:132:0.970:2	0/1:4,75:33:79:0.949:2	0/1:166,30:33:196:0.153:2	./.	0/1:0,24:33:24:1.00:2	0/1:152,35:31:187:0.187:2
chr1	248458717	rs12745228	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,69:28:170:0.406:2	0/1:105,66:29:171:0.386:2	0/1:40,9:29:49:0.184:2	0/1:151,22:29:173:0.127:2	0/1:2,173:29:175:0.989:2	0/1:4,173:28:177:0.977:2	0/1:3,144:29:147:0.980:2	0/1:120,57:30:177:0.322:2	./.	0/1:0,76:29:76:1.00:2	0/1:133,51:27:184:0.277:2
chr1	248458718	rs79635253	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,96:28:168:0.578:2	0/1:68,101:29:169:0.598:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458736	rs28409263	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,42:30:183:0.230:2	./.	./.	0/1:178,5:28:183:0.027:2	./.	./.	0/1:0,110:30:110:1.00:2	./.
chr1	248458760	rs12135684	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,68:31:190:0.358:2	./.	./.	0/1:98,82:32:180:0.456:2	0/1:189,7:31:196:0.036:2	./.	0/1:0,143:31:143:1.00:2	./.
chr1	248487016	rs4451579	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,93:30:181:0.514:2	./.	./.	./.	./.	./.	0/1:2,167:31:169:0.988:2	./.
chr1	248487172	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:28:191:0.026:2	./.	./.
chr1	248487205	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr1	248487300	rs4916129	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,86:31:189:0.455:2	0/1:93,70:31:163:0.429:2	0/1:27,9:31:36:0.250:2	./.	0/1:5,121:30:126:0.960:2	0/1:11,177:30:188:0.941:2	0/1:8,135:30:143:0.944:2	0/1:131,62:30:193:0.321:2	./.	./.	0/1:115,79:31:194:0.407:2
chr1	248487312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,6:33:139:0.043:2	./.	./.	./.	./.	./.	./.
chr1	248487338	rs4916130	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,180:31:180:1.00:2	0/1:0,160:32:160:1.00:2	0/1:24,14:32:38:0.368:2	0/1:106,86:31:192:0.448:2	0/1:0,160:31:160:1.00:2	0/1:1,180:31:181:0.994:2	0/1:1,134:32:135:0.993:2	0/1:115,71:31:186:0.382:2	./.	0/1:1,185:31:188:0.995:2	0/1:112,75:32:187:0.401:2
chr1	248487638	rs7555310	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,168:31:176:0.960:2	0/1:11,123:32:134:0.918:2	0/1:11,11:33:22:0.500:2	0/1:93,94:31:187:0.503:2	0/1:6,177:31:183:0.967:2	0/1:2,179:32:181:0.989:2	0/1:9,176:32:185:0.951:2	0/1:109,85:32:196:0.438:2	./.	0/1:8,171:32:179:0.955:2	0/1:97,90:32:187:0.481:2
chr1	248487640	rs139110575	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:177,6:28:183:0.033:2	0/1:128,8:27:137:0.059:2	./.	./.	0/1:185,5:29:190:0.026:2	./.	0/1:185,8:30:193:0.041:2	./.	./.	0/1:179,6:27:185:0.032:2	./.
chr1	248487701	rs41304036	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,80:30:171:0.468:2
chr1	248487715	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.
chr1	248487741	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,5:30:146:0.034:2	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2
chr1	248487742	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:140,5:31:145:0.034:2	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2
chr1	248487768	rs7555424	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,159:33:162:0.981:2	0/1:2,98:32:100:0.980:2	0/1:12,9:31:21:0.429:2	0/1:94,91:33:185:0.492:2	0/1:8,113:32:121:0.934:2	0/1:8,181:32:189:0.958:2	0/1:2,149:33:151:0.987:2	0/1:95,89:32:184:0.484:2	./.	0/1:2,173:32:175:0.989:2	0/1:82,83:33:165:0.503:2
chr1	248487811	rs142511770	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,5:33:91:0.055:2	0/1:148,5:34:153:0.033:2	./.	./.	./.	./.	./.
chr1	248512094	rs28728105	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,106:33:108:0.981:2	0/1:0,65:33:65:1.00:2	0/1:11,9:32:20:0.450:2	./.	0/1:1,101:32:102:0.990:2	0/1:2,124:32:126:0.984:2	0/1:1,106:33:107:0.991:2	0/1:77,53:33:130:0.408:2	./.	./.	0/1:94,68:33:162:0.420:2
chr1	248512498	rs28448343	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,56:30:120:0.467:2	./.	./.	./.	./.	./.	0/1:1,85:30:86:0.988:2	./.
chr1	248512637	rs2039824	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,189:32:190:0.995:2	0/1:2,120:31:122:0.984:2	0/1:11,7:32:18:0.389:2	./.	0/1:2,172:31:174:0.989:2	0/1:6,183:31:189:0.968:2	0/1:3,178:31:181:0.983:2	0/1:120,77:31:197:0.391:2	./.	./.	0/1:102,94:32:196:0.480:2
chr1	248512749	rs28377739	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,186:33:187:0.995:2	0/1:1,166:32:167:0.994:2	0/1:19,10:32:29:0.345:2	./.	0/1:1,192:32:193:0.995:2	0/1:6,179:32:185:0.968:2	0/1:1,178:33:179:0.994:2	0/1:103,90:32:193:0.466:2	./.	./.	0/1:107,80:32:187:0.428:2
chr1	248512767	rs28545014	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,184:30:185:0.995:2	0/1:1,140:31:141:0.993:2	0/1:19,6:31:25:0.240:2	./.	0/1:2,178:30:180:0.989:2	0/1:7,172:30:179:0.961:2	0/1:0,182:30:183:1.00:2	0/1:105,89:30:196:0.459:2	./.	./.	0/1:105,78:31:183:0.426:2
chr1	248524992	rs45552134	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:29:4:0.750:2	./.
chr1	248525021	rs45438195	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:21:6:0.833:2	./.
chr1	248525053	rs28415565	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:27:10:0.600:2	./.
chr1	248525060	rs28491677	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,12:30:145:0.083:2	./.	./.	./.	./.	./.	0/1:4,14:26:18:0.778:2	./.
chr1	248525071	rs28499298	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,22:33:144:0.153:2	./.	./.	./.	./.	./.	0/1:4,39:33:43:0.907:2	./.
chr1	248525100	rs73146195	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:136,29:32:166:0.176:2	0/1:145,36:32:181:0.199:2	./.	0/1:146,36:31:182:0.198:2	./.	0/1:175,18:30:193:0.093:2	./.	0/1:161,31:32:192:0.161:2	./.	./.	0/1:180,9:33:189:0.048:2
chr1	248525135	rs76721536	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:115,55:30:170:0.324:2	0/1:120,62:31:183:0.341:2	./.	0/1:127,56:31:183:0.306:2	./.	0/1:155,33:31:188:0.176:2	./.	0/1:153,40:31:193:0.207:2	./.	./.	0/1:167,17:30:184:0.092:2
chr1	248525138	rs75096121	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:127,44:30:171:0.257:2	0/1:121,60:32:181:0.331:2	./.	0/1:128,55:31:183:0.301:2	./.	0/1:154,27:30:181:0.149:2	./.	0/1:156,38:29:194:0.196:2	./.	./.	0/1:166,16:30:182:0.088:2
chr1	248525146	rs28482938	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,46:28:185:0.249:2	./.	./.	./.	./.	./.	0/1:7,185:30:192:0.964:2	./.
chr1	248525193	rs28655275	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,37:31:194:0.191:2	./.	./.	./.	./.	./.	0/1:9,167:31:177:0.949:2	./.
chr1	248525285	rs28637620	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:190,4:33:194:0.021:2	./.	0/1:135,31:33:166:0.187:2	./.	./.	./.	./.	./.	0/1:6,56:31:62:0.903:2	./.
chr1	248525290	rs202028348	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,7:28:146:0.048:2	./.	./.	./.	./.	./.	0/1:5,27:29:32:0.844:2	./.
chr1	248525291	rs28540568	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,7:30:146:0.048:2	./.	./.	./.	./.	./.	0/1:5,29:31:34:0.853:2	./.
chr1	248525308	rs201411128	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:179,5:32:184:0.027:2	0/1:184,9:31:193:0.047:2	./.	./.	0/1:192,7:31:199:0.035:2	./.	./.	./.	./.	./.	./.
chr1	248525329	rs376643959	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,12:28:178:0.067:2	./.	./.	./.	./.	./.	0/1:87,20:28:107:0.187:2	./.
chr1	248525330	rs56721857	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,31:27:178:0.174:2	./.	./.	./.	./.	./.	0/1:29,78:29:107:0.729:2	./.
chr1	248525647	rs28405645	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,70:29:192:0.365:2	./.	./.	./.	./.	./.	0/1:10,123:30:133:0.925:2	./.
chr1	248525650	rs28602650	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,68:30:195:0.349:2	./.	./.	./.	./.	./.	0/1:12,124:30:136:0.912:2	./.
chr1	248525651	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,7:26:187:0.037:2	./.	./.	0/1:189,6:27:195:0.031:2	0/1:187,9:28:196:0.046:2	./.	./.
chr1	248525657	rs28718027	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:186,8:32:194:0.041:2	0/1:184,11:33:195:0.056:2	./.	0/1:112,80:32:192:0.417:2	0/1:181,9:31:191:0.047:2	0/1:189,10:30:199:0.050:2	0/1:189,8:33:197:0.041:2	0/1:191,8:32:199:0.040:2	0/1:188,7:32:195:0.036:2	0/1:4,166:33:170:0.976:2	0/1:183,8:31:192:0.042:2
chr1	248525673	rs111303378	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,7:31:191:0.037:2	0/1:187,10:30:197:0.051:2	./.	./.	./.	0/1:192,5:29:197:0.025:2	./.	./.	./.	./.	./.
chr1	248525744	rs150378421	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:32:192:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248525780	rs28698997	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,85:32:194:0.438:2	./.	./.	./.	./.	./.	0/1:2,186:32:188:0.989:2	./.
chr1	248525827	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.	./.	./.	./.	./.
chr1	248525831	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,6:34:188:0.032:2	./.	./.	0/1:160,5:32:165:0.030:2	0/1:173,9:33:182:0.049:2	./.	0/1:184,6:33:190:0.032:2	0/1:187,4:36:191:0.021:2	./.	./.
chr1	248525896	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:131,5:31:136:0.037:2	./.	./.	./.	0/1:123,9:30:132:0.068:2	./.	0/1:103,6:33:109:0.055:2	0/1:99,4:33:103:0.039:2	./.	0/1:129,4:32:133:0.030:2
chr1	248550970	rs7417616	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,21:29:57:0.368:2	./.	./.	./.	./.	./.	0/1:1,52:29:53:0.981:2	./.
chr1	248550976	rs6587467	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,44:33:69:0.638:2	0/1:14,17:32:31:0.548:2	./.	0/1:36,26:33:62:0.419:2	0/1:0,36:31:36:1.00:2	0/1:0,68:32:68:1.00:2	0/1:23,23:33:46:0.500:2	0/1:24,29:33:53:0.547:2	./.	0/1:1,60:33:61:0.984:2	0/1:0,79:33:79:1.00:2
chr1	248551203	rs6700947	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,37:29:77:0.481:2	./.	./.	./.	./.	./.	0/1:2,39:29:41:0.951:2	./.
chr1	248551560	rs954474	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,93:32:194:0.479:2	./.	./.	./.	./.	./.	0/1:1,181:32:182:0.995:2	./.
chr1	248551636	rs954475	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,92:33:195:0.472:2	./.	./.	./.	./.	./.	0/1:2,173:32:175:0.989:2	./.
chr1	248551709	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,75:31:183:0.410:2	./.
chr1	248569369	rs28599722	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,40:29:77:0.519:2	0/1:24,20:28:44:0.455:2	./.	./.	0/1:1,44:28:45:0.978:2	0/1:1,50:28:51:0.980:2	0/1:33,20:28:53:0.377:2	0/1:47,22:29:69:0.319:2	./.	./.	0/1:0,95:28:95:1.00:2
chr1	248616401	rs77680148	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:69,125:32:194:0.644:2	0/1:63,132:32:195:0.677:2	./.	0/1:122,74:31:196:0.378:2	./.	0/1:155,42:30:197:0.213:2	./.	0/1:159,39:30:198:0.197:2	./.	0/1:123,75:31:198:0.379:2	0/1:144,52:30:197:0.265:2
chr1	248616408	rs73147579	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:74,123:32:197:0.624:2	0/1:62,135:32:197:0.685:2	./.	0/1:122,75:32:197:0.381:2	./.	0/1:152,44:32:196:0.224:2	./.	0/1:159,38:32:197:0.193:2	./.	0/1:110,86:32:196:0.439:2	0/1:152,45:32:197:0.228:2
chr1	248616749	rs151176830	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:34:11:0.364:2	0/1:186,4:33:190:0.021:2
chr1	248616764	rs376553658	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.	./.	0/1:18,13:31:31:0.419:2	./.
chr1	248616883	rs143551105	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,32:32:51:0.627:2	0/1:148,44:32:192:0.229:2	0/1:90,93:31:183:0.508:2	0/1:143,47:32:190:0.247:2	0/1:102,88:32:190:0.463:2	0/1:159,35:32:195:0.180:2	0/1:106,79:33:185:0.427:2	0/1:101,85:32:186:0.457:2	0/1:111,53:32:164:0.323:2
chr1	248617028	rs78338008	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,3:32:15:0.200:2	0/1:131,9:33:140:0.064:2	0/1:80,8:30:88:0.091:2	0/1:129,9:31:138:0.065:2	0/1:96,18:31:114:0.158:2	0/1:167,9:32:176:0.051:2	0/1:88,19:32:107:0.178:2	0/1:71,12:32:83:0.145:2	0/1:75,15:33:90:0.167:2
chr1	248617050	rs76819842	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:28:131:0.038:2	0/1:103,9:28:112:0.080:2	./.	0/1:82,5:31:87:0.057:2	0/1:70,6:30:76:0.079:2	./.
chr1	248617051	rs74660299	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:29:133:0.038:2	0/1:103,9:28:112:0.080:2	./.	0/1:81,5:31:86:0.058:2	0/1:70,6:31:76:0.079:2	./.
chr1	248637046	rs148025314	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:103,79:30:182:0.434:2	0/1:116,73:30:189:0.386:2	./.	0/1:86,97:30:183:0.530:2	./.	0/1:146,40:29:186:0.215:2	./.	0/1:146,42:30:188:0.223:2	./.	0/1:65,132:31:197:0.670:2	./.
chr1	248637065	rs139758663	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:108,75:30:185:0.410:2	0/1:119,68:29:187:0.364:2	./.	0/1:143,48:31:191:0.251:2	./.	0/1:152,40:31:193:0.208:2	./.	0/1:150,42:30:192:0.219:2	./.	./.	./.
chr1	248637115	rs139558207	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,100:33:152:0.662:2	0/1:62,98:32:160:0.613:2	0/1:46,3:35:49:0.061:2	0/1:96,96:33:192:0.500:2	./.	0/1:149,38:33:187:0.203:2	./.	0/1:153,37:32:190:0.195:2	./.	0/1:88,83:32:171:0.485:2	0/1:139,35:33:177:0.201:2
chr1	248637199	rs148748995	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,21:33:150:0.140:2	0/1:89,10:32:99:0.101:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,23:31:151:0.152:2
chr1	248637256	rs79885009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.
chr1	248637262	rs1770110	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,19:27:174:0.109:2	./.	./.	0/1:92,96:30:188:0.511:2	./.	./.	./.	./.
chr1	248637291	rs1770109	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:136,43:30:182:0.240:2	0/1:88,22:30:110:0.200:2	./.	0/1:155,33:31:189:0.176:2	./.	0/1:169,11:31:180:0.061:2	./.	0/1:188,7:32:195:0.036:2	./.	0/1:1,37:32:38:0.974:2	./.
chr1	248637362	rs77686526	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:85,100:32:185:0.541:2	0/1:83,102:32:185:0.551:2	./.	0/1:101,83:32:184:0.451:2	./.	0/1:157,37:33:194:0.191:2	./.	0/1:147,50:33:197:0.254:2	./.	0/1:49,102:33:151:0.675:2	0/1:177,4:33:181:0.022:2
chr1	248637367	rs1770108	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:45,6:26:51:0.118:2	0/1:165,20:26:185:0.108:2	0/1:153,41:26:194:0.211:2	0/1:183,12:25:196:0.062:2	0/1:155,38:26:193:0.197:2	0/1:183,12:26:195:0.062:2	0/1:151,45:27:197:0.230:2	0/1:117,42:26:160:0.264:2	0/1:116,60:26:178:0.341:2
chr1	248637381	rs139789199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,47:31:195:0.241:2	./.	./.	./.	./.	./.	./.	./.
chr1	248637391	rs150934113	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,13:30:179:0.073:2	0/1:166,16:31:183:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,14:31:174:0.080:2
chr1	248637416	rs75924848	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:166,18:31:184:0.098:2	0/1:158,26:32:184:0.141:2	./.	0/1:160,34:31:194:0.175:2	./.	./.	./.	./.	./.	0/1:120,51:33:171:0.298:2	0/1:161,21:33:182:0.115:2
chr1	248637417	rs74711605	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:167,18:32:185:0.097:2	0/1:159,26:32:185:0.141:2	./.	0/1:161,32:31:193:0.166:2	./.	./.	./.	./.	./.	0/1:120,51:32:171:0.298:2	0/1:162,21:33:183:0.115:2
chr1	248637480	rs74498773	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,44:29:194:0.227:2	0/1:158,36:28:194:0.186:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,29:28:191:0.152:2
chr1	248637543	rs139993642	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:111,83:33:194:0.428:2	0/1:99,92:32:191:0.482:2	./.	0/1:114,84:33:198:0.424:2	./.	0/1:161,33:33:194:0.170:2	./.	0/1:149,48:33:197:0.244:2	./.	0/1:113,83:33:196:0.423:2	./.
chr1	248637544	rs143898659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,36:32:197:0.183:2	./.	./.	./.
chr1	248651905	rs199833498	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:165,27:33:192:0.141:2	0/1:142,51:32:193:0.264:2	./.	0/1:157,38:33:195:0.195:2	./.	0/1:170,27:32:197:0.137:2	./.	0/1:173,24:32:197:0.122:2	./.	./.	./.
chr1	248651927	rs201060805	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,38:32:188:0.202:2	0/1:138,52:32:190:0.274:2	0/1:0,56:32:56:1.00:2	0/1:96,102:33:198:0.515:2	0/1:76,107:32:183:0.585:2	0/1:0,172:32:172:1.00:2	0/1:0,184:33:184:1.00:2	0/1:97,97:33:194:0.500:2	0/1:94,97:34:191:0.508:2	0/1:0,175:32:175:1.00:2	0/1:0,181:32:181:1.00:2
chr1	248652011	rs150528589	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:93,75:32:169:0.446:2	0/1:95,48:31:143:0.336:2	./.	0/1:135,45:31:180:0.250:2	./.	0/1:158,27:31:185:0.146:2	./.	0/1:168,18:32:186:0.097:2	./.	0/1:192,7:31:199:0.035:2	./.
chr1	248652023	rs139516854	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:83,68:32:151:0.450:2	0/1:95,43:32:138:0.312:2	./.	0/1:143,32:31:175:0.183:2	./.	0/1:161,20:32:181:0.110:2	./.	0/1:174,14:31:188:0.074:2	./.	./.	./.
chr1	248652058	rs199730299	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:91,45:30:136:0.331:2	0/1:104,28:32:132:0.212:2	./.	0/1:149,18:29:167:0.108:2	./.	0/1:168,7:31:175:0.040:2	./.	0/1:169,11:31:180:0.061:2	./.	./.	0/1:176,8:30:185:0.043:2
chr1	248652061	rs200544370	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:100,46:29:146:0.315:2	0/1:103,28:31:131:0.214:2	./.	0/1:159,17:28:177:0.097:2	./.	0/1:172,6:28:179:0.034:2	./.	0/1:176,11:30:187:0.059:2	./.	./.	0/1:176,9:29:185:0.049:2
chr1	248652069	rs201157031	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,6:30:184:0.033:2	./.	./.	./.	./.	./.	0/1:187,9:31:196:0.046:2	./.
chr1	248652071	rs199723306	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:100,68:31:168:0.405:2	0/1:112,49:32:161:0.304:2	./.	0/1:144,41:32:185:0.222:2	./.	0/1:174,15:30:189:0.079:2	./.	0/1:175,16:32:191:0.084:2	./.	0/1:187,9:32:196:0.046:2	0/1:171,19:30:190:0.100:2
chr1	248652116	rs201725598	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,12:28:196:0.061:2	./.	./.	./.	./.	./.	0/1:185,11:30:196:0.056:2	./.
chr1	248652175	rs199519459	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:63,125:32:188:0.665:2	0/1:57,127:31:184:0.690:2	./.	0/1:101,97:32:198:0.490:2	./.	0/1:161,32:32:193:0.166:2	./.	0/1:167,32:31:199:0.161:2	./.	0/1:168,24:32:192:0.125:2	./.
chr1	248652231	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	./.	./.	./.	./.	0/1:166,28:33:194:0.144:2	./.
chr1	248652252	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,15:30:195:0.077:2	./.
chr1	248652350	rs200959275	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,127:32:182:0.698:2	0/1:48,145:32:193:0.751:2	./.	0/1:102,94:33:196:0.480:2	./.	0/1:150,45:31:195:0.231:2	./.	0/1:150,46:32:196:0.235:2	./.	./.	0/1:144,47:31:191:0.246:2
chr1	248652570	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:30:189:0.026:2	./.
chr1	248652573	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:27:193:0.031:2	./.
chr1	248652574	rs201387497	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,145:32:186:0.780:2	0/1:47,142:31:189:0.751:2	./.	0/1:123,72:31:195:0.369:2	./.	0/1:149,46:31:195:0.236:2	./.	0/1:163,33:29:196:0.168:2	./.	0/1:188,5:27:193:0.026:2	0/1:137,53:32:190:0.279:2
chr1	248652596	rs199639744	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,131:30:182:0.720:2	0/1:53,133:29:187:0.715:2	./.	0/1:118,75:30:193:0.389:2	./.	0/1:155,42:30:197:0.213:2	./.	0/1:166,29:29:195:0.149:2	./.	./.	0/1:148,46:28:194:0.237:2
chr1	248685143	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,6:25:191:0.031:2	./.	./.	./.	./.	./.	./.
chr1	248685253	rs9727474	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,126:29:126:1.00:2	0/1:0,77:28:77:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,133:28:133:1.00:2	0/1:0,148:28:148:1.00:2	0/1:0,143:28:144:1.00:2	0/1:0,158:28:158:1.00:2	0/1:0,133:28:133:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,141:29:141:1.00:2	0/1:0,131:28:131:1.00:2
chr1	248685543	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,13:31:195:0.067:2	./.	./.	./.	./.	./.
chr1	248685719	rs9330305	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,37:32:63:0.587:2
chr1	248722086	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:59,128:30:187:0.684:2	0/1:53,133:29:186:0.715:2	./.	0/1:117,75:30:193:0.391:2	./.	0/1:158,37:29:195:0.190:2	./.	0/1:153,40:30:193:0.207:2	./.	0/1:190,6:27:196:0.031:2	0/1:160,33:29:194:0.171:2
chr1	248722108	rs201343161	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,136:31:192:0.708:2	0/1:53,137:31:190:0.721:2	./.	0/1:109,91:31:200:0.455:2	./.	0/1:152,43:31:195:0.221:2	./.	0/1:155,41:30:196:0.209:2	./.	0/1:191,5:31:196:0.026:2	0/1:164,34:31:198:0.172:2
chr1	248722332	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,140:32:189:0.741:2	0/1:54,136:32:190:0.716:2	./.	0/1:105,88:33:193:0.456:2	./.	0/1:160,35:33:195:0.179:2	./.	0/1:154,43:33:197:0.218:2	./.	./.	0/1:152,45:32:197:0.228:2
chr1	248722361	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,6:33:200:0.030:2	./.
chr1	248722430	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,7:30:196:0.036:2	./.	./.	./.	./.	./.	0/1:179,11:29:190:0.058:2	./.
chr1	248722451	rs376895464	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,21:32:195:0.108:2	./.	./.	./.	./.	./.	0/1:157,32:33:190:0.169:2	./.
chr1	248722507	rs199706827	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:65,123:31:188:0.654:2	0/1:67,122:31:189:0.646:2	./.	0/1:104,92:32:196:0.469:2	./.	0/1:166,25:32:191:0.131:2	./.	0/1:163,29:32:192:0.151:2	./.	0/1:167,28:32:195:0.144:2	./.
chr1	248722566	rs200777722	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,25:29:194:0.129:2	./.	./.	./.	./.	./.	0/1:169,27:31:196:0.138:2	./.
chr1	248722611	rs200169450	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,58:32:115:0.504:2	0/1:64,59:31:123:0.480:2	./.	0/1:128,36:31:164:0.220:2	./.	0/1:177,5:31:182:0.027:2	./.	./.	0/1:196,4:32:200:0.020:2	0/1:174,13:32:187:0.070:2	0/1:153,18:32:171:0.105:2
chr1	248722613	rs199532952	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,15:28:161:0.093:2	./.	./.	./.	./.	./.	0/1:180,12:26:192:0.063:2	./.
chr1	248722621	rs201345491	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,42:29:103:0.408:2	0/1:67,38:31:105:0.362:2	./.	0/1:140,14:28:154:0.091:2	./.	./.	./.	./.	./.	./.	0/1:153,9:29:162:0.056:2
chr1	248722624	rs200919674	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,43:29:101:0.430:2	0/1:67,37:31:104:0.356:2	./.	0/1:137,16:30:153:0.105:2	./.	./.	./.	./.	./.	./.	0/1:152,7:31:160:0.044:2
chr1	248722659	rs201896684	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,74:31:110:0.673:2	0/1:33,72:31:105:0.686:2	./.	0/1:129,23:31:152:0.151:2	./.	0/1:154,20:28:174:0.115:2	./.	0/1:158,10:31:168:0.060:2	./.	./.	0/1:115,49:32:164:0.299:2
chr1	248722671	rs140437806	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,96:31:121:0.793:2	0/1:20,103:31:123:0.837:2	./.	0/1:83,78:32:161:0.484:2	./.	0/1:150,24:31:174:0.138:2	./.	0/1:141,23:32:164:0.140:2	./.	0/1:141,47:31:188:0.250:2	0/1:122,47:32:169:0.278:2
chr1	248722722	rs199528787	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,81:31:172:0.471:2	0/1:99,77:30:176:0.438:2	0/1:0,37:30:37:1.00:2	0/1:23,151:31:174:0.868:2	0/1:3,184:30:187:0.984:2	0/1:1,184:30:185:0.995:2	0/1:4,182:30:186:0.978:2	0/1:2,175:31:177:0.989:2	0/1:0,180:31:181:1.00:2	0/1:23,153:31:176:0.869:2	0/1:103,80:30:183:0.437:2
chr1	248722739	rs200935922	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,9:29:181:0.050:2	./.	./.	./.	./.	./.	0/1:172,9:33:181:0.050:2	./.
chr1	248722777	rs77589892	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,167:33:170:0.982:2	0/1:1,175:32:176:0.994:2	./.	0/1:42,140:33:182:0.769:2	./.	0/1:145,49:32:194:0.253:2	./.	0/1:134,61:33:195:0.313:2	./.	./.	0/1:133,58:33:192:0.304:2
chr1	248737166	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,35:32:198:0.177:2	./.	./.	./.
chr1	248737167	rs148590921	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,49:33:124:0.395:2	0/1:51,26:32:77:0.338:2	./.	0/1:104,94:33:198:0.475:2	./.	0/1:155,45:32:200:0.225:2	./.	0/1:149,49:32:198:0.247:2	./.	0/1:105,83:33:188:0.441:2	./.
chr1	248737230	rs199863869	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,34:29:93:0.366:2	0/1:26,26:30:52:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,22:31:123:0.179:2
chr1	248737259	rs189248971	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:26:43:1.00:2	0/1:0,21:26:21:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,85:27:85:1.00:2	0/1:0,63:27:64:1.00:2	0/1:0,46:26:46:1.00:2	0/1:0,116:27:116:1.00:2	0/1:0,63:26:63:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,89:28:90:1.00:2	0/1:0,97:27:98:1.00:2
chr1	248737293	rs200427293	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,4:30:53:0.077:2	./.	./.	0/1:143,13:32:156:0.083:2	./.	./.	./.	./.	./.	0/1:164,11:32:175:0.063:2	./.
chr1	248737294	rs201475070	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,13:33:157:0.083:2	./.	./.	./.	./.	./.	0/1:170,11:34:181:0.061:2	./.
chr1	248737319	rs77940099	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:30:77:0.364:2	0/1:31,25:32:56:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,25:31:147:0.171:2
chr1	248737329	rs75095367	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,135:31:179:0.754:2	./.	./.	./.	./.	./.	./.	./.
chr1	248737343	rs61833441	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,56:31:113:0.496:2	0/1:54,34:31:88:0.386:2	./.	0/1:144,38:31:182:0.209:2	./.	0/1:110,38:31:148:0.257:2	./.	0/1:120,31:29:151:0.205:2	./.	0/1:166,15:31:181:0.083:2	./.
chr1	248737348	rs61833442	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,118:32:120:0.983:2	0/1:0,94:32:94:1.00:2	./.	0/1:142,40:32:182:0.220:2	./.	0/1:119,42:33:161:0.261:2	./.	0/1:129,36:31:165:0.218:2	./.	0/1:163,15:33:178:0.084:2	0/1:120,39:31:159:0.245:2
chr1	248737454	rs79750523	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,46:30:192:0.240:2	./.	./.	0/1:169,6:27:175:0.034:2	./.	./.	./.	./.
chr1	248737511	rs150608839	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,44:32:194:0.227:2	0/1:100,41:32:141:0.291:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,54:32:194:0.280:2
chr1	248737595	rs150601708	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,130:32:169:0.769:2	0/1:30,106:32:136:0.779:2	./.	0/1:118,74:33:192:0.385:2	./.	0/1:168,24:33:192:0.125:2	./.	0/1:162,35:33:197:0.178:2	0/1:195,4:33:199:0.020:2	0/1:121,71:33:192:0.370:2	0/1:160,32:33:192:0.167:2
chr1	248737645	rs143071665	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:85,81:28:166:0.488:2	0/1:66,53:28:119:0.445:2	./.	0/1:160,29:28:189:0.153:2	./.	0/1:170,24:30:194:0.124:2	./.	0/1:150,31:29:182:0.171:2	./.	./.	./.
chr1	248737664	rs147489167	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:67,62:30:129:0.481:2	0/1:48,36:30:85:0.429:2	./.	0/1:126,45:29:171:0.263:2	./.	0/1:169,21:30:190:0.111:2	./.	0/1:158,19:30:177:0.107:2	./.	0/1:151,42:30:193:0.218:2	./.
chr1	248737734	rs139616012	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:25:9:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248756502	rs41269353	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248789504	rs1892442	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,2:28:2:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,24:29:24:1.00:2	0/1:2,109:31:111:0.982:2	0/1:1,173:30:174:0.994:2	0/1:0,101:30:101:1.00:2	0/1:0,193:30:193:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,187:30:187:1.00:2	0/1:0,189:30:189:1.00:2
chr1	248789753	rs28555577	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,70:29:157:0.446:2	./.	./.	./.	./.	./.	./.
chr1	248790075	rs1892443	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:29:3:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,78:30:78:1.00:2	0/1:1,42:29:43:0.977:2	0/1:0,49:30:49:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,59:29:59:1.00:2
chr1	248790167	rs34397542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,21:32:70:0.300:2	./.	./.	./.	./.	./.	./.
chr1	248790199	rs34674180	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,31:33:82:0.378:2	./.	./.	./.	./.	./.	./.
chr1	248801610	rs150878651	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,5:31:28:0.179:2	0/1:12,7:26:19:0.368:2	0/1:40,5:31:45:0.111:2	0/1:10,4:32:14:0.286:2	0/1:37,5:28:42:0.119:2	0/1:16,8:32:24:0.333:2	0/1:27,10:29:37:0.270:2	0/1:18,7:30:25:0.280:2
chr1	248801611	rs143981271	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,5:28:28:0.179:2	0/1:14,6:28:20:0.300:2	0/1:41,5:30:46:0.109:2	0/1:12,4:29:16:0.250:2	0/1:37,5:29:42:0.119:2	0/1:16,8:30:24:0.333:2	0/1:27,10:27:37:0.270:2	0/1:21,7:30:28:0.250:2
chr1	248801633	rs74901534	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,13:31:53:0.245:2	0/1:21,10:33:31:0.323:2	0/1:55,12:32:67:0.179:2	0/1:27,16:30:43:0.372:2	0/1:47,13:32:60:0.217:2	0/1:29,22:33:51:0.431:2	0/1:35,22:31:58:0.386:2	0/1:37,19:31:56:0.339:2
chr1	248801778	rs201643849	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,4:31:174:0.023:2	./.	0/1:16,14:32:30:0.467:2	0/1:126,64:31:190:0.337:2	0/1:72,119:32:191:0.623:2	0/1:133,54:32:187:0.289:2	0/1:56,128:32:184:0.696:2	0/1:123,54:32:177:0.305:2	0/1:71,97:33:168:0.577:2	0/1:108,80:32:189:0.426:2	0/1:67,102:32:169:0.604:2
chr1	248801897	rs79303917	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,87:31:196:0.444:2	./.	./.	./.	./.	./.	0/1:102,93:31:195:0.477:2	./.
chr1	248801912	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248801950	rs200737338	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,19:33:64:0.297:2
chr1	248802257	rs145908089	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:2,6:30:8:0.750:2	0/1:54,4:33:58:0.069:2	0/1:1,2:32:3:0.667:2	./.	0/1:36,6:32:42:0.143:2
chr1	248802469	rs199678335	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,4:32:5:1.00:2	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	0/1:1,4:29:5:0.800:2	0/1:1,7:28:8:0.875:2
chr1	248813271	rs2802081	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:0,10:33:10:1.00:2	./.	./.	0/1:100,37:32:138:0.270:2	0/1:83,34:31:117:0.291:2	0/1:170,24:31:194:0.124:2	0/1:103,31:31:134:0.231:2	0/1:169,27:32:196:0.138:2	./.	0/1:158,24:32:182:0.132:2
chr1	248813280	rs116125618	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,48:31:140:0.343:2	./.	./.	./.	./.	./.	./.
chr1	248813292	rs71199329	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	0/1:0,4:27:4:1.00:2	./.	./.	./.	0/1:92,17:29:109:0.156:2	0/1:181,15:29:196:0.077:2	0/1:124,10:28:134:0.075:2	0/1:177,9:26:186:0.048:2	./.	0/1:169,10:28:179:0.056:2
chr1	248813343	rs1938148	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:6:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.	0/1:178,12:31:190:0.063:2	0/1:117,6:34:123:0.049:2	0/1:185,7:29:192:0.036:2	./.	./.	./.	0/1:180,5:33:185:0.027:2
chr1	248813483	rs151290740	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	0/1:1,3:27:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248813542	rs77685347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,73:32:90:0.811:2	./.	./.	./.	./.	./.	./.
chr1	248813547	rs201161767	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,4:32:7:0.667:2	0/1:1,2:33:3:0.667:2	./.	0/1:0,9:34:10:1.00:2	0/1:79,14:32:93:0.151:2	0/1:0,14:33:14:1.00:2	0/1:1,15:33:16:0.938:2	0/1:3,10:33:13:0.769:2	0/1:0,14:33:14:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,25:31:25:1.00:2
chr1	248813601	rs144939744	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,13:32:75:0.173:2	0/1:35,9:32:45:0.205:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248813695	rs139620204	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:107,16:31:123:0.130:2	0/1:70,12:30:82:0.146:2	./.	0/1:152,31:30:183:0.169:2	./.	./.	./.	./.	./.	./.	./.
chr1	248813723	rs138825902	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:92,9:30:101:0.089:2	0/1:51,6:31:57:0.105:2	./.	./.	0/1:113,66:29:179:0.369:2	./.	./.	./.	./.	./.	./.
chr1	248813785	rs200036975	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:5,62:30:68:0.925:2	0/1:3,41:31:44:0.932:2	0/1:20,10:30:30:0.333:2	./.	./.	0/1:90,99:30:189:0.524:2	./.	0/1:100,76:30:176:0.432:2	./.	./.	0/1:119,62:31:182:0.343:2
chr1	248813827	rs1782241	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,5:27:118:0.042:2	./.	0/1:16,8:33:24:0.333:2	0/1:2,90:32:92:0.978:2	0/1:144,45:31:189:0.238:2	0/1:167,27:32:194:0.139:2	0/1:9,123:32:134:0.932:2	0/1:150,45:30:195:0.231:2	0/1:8,97:32:105:0.924:2	0/1:0,121:31:121:1.00:2	0/1:143,48:31:191:0.251:2
chr1	248813901	rs144600224	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,60:33:142:0.423:2	0/1:49,35:32:84:0.417:2	0/1:15,12:32:27:0.444:2	0/1:23,110:32:133:0.827:2	0/1:23,154:32:177:0.870:2	0/1:59,126:32:185:0.681:2	0/1:40,131:32:171:0.766:2	0/1:20,130:32:150:0.867:2	0/1:23,105:33:128:0.820:2	0/1:1,132:33:133:0.992:2	0/1:143,41:32:184:0.223:2
chr1	248813972	rs147604785	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,34:32:157:0.217:2	./.	0/1:131,37:32:168:0.220:2	./.	0/1:157,27:33:184:0.147:2	./.	./.
chr1	248814052	rs28533004	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,43:31:123:0.350:2	0/1:22,21:32:43:0.488:2	0/1:12,8:32:20:0.400:2	0/1:63,101:31:164:0.616:2	0/1:110,66:31:176:0.375:2	0/1:62,108:31:170:0.635:2	0/1:107,73:31:180:0.406:2	0/1:73,41:31:114:0.360:2	0/1:50,118:32:168:0.702:2	0/1:0,159:31:159:1.00:2	0/1:94,69:31:163:0.423:2
chr1	248814080	rs1782242	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,162:34:162:1.00:2	0/1:0,138:33:138:1.00:2	0/1:1,147:32:148:0.993:2
chr1	248814126	rs28418327	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,35:31:69:0.507:2	0/1:6,14:32:20:0.700:2	0/1:3,14:31:17:0.824:2	0/1:31,64:31:95:0.674:2	0/1:24,74:30:98:0.755:2	0/1:63,37:30:100:0.370:2	0/1:25,57:31:82:0.695:2	0/1:38,24:30:62:0.387:2	0/1:26,77:31:103:0.748:2	0/1:0,74:31:74:1.00:2	0/1:60,46:31:106:0.434:2
chr1	248844959	rs55871516	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:31,23:32:54:0.426:2	./.	0/1:17,20:33:37:0.541:2	./.	0/1:28,22:33:50:0.440:2	./.	./.	./.
chr1	248845097	rs2000390	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,20:31:22:0.909:2	0/1:60,41:31:101:0.406:2	0/1:1,172:31:174:0.994:2	0/1:67,64:30:131:0.489:2	0/1:1,174:31:175:0.994:2	0/1:85,79:31:164:0.482:2	0/1:0,100:31:100:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,114:31:114:1.00:2
chr1	248845356	rs41311583	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,139:32:142:0.986:2	0/1:0,102:32:103:1.00:2	./.	0/1:98,100:31:199:0.505:2	./.	0/1:90,105:31:195:0.538:2	./.	0/1:82,113:31:195:0.579:2	./.	./.	./.
chr1	248845411	rs11485825	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:33:30:1.00:2	0/1:94,72:32:166:0.434:2	0/1:1,168:32:169:0.994:2	0/1:110,70:33:180:0.389:2	0/1:0,162:32:162:1.00:2	0/1:113,59:33:172:0.343:2	0/1:0,163:34:163:1.00:2	0/1:0,157:33:157:1.00:2	0/1:0,173:33:173:1.00:2
chr1	248845458	rs4509608	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:31:22:1.00:2	0/1:74,58:32:132:0.439:2	0/1:1,108:32:109:0.991:2	0/1:81,50:31:131:0.382:2	0/1:0,102:32:102:1.00:2	0/1:101,67:32:168:0.399:2	0/1:0,118:33:118:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,142:32:142:1.00:2
chr1	248845471	rs4575113	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:28:113:1.00:2	0/1:0,80:28:80:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,121:28:121:1.00:2	0/1:0,89:28:89:1.00:2	0/1:0,123:28:123:1.00:2	0/1:0,96:28:96:1.00:2	0/1:3,145:28:148:0.980:2	0/1:0,109:29:109:1.00:2	0/1:0,84:28:84:1.00:2	0/1:0,113:27:113:1.00:2
chr1	248845499	rs4462184	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,66:30:66:1.00:2	0/1:1,9:31:10:0.900:2	0/1:0,95:31:95:1.00:2	0/1:0,70:31:70:1.00:2	0/1:1,100:29:101:0.990:2	0/1:0,68:30:68:1.00:2	0/1:4,118:30:122:0.967:2	0/1:0,95:32:95:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,83:31:83:1.00:2
chr1	249142882	rs200208741	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,78:32:148:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr1	249143646	rs2511	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,41:31:100:0.410:2	0/1:30,24:31:54:0.444:2	./.	0/1:56,47:30:103:0.456:2	./.	./.	./.	./.	./.	./.	./.
chr1	249144497	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2
chr2	46043	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr2	224919	rs2290911	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:107,57:33:164:0.348:2	0/1:47,55:33:103:0.539:2	./.	0/1:86,53:33:141:0.381:2	./.	./.	./.	0/1:80,54:32:134:0.403:2	0/1:66,65:33:131:0.496:2	./.	0/1:105,53:32:158:0.335:2
chr2	242793	rs62114506	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.	./.	./.	0/1:20,12:30:32:0.375:2	0/1:18,17:33:35:0.486:2	./.	0/1:19,5:32:24:0.208:2
chr2	242800	rs10181051	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,11:32:24:0.458:2	0/1:14,7:32:21:0.333:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,18:32:18:1.00:2	./.	./.	0/1:13,16:33:29:0.552:2	0/1:19,19:34:38:0.500:2	0/1:0,23:33:23:1.00:2	./.
chr2	243504	rs7556816	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	0/1:0,85:30:85:1.00:2	./.	./.	0/1:83,71:30:154:0.461:2	0/1:62,33:32:95:0.347:2	0/1:1,102:31:103:0.990:2	./.
chr2	264019	rs7595075	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.
chr2	269352	rs6755722	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	0/1:0,42:32:42:1.00:2	./.	./.	0/1:59,42:32:101:0.416:2	0/1:73,53:33:126:0.421:2	0/1:3,67:32:70:0.957:2	./.
chr2	272203	rs11553746	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,79:31:158:0.503:2	0/1:73,50:31:123:0.407:2	./.	0/1:98,85:29:184:0.464:2	./.	./.	./.	0/1:103,86:29:189:0.455:2	0/1:87,81:31:168:0.482:2	./.	0/1:85,86:30:171:0.503:2
chr2	277003	rs79716074	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,16:29:50:0.320:2	0/1:17,10:28:27:0.370:2	./.	0/1:24,30:31:54:0.556:2	./.	./.	./.	0/1:16,14:29:30:0.467:2	0/1:30,34:31:64:0.531:2	./.	0/1:32,43:29:75:0.573:2
chr2	277314	rs77927634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,45:31:117:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr2	672826	rs149085075	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,50:31:97:0.515:2	./.	./.	./.
chr2	676177	rs2293083	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,16:30:16:1.00:2	0/1:5,6:32:11:0.545:2	0/1:0,53:32:53:1.00:2	./.	./.	0/1:0,50:32:50:1.00:2	./.	0/1:0,53:33:53:1.00:2	0/1:0,28:31:28:1.00:2	0/1:16,21:32:37:0.568:2
chr2	677295	rs3210390	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,26:29:38:0.684:2	0/1:0,30:28:30:1.00:2	./.	0/1:17,23:28:40:0.575:2	./.	./.	./.
chr2	905393	rs113854668	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,5:26:38:0.132:2	0/1:19,4:27:23:0.174:2	./.	0/1:13,16:30:29:0.552:2	0/1:38,8:29:46:0.174:2	./.	0/1:45,9:31:54:0.167:2	0/1:47,12:30:59:0.203:2	0/1:16,10:33:26:0.385:2	0/1:33,5:26:38:0.132:2	0/1:21,15:33:38:0.417:2
chr2	905399	rs111252196	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	0/1:15,6:33:21:0.286:2	./.	0/1:22,8:29:30:0.267:2
chr2	905427	rs113411033	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:29:29:0.172:2	./.	./.	./.	./.	./.	./.	0/1:16,3:34:19:0.158:2
chr2	905428	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,4:26:50:0.080:2	./.	./.	./.	./.	./.	./.
chr2	905442	rs62103942	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,4:29:25:0.160:2	0/1:42,5:26:47:0.106:2	./.	0/1:40,5:30:45:0.111:2	0/1:37,9:30:46:0.196:2	./.	./.	0/1:12,4:29:17:0.250:2
chr2	905483	rs113678061	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:28:68:0.059:2	./.	0/1:47,6:32:53:0.113:2	./.	./.	./.	./.
chr2	905492	rs62103943	T	G,A	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:BQ:DP:FA:SS	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	0/1:26:21:0.278:2	./.	./.	./.	0/2:29:24:0.300:2	./.	./.	0/1:26:13:0.308:2	./.	./.
chr2	905494	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,17:26:58:0.293:2	0/1:19,3:30:22:0.136:2	./.	0/1:32,10:27:42:0.238:2	0/1:50,20:23:70:0.286:2	0/1:18,6:25:24:0.250:2	0/1:52,13:26:65:0.200:2	0/1:45,20:27:65:0.308:2	./.	0/1:33,12:27:46:0.267:2	./.
chr2	905495	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,14:28:56:0.250:2	0/1:20,3:29:23:0.130:2	./.	0/1:33,10:25:43:0.233:2	0/1:50,21:25:71:0.296:2	0/1:18,5:27:23:0.217:2	0/1:54,11:25:65:0.169:2	0/1:49,20:27:69:0.290:2	./.	0/1:35,12:27:47:0.255:2	./.
chr2	905497	rs111536265	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,12:27:60:0.200:2	0/1:21,4:30:25:0.160:2	./.	0/1:31,13:31:44:0.295:2	0/1:61,16:28:77:0.208:2	0/1:19,5:28:24:0.208:2	0/1:57,10:29:67:0.149:2	0/1:67,8:28:75:0.107:2	0/1:10,4:30:14:0.286:2	0/1:42,6:30:48:0.125:2	0/1:15,9:25:24:0.375:2
chr2	905525	rs111963287	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,9:30:67:0.134:2	0/1:28,6:32:34:0.176:2	./.	0/1:52,10:30:62:0.161:2	0/1:73,8:29:81:0.099:2	0/1:29,4:28:33:0.121:2	0/1:75,5:30:80:0.063:2	0/1:77,9:30:86:0.105:2	./.	0/1:37,12:33:49:0.245:2	0/1:15,4:28:19:0.211:2
chr2	905533	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,5:32:64:0.078:2	0/1:74,7:30:81:0.086:2	./.	./.	0/1:85,5:33:90:0.056:2	./.	./.	./.
chr2	905534	rs13385144	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,6:30:30:0.200:2	./.	0/1:84,7:34:91:0.077:2	./.	./.	./.
chr2	905536	rs200026353	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,5:30:30:0.167:2	./.	./.	./.	./.	./.
chr2	905553	rs12464357	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,9:29:85:0.106:2	./.	0/1:36,4:29:40:0.100:2	./.
chr2	905567	rs112481627	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,6:28:51:0.118:2	./.	./.	0/1:41,5:28:46:0.109:2	0/1:53,5:26:58:0.086:2	0/1:17,5:30:22:0.227:2	./.	0/1:59,9:30:68:0.132:2	./.	0/1:26,3:33:29:0.103:2	./.
chr2	905575	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.	./.	./.	./.	./.	./.
chr2	905576	rs12470098	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,10:27:46:0.227:2	0/1:18,9:24:28:0.333:2	./.	0/1:31,9:26:40:0.225:2	0/1:32,18:27:52:0.360:2	0/1:11,7:28:18:0.389:2	0/1:40,14:26:55:0.259:2	0/1:45,13:26:61:0.224:2	0/1:4,3:31:8:0.429:2	./.	0/1:5,3:27:8:0.375:2
chr2	905581	rs113738897	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,27:30:44:0.614:2	0/1:18,10:25:28:0.357:2	./.	0/1:20,23:27:43:0.535:2	0/1:29,21:27:50:0.420:2	0/1:16,4:29:20:0.200:2	0/1:21,32:27:53:0.604:2	0/1:36,32:28:68:0.471:2	0/1:6,3:33:9:0.333:2	0/1:11,16:31:27:0.593:2	./.
chr2	905595	rs28716017	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,6:28:48:0.125:2	./.	./.	0/1:34,5:27:39:0.128:2	0/1:39,4:32:43:0.093:2	0/1:16,3:28:19:0.158:2	0/1:43,7:33:50:0.140:2	0/1:65,4:34:69:0.058:2	./.	./.	./.
chr2	905620	rs200190444	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:27:44:0.091:2	./.	./.	./.
chr2	905634	rs13400348	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,19:30:28:0.679:2	0/1:3,7:32:10:0.700:2	./.	0/1:4,13:32:17:0.765:2	0/1:4,10:32:14:0.714:2	0/1:2,3:34:5:0.600:2	0/1:5,13:32:18:0.722:2	0/1:5,23:31:28:0.821:2	0/1:1,4:30:5:0.800:2	0/1:2,4:31:6:0.667:2	./.
chr2	905637	rs200485054	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	./.	./.	./.
chr2	905651	rs113734895	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,3:30:27:0.111:2	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.	./.	./.
chr2	905660	rs112574570	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:33:47:0.064:2	./.	./.	./.
chr2	905679	rs112299659	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,8:26:37:0.216:2	0/1:19,3:31:22:0.136:2	./.	./.	./.	./.	./.	0/1:42,5:31:47:0.106:2	./.	./.	./.
chr2	905687	rs13395348	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,32:30:33:0.970:2	0/1:0,21:30:21:1.00:2	./.	0/1:2,16:31:18:0.889:2	0/1:0,25:30:25:1.00:2	0/1:0,7:29:7:1.00:2	0/1:2,29:30:31:0.935:2	0/1:1,41:31:42:0.976:2	0/1:1,4:28:5:0.800:2	0/1:4,9:31:13:0.692:2	0/1:1,3:31:4:0.750:2
chr2	905693	rs74861779	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:29:23:0.304:2	./.	./.	./.	0/1:50,8:32:58:0.138:2	0/1:4,3:27:7:0.429:2	./.	./.
chr2	905721	rs71337695	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,3:33:58:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	905736	rs11891241	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,38:29:62:0.623:2	0/1:15,16:30:31:0.516:2	./.	0/1:19,28:29:47:0.596:2	0/1:22,38:29:61:0.633:2	0/1:8,14:28:22:0.636:2	0/1:32,51:29:83:0.614:2	0/1:41,36:29:77:0.468:2	0/1:2,6:29:8:0.750:2	0/1:17,9:30:26:0.346:2	0/1:7,7:27:14:0.500:2
chr2	905763	rs71337696	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,23:28:66:0.348:2	0/1:30,9:25:39:0.231:2	./.	0/1:43,12:28:56:0.218:2	0/1:67,13:29:80:0.163:2	0/1:17,9:28:26:0.346:2	0/1:69,20:23:89:0.225:2	0/1:60,10:24:70:0.143:2	./.	./.	./.
chr2	905777	rs71337697	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,8:26:65:0.123:2	0/1:31,6:23:37:0.162:2	./.	0/1:48,8:30:56:0.143:2	0/1:62,9:32:71:0.127:2	0/1:18,7:30:25:0.280:2	0/1:85,8:31:93:0.086:2	0/1:63,5:27:68:0.074:2	./.	./.	0/1:12,5:21:17:0.294:2
chr2	905785	rs111308021	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,7:31:71:0.099:2	./.	./.	./.	./.	./.	./.
chr2	905786	rs111964853	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,9:31:59:0.158:2	./.	./.	0/1:46,4:27:51:0.080:2	0/1:58,7:31:65:0.108:2	0/1:19,3:31:22:0.136:2	0/1:72,11:31:83:0.133:2	0/1:43,11:31:54:0.204:2	./.	./.	./.
chr2	905788	rs368624435	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,10:28:57:0.175:2	0/1:22,5:22:27:0.185:2	./.	./.	0/1:55,7:30:63:0.113:2	0/1:19,3:31:23:0.136:2	0/1:66,13:27:80:0.165:2	0/1:38,11:30:49:0.224:2	./.	./.	./.
chr2	905789	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,9:27:57:0.158:2	./.	./.	./.	0/1:56,7:29:63:0.111:2	0/1:20,3:31:23:0.130:2	0/1:70,11:28:81:0.136:2	0/1:38,11:29:49:0.224:2	./.	./.	./.
chr2	905802	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,6:23:48:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	905805	rs111612803	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,6:25:46:0.130:2	./.	./.	./.	0/1:47,5:28:52:0.096:2	./.	0/1:55,6:19:61:0.098:2	./.	./.	./.	./.
chr2	905819	rs13403699	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,7:31:40:0.175:2	./.	./.	0/1:31,7:31:38:0.184:2	0/1:38,4:29:42:0.095:2	./.	0/1:40,5:26:45:0.111:2	./.	./.	./.	./.
chr2	905827	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	905837	rs369032091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:29:16:0.188:2
chr2	905844	rs6711032	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,8:33:24:0.333:2	0/1:6,6:32:12:0.500:2	./.	0/1:14,10:29:24:0.417:2	0/1:7,20:30:27:0.741:2	0/1:6,21:31:27:0.778:2	0/1:23,8:31:31:0.258:2	0/1:9,20:31:29:0.690:2	0/1:11,9:33:20:0.450:2	0/1:10,3:34:13:0.231:2	0/1:5,10:32:15:0.667:2
chr2	905872	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,6:29:21:0.286:2	./.	./.	0/1:19,4:29:23:0.174:2	./.	./.	0/1:21,4:26:25:0.160:2	0/1:24,4:25:28:0.143:2	./.	./.	./.
chr2	905873	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,6:31:22:0.273:2	./.	./.	0/1:21,4:32:25:0.160:2	./.	./.	0/1:20,4:26:24:0.167:2	0/1:25,3:32:28:0.107:2	./.	./.	./.
chr2	905889	rs62103945	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,11:28:29:0.379:2	./.	./.	0/1:26,9:32:35:0.257:2	0/1:24,5:30:29:0.172:2	0/1:31,3:32:34:0.088:2	0/1:21,10:31:31:0.323:2	0/1:26,8:31:34:0.235:2	./.	0/1:0,12:32:13:1.00:2	0/1:9,7:30:16:0.438:2
chr2	905914	rs62103946	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,7:30:36:0.194:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:26:38:0.105:2	./.	0/1:11,6:29:17:0.353:2
chr2	905931	rs10167633	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:30:26:0.346:2	0/1:13,9:29:22:0.409:2
chr2	905945	rs10184596	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.	./.	0/1:20,14:32:34:0.412:2	0/1:11,18:32:29:0.621:2
chr2	905956	rs10177046	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:32:47:0.340:2	0/1:23,20:32:43:0.465:2	0/1:15,25:31:40:0.625:2
chr2	905967	rs6711173	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:65,28:34:93:0.301:2	0/1:0,52:32:52:1.00:2	0/1:2,68:32:70:0.971:2	0/1:0,79:33:79:1.00:2	0/1:0,57:32:57:1.00:2	./.	0/1:29,28:32:57:0.491:2	./.
chr2	1079280	rs142024310	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:29:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1079320	rs4971432	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,43:31:78:0.551:2	0/1:20,20:32:40:0.500:2	0/1:0,8:29:8:1.00:2	0/1:0,84:31:85:1.00:2	0/1:1,49:31:50:0.980:2	0/1:46,41:30:87:0.471:2	0/1:1,56:31:57:0.982:2	0/1:36,52:31:88:0.591:2	0/1:38,37:32:75:0.493:2	0/1:0,54:32:54:1.00:2	0/1:1,65:31:66:0.985:2
chr2	1099077	rs4971440	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.
chr2	1133367	rs79642551	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,80:31:179:0.447:2	./.	0/1:99,71:32:170:0.418:2	./.	0/1:103,75:33:179:0.421:2	0/1:1,174:32:175:0.994:2	0/1:108,74:32:182:0.407:2
chr2	1161257	rs199527480	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:29:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr2	1168781	rs28505970	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,26:29:51:0.510:2	0/1:17,6:30:23:0.261:2	./.	./.	0/1:30,31:28:61:0.508:2	./.	./.	0/1:40,39:29:79:0.494:2	./.	./.	0/1:37,33:29:70:0.471:2
chr2	1204796	rs6751090	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:19,18:32:37:0.486:2	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	0/1:35,35:31:70:0.500:2	./.	./.	0/1:38,27:31:65:0.415:2
chr2	1271230	rs13023962	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,42:29:96:0.438:2	0/1:37,32:28:69:0.464:2	./.	0/1:83,60:29:143:0.420:2	0/1:71,57:30:128:0.445:2	0/1:75,62:29:137:0.453:2	0/1:81,74:28:155:0.477:2	0/1:0,149:29:149:1.00:2	0/1:78,52:30:130:0.400:2	0/1:67,55:29:122:0.451:2	0/1:0,131:29:131:1.00:2
chr2	1320143	rs4927635	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:32:22:1.00:2	0/1:29,25:32:54:0.463:2	0/1:0,64:31:64:1.00:2	0/1:22,14:32:36:0.389:2	0/1:2,63:32:65:0.969:2	0/1:36,30:32:66:0.455:2	./.	0/1:33,26:32:59:0.441:2
chr2	1418192	rs9678281	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:33:21:0.619:2	0/1:52,50:33:102:0.490:2	0/1:50,35:32:85:0.412:2	0/1:65,49:31:114:0.430:2	0/1:55,63:33:118:0.534:2	0/1:79,57:32:136:0.419:2	./.	0/1:46,34:31:80:0.425:2	0/1:0,92:33:92:1.00:2
chr2	1460004	rs4927611	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,22:31:69:0.319:2	0/1:2,72:31:74:0.973:2	0/1:46,32:31:78:0.410:2	0/1:34,31:31:65:0.477:2	0/1:33,26:31:59:0.441:2	0/1:32,35:31:67:0.522:2
chr2	1497657	rs10189135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:32:113:0.354:2	./.	./.	./.
chr2	1497803	rs1126797	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,30:32:60:0.500:2	0/1:25,14:32:39:0.359:2	./.	./.	0/1:60,30:31:90:0.333:2	0/1:39,40:30:79:0.506:2	./.	./.	0/1:40,45:32:85:0.529:2	0/1:37,33:31:70:0.471:2	./.
chr2	1499870	rs13431173	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,26:30:77:0.338:2	./.	./.	./.
chr2	1499899	rs732608	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,19:33:42:0.452:2	0/1:14,13:33:27:0.481:2	./.	./.	0/1:22,28:32:50:0.560:2	0/1:29,18:32:47:0.383:2	0/1:30,39:32:69:0.565:2	./.	0/1:34,39:33:73:0.534:2	0/1:16,29:33:45:0.644:2	0/1:31,20:33:51:0.392:2
chr2	1499927	rs732609	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,21:33:40:0.525:2	0/1:13,9:31:22:0.409:2	./.	./.	0/1:25,27:32:53:0.519:2	0/1:24,21:31:45:0.467:2	0/1:29,37:31:66:0.561:2	0/1:31,25:32:56:0.446:2	0/1:33,34:34:67:0.507:2	0/1:14,31:33:45:0.689:2	0/1:27,19:30:46:0.413:2
chr2	1500437	rs13429240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,81:31:190:0.426:2	./.	./.	./.
chr2	1507560	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:29:61:0.377:2	./.	./.	./.	./.	./.
chr2	1507598	rs28912994	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	./.	0/1:17,25:30:42:0.595:2	./.	./.	./.	./.
chr2	1520676	rs1126799	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:28:38:1.00:2	0/1:0,23:30:23:1.00:2	./.	0/1:33,30:29:63:0.476:2	0/1:2,45:29:47:0.957:2	0/1:30,17:29:47:0.362:2	./.	0/1:25,21:31:46:0.457:2	0/1:28,21:31:49:0.429:2	0/1:33,22:29:55:0.400:2	0/1:25,19:28:44:0.432:2
chr2	1544539	rs28915676	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1544617	rs12615819	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	0/1:83,53:31:136:0.390:2	0/1:100,73:31:173:0.422:2	./.	0/1:109,70:32:179:0.391:2	0/1:105,75:32:180:0.417:2	./.	0/1:98,79:32:177:0.446:2
chr2	1546327	rs1042589	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:30:74:1.00:2	./.	./.	0/1:1,59:29:60:0.983:2	0/1:51,37:31:88:0.420:2	0/1:51,40:31:91:0.440:2	0/1:52,31:29:83:0.373:2	./.
chr2	1642700	rs61747875	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:31:98:0.439:2	0/1:44,15:31:59:0.254:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1642736	rs61747868	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:32:76:0.447:2	0/1:37,14:32:51:0.275:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1647171	rs6730800	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,17:32:17:1.00:2
chr2	1652660	rs3811613	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:29:12:0.500:2	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1652822	rs1863135	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:27:73:1.00:2	0/1:0,25:26:25:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,113:28:113:1.00:2	0/1:0,163:28:163:1.00:2	0/1:0,126:29:126:1.00:2	0/1:0,148:28:148:1.00:2	0/1:0,134:28:134:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,61:28:61:1.00:2
chr2	1664654	rs17841813	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,9:26:22:0.409:2	0/1:15,6:26:21:0.286:2	0/1:0,8:28:8:1.00:2	0/1:16,18:28:34:0.529:2	0/1:19,20:27:39:0.513:2	0/1:0,31:29:31:1.00:2	0/1:1,45:28:46:0.978:2	0/1:33,27:27:60:0.450:2	0/1:16,16:29:33:0.500:2	./.	0/1:0,33:28:33:1.00:2
chr2	1842968	rs6728368	T	A,C	.	PASS	AC=1,5;AF=0.056,0.278;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0/2:30:41:1.00:2	0/2:31:30:1.00:2	./.	./.	./.	0/2:30:68:0.309:2	0/2:30:68:0.338:2	0/2:31:71:0.507:2	./.	0/1:30:54:1.00:2	./.
chr2	1843079	rs200125635	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,45:31:80:0.563:2	./.	./.	./.
chr2	1893049	rs71442304	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,39:32:88:0.443:2	./.
chr2	1893133	rs75247762	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:31:55:0.382:2
chr2	1926437	rs1529667	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:33:109:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,20:33:20:1.00:2	0/1:67,61:32:129:0.477:2	0/1:0,144:32:144:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,104:33:104:1.00:2
chr2	1926488	rs13399855	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:32:27:0.593:2	./.	./.	./.	./.	./.	./.	0/1:75,60:31:135:0.444:2	./.
chr2	1946914	rs3748988	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:105,56:27:161:0.348:2	0/1:47,55:29:103:0.539:2	0/1:10,10:27:20:0.500:2	./.	./.	0/1:89,57:28:148:0.390:2	./.	0/1:95,59:28:155:0.383:2	./.	0/1:0,149:28:149:1.00:2	0/1:69,72:27:143:0.511:2
chr2	1946968	rs3748989	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,77:32:186:0.414:2	0/1:49,61:32:110:0.555:2	./.	./.	./.	0/1:89,99:31:188:0.527:2	./.	./.	./.	./.	./.
chr2	3212481	rs17327576	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,46:29:121:0.380:2	0/1:68,66:29:134:0.493:2	./.	./.	./.	./.	./.
chr2	3212704	rs7595702	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,20:30:44:0.455:2	0/1:0,53:31:53:1.00:2	./.	0/1:32,22:32:54:0.407:2	./.	0/1:13,24:32:37:0.649:2	0/1:37,23:32:60:0.383:2
chr2	3212712	rs28705690	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,21:28:32:0.656:2	0/1:11,13:28:24:0.542:2	./.	./.	./.	./.	./.	./.	0/1:20,22:30:42:0.524:2	./.	0/1:24,33:29:57:0.579:2
chr2	3261095	rs201697774	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,64:30:161:0.398:2	./.	./.	./.	./.	./.	./.
chr2	3261173	rs10188932	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,56:32:114:0.491:2	0/1:30,24:32:54:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,67:32:146:0.459:2
chr2	3322700	rs75927199	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,28:31:81:0.346:2	./.	./.	./.	./.	./.	0/1:32,32:31:64:0.500:2	./.
chr2	3356995	rs62119517	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,20:31:50:0.400:2	0/1:71,63:32:134:0.470:2	./.	0/1:60,56:32:116:0.483:2	./.	./.	./.
chr2	3392037	rs200331319	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,11:19:72:0.153:2	./.	./.	./.	./.	./.
chr2	3392075	rs10865541	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,5:33:15:0.333:2	0/1:0,83:32:83:1.00:2	0/1:60,46:31:106:0.434:2	0/1:39,51:32:90:0.567:2	0/1:1,71:32:72:0.986:2	0/1:73,69:32:142:0.486:2	0/1:44,32:31:76:0.421:2	0/1:0,48:32:48:1.00:2	./.
chr2	3392290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	3392295	rs11686212	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,47:32:53:0.887:2	0/1:53,46:31:99:0.465:2	./.	0/1:0,40:33:40:1.00:2	./.	0/1:37,19:31:56:0.339:2	0/1:0,29:33:29:1.00:2	./.
chr2	3425423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,11:22:137:0.080:2
chr2	3425514	rs7558487	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:32:30:0.567:2	0/1:1,160:32:161:0.994:2	0/1:80,81:32:162:0.503:2	0/1:94,71:32:165:0.430:2	0/1:1,183:32:184:0.995:2	0/1:1,157:32:158:0.994:2	0/1:63,66:33:129:0.512:2	0/1:0,121:32:121:1.00:2	./.
chr2	3425729	rs1132171	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,56:29:130:0.431:2	./.	./.	./.	./.
chr2	3469463	rs4971514	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,13:33:31:0.419:2	0/1:13,13:33:26:0.500:2	./.	0/1:42,15:32:57:0.263:2	0/1:34,25:32:59:0.424:2	0/1:34,25:32:59:0.424:2	0/1:12,16:32:28:0.571:2	./.	0/1:37,36:33:73:0.493:2	0/1:0,40:33:40:1.00:2	0/1:43,38:32:81:0.469:2
chr2	3470115	rs7593516	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:86,71:29:157:0.452:2	0/1:58,58:29:116:0.500:2	./.	0/1:92,95:30:187:0.508:2	./.	0/1:93,94:30:188:0.503:2	0/1:3,181:29:184:0.984:2	./.	./.	0/1:0,172:29:172:1.00:2	0/1:97,67:28:164:0.409:2
chr2	3470124	rs7574517	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,75:32:164:0.457:2	0/1:58,63:32:121:0.521:2	./.	0/1:84,94:32:178:0.528:2	0/1:191,4:34:196:0.021:2	0/1:100,90:32:190:0.474:2	0/1:2,182:32:184:0.989:2	./.	./.	0/1:0,172:32:172:1.00:2	0/1:92,74:33:167:0.446:2
chr2	3481531	rs11548215	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,53:29:125:0.424:2	./.	0/1:83,54:29:137:0.394:2	./.	./.	0/1:112,75:29:187:0.401:2
chr2	3483181	rs13986	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,51:32:140:0.364:2	0/1:35,29:31:64:0.453:2	./.	0/1:91,56:31:147:0.381:2	0/1:109,76:31:185:0.411:2	./.	0/1:94,81:31:175:0.463:2	./.	./.	./.	0/1:62,57:31:119:0.479:2
chr2	3483205	rs6767	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,48:30:117:0.414:2	0/1:36,27:29:63:0.429:2	./.	0/1:82,52:30:134:0.388:2	0/1:84,62:30:146:0.425:2	0/1:83,66:29:150:0.443:2	0/1:2,144:29:146:0.986:2	./.	0/1:71,54:31:125:0.432:2	0/1:0,100:30:100:1.00:2	0/1:56,55:30:111:0.495:2
chr2	3488502	rs9752130	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,76:30:186:0.409:2	0/1:56,58:29:114:0.509:2	./.	0/1:101,93:30:194:0.479:2	0/1:103,78:30:181:0.431:2	0/1:110,79:30:189:0.418:2	0/1:0,176:30:176:1.00:2	./.	0/1:117,74:30:191:0.387:2	0/1:0,179:29:179:1.00:2	0/1:104,68:29:172:0.395:2
chr2	3504481	rs191945648	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,11:30:15:0.733:2
chr2	3504548	rs116562960	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:27:50:0.500:2	./.	./.
chr2	3504615	rs149600945	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,47:27:107:0.439:2	./.	./.
chr2	3504687	rs9950	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,54:30:92:0.587:2	0/1:39,33:30:72:0.458:2	./.	./.	./.	0/1:71,87:29:158:0.551:2	0/1:97,85:30:182:0.467:2	./.	./.	0/1:0,126:29:126:1.00:2	0/1:67,49:28:116:0.422:2
chr2	3518643	rs7566663	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:27:24:0.391:2	0/1:3,4:26:7:0.571:2	./.	./.	./.	0/1:12,7:27:19:0.368:2	0/1:6,10:26:16:0.625:2	./.	0/1:15,10:27:25:0.400:2	0/1:17,4:28:21:0.190:2	0/1:9,14:27:23:0.609:2
chr2	3597974	rs10186193	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.	0/1:12,6:29:18:0.333:2	0/1:1,26:30:27:0.963:2	0/1:0,12:26:12:1.00:2	0/1:10,21:29:31:0.677:2	./.	0/1:23,6:29:29:0.207:2
chr2	3604417	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2
chr2	3605468	rs12711976	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:31:17:1.00:2	0/1:2,114:32:116:0.983:2	0/1:1,94:31:95:0.989:2	0/1:57,59:32:116:0.509:2	0/1:60,37:32:97:0.381:2	0/1:0,121:32:121:1.00:2	0/1:0,115:32:115:1.00:2	0/1:61,48:31:109:0.440:2	0/1:1,118:31:120:0.992:2
chr2	3624171	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.
chr2	3628383	rs2071639	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,18:31:29:0.621:2	./.	0/1:23,8:30:31:0.258:2	./.	0/1:0,26:30:26:1.00:2	./.	./.	0/1:39,13:31:52:0.250:2
chr2	3652616	rs3769507	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,36:32:38:0.947:2	0/1:0,40:32:40:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,57:33:58:0.983:2	0/1:0,35:31:35:1.00:2	0/1:44,31:32:75:0.413:2	0/1:31,30:32:61:0.492:2	0/1:0,67:32:67:1.00:2	0/1:34,38:32:72:0.528:2	./.	0/1:60,37:31:97:0.381:2
chr2	3653842	rs72767191	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	0/1:30,33:29:63:0.524:2	./.	./.	./.	./.	./.
chr2	3653844	rs3739147	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,43:27:45:0.956:2	0/1:0,17:26:17:1.00:2	0/1:0,7:29:7:1.00:2	0/1:1,39:28:40:0.975:2	0/1:0,41:26:41:1.00:2	0/1:28,33:26:61:0.541:2	0/1:28,17:27:45:0.378:2	0/1:0,46:27:46:1.00:2	0/1:36,17:25:53:0.321:2	./.	0/1:32,17:26:49:0.347:2
chr2	3673609	rs76490827	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,21:27:45:0.467:2	./.	./.	./.	./.	./.	./.
chr2	3673648	rs10170348	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,36:32:96:0.375:2	./.	./.	./.	0/1:57,28:31:85:0.329:2
chr2	3685163	rs34347618	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,73:33:168:0.437:2	./.	./.	./.	./.	./.	./.
chr2	3688861	rs144276483	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,60:32:174:0.347:2	./.	./.	./.	./.	./.	./.
chr2	3691071	rs34436491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,70:33:138:0.507:2	./.	./.
chr2	3691548	rs7567833	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,45:30:127:0.354:2	./.	./.	./.	0/1:44,45:30:89:0.506:2	./.	./.
chr2	3721729	rs12105179	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:32:7:1.00:2	0/1:39,24:32:63:0.381:2	0/1:2,25:33:27:0.926:2	./.	0/1:2,27:32:29:0.931:2	./.	0/1:34,23:33:57:0.404:2	0/1:0,45:31:45:1.00:2	0/1:49,50:30:99:0.505:2
chr2	3726083	rs115017990	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:34:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:56,72:33:128:0.563:2
chr2	3729254	rs13426642	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:30:32:0.500:2	./.	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.
chr2	3800383	rs357969	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:93,72:32:165:0.436:2	0/1:64,62:32:126:0.492:2	./.	./.	0/1:0,87:31:87:1.00:2	./.	0/1:75,71:31:146:0.486:2	0/1:5,141:31:147:0.966:2	./.	./.	./.
chr2	3815444	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:32:88:0.068:2	./.	./.	./.	./.	./.
chr2	3826387	rs13021385	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,20:32:63:0.317:2	0/1:30,20:31:50:0.400:2	0/1:41,32:31:73:0.438:2	./.	0/1:29,28:31:57:0.491:2	./.	./.	./.
chr2	5834493	rs114244809	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,44:29:107:0.411:2	0/1:57,50:29:107:0.467:2	./.	./.
chr2	5836420	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:28:78:0.487:2	0/1:26,11:30:37:0.297:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	5838030	rs4371338	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,19:30:49:0.388:2	0/1:25,7:32:32:0.219:2	0/1:3,4:28:7:0.571:2	./.	0/1:28,22:30:51:0.440:2	0/1:30,29:31:59:0.492:2	./.	./.	./.	0/1:37,24:31:61:0.393:2	0/1:0,74:32:74:1.00:2
chr2	5838210	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,14:30:24:0.583:2
chr2	5838462	rs186254244	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:31:72:0.500:2
chr2	5839686	rs13419910	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,33:33:73:0.452:2	0/1:25,8:33:33:0.242:2	0/1:0,3:31:3:1.00:2	./.	0/1:18,19:33:37:0.514:2	0/1:29,23:33:52:0.442:2	./.	./.	./.	0/1:21,25:32:46:0.543:2	0/1:0,85:34:86:1.00:2
chr2	5839811	rs66465560	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:30:15:0.400:2	./.
chr2	5840014	rs56096754	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,3:32:21:0.143:2	./.	./.	./.	./.	./.	./.
chr2	5840143	rs75529147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.	./.	./.	./.	./.	./.
chr2	5840461	rs6729137	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:29:43:0.395:2	./.
chr2	5840567	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.
chr2	5841141	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.
chr2	5841232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	6990020	rs10495545	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:33:49:0.408:2	./.	./.	./.	./.	./.	./.
chr2	7005369	rs11678810	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,3:34:3:1.00:2	./.	./.	./.	./.	./.
chr2	7027244	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2
chr2	7137067	rs364891	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:34:7:1.00:2	0/1:4,76:33:80:0.950:2	0/1:1,58:32:59:0.983:2	0/1:0,51:32:51:1.00:2	./.	0/1:0,74:32:74:1.00:2	0/1:0,51:33:51:1.00:2	0/1:28,26:33:54:0.481:2	0/1:1,39:33:40:0.975:2
chr2	7154632	rs309325	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,95:29:95:1.00:2
chr2	7164578	rs376219	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:34:9:0.333:2	./.	0/1:55,45:32:100:0.450:2	0/1:37,39:34:77:0.513:2	./.	0/1:49,36:32:85:0.424:2	./.	0/1:37,37:33:74:0.500:2	./.
chr2	7208361	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.
chr2	7208422	rs1869297	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,16:33:61:0.262:2	./.	./.	./.	0/1:38,42:32:80:0.525:2	./.	./.	./.
chr2	8871342	rs1044280	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:31:49:0.490:2	./.	./.	0/1:0,67:31:67:1.00:2	0/1:27,27:31:54:0.500:2	./.
chr2	8871880	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.
chr2	8877037	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chr2	8877042	rs61742863	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,57:31:124:0.460:2	./.	0/1:83,80:31:163:0.491:2	./.	./.	./.	./.	./.
chr2	8936927	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:29:198:0.025:2	./.	./.	./.
chr2	9000769	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.	./.	./.
chr2	9013273	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.
chr2	9491017	rs4669385	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,51:29:51:1.00:2
chr2	9514917	rs33930824	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,31:31:82:0.378:2	0/1:29,26:31:55:0.473:2	./.	0/1:54,60:30:114:0.526:2	0/1:65,43:29:108:0.398:2	./.	0/1:65,43:31:109:0.398:2	./.	./.	./.	./.
chr2	9519110	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.
chr2	9520874	rs11888409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,40:31:89:0.449:2	./.	./.	./.
chr2	9528536	rs2715860	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:33:15:0.600:2	./.	0/1:77,91:33:168:0.542:2	./.	0/1:94,96:33:190:0.505:2	0/1:0,167:33:167:1.00:2	0/1:108,80:33:188:0.426:2	./.	0/1:0,174:32:174:1.00:2
chr2	9533774	rs6728908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	./.	./.
chr2	9547591	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:30:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	9588338	rs11890304	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,75:30:173:0.434:2	./.	./.	./.
chr2	9616161	rs61732203	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:32:190:0.537:2	./.	./.	./.	./.	0/1:102,63:32:165:0.382:2
chr2	9634856	rs1048610	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,74:31:162:0.457:2	0/1:34,32:30:66:0.485:2	0/1:9,6:30:15:0.400:2	0/1:109,73:31:182:0.401:2	0/1:2,121:30:123:0.984:2	./.	0/1:3,129:30:132:0.977:2	0/1:3,167:30:170:0.982:2	0/1:0,165:30:165:1.00:2	./.	0/1:102,79:29:181:0.436:2
chr2	9637331	rs56237316	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,91:29:176:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr2	9683364	rs61754178	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:33:40:0.475:2	./.
chr2	9695682	rs144458353	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:32:57:0.439:2	./.	./.
chr2	9983686	rs2303914	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,6:28:19:0.316:2	0/1:7,14:30:21:0.667:2	0/1:5,7:31:12:0.583:2	0/1:0,22:30:22:1.00:2	0/1:1,5:32:6:0.833:2	0/1:1,18:28:19:0.947:2	0/1:6,5:28:11:0.455:2
chr2	9983704	rs144776624	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.
chr2	9983716	rs385513	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,7:31:7:1.00:2	./.	0/1:0,9:31:9:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,2:35:2:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,6:30:6:1.00:2
chr2	9991696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:29:66:0.062:2	./.	./.	./.	./.
chr2	10008792	rs150737308	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	10045014	rs400917	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,13:31:32:0.406:2	0/1:17,5:31:22:0.227:2	0/1:0,2:31:2:1.00:2	0/1:0,31:31:31:1.00:2	0/1:11,11:31:22:0.500:2	0/1:0,15:28:15:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,26:31:26:1.00:2	0/1:2,27:30:29:0.931:2	0/1:35,15:32:50:0.300:2
chr2	10045024	rs396190	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,29:31:30:0.967:2	0/1:0,17:30:17:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,32:31:32:1.00:2	0/1:4,31:31:35:0.886:2	0/1:0,52:32:52:1.00:2
chr2	10045113	rs116114439	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:32:77:0.440:2	./.	./.
chr2	10050947	rs1054561	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,66:33:131:0.504:2	0/1:44,41:32:85:0.482:2	0/1:0,12:33:12:1.00:2	0/1:1,145:33:146:0.993:2	./.	0/1:0,154:32:155:1.00:2	0/1:75,50:32:125:0.400:2	./.	0/1:2,185:33:187:0.989:2	0/1:104,49:33:153:0.320:2	./.
chr2	10050960	rs1054565	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,72:33:142:0.507:2	0/1:48,43:32:92:0.473:2	0/1:0,16:32:16:1.00:2	0/1:1,168:33:170:0.994:2	./.	0/1:0,183:32:184:1.00:2	0/1:85,63:33:148:0.426:2	./.	0/1:1,185:34:186:0.995:2	0/1:122,55:33:177:0.311:2	./.
chr2	10059197	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.
chr2	10059770	rs1820965	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,50:32:133:0.376:2	0/1:44,22:31:66:0.333:2	0/1:0,5:28:5:1.00:2	0/1:0,84:31:84:1.00:2	./.	0/1:0,87:31:87:1.00:2	0/1:39,23:30:62:0.371:2	./.	0/1:0,100:32:100:1.00:2	0/1:51,42:32:93:0.452:2	./.
chr2	10059844	rs16867245	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,53:31:129:0.411:2	./.	0/1:64,42:31:106:0.396:2	0/1:87,59:32:146:0.404:2	./.	./.	0/1:110,79:32:189:0.418:2
chr2	10091952	rs111645870	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,28:29:46:0.609:2	./.	0/1:18,20:29:38:0.526:2	./.	./.	./.
chr2	10092019	rs187290376	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.
chr2	10095185	rs16867251	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,31:27:82:0.378:2	./.	0/1:53,47:30:100:0.470:2	0/1:50,42:29:92:0.457:2	./.	./.
chr2	10101468	rs16867256	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	./.	0/1:29,31:31:60:0.517:2	0/1:30,28:32:58:0.483:2	./.	./.
chr2	10126330	rs2303920	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,24:31:68:0.353:2	0/1:34,38:31:72:0.528:2	0/1:0,56:31:56:1.00:2	./.	./.	0/1:46,20:32:66:0.303:2
chr2	10186419	rs35927125	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	0/1:1,104:29:105:0.990:2	./.	./.	./.	./.	./.
chr2	10188649	rs11687357	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,31:31:31:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:20,7:32:27:0.259:2	0/1:0,47:31:47:1.00:2	0/1:17,22:32:39:0.564:2	0/1:0,41:31:41:1.00:2	./.	0/1:0,26:30:26:1.00:2	0/1:0,30:30:30:1.00:2
chr2	10225289	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:34:93:0.043:2	./.	./.
chr2	10262859	rs72542787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:28:67:0.597:2	./.
chr2	10262920	rs1130609	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,11:31:42:0.262:2	0/1:31,9:28:40:0.225:2	0/1:8,4:29:12:0.333:2	0/1:2,52:30:54:0.963:2	0/1:0,31:30:31:1.00:2	0/1:45,32:31:77:0.416:2	0/1:29,14:29:43:0.326:2	./.	0/1:21,24:31:45:0.533:2	0/1:0,40:29:40:1.00:2	0/1:0,18:29:18:1.00:2
chr2	10263566	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:14:28:0.286:2	./.	./.	./.	./.	./.
chr2	10350599	rs7423163	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,31:30:73:0.425:2	./.	./.	./.	0/1:35,40:29:75:0.533:2	./.	./.	./.
chr2	10560218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.
chr2	10563233	rs2270304	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,92:33:163:0.564:2	0/1:33,74:32:107:0.692:2	./.
chr2	10563236	rs55737425	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,60:30:113:0.531:2	0/1:34,30:30:64:0.469:2	0/1:12,12:30:24:0.500:2	0/1:0,128:30:128:1.00:2	./.	0/1:71,67:30:138:0.486:2	0/1:93,84:30:177:0.475:2	./.	./.	./.	0/1:0,109:30:109:1.00:2
chr2	10580912	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr2	10580967	rs1049500	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	10581757	rs1804032	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,89:30:193:0.461:2	./.	./.	./.	./.	./.	./.
chr2	10582196	rs28362407	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,54:31:107:0.505:2	./.	./.	./.	./.	./.	./.
chr2	10584275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.
chr2	10594161	rs201557363	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:30:181:0.448:2
chr2	10595578	rs6432097	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,68:32:132:0.515:2	./.	./.	./.	0/1:75,108:34:183:0.590:2	0/1:6,183:33:189:0.968:2	./.
chr2	10712278	rs3732114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,90:31:176:0.511:2
chr2	10717806	rs2287059	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:68,56:31:124:0.452:2	0/1:35,26:31:61:0.426:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	0/1:73,51:31:124:0.411:2	0/1:85,62:31:147:0.422:2	./.	./.	./.
chr2	10784491	rs3732111	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,45:33:127:0.354:2
chr2	10813677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.
chr2	10908893	rs1198849	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,13:30:29:0.448:2	0/1:8,8:30:16:0.500:2	./.	0/1:19,17:29:36:0.472:2	0/1:0,21:28:21:1.00:2	./.	./.	./.	0/1:0,28:30:29:1.00:2	./.	0/1:24,12:30:36:0.333:2
chr2	10912719	rs72777388	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,27:32:62:0.435:2	0/1:24,16:32:40:0.400:2	0/1:0,12:30:12:1.00:2	./.	./.	./.	0/1:4,57:31:61:0.934:2	./.	./.	0/1:2,48:31:50:0.960:2	./.
chr2	10923353	rs17364812	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,68:28:177:0.384:2
chr2	10928906	rs1734432	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,17:32:23:0.739:2	0/1:13,7:31:20:0.350:2	./.	0/1:13,15:32:28:0.536:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,24:31:24:1.00:2	./.	0/1:0,26:34:26:1.00:2	0/1:0,17:32:17:1.00:2	0/1:21,33:33:54:0.611:2
chr2	10929041	rs141048777	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,74:33:170:0.435:2	./.	./.	./.	./.
chr2	10930903	rs4807	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,60:33:93:0.645:2	0/1:0,81:32:81:1.00:2	./.	./.	./.	0/1:3,113:34:116:0.974:2	./.	./.
chr2	10933249	rs4799	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,31:31:66:0.470:2	0/1:32,33:32:65:0.508:2	0/1:0,13:31:13:1.00:2	0/1:70,73:30:143:0.510:2	0/1:2,83:30:85:0.976:2	./.	0/1:0,140:30:140:1.00:2	./.	0/1:1,125:31:126:0.992:2	0/1:1,95:30:96:0.990:2	./.
chr2	10942687	rs4758	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,38:32:85:0.447:2	0/1:32,25:32:57:0.439:2	0/1:0,7:31:7:1.00:2	0/1:73,42:32:115:0.365:2	0/1:1,61:32:62:0.984:2	./.	0/1:1,92:32:93:0.989:2	./.	0/1:1,115:33:116:0.991:2	0/1:4,95:32:99:0.960:2	0/1:62,75:32:137:0.547:2
chr2	10952790	rs6726687	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr2	10959384	rs55770944	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,37:32:81:0.457:2	0/1:28,15:31:43:0.349:2	0/1:0,8:32:8:1.00:2	./.	./.	./.	0/1:0,30:32:30:1.00:2	./.	./.	0/1:0,58:31:58:1.00:2	./.
chr2	10959407	rs72779451	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,35:32:74:0.473:2	0/1:30,16:32:46:0.348:2	0/1:1,8:33:9:0.889:2	./.	./.	./.	0/1:0,24:33:24:1.00:2	./.	./.	0/1:1,50:32:51:0.980:2	./.
chr2	10959461	rs72779452	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,21:32:41:0.512:2	0/1:24,11:32:35:0.314:2	0/1:2,6:31:8:0.750:2	./.	./.	./.	0/1:1,16:31:17:0.941:2	./.	./.	0/1:1,26:32:27:0.963:2	./.
chr2	11053020	rs3732104	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:8,3:34:11:0.273:2	./.	0/1:9,3:30:12:0.250:2	0/1:0,2:34:2:1.00:2	./.	./.
chr2	11053740	rs3732105	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,56:32:57:0.982:2	0/1:0,36:31:36:1.00:2	0/1:0,6:27:6:1.00:2	0/1:50,37:31:87:0.425:2	0/1:0,132:31:132:1.00:2	0/1:43,40:31:83:0.482:2	0/1:0,112:31:112:1.00:2	./.	0/1:0,91:32:91:1.00:2	0/1:39,30:31:69:0.435:2	0/1:47,24:30:71:0.338:2
chr2	11332408	rs2230775	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:29:43:0.465:2	./.	./.	./.	./.	./.
chr2	11333994	rs2271621	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:5,3:34:8:0.375:2	./.	0/1:8,10:32:18:0.556:2	0/1:0,21:32:21:1.00:2	./.
chr2	11338854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	11359120	rs2230774	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,104:32:106:0.981:2	0/1:0,85:32:85:1.00:2	0/1:14,12:31:26:0.462:2	0/1:3,107:31:110:0.973:2	0/1:46,24:31:70:0.343:2	./.	./.	0/1:2,102:31:104:0.981:2	0/1:83,58:32:141:0.411:2	./.	0/1:3,158:32:162:0.981:2
chr2	11587798	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.
chr2	11591862	rs201487102	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:32:153:0.039:2	./.
chr2	11591879	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:117:0.034:2	0/1:87,6:32:93:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	11593766	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:30:132:0.030:2	./.	./.
chr2	11597303	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:28:158:0.032:2	./.	./.	./.	./.	./.
chr2	11605936	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.
chr2	11702661	rs10929757	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,50:32:128:0.391:2	0/1:34,31:31:65:0.477:2	0/1:0,15:31:15:1.00:2	0/1:87,71:32:158:0.449:2	0/1:83,82:32:167:0.497:2	0/1:78,70:32:149:0.473:2	0/1:0,181:33:181:1.00:2	./.	0/1:73,71:33:144:0.493:2	0/1:74,65:32:139:0.468:2	0/1:60,52:31:112:0.464:2
chr2	11727507	rs13394619	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,18:33:48:0.375:2	0/1:16,19:31:35:0.543:2	./.	./.	0/1:29,9:31:38:0.237:2	./.	0/1:33,11:32:44:0.250:2	0/1:0,36:31:36:1.00:2	0/1:24,21:30:45:0.467:2	0/1:28,14:31:42:0.333:2	0/1:36,12:31:48:0.250:2
chr2	11728854	rs72772076	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	11731541	rs189034221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,17:31:48:0.354:2	./.	./.	./.	./.	./.	./.
chr2	11733134	rs76842987	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:29:63:0.349:2
chr2	11738091	rs1435547	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,34:27:34:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,85:29:85:1.00:2
chr2	11738884	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:31:74:0.432:2	0/1:18,28:32:46:0.609:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	11738951	rs1865576	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.
chr2	11740961	rs76644468	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,33:32:89:0.371:2	./.	./.	./.	./.	./.	0/1:32,50:33:82:0.610:2	./.
chr2	11752635	rs2304399	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,184:30:184:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,184:30:184:1.00:2	0/1:2,189:29:191:0.990:2	0/1:0,182:30:182:1.00:2	0/1:1,194:31:195:0.995:2	0/1:0,187:30:188:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,185:30:185:1.00:2	0/1:0,177:30:178:1.00:2
chr2	11770219	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.
chr2	11773065	rs368641146	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:124:0.033:2	./.
chr2	11774324	rs2304402	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:31:127:1.00:2	0/1:0,91:32:91:1.00:2	0/1:1,23:31:24:0.958:2	0/1:74,81:31:155:0.523:2	0/1:87,94:30:181:0.519:2	0/1:91,102:30:193:0.528:2	0/1:1,191:30:193:0.995:2	0/1:2,189:30:191:0.990:2	./.	./.	0/1:70,80:31:150:0.533:2
chr2	11810091	rs114415067	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	11810095	rs6432225	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:32:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,6:33:6:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:28:2:1.00:2	./.	./.
chr2	11911761	rs11538448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,92:33:177:0.520:2	./.	./.
chr2	11913845	rs145180224	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:29:37:0.541:2	./.
chr2	11935579	rs146100011	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,80:32:152:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr2	12864766	rs2288192	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,96:32:197:0.487:2	./.	0/1:3,182:33:185:0.984:2	0/1:5,178:33:183:0.973:2	./.	./.	./.
chr2	14777101	rs190824730	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:30:17:0.647:2	./.
chr2	14779829	rs2196267	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:30:10:1.00:2	0/1:59,76:30:135:0.563:2	0/1:46,26:29:72:0.361:2	0/1:54,44:29:98:0.449:2	0/1:46,39:29:85:0.459:2	0/1:69,56:29:125:0.448:2	./.	0/1:55,51:30:106:0.481:2	./.
chr2	14780038	rs1865456	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,14:32:35:0.400:2	0/1:16,8:32:24:0.333:2	0/1:17,17:32:34:0.500:2	0/1:8,8:33:16:0.500:2	0/1:19,6:32:25:0.240:2	./.	0/1:16,17:32:33:0.515:2	./.
chr2	15372562	rs6710817	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	0/1:38,24:31:62:0.387:2	./.	0/1:48,20:32:68:0.294:2	./.	./.	./.
chr2	15378808	rs34080125	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:33:38:0.474:2	./.	0/1:21,13:32:34:0.382:2	./.	./.	./.	./.	./.
chr2	15519924	rs116210837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	./.	./.	./.	./.
chr2	15523436	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr2	15533779	rs9710889	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,39:33:75:0.520:2	0/1:28,12:32:40:0.300:2	0/1:0,3:31:3:1.00:2	0/1:0,75:31:75:1.00:2	0/1:22,13:31:35:0.371:2	0/1:44,18:31:62:0.290:2	0/1:1,26:32:27:0.963:2	0/1:0,56:32:56:1.00:2	0/1:0,46:33:46:1.00:2	0/1:32,19:32:51:0.373:2	0/1:43,30:31:73:0.411:2
chr2	15601441	rs7590340	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,19:32:47:0.404:2	0/1:16,10:32:26:0.385:2	0/1:0,5:31:5:1.00:2	0/1:0,56:31:56:1.00:2	0/1:23,13:30:36:0.361:2	0/1:22,21:31:43:0.488:2	0/1:1,27:30:28:0.964:2	0/1:0,35:31:35:1.00:2	0/1:1,43:31:44:0.977:2	0/1:19,18:32:37:0.486:2	0/1:43,35:33:78:0.449:2
chr2	15607842	rs4668909	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,47:33:97:0.485:2	0/1:34,28:32:62:0.452:2	0/1:0,21:32:21:1.00:2	0/1:47,66:33:113:0.584:2	0/1:31,31:32:62:0.500:2	0/1:48,42:32:90:0.467:2	0/1:0,90:32:90:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,127:34:127:1.00:2	0/1:38,46:32:84:0.548:2	0/1:56,75:32:131:0.573:2
chr2	15614404	rs13014906	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,37:32:71:0.521:2	0/1:14,18:31:32:0.563:2	0/1:0,6:32:6:1.00:2	0/1:0,34:32:34:1.00:2	0/1:17,15:31:32:0.469:2	0/1:32,22:31:54:0.407:2	0/1:3,27:32:30:0.900:2	0/1:0,61:32:61:1.00:2	0/1:0,59:33:59:1.00:2	0/1:21,28:33:49:0.571:2	0/1:55,36:32:91:0.396:2
chr2	15615910	rs1990754	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,41:30:94:0.436:2	0/1:20,20:29:40:0.500:2	0/1:0,14:30:14:1.00:2	0/1:1,108:30:109:0.991:2	0/1:20,32:29:52:0.615:2	0/1:40,41:29:81:0.506:2	0/1:3,56:29:59:0.949:2	0/1:0,89:30:89:1.00:2	0/1:0,95:31:95:1.00:2	0/1:44,46:31:90:0.511:2	0/1:61,69:30:130:0.531:2
chr2	15618339	rs1125534	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,3:32:17:0.176:2	0/1:6,3:33:9:0.333:2	./.	0/1:0,18:33:18:1.00:2	0/1:10,6:32:16:0.375:2	0/1:13,12:32:25:0.480:2	0/1:0,8:32:8:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,22:33:22:1.00:2	0/1:14,5:32:19:0.263:2	0/1:23,9:33:32:0.281:2
chr2	15618404	rs76459791	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:32:42:0.548:2
chr2	15674686	rs13029846	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,72:33:153:0.471:2	0/1:49,34:31:83:0.410:2	0/1:0,18:32:18:1.00:2	0/1:93,61:32:154:0.396:2	0/1:58,38:32:96:0.396:2	0/1:76,73:33:149:0.490:2	0/1:1,94:33:95:0.989:2	0/1:7,129:32:136:0.949:2	0/1:1,141:33:142:0.993:2	0/1:94,46:32:140:0.329:2	0/1:115,80:33:195:0.410:2
chr2	15694260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.
chr2	15735648	rs2302929	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.	./.	./.	0/1:37,60:33:97:0.619:2
chr2	15735692	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.
chr2	15747393	rs10929378	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,87:31:87:1.00:2	0/1:0,37:30:37:1.00:2	0/1:1,75:30:76:0.987:2	0/1:34,22:31:56:0.393:2	0/1:43,39:30:82:0.476:2	0/1:47,47:32:94:0.500:2	0/1:0,52:31:52:1.00:2	0/1:0,115:32:115:1.00:2
chr2	15768981	rs62122280	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,25:32:25:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:15,10:32:25:0.400:2	0/1:7,18:32:25:0.720:2	./.	./.
chr2	15840623	rs58183965	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:32:90:0.506:2	./.	./.	./.	./.	./.
chr2	15840645	rs4668962	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,80:32:80:1.00:2	0/1:4,41:33:45:0.911:2	0/1:8,7:33:15:0.467:2	./.	0/1:1,56:32:57:0.982:2	0/1:40,37:32:77:0.481:2	0/1:2,55:33:57:0.965:2	0/1:0,91:33:91:1.00:2	0/1:0,86:34:86:1.00:2	./.	./.
chr2	16082255	rs141260022	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:28:191:0.026:2
chr2	16734284	rs12997119	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:29:14:0.571:2	./.	./.	./.	./.	./.	0/1:76,67:29:143:0.469:2	0/1:68,56:29:124:0.452:2	0/1:70,72:29:142:0.507:2
chr2	17696573	rs834514	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,71:31:71:1.00:2	0/1:12,17:31:29:0.586:2	0/1:2,156:31:158:0.987:2	./.	0/1:0,140:31:140:1.00:2	0/1:2,109:32:111:0.982:2	0/1:3,163:31:166:0.982:2	0/1:1,168:32:169:0.994:2	0/1:102,60:32:162:0.370:2	0/1:104,79:31:183:0.432:2
chr2	17696756	rs17314548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:32:67:0.373:2	./.
chr2	17697057	rs17380212	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,54:33:105:0.514:2	./.
chr2	17697404	rs76177128	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:32:64:0.453:2	./.
chr2	17697635	rs181531922	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,19:33:40:0.475:2	./.	./.	./.	./.	./.	0/1:20,21:33:41:0.512:2	./.
chr2	17698085	rs62130402	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:31:37:0.514:2	./.
chr2	17698091	rs62130403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2	./.
chr2	17698213	rs62130404	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,15:33:65:0.231:2	./.
chr2	17698220	rs62130405	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,16:32:68:0.235:2	./.
chr2	17698678	rs665312	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:33:27:1.00:2	0/1:0,13:32:13:1.00:2	0/1:1,6:32:7:0.857:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,34:31:34:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,35:32:35:1.00:2	0/1:1,16:33:17:0.941:2	0/1:17,16:32:34:0.485:2
chr2	17699275	rs114644105	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:31:57:0.526:2	./.
chr2	17846775	rs139276977	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,45:32:91:0.495:2	0/1:22,15:31:37:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	17851746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr2	17884495	rs1065381	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,16:31:32:0.500:2	0/1:13,10:28:23:0.435:2	./.	./.	0/1:0,32:30:32:1.00:2	./.	./.	./.	./.	./.	./.
chr2	17897488	rs35195207	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,69:32:70:0.986:2	./.	./.	./.	./.	./.	./.
chr2	17942775	rs1812152	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,54:31:156:0.348:2	0/1:41,34:31:75:0.453:2	0/1:0,20:32:20:1.00:2	0/1:82,95:31:177:0.537:2	./.	0/1:1,138:30:139:0.993:2	0/1:2,112:31:114:0.982:2	0/1:0,173:31:173:1.00:2	0/1:0,149:31:149:1.00:2	0/1:4,140:31:145:0.972:2	0/1:1,186:30:187:0.995:2
chr2	17946243	rs16981869	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:32:189:0.032:2	./.	0/1:54,39:33:93:0.419:2	0/1:70,74:32:144:0.514:2
chr2	17954027	rs300175	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,68:32:68:1.00:2	0/1:1,82:32:83:0.988:2
chr2	17954421	rs300177	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,40:32:82:0.488:2	0/1:27,19:32:46:0.413:2	0/1:0,13:32:13:1.00:2	0/1:44,29:33:73:0.397:2	./.	0/1:0,73:32:73:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,71:33:72:1.00:2	0/1:1,52:33:53:0.981:2	0/1:1,89:32:90:0.989:2
chr2	17962450	rs300168	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,20:32:44:0.455:2	0/1:21,11:33:32:0.344:2	0/1:0,12:32:12:1.00:2	0/1:28,20:32:48:0.417:2	./.	0/1:0,42:32:42:1.00:2	0/1:1,24:32:25:0.960:2	0/1:0,37:32:37:1.00:2	0/1:0,40:34:40:1.00:2	0/1:19,21:33:40:0.525:2	0/1:36,20:32:56:0.357:2
chr2	17962518	rs300169	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,21:32:53:0.396:2	0/1:16,19:31:35:0.543:2	0/1:0,5:30:5:1.00:2	0/1:45,22:31:67:0.328:2	./.	0/1:0,51:29:51:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,67:32:67:1.00:2
chr2	17963171	rs17315702	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,50:33:110:0.455:2
chr2	17998025	rs34069439	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,19:32:42:0.452:2	0/1:16,11:30:27:0.407:2	0/1:0,6:30:6:1.00:2	./.	0/1:17,21:30:38:0.553:2	0/1:29,22:29:51:0.431:2	0/1:15,11:30:26:0.423:2	0/1:0,39:31:39:1.00:2	0/1:25,15:30:40:0.375:2	./.	0/1:0,31:31:31:1.00:2
chr2	17998095	rs35858730	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,28:31:54:0.519:2	0/1:21,19:31:40:0.475:2	0/1:0,8:31:8:1.00:2	./.	0/1:43,46:30:90:0.517:2	0/1:38,58:30:96:0.604:2	0/1:48,40:31:88:0.455:2	0/1:1,101:31:103:0.990:2	0/1:67,37:32:104:0.356:2	./.	0/1:0,70:31:70:1.00:2
chr2	17998331	rs13001625	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,18:32:42:0.429:2	0/1:16,7:33:23:0.304:2	0/1:0,5:32:5:1.00:2	./.	0/1:16,27:32:43:0.628:2	0/1:29,32:31:61:0.525:2	0/1:27,33:32:60:0.550:2	0/1:1,53:32:54:0.981:2	0/1:34,26:33:60:0.433:2	./.	0/1:0,48:32:48:1.00:2
chr2	18112314	rs35186900	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:31:181:0.448:2	0/1:107,82:32:189:0.434:2	./.	./.	./.	0/1:70,109:32:179:0.609:2
chr2	18112473	rs4240213	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:32:139:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,144:31:144:1.00:2	0/1:0,90:30:90:1.00:2	0/1:64,81:31:145:0.559:2	0/1:86,65:31:151:0.430:2	0/1:0,170:31:170:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,113:31:113:1.00:2	0/1:104,74:31:178:0.416:2
chr2	18113508	rs3747516	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,45:31:126:0.357:2	./.	0/1:57,41:32:98:0.418:2	./.	./.
chr2	18113623	rs4832524	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,49:29:98:0.500:2	0/1:33,46:30:79:0.582:2	0/1:0,16:29:16:1.00:2	0/1:0,102:29:102:1.00:2	0/1:96,66:29:162:0.407:2	0/1:79,51:29:130:0.392:2	0/1:91,88:29:179:0.492:2	0/1:83,93:30:176:0.528:2	0/1:71,61:31:133:0.462:2	0/1:1,117:29:118:0.992:2	./.
chr2	18113789	rs3747515	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,8:31:21:0.381:2	0/1:13,9:32:22:0.409:2	./.	0/1:16,12:31:28:0.429:2	0/1:11,8:32:19:0.421:2	0/1:16,21:31:37:0.568:2	./.	0/1:7,7:30:14:0.500:2	./.	0/1:10,8:32:18:0.444:2	./.
chr2	18757501	rs3902946	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,186:32:186:1.00:2	./.	0/1:121,78:32:199:0.392:2	./.	./.	./.	0/1:99,91:33:190:0.479:2
chr2	18765169	rs146275944	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:31:44:0.545:2	./.	./.	./.	./.	./.
chr2	18765181	rs76890755	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,19:30:35:0.543:2	./.	./.	./.	./.	./.	./.
chr2	18765403	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.
chr2	18765458	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:34:167:0.024:2
chr2	18768321	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,6:34:120:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr2	18768850	rs16985306	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	0/1:15,12:30:27:0.444:2	./.	./.	./.	0/1:33,22:32:55:0.400:2
chr2	20100825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.
chr2	20101487	rs2304589	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:29:45:0.489:2	./.	0/1:39,26:30:65:0.400:2	0/1:19,20:29:39:0.513:2	./.
chr2	20131079	rs1191778	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:32:119:1.00:2	0/1:0,60:32:60:1.00:2	0/1:3,6:32:9:0.667:2	0/1:80,60:33:140:0.429:2	0/1:48,51:32:99:0.515:2	0/1:82,78:33:160:0.488:2	0/1:45,38:33:83:0.458:2	0/1:1,114:33:115:0.991:2	0/1:71,60:34:131:0.458:2	./.	0/1:0,152:33:152:1.00:2
chr2	20133221	rs2293669	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	20135283	rs6741091	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,16:33:59:0.271:2	./.	0/1:29,17:33:46:0.370:2	./.	0/1:35,25:34:60:0.417:2	0/1:0,85:33:85:1.00:2	./.
chr2	20146230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.
chr2	20189015	rs1060742	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,62:29:115:0.539:2	./.
chr2	20192931	rs35973216	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.	./.	./.	./.	0/1:27,34:32:61:0.557:2	./.
chr2	20202929	rs28452699	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,49:32:125:0.392:2	./.	./.	./.	./.	0/1:50,41:32:91:0.451:2	./.
chr2	20203047	rs370377105	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,5:27:77:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr2	20205541	rs52826764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,57:32:96:0.594:2	./.	./.
chr2	20205680	rs28401180	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,34:31:60:0.567:2	./.	0/1:53,41:32:94:0.436:2	./.	0/1:35,39:33:74:0.527:2	0/1:0,52:32:52:1.00:2	./.
chr2	20205794	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:34:149:0.027:2
chr2	20205848	rs28598872	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,71:33:180:0.394:2	./.	0/1:110,77:33:187:0.412:2	./.	0/1:77,68:33:145:0.469:2	0/1:2,115:32:117:0.983:2	./.
chr2	20240668	rs3731673	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:30:58:0.448:2	./.	0/1:19,25:31:45:0.568:2	./.	./.	./.	./.	./.
chr2	20403794	rs10205485	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,37:32:38:1.00:2
chr2	20403949	rs2230924	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:33:7:0.429:2
chr2	20423063	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.
chr2	20423064	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.
chr2	20458047	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.	./.
chr2	20490515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.
chr2	20526131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr2	20647241	rs7043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:29:43:0.442:2	./.	./.	./.
chr2	20648124	rs112622561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,32:27:55:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr2	20648211	rs1062292	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:7,9:29:16:0.563:2	0/1:1,14:32:15:0.933:2	./.	./.	0/1:15,16:31:31:0.516:2	0/1:5,6:33:11:0.545:2	0/1:2,5:33:7:0.714:2	0/1:0,15:30:15:1.00:2
chr2	20790853	rs149151020	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,54:30:120:0.450:2	./.	./.	./.	./.	0/1:49,26:32:75:0.347:2
chr2	20791002	rs56129345	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,61:32:133:0.459:2	./.	./.	./.
chr2	20792173	rs11096678	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,3:22:3:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,98:31:98:1.00:2	0/1:1,88:31:89:0.989:2	0/1:0,76:32:76:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,46:32:46:1.00:2
chr2	20818764	rs3732149	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,98:27:103:0.980:2	0/1:59,44:29:108:0.427:2	./.	./.	./.	./.	0/1:38,29:27:69:0.433:2
chr2	20818816	rs111886213	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,62:30:141:0.443:2	./.	./.	./.	./.	./.	./.
chr2	20818840	rs34708707	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,76:30:145:0.524:2	./.	./.	./.	./.	./.
chr2	20823724	rs6531248	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:28:30:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,6:28:6:1.00:2	0/1:1,37:28:38:0.974:2	0/1:0,48:27:48:1.00:2	0/1:0,30:26:30:1.00:2	0/1:1,48:29:49:0.980:2	0/1:0,50:28:50:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,47:27:47:1.00:2	0/1:0,22:30:22:1.00:2
chr2	20824498	rs2305458	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	0/1:3,46:32:49:0.939:2	0/1:0,56:31:56:1.00:2	0/1:19,35:32:54:0.648:2	0/1:1,48:31:49:0.980:2	0/1:0,23:32:23:1.00:2	0/1:13,14:32:27:0.519:2	0/1:21,12:32:33:0.364:2
chr2	20824559	rs2305457	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,21:32:43:0.488:2	0/1:7,14:32:21:0.667:2	0/1:2,3:32:5:0.600:2	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.	0/1:24,19:32:43:0.442:2
chr2	20838222	rs3796065	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,94:31:94:1.00:2	0/1:73,74:31:147:0.503:2	./.	./.	./.	./.	0/1:45,56:32:101:0.554:2
chr2	20838318	rs3796064	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:94,73:31:167:0.437:2	0/1:39,30:32:69:0.435:2	./.	./.	./.	./.	0/1:120,71:32:191:0.372:2	0/1:100,85:32:185:0.459:2	./.	./.	0/1:124,66:32:190:0.347:2
chr2	20885321	rs17663874	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,8:31:27:0.296:2	0/1:9,9:32:18:0.500:2	0/1:3,3:31:6:0.500:2	0/1:14,11:32:25:0.440:2	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2	./.	./.
chr2	21225281	rs1042034	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,39:32:39:1.00:2	0/1:2,3:31:5:0.600:2	0/1:0,48:32:48:1.00:2	0/1:28,20:31:48:0.417:2	0/1:0,54:31:54:1.00:2	0/1:0,25:31:25:1.00:2	0/1:1,38:31:39:0.974:2	0/1:0,48:32:48:1.00:2	0/1:26,16:30:42:0.381:2	0/1:0,53:32:53:1.00:2
chr2	21225485	rs1801702	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:30:53:0.472:2	./.	./.	0/1:36,32:30:68:0.471:2	0/1:52,62:29:114:0.544:2
chr2	21225753	rs1042031	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,18:32:47:0.383:2	0/1:21,20:32:41:0.488:2	0/1:4,6:31:10:0.600:2	0/1:0,63:31:63:1.00:2	./.	./.	0/1:24,19:32:43:0.442:2	./.	0/1:49,48:33:97:0.495:2	./.	0/1:49,50:32:99:0.505:2
chr2	21225912	rs1801703	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	21228827	rs1801701	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,53:31:110:0.482:2	./.	0/1:59,46:32:105:0.438:2	0/1:57,43:33:100:0.430:2	./.	./.
chr2	21231398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.
chr2	21231498	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.
chr2	21231524	rs676210	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	0/1:55,36:30:92:0.396:2	./.	./.	./.	./.	0/1:69,53:32:122:0.434:2	./.
chr2	21231592	rs6413458	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:32:63:0.444:2	./.	./.	0/1:28,29:32:57:0.509:2	0/1:50,45:32:95:0.474:2
chr2	21231887	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:32:41:0.439:2	./.	./.	./.	./.	./.
chr2	21232195	rs693	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,59:32:101:0.584:2	0/1:48,36:32:84:0.429:2	./.	./.	./.	0/1:0,85:32:85:1.00:2	./.	0/1:2,92:31:94:0.979:2	0/1:67,83:34:150:0.553:2	./.	./.
chr2	21232803	rs584542	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:31:91:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,56:32:56:1.00:2	0/1:1,91:31:92:0.989:2	0/1:0,70:30:70:1.00:2	0/1:0,88:29:88:1.00:2
chr2	21232804	rs1041968	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,37:33:91:0.407:2	0/1:28,21:32:49:0.429:2	./.	./.	./.	0/1:0,52:31:52:1.00:2	./.	0/1:2,54:31:56:0.964:2	0/1:71,22:32:93:0.237:2	./.	./.
chr2	21233972	rs533617	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,99:29:176:0.563:2	./.	./.	./.	./.	./.	./.
chr2	21234006	rs186480094	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,71:30:195:0.366:2	./.	./.	./.
chr2	21235475	rs568413	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,49:33:49:1.00:2	0/1:1,44:33:45:0.978:2	0/1:0,69:33:69:1.00:2
chr2	21237968	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.
chr2	21246519	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:71:0.057:2
chr2	21249716	rs12691202	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:64,74:30:138:0.536:2	0/1:43,44:31:87:0.506:2	./.	./.	./.	./.	0/1:66,31:30:97:0.320:2	./.	0/1:98,89:31:187:0.476:2	./.	./.
chr2	21250914	rs679899	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,38:32:66:0.576:2	0/1:13,18:32:31:0.581:2	0/1:0,9:31:9:1.00:2	0/1:1,48:31:49:0.980:2	0/1:21,29:31:50:0.580:2	./.	0/1:18,22:29:40:0.550:2	0/1:25,24:31:49:0.490:2	0/1:29,33:32:62:0.532:2	0/1:23,17:31:40:0.425:2	0/1:41,34:31:75:0.453:2
chr2	21263870	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:30:67:0.060:2	./.	./.
chr2	21263900	rs1367117	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,49:32:78:0.628:2	./.	0/1:26,35:31:61:0.574:2	./.	0/1:22,25:31:47:0.532:2	0/1:24,24:32:48:0.500:2	./.	./.
chr2	21360583	rs312966	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,19:30:36:0.528:2	0/1:19,9:29:28:0.321:2	0/1:3,3:30:6:0.500:2	./.	0/1:21,19:30:40:0.475:2	0/1:30,21:28:51:0.412:2	./.	0/1:27,13:28:40:0.325:2	0/1:32,29:30:61:0.475:2	0/1:9,25:28:34:0.735:2	./.
chr2	21363456	rs183014338	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,17:33:47:0.362:2	0/1:15,15:32:30:0.500:2	./.	./.	./.	./.	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.
chr2	23729988	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.
chr2	23785183	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.
chr2	23865260	rs642931	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:29:83:0.988:2	0/1:0,79:29:79:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,125:29:125:1.00:2	0/1:2,108:29:110:0.982:2	0/1:56,68:28:124:0.548:2	0/1:1,136:29:137:0.993:2	0/1:0,105:30:105:1.00:2	0/1:62,39:28:101:0.386:2	./.
chr2	23918891	rs116699585	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,44:31:122:0.361:2	./.	./.	./.	./.	./.	./.
chr2	23919207	rs61744252	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,36:31:90:0.400:2	./.	./.	./.	./.	./.	./.
chr2	23919375	rs3795942	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:0,38:32:38:1.00:2	0/1:4,5:32:9:0.556:2	0/1:72,37:31:109:0.339:2	./.	./.	0/1:1,92:31:93:0.989:2	0/1:66,67:31:133:0.504:2	./.	0/1:46,35:31:81:0.432:2	./.
chr2	24042689	rs62125899	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:32:13:0.308:2	0/1:26,22:33:48:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr2	24046426	rs75866363	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:32:49:0.510:2	./.	./.	./.	./.	0/1:23,22:31:45:0.489:2
chr2	24055058	rs10432637	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:33:105:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,99:34:99:1.00:2	0/1:1,92:33:93:0.989:2	0/1:0,131:33:131:1.00:2
chr2	24106445	rs150821390	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,28:30:66:0.424:2	./.	./.	./.	./.	./.	./.
chr2	24108652	rs7579201	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,94:30:94:1.00:2
chr2	24149439	rs61739076	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:2,4:29:6:0.667:2
chr2	24181159	rs12616678	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,17:31:70:0.243:2	0/1:81,37:30:118:0.314:2	./.	./.	0/1:0,88:32:88:1.00:2	0/1:62,33:32:95:0.347:2	0/1:108,45:31:153:0.294:2
chr2	24244603	rs115334231	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,60:31:135:0.444:2	./.	./.	./.	./.	./.	./.
chr2	24256071	rs17763463	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,38:32:80:0.475:2	./.	./.	./.	./.	./.	./.
chr2	24262060	rs3731620	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,91:32:159:0.572:2	./.	./.	./.	0/1:94,81:32:175:0.463:2	./.	./.	./.
chr2	24262098	rs374485799	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr2	24290671	rs61742149	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,76:30:148:0.514:2	./.	./.	./.	./.	0/1:105,65:31:170:0.382:2
chr2	24291260	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.	./.	./.	./.
chr2	24291269	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:27:197:0.025:2	./.	./.	./.
chr2	24291273	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.	./.
chr2	24291284	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.	./.
chr2	24300563	rs10209238	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,44:32:108:0.407:2	./.	./.	./.	0/1:79,37:33:116:0.319:2	./.	./.	./.
chr2	24338428	rs1056123	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:35:12:0.250:2	./.	./.	./.	0/1:3,15:32:18:0.833:2	./.	./.	./.
chr2	24342505	rs1056122	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:33:24:0.208:2	0/1:0,14:32:14:1.00:2	0/1:16,20:32:36:0.556:2	./.	0/1:16,13:30:29:0.448:2	0/1:16,12:31:28:0.429:2	0/1:13,10:34:23:0.435:2	0/1:9,11:33:20:0.550:2
chr2	24342532	rs1134516	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	./.	./.	0/1:12,9:30:21:0.429:2	./.	./.	./.
chr2	24344060	rs33913065	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	0/1:1,41:28:42:0.976:2	0/1:28,19:29:47:0.404:2	./.	./.	0/1:34,26:29:60:0.433:2	0/1:25,29:28:54:0.537:2	0/1:45,26:29:71:0.366:2
chr2	24347274	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:30:49:0.388:2	./.	./.	./.	./.	./.
chr2	24358001	rs12329297	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,31:33:61:0.508:2	./.	./.	./.	0/1:35,19:31:54:0.352:2	./.	./.	./.
chr2	24369674	rs11693860	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,41:32:76:0.539:2	0/1:23,27:32:50:0.540:2	0/1:0,17:31:17:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,71:31:71:1.00:2	0/1:34,35:31:69:0.507:2	0/1:0,65:32:65:1.00:2	0/1:56,50:32:106:0.472:2	0/1:0,66:32:66:1.00:2	0/1:0,79:32:79:1.00:2
chr2	24384424	rs4665667	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:33:67:0.552:2	0/1:23,23:32:46:0.500:2	0/1:0,13:33:13:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,32:33:32:1.00:2	0/1:17,17:32:34:0.500:2	0/1:0,45:32:45:1.00:2	0/1:41,34:33:75:0.453:2	0/1:0,41:32:41:1.00:2	0/1:0,69:33:69:1.00:2
chr2	24387090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.
chr2	24390517	rs2288072	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,36:31:95:0.379:2	0/1:33,17:32:50:0.340:2	0/1:0,9:30:9:1.00:2	0/1:47,57:31:104:0.548:2	0/1:33,26:31:59:0.441:2	0/1:50,46:31:96:0.479:2	0/1:30,22:32:52:0.423:2	0/1:44,39:31:83:0.470:2	./.	0/1:40,43:32:83:0.518:2	0/1:45,40:32:85:0.471:2
chr2	24395506	rs889830	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,37:28:100:0.370:2	0/1:27,28:29:55:0.509:2	0/1:0,14:29:14:1.00:2	0/1:0,103:29:103:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,132:29:132:1.00:2	0/1:66,63:29:129:0.488:2	0/1:0,112:28:112:1.00:2	0/1:65,60:29:126:0.480:2	0/1:0,80:28:80:1.00:2	0/1:0,101:27:101:1.00:2
chr2	24398446	rs2042468	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,27:30:51:0.529:2	0/1:12,14:31:26:0.538:2	0/1:0,3:31:3:1.00:2	0/1:18,22:31:40:0.550:2	0/1:10,9:32:19:0.474:2	0/1:16,15:31:31:0.484:2	0/1:20,22:31:42:0.524:2	0/1:27,23:31:50:0.460:2	./.	0/1:21,19:30:40:0.475:2	0/1:24,24:31:48:0.500:2
chr2	24400744	rs115212978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:31:58:0.431:2	./.	./.	./.
chr2	24406515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2
chr2	24413298	rs2288073	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,98:33:194:0.505:2	0/1:66,56:31:122:0.459:2	0/1:71,68:32:139:0.489:2	./.	0/1:93,87:31:180:0.483:2	0/1:85,99:33:184:0.538:2	0/1:78,58:33:136:0.426:2	0/1:101,85:32:186:0.457:2
chr2	24431184	rs2303291	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,40:30:84:0.476:2	0/1:51,43:30:94:0.457:2	0/1:32,26:30:58:0.448:2	./.	0/1:67,63:31:130:0.485:2	0/1:33,37:32:70:0.529:2	0/1:42,30:31:72:0.417:2	0/1:41,21:30:62:0.339:2
chr2	24432839	rs2303296	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,49:32:90:0.544:2	0/1:30,39:32:69:0.565:2	0/1:32,35:31:67:0.522:2	./.	0/1:42,48:32:90:0.533:2	0/1:38,46:32:84:0.548:2	0/1:47,36:32:83:0.434:2	0/1:46,49:32:95:0.516:2
chr2	24435610	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.
chr2	24439048	rs3731625	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,33:32:83:0.398:2	0/1:28,26:31:54:0.481:2	./.	./.	./.	./.	0/1:63,53:32:116:0.457:2	./.	0/1:44,62:33:106:0.585:2	./.	./.
chr2	24440857	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:29:81:0.049:2	./.
chr2	24524846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2
chr2	24524958	rs7603997	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,17:32:51:0.333:2	0/1:20,8:32:28:0.286:2	./.	0/1:38,38:32:76:0.500:2	0/1:41,38:31:79:0.481:2	0/1:53,29:30:82:0.354:2	0/1:50,24:32:74:0.324:2	0/1:42,46:32:88:0.523:2	0/1:0,58:33:58:1.00:2	0/1:50,43:32:93:0.462:2	0/1:40,47:32:87:0.540:2
chr2	24531598	rs79087404	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:28:31:0.484:2	./.	./.
chr2	24905927	rs11125744	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,37:33:38:0.974:2	0/1:0,22:32:22:1.00:2	./.	0/1:0,36:33:36:1.00:2	0/1:20,13:32:33:0.394:2	0/1:22,16:32:38:0.421:2	0/1:0,35:33:35:1.00:2	0/1:0,41:33:41:1.00:2	0/1:3,56:33:59:0.949:2	0/1:0,54:33:54:1.00:2	0/1:0,52:32:53:1.00:2
chr2	24920663	rs41281513	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,24:33:66:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr2	24929851	rs3731628	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,56:32:120:0.467:2	./.	./.
chr2	24974945	rs11125763	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:33:157:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,160:33:160:1.00:2	0/1:75,58:32:133:0.436:2	0/1:0,162:32:162:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,149:32:149:1.00:2	0/1:1,152:33:153:0.993:2	0/1:1,167:32:168:0.994:2	0/1:0,170:32:170:1.00:2
chr2	24974958	rs1804645	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,75:31:163:0.460:2	./.	./.	./.	./.	./.	./.	0/1:86,90:29:176:0.511:2
chr2	25022598	rs1550116	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,33:28:68:0.485:2	./.	0/1:36,24:28:60:0.400:2	./.	./.	./.	0/1:32,35:29:67:0.522:2	0/1:46,49:30:95:0.516:2
chr2	25038514	rs141799599	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,48:32:87:0.552:2	./.	./.	./.	./.	./.	./.
chr2	25044462	rs77454507	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,79:32:159:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr2	25046090	rs1127568	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,23:31:50:0.460:2	0/1:18,17:30:35:0.486:2	0/1:1,4:31:5:0.800:2	0/1:35,31:31:66:0.470:2	0/1:38,36:29:74:0.486:2	0/1:1,83:31:84:0.988:2	0/1:48,44:31:92:0.478:2	0/1:0,93:31:93:1.00:2	0/1:1,83:32:84:0.988:2	0/1:44,33:31:77:0.429:2	0/1:0,83:30:83:1.00:2
chr2	25050977	rs7566416	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,39:31:79:0.494:2	0/1:19,20:32:39:0.513:2	./.	0/1:76,43:31:119:0.361:2	0/1:91,75:30:166:0.452:2	0/1:0,92:31:92:1.00:2	0/1:99,72:30:171:0.421:2	0/1:2,122:30:124:0.984:2	0/1:0,91:31:91:1.00:2	0/1:51,49:31:100:0.490:2	0/1:0,81:31:81:1.00:2
chr2	25057769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr2	25063428	rs78927940	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:30:68:0.515:2	./.	./.
chr2	25063429	rs77978025	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:32:68:0.515:2	./.	./.
chr2	25064157	rs2241758	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.
chr2	25064193	rs2241759	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,19:31:32:0.594:2	0/1:15,11:31:26:0.423:2	0/1:0,6:29:6:1.00:2	0/1:25,20:32:45:0.444:2	0/1:22,29:31:51:0.569:2	0/1:13,18:29:31:0.581:2	0/1:26,28:31:54:0.519:2	0/1:2,67:30:69:0.971:2	./.	./.	0/1:0,15:31:15:1.00:2
chr2	25141434	rs61732745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,48:32:106:0.453:2	./.
chr2	25141538	rs11676272	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,31:32:74:0.419:2	0/1:31,22:31:53:0.415:2	./.	0/1:63,52:31:115:0.452:2	0/1:93,73:32:166:0.440:2	0/1:73,54:31:127:0.425:2	0/1:91,75:33:166:0.452:2	0/1:80,71:32:151:0.470:2	0/1:68,53:32:121:0.438:2	0/1:48,49:32:97:0.505:2	0/1:45,52:32:97:0.536:2
chr2	25180825	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	25180826	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	25180827	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	25181488	rs12986502	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	./.	./.
chr2	25190127	rs6749438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,49:33:136:0.360:2	./.	./.
chr2	25194741	rs7593864	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:1,21:31:22:0.955:2	0/1:0,10:31:10:1.00:2	0/1:0,66:31:66:1.00:2	0/1:41,42:31:83:0.506:2	0/1:0,60:30:60:1.00:2	0/1:0,74:31:74:1.00:2	0/1:29,29:31:58:0.500:2	0/1:0,56:32:56:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,32:31:32:1.00:2
chr2	25314186	rs2918630	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,9:32:31:0.290:2	0/1:84,100:33:184:0.543:2	0/1:81,109:32:190:0.574:2	0/1:2,183:33:185:0.989:2	0/1:102,87:33:189:0.460:2	0/1:87,103:32:190:0.542:2	0/1:99,84:33:183:0.459:2	0/1:107,86:32:193:0.446:2	0/1:93,87:33:180:0.483:2
chr2	25354643	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,12:33:190:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr2	25358426	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.	./.	./.
chr2	25359422	rs3731631	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,19:30:36:0.528:2	0/1:13,17:31:30:0.567:2	0/1:0,12:30:12:1.00:2	0/1:49,53:31:102:0.520:2	./.	./.	0/1:61,52:31:113:0.460:2	./.	0/1:46,37:32:83:0.446:2	0/1:27,31:31:58:0.534:2	0/1:32,29:30:61:0.475:2
chr2	25377176	rs2164808	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,28:30:64:0.438:2	0/1:10,20:29:30:0.667:2	0/1:0,10:30:10:1.00:2	0/1:35,27:30:62:0.435:2	./.	0/1:46,41:29:87:0.471:2	0/1:0,71:30:71:1.00:2	0/1:48,34:30:82:0.415:2	0/1:0,59:30:59:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,73:30:73:1.00:2
chr2	25384384	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2
chr2	25462327	rs72810046	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,55:32:127:0.444:2	0/1:53,51:30:104:0.490:2	./.	./.	0/1:47,59:32:106:0.557:2	./.	./.	./.
chr2	25468155	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.
chr2	25469502	rs2276598	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,19:30:33:0.594:2	0/1:12,11:29:23:0.478:2	./.	./.	0/1:1,43:30:44:0.977:2	./.	./.	./.
chr2	25523096	rs143730975	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.	./.	./.	./.
chr2	25536827	rs41284843	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:6,12:32:19:0.667:2	./.
chr2	25602142	rs2304426	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,5:26:5:1.00:2	0/1:27,24:31:51:0.471:2	0/1:34,29:31:63:0.460:2	0/1:0,54:31:54:1.00:2	0/1:46,32:32:78:0.410:2	0/1:0,71:31:71:1.00:2	0/1:37,27:32:64:0.422:2	0/1:20,16:30:36:0.444:2	./.
chr2	25655772	rs7583475	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:28:35:0.400:2	0/1:13,12:29:25:0.480:2	./.	./.	0/1:38,21:29:59:0.356:2	./.	0/1:28,24:30:52:0.462:2	./.	./.	0/1:13,9:31:22:0.409:2	0/1:0,47:30:47:1.00:2
chr2	25965862	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,3:34:44:0.068:2	./.	./.	./.	./.	./.	./.
chr2	25965982	rs62130126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,83:33:164:0.506:2
chr2	25966393	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	25973060	rs33994557	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,92:31:192:0.479:2	./.	./.	./.	./.	./.	0/1:69,78:32:147:0.531:2	./.
chr2	26022277	rs34816614	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,87:33:182:0.478:2	./.	./.	./.	./.	./.	0/1:85,78:33:163:0.479:2	./.
chr2	26177198	rs17047211	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,25:31:55:0.455:2	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	0/1:36,41:31:77:0.532:2	./.	0/1:27,30:30:57:0.526:2	./.	./.
chr2	26203678	rs1465878	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:30:147:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,185:30:185:1.00:2	0/1:1,190:30:191:0.995:2	0/1:0,184:30:184:1.00:2	0/1:1,182:30:183:0.995:2	0/1:0,185:30:185:1.00:2	0/1:0,180:31:180:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,183:29:183:1.00:2
chr2	26204640	rs6721440	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:32:43:1.00:2	0/1:1,31:31:32:0.969:2	./.	0/1:32,33:32:65:0.508:2	0/1:27,35:31:62:0.565:2	0/1:24,45:31:69:0.652:2	0/1:1,51:31:52:0.981:2	./.	0/1:23,29:34:52:0.558:2	0/1:0,30:32:31:1.00:2	./.
chr2	26321526	rs11678157	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,20:30:20:1.00:2	0/1:5,5:30:10:0.500:2	0/1:28,17:30:45:0.378:2	0/1:0,29:29:29:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,47:30:47:1.00:2	0/1:35,32:32:67:0.478:2	0/1:0,51:31:51:1.00:2	0/1:34,41:31:75:0.547:2
chr2	26350787	rs61754189	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,57:33:110:0.518:2	./.	0/1:70,51:32:121:0.421:2
chr2	26399214	rs4665830	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	./.	./.	0/1:12,4:32:16:0.250:2	0/1:0,36:31:36:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,26:31:26:1.00:2	./.
chr2	26417472	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,6:32:76:0.079:2	./.	./.	./.	./.	./.
chr2	26417487	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	./.
chr2	26437996	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:125:0.032:2
chr2	26438001	rs147042247	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:34:113:0.035:2
chr2	26455127	rs11552518	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:30:22:0.318:2	./.	./.	./.	./.	./.	./.	0/1:29,15:31:44:0.341:2
chr2	26462021	rs144414842	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:32:90:0.500:2	./.	./.	./.	./.	./.
chr2	26500013	rs200718690	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:121,16:15:137:0.117:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,13:15:125:0.104:2	0/1:117,20:16:137:0.146:2
chr2	26501528	rs202174966	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:151,14:14:166:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,9:18:152:0.059:2	0/1:132,12:17:145:0.083:2
chr2	26501627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,5:28:175:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr2	26502875	rs1056389	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,17:33:34:0.500:2	0/1:89,90:32:179:0.503:2	./.	./.	./.	./.	./.	./.	0/1:99,99:33:198:0.500:2
chr2	26505858	rs17528590	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,22:33:44:0.500:2	./.	./.	./.	./.	./.	./.	0/1:35,31:33:66:0.470:2
chr2	26507076	rs2303893	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,20:32:51:0.392:2	./.	./.	./.	./.	./.	./.	./.
chr2	26532443	rs72851588	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,20:32:66:0.303:2	./.	./.	./.	./.	./.	./.
chr2	26534322	rs74962505	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,61:30:136:0.449:2	./.	./.	./.	./.	./.	./.
chr2	26534801	rs7568529	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,83:30:84:0.988:2	0/1:2,52:31:54:0.963:2	0/1:0,17:29:17:1.00:2	0/1:72,71:30:143:0.497:2	0/1:83,54:29:137:0.394:2	0/1:0,145:30:145:1.00:2	0/1:0,123:30:123:1.00:2	0/1:2,165:29:167:0.988:2	0/1:1,132:31:133:0.992:2	./.	0/1:76,48:31:125:0.387:2
chr2	26534813	rs111756480	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,53:30:134:0.396:2	./.	./.	./.	./.	./.	./.
chr2	26534872	rs79413730	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,17:31:53:0.321:2	./.	./.	./.	./.	./.	./.
chr2	26535885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,5:34:127:0.039:2
chr2	26536299	rs11886746	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,33:30:82:0.402:2	0/1:0,79:29:79:1.00:2	./.	./.	./.	./.	0/1:0,58:29:58:1.00:2	0/1:37,31:29:69:0.456:2
chr2	26536694	rs2052937	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,7:31:7:1.00:2	0/1:73,43:31:116:0.371:2	0/1:74,60:31:134:0.448:2	0/1:0,82:31:82:1.00:2	0/1:0,147:31:147:1.00:2	0/1:1,111:31:112:0.991:2	0/1:1,103:32:104:0.990:2	./.	0/1:44,34:32:79:0.436:2
chr2	26536727	rs74987785	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,41:30:100:0.410:2	./.	./.	./.	./.	./.	./.
chr2	26569029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.
chr2	26590084	rs6748996	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,39:31:90:0.433:2	0/1:21,22:31:43:0.512:2	0/1:9,5:29:14:0.357:2	0/1:64,53:32:117:0.453:2	0/1:42,26:32:68:0.382:2	./.	0/1:53,49:30:102:0.480:2	./.	./.	0/1:39,33:30:72:0.458:2	0/1:0,75:31:75:1.00:2
chr2	26606154	rs1109465	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,38:33:67:0.567:2	./.	./.	./.	./.	./.	./.	./.
chr2	26607992	rs934280	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:33:53:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,57:32:57:1.00:2
chr2	26647277	rs7423300	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:2,32:29:34:0.941:2	./.	0/1:40,29:30:69:0.420:2	0/1:0,29:31:29:1.00:2	0/1:0,35:30:35:1.00:2	0/1:1,29:31:30:0.967:2	0/1:0,51:29:51:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,60:29:60:1.00:2
chr2	26653457	rs4450561	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,66:32:172:0.384:2	0/1:60,82:31:142:0.577:2	0/1:0,15:32:15:1.00:2	0/1:183,4:32:187:0.021:2	0/1:2,132:32:134:0.985:2	0/1:109,73:31:183:0.401:2	0/1:94,80:31:174:0.460:2	0/1:2,187:32:189:0.989:2	0/1:2,189:32:191:0.990:2	0/1:2,162:32:164:0.988:2	./.
chr2	26667130	rs3795958	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,51:30:95:0.537:2	./.	./.	./.	./.	./.	./.	0/1:64,29:31:93:0.312:2
chr2	26667615	rs939820	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,73:30:73:1.00:2	0/1:1,75:30:76:0.987:2	0/1:0,61:31:61:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,55:31:55:1.00:2
chr2	26676293	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,13:31:64:0.203:2
chr2	26676322	rs1402962	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,57:32:57:1.00:2
chr2	26676395	rs12623642	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,25:32:80:0.313:2	./.	./.	./.	./.	./.	./.	./.
chr2	26679362	rs35313480	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,92:32:192:0.479:2	./.	./.	./.
chr2	26679394	rs1054737	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:30:17:0.706:2	./.	0/1:102,77:31:179:0.430:2	./.	./.	./.	./.	0/1:69,57:31:128:0.452:2	./.
chr2	26683777	rs45442103	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,64:31:151:0.427:2	./.	./.	./.
chr2	26693967	rs2272072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:33:35:0.371:2	./.	./.	./.	./.	./.	./.	./.
chr2	26696374	rs56054534	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:35:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	26699126	rs4335905	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,13:32:28:0.464:2	0/1:5,6:31:11:0.545:2	./.	0/1:0,35:32:35:1.00:2	./.	./.	0/1:16,11:29:27:0.407:2	./.	0/1:25,10:31:35:0.286:2	./.	0/1:0,22:31:22:1.00:2
chr2	26699855	rs2272069	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,34:31:63:0.540:2	0/1:27,14:33:41:0.341:2	./.	0/1:0,89:32:89:1.00:2	./.	./.	0/1:84,81:32:165:0.491:2	./.	0/1:32,25:33:57:0.439:2	./.	0/1:0,47:32:47:1.00:2
chr2	26700084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.
chr2	26700309	rs80356592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,69:30:127:0.543:2	./.	./.
chr2	26700700	rs4665855	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,44:32:92:0.478:2	0/1:36,37:32:73:0.507:2	0/1:3,4:31:7:0.571:2	0/1:1,140:32:141:0.993:2	./.	./.	0/1:75,62:32:137:0.453:2	0/1:154,7:33:161:0.043:2	0/1:91,72:33:163:0.442:2	./.	0/1:0,139:32:139:1.00:2
chr2	26702409	rs61746988	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,55:31:99:0.556:2
chr2	26702508	rs72853741	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,28:29:47:0.596:2	./.	./.	./.	./.	./.
chr2	26703734	rs55676840	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,68:29:166:0.410:2	./.	./.	./.	./.	./.	./.
chr2	26712561	rs41288779	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,47:31:138:0.341:2	./.
chr2	26739423	rs11687696	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,3:26:12:0.250:2	0/1:0,26:30:26:1.00:2	./.	./.	./.	./.	./.
chr2	26741961	rs13031859	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,30:33:58:0.517:2	0/1:29,18:33:47:0.383:2	0/1:7,3:33:10:0.300:2	0/1:39,52:33:91:0.571:2	0/1:51,53:32:104:0.510:2	./.	./.	0/1:56,48:33:104:0.462:2	0/1:0,98:34:98:1.00:2	./.	0/1:0,72:33:72:1.00:2
chr2	26798893	rs13002673	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,35:31:84:0.417:2	0/1:76,53:30:130:0.411:2	0/1:54,38:30:92:0.413:2	0/1:94,65:31:159:0.409:2	./.	0/1:41,38:32:79:0.481:2	0/1:44,32:31:76:0.421:2	./.
chr2	26798927	rs112873448	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,60:29:109:0.550:2	./.	./.	./.	./.	./.	./.
chr2	26799031	rs2272464	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,19:31:44:0.432:2	0/1:35,24:31:59:0.407:2	0/1:26,21:32:47:0.447:2	0/1:30,36:32:66:0.545:2	./.	0/1:24,11:33:35:0.314:2	0/1:26,20:30:46:0.435:2	./.
chr2	26800422	rs1053807	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,22:33:53:0.415:2	0/1:10,13:32:23:0.565:2	0/1:8,5:32:13:0.385:2	0/1:41,37:33:78:0.474:2	0/1:44,53:32:97:0.546:2	0/1:40,36:32:76:0.474:2	0/1:45,43:32:88:0.489:2	0/1:65,47:32:112:0.420:2	0/1:24,33:33:57:0.579:2	./.	0/1:31,21:33:52:0.404:2
chr2	26804218	rs935171	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:29:14:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,22:29:22:1.00:2
chr2	26804247	rs935172	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:29:15:1.00:2	0/1:0,12:30:12:1.00:2	./.	./.	0/1:10,14:29:24:0.583:2	0/1:14,27:30:41:0.659:2	0/1:0,24:30:24:1.00:2	0/1:14,10:29:24:0.417:2	./.	0/1:0,19:29:19:1.00:2	0/1:18,11:31:29:0.379:2
chr2	26806717	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.
chr2	26846282	rs1615551	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:32:53:0.434:2	0/1:20,15:31:35:0.429:2	0/1:2,6:32:8:0.750:2	0/1:37,30:32:67:0.448:2	0/1:1,38:31:39:0.974:2	0/1:32,22:32:54:0.407:2	0/1:18,25:32:43:0.581:2	0/1:27,29:31:56:0.518:2	0/1:41,34:33:75:0.453:2	./.	./.
chr2	26846436	rs186918721	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,44:31:101:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr2	27157489	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2
chr2	27167617	rs41288789	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:31:50:0.460:2	0/1:10,8:29:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27169842	rs11126784	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,90:30:91:1.00:2	0/1:0,49:31:49:1.00:2	0/1:9,11:31:20:0.550:2	./.	./.	0/1:68,64:30:132:0.485:2	0/1:0,144:30:144:1.00:2	0/1:0,139:30:139:1.00:2	0/1:1,119:31:120:0.992:2	0/1:0,86:30:86:1.00:2	0/1:0,99:30:99:1.00:2
chr2	27246285	rs10865456	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,56:31:56:1.00:2	0/1:1,62:32:63:0.984:2	0/1:0,28:32:28:1.00:2	0/1:0,49:32:50:1.00:2
chr2	27260469	rs1124649	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:32:17:0.471:2	0/1:2,135:31:137:0.985:2	0/1:0,93:31:93:1.00:2	./.	./.	0/1:80,45:31:125:0.360:2	./.	./.	./.
chr2	27261329	rs11690454	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,53:34:53:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,42:32:42:1.00:2
chr2	27262623	rs374406887	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,80:33:165:0.485:2
chr2	27290525	rs11681145	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,69:28:71:0.972:2	0/1:1,45:29:46:0.978:2	0/1:5,11:31:16:0.688:2	./.	./.	0/1:1,100:29:101:0.990:2	0/1:1,102:29:103:0.990:2	0/1:77,48:29:125:0.384:2	0/1:0,109:30:109:1.00:2	0/1:0,74:29:74:1.00:2	0/1:1,94:28:95:0.989:2
chr2	27303755	rs2736976	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:28:13:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,4:25:4:1.00:2
chr2	27308546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:32:73:0.082:2	./.	./.	./.	./.	./.
chr2	27315252	rs2304681	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,37:30:37:1.00:2	0/1:0,88:31:88:1.00:2	./.	0/1:99,5:32:104:0.048:2	0/1:40,37:31:77:0.481:2	./.	./.	./.
chr2	27317792	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27324289	rs1057393	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:33:39:0.077:2	./.	./.	./.	./.
chr2	27324303	rs113949888	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:30:27:0.111:2	./.	./.	./.	./.
chr2	27324320	rs111421729	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:33:25:0.120:2	./.	./.	./.	./.
chr2	27324340	rs11893427	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:32:13:0.385:2	0/1:9,6:32:15:0.400:2	./.	./.	0/1:12,4:22:16:0.250:2	0/1:6,7:33:13:0.538:2	0/1:15,5:31:20:0.250:2	0/1:13,4:34:17:0.235:2	./.	0/1:14,6:29:20:0.300:2	0/1:17,3:34:20:0.150:2
chr2	27324354	rs1057391	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:30:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:28:21:0.190:2	./.
chr2	27324669	rs61753362	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,28:32:50:0.560:2	./.	./.	./.	./.	./.	./.	./.
chr2	27324724	rs2384571	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,16:28:16:1.00:2	./.	0/1:26,3:32:29:0.103:2	./.	0/1:0,28:29:28:1.00:2	0/1:0,29:28:29:1.00:2	0/1:13,19:29:32:0.594:2	0/1:0,21:29:21:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,21:27:21:1.00:2
chr2	27324751	rs2384572	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:13,3:32:16:0.188:2	./.	0/1:0,21:29:21:1.00:2	0/1:1,14:29:15:0.933:2	0/1:6,11:29:17:0.647:2	0/1:0,10:31:10:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,11:30:11:1.00:2
chr2	27351948	rs6715286	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,40:34:40:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,40:33:40:1.00:2
chr2	27353507	rs2304678	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,58:32:115:0.504:2	0/1:81,67:32:148:0.453:2	./.	./.	0/1:107,57:32:164:0.348:2	./.	./.	0/1:60,53:32:114:0.469:2
chr2	27355991	rs2289358	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,46:29:113:0.407:2	./.	./.	0/1:54,48:30:102:0.471:2	./.	./.	./.
chr2	27356548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.
chr2	27361103	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,5:35:48:0.104:2
chr2	27361246	rs2304680	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,50:31:90:0.556:2	./.	./.	0/1:69,50:31:119:0.420:2	./.	./.	./.
chr2	27361418	rs62128708	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,88:31:172:0.515:2	0/1:45,49:31:94:0.521:2	./.	./.	./.	0/1:92,94:30:186:0.505:2	./.	./.	./.	./.	./.
chr2	27423913	rs61737373	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,50:31:101:0.495:2	./.	./.	0/1:67,55:32:122:0.451:2	./.	./.
chr2	27424636	rs1395	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:31:98:1.00:2	0/1:0,74:31:74:1.00:2	0/1:1,21:31:22:0.955:2	0/1:96,78:30:174:0.448:2	0/1:0,169:31:169:1.00:2	0/1:98,88:31:186:0.473:2	0/1:96,69:31:165:0.418:2	0/1:0,183:31:184:1.00:2	0/1:104,78:32:182:0.429:2	0/1:0,157:31:157:1.00:2	0/1:1,142:31:143:0.993:2
chr2	27426174	rs138663654	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,21:33:47:0.447:2	0/1:14,12:32:26:0.462:2	./.	./.	./.	./.	0/1:40,23:32:63:0.365:2	./.	./.	./.	./.
chr2	27428295	rs1275524	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:29:98:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,120:29:121:1.00:2	0/1:1,158:30:159:0.994:2	0/1:0,115:29:115:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,133:29:133:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,97:29:97:1.00:2
chr2	27428877	rs1275527	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:33:106:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,138:31:138:1.00:2	0/1:85,59:32:144:0.410:2	0/1:0,174:32:174:1.00:2	0/1:1,151:32:152:0.993:2	0/1:90,70:33:160:0.438:2	0/1:1,121:33:122:0.992:2	0/1:0,116:33:116:1.00:2
chr2	27430237	rs56970590	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,74:32:147:0.503:2	./.	./.	0/1:97,56:32:153:0.366:2	./.	./.
chr2	27435250	rs1275533	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,34:31:34:1.00:2
chr2	27438615	rs11556165	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,21:32:45:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr2	27439453	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:30:183:0.027:2	./.	./.	./.	./.	./.
chr2	27439751	rs7437	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,71:30:144:0.493:2	./.	./.	0/1:79,51:31:130:0.392:2	./.	./.
chr2	27440785	rs1275536	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,120:32:121:0.992:2	0/1:0,111:32:111:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,125:32:125:1.00:2
chr2	27445518	rs60463044	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:33:58:0.500:2	./.	./.	0/1:13,12:34:25:0.480:2	./.	./.
chr2	27446888	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.
chr2	27456350	rs137930730	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:30:44:0.500:2	./.
chr2	27456638	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr2	27460968	rs1141313	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,59:30:132:0.447:2	./.	0/1:75,46:29:121:0.380:2	0/1:87,87:29:174:0.500:2	./.	0/1:61,71:31:132:0.538:2	./.	./.
chr2	27461936	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr2	27462076	rs3739092	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,23:32:50:0.460:2	./.	./.	0/1:22,31:32:53:0.585:2	./.	./.	./.	./.
chr2	27462218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.
chr2	27462651	rs61741874	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:33:46:0.500:2	./.	./.	0/1:31,25:34:56:0.446:2	./.	./.
chr2	27505758	rs33994928	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:32:100:0.440:2	./.	0/1:4,89:32:93:0.957:2
chr2	27550967	rs1049817	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,45:33:114:0.395:2	./.	0/1:74,49:32:123:0.398:2	0/1:74,37:33:112:0.333:2	./.	./.	0/1:55,37:33:92:0.402:2	./.
chr2	27558210	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.
chr2	27558252	rs11684134	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,67:33:128:0.523:2	./.	0/1:67,67:32:134:0.500:2	0/1:57,68:31:125:0.544:2	./.	0/1:80,47:33:128:0.370:2	0/1:52,72:33:124:0.581:2	./.
chr2	27587447	rs148810263	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,44:32:82:0.537:2	./.	./.	./.
chr2	27587724	rs1058065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:31:93:0.419:2	./.	./.	./.	./.	./.
chr2	27590666	rs41288829	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,45:32:105:0.429:2	0/1:30,33:31:63:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27594142	rs147740391	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:33:64:0.500:2	./.	./.
chr2	27597951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,5:32:72:0.069:2	./.	./.	./.	./.	./.	./.
chr2	27601612	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.
chr2	27601656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.
chr2	27665518	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27665531	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27667297	rs11541994	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:26:16:0.313:2	./.	0/1:8,6:29:14:0.429:2	0/1:9,9:29:18:0.500:2	./.	./.	0/1:11,7:26:18:0.389:2	./.
chr2	27668687	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,6:30:113:0.053:2	./.	./.	./.	./.	./.	./.
chr2	27670409	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.
chr2	27676287	rs56076827	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,42:33:100:0.420:2	./.	0/1:44,39:32:83:0.470:2	0/1:42,33:32:75:0.440:2	./.	./.	0/1:40,37:33:77:0.481:2	./.
chr2	27682276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.
chr2	27712538	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27715595	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.
chr2	27717447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.	./.
chr2	27730940	rs1260326	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:29:15:0.400:2	0/1:0,108:27:109:1.00:2	0/1:0,100:26:100:1.00:2	0/1:0,123:28:123:1.00:2	0/1:58,60:27:120:0.508:2	./.	0/1:61,56:28:117:0.479:2	0/1:0,81:28:81:1.00:2	./.
chr2	27745373	rs8179249	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:30:54:0.481:2	./.	./.	./.
chr2	27789861	rs965813	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,24:32:49:0.490:2	0/1:20,21:30:41:0.512:2	0/1:19,22:31:41:0.537:2	./.	./.	0/1:24,23:32:47:0.489:2	0/1:20,14:30:34:0.412:2	./.
chr2	27799643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.
chr2	27801403	rs1919125	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,79:33:156:0.506:2	0/1:53,42:32:95:0.442:2	0/1:0,17:33:17:1.00:2	0/1:112,52:33:164:0.317:2	0/1:94,57:32:151:0.377:2	0/1:98,72:32:170:0.424:2	0/1:77,46:32:123:0.374:2	0/1:3,188:32:191:0.984:2	0/1:4,174:33:178:0.978:2	0/1:78,62:33:140:0.443:2	0/1:0,188:33:188:1.00:2
chr2	27801418	rs1919126	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,77:32:152:0.507:2	0/1:56,41:32:97:0.423:2	0/1:0,17:31:17:1.00:2	0/1:106,54:32:160:0.338:2	0/1:95,52:32:147:0.354:2	0/1:101,70:31:171:0.409:2	0/1:75,42:32:117:0.359:2	0/1:4,171:32:175:0.977:2	0/1:3,168:32:171:0.982:2	0/1:75,56:32:131:0.427:2	0/1:0,176:32:176:1.00:2
chr2	27801493	rs1919127	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,50:30:97:0.515:2	0/1:29,15:28:44:0.341:2	0/1:5,5:28:10:0.500:2	./.	./.	./.	0/1:29,30:29:60:0.508:2	0/1:1,83:29:85:0.988:2	0/1:59,36:31:95:0.379:2	./.	0/1:1,84:28:85:0.988:2
chr2	27801759	rs1919128	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,24:33:56:0.429:2	0/1:19,28:32:47:0.596:2	0/1:1,4:33:5:0.800:2	./.	./.	./.	0/1:10,13:33:23:0.565:2	0/1:0,54:32:54:1.00:2	0/1:36,29:34:65:0.446:2	./.	0/1:0,78:33:78:1.00:2
chr2	27802805	rs3811644	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:32:13:0.538:2	0/1:35,30:33:65:0.462:2	0/1:42,33:32:75:0.440:2	0/1:60,46:32:106:0.434:2	./.	./.	0/1:68,54:33:122:0.443:2	0/1:60,37:33:97:0.381:2	./.
chr2	27802920	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.
chr2	27803691	rs368798497	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2
chr2	27804432	rs28381983	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,13:32:41:0.317:2	0/1:11,10:33:21:0.476:2	0/1:0,3:31:3:1.00:2	0/1:21,17:31:38:0.447:2	0/1:28,16:32:44:0.364:2	0/1:30,9:32:39:0.231:2	0/1:17,14:33:31:0.452:2	0/1:0,46:33:46:1.00:2	0/1:1,34:33:35:0.971:2	0/1:13,17:31:30:0.567:2	0/1:0,27:33:27:1.00:2
chr2	27806003	rs190771676	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:32:69:0.087:2
chr2	27838058	rs11127071	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,56:30:90:0.622:2	0/1:33,24:31:57:0.421:2	0/1:0,13:30:13:1.00:2	0/1:50,78:30:128:0.609:2	0/1:17,37:30:54:0.685:2	0/1:45,60:30:105:0.571:2	0/1:29,38:30:67:0.567:2	0/1:0,83:31:83:1.00:2	0/1:0,140:31:141:1.00:2	0/1:60,35:30:95:0.368:2	0/1:0,122:30:122:1.00:2
chr2	27850236	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:28:138:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27850344	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.
chr2	27851615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.
chr2	27851918	rs3749147	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,32:31:68:0.471:2	0/1:16,22:31:38:0.579:2	./.	./.	./.	./.	0/1:31,43:29:74:0.581:2	0/1:1,57:30:58:0.983:2	0/1:21,39:32:60:0.650:2	./.	0/1:1,43:31:44:0.977:2
chr2	27853899	rs183551437	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27854721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2
chr2	27862909	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.
chr2	27887034	rs9678851	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,21:31:44:0.488:2	0/1:15,11:32:26:0.423:2	./.	0/1:32,27:30:59:0.458:2	0/1:28,33:30:61:0.541:2	0/1:14,31:30:45:0.689:2	0/1:22,21:31:43:0.488:2	./.	0/1:22,15:29:37:0.405:2	0/1:15,27:29:42:0.643:2	0/1:0,63:30:63:1.00:2
chr2	27905215	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.
chr2	27905222	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:34:79:0.051:2	./.	./.	./.
chr2	27930519	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2
chr2	27930837	rs4665385	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:28:21:0.429:2	./.	0/1:4,18:29:22:0.818:2	./.	./.	./.	0/1:7,7:28:14:0.500:2	./.
chr2	27931209	rs181640002	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,23:33:50:0.460:2	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	0/1:35,22:32:57:0.386:2	./.	./.	./.	./.
chr2	27931323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.	./.
chr2	28081433	rs184414342	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,9:32:31:0.290:2	./.	./.	./.	./.	./.	./.
chr2	28113157	rs113651030	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:33:69:0.412:2	./.	./.	./.
chr2	28634790	rs12624279	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,39:32:74:0.527:2	0/1:27,30:32:57:0.526:2	./.	0/1:59,62:31:121:0.512:2	0/1:61,45:31:106:0.425:2	0/1:1,122:31:123:0.992:2	./.	./.	./.	./.	./.
chr2	28748838	rs72792970	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,45:31:140:0.321:2	./.
chr2	28761981	rs6753929	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,39:32:109:0.358:2	./.	0/1:112,57:33:169:0.337:2	./.	./.	./.
chr2	28763230	rs79986357	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,17:31:35:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr2	28789643	rs10186460	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:49,37:32:86:0.430:2	0/1:25,17:31:42:0.405:2	0/1:10,3:32:13:0.231:2	./.	./.	0/1:76,38:31:114:0.333:2	0/1:62,52:32:114:0.456:2	0/1:81,45:31:126:0.357:2	0/1:0,92:33:92:1.00:2	./.	0/1:2,90:32:92:0.978:2
chr2	28804962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.
chr2	28814033	rs11681826	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,43:29:79:0.544:2	0/1:24,16:30:40:0.400:2	./.	0/1:74,37:28:111:0.333:2	./.	./.	./.	0/1:89,63:29:152:0.414:2	./.	./.	0/1:39,36:28:75:0.480:2
chr2	28814548	rs12464271	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,16:30:38:0.421:2	./.	./.	0/1:15,17:30:32:0.531:2	./.	./.	./.	0/1:27,9:29:36:0.250:2	./.	./.	0/1:18,20:31:38:0.526:2
chr2	28821613	rs35746006	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,47:33:90:0.522:2	./.	./.
chr2	28824793	rs7601771	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,46:31:89:0.517:2	0/1:33,33:32:66:0.500:2	./.	0/1:66,50:33:116:0.431:2	0/1:2,92:32:94:0.979:2	./.	0/1:84,44:32:128:0.344:2	0/1:102,72:33:174:0.414:2	0/1:88,65:33:153:0.425:2	0/1:68,42:33:110:0.382:2	0/1:63,46:33:109:0.422:2
chr2	28827533	rs146023795	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	0/1:70,61:31:131:0.466:2	./.	./.	./.	./.	./.
chr2	28827625	rs34289907	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,68:32:163:0.417:2	./.	./.
chr2	28841245	rs201645442	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	0/1:12,4:33:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	28854958	rs2199619	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,43:32:98:0.439:2	0/1:33,25:31:58:0.431:2	./.	0/1:74,52:31:126:0.413:2	0/1:88,58:31:146:0.397:2	./.	./.	0/1:87,75:32:162:0.463:2	./.	./.	0/1:63,39:32:102:0.382:2
chr2	28855840	rs3752902	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,28:32:100:0.280:2	./.	0/1:66,51:32:117:0.436:2	./.	./.	./.	./.
chr2	28855865	rs370874715	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,43:31:84:0.512:2
chr2	28865760	rs2272387	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,35:32:65:0.538:2	0/1:15,24:31:39:0.615:2	./.	0/1:40,43:32:83:0.518:2	0/1:0,46:31:46:1.00:2	./.	0/1:46,26:32:72:0.361:2	0/1:58,41:32:99:0.414:2	0/1:40,29:32:69:0.420:2	./.	0/1:36,32:32:68:0.471:2
chr2	29001216	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:34:56:0.071:2	./.	./.
chr2	29001691	rs1128416	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,16:33:36:0.444:2	0/1:5,11:33:16:0.688:2	0/1:0,2:35:2:1.00:2	./.	0/1:11,15:32:26:0.577:2	0/1:11,11:31:22:0.500:2	0/1:0,19:33:19:1.00:2	0/1:16,15:33:31:0.484:2	0/1:22,27:34:49:0.551:2	./.	0/1:40,18:32:58:0.310:2
chr2	29045243	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,4:33:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr2	29092646	rs143187215	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:31:68:0.471:2	./.	./.
chr2	29092679	rs4233729	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,25:32:62:0.403:2	0/1:28,9:32:37:0.243:2	./.	0/1:2,42:32:44:0.955:2	0/1:15,14:33:29:0.483:2	0/1:22,28:32:50:0.560:2	./.	0/1:43,18:33:62:0.295:2	0/1:33,40:34:73:0.548:2	./.	0/1:33,50:31:83:0.602:2
chr2	29092850	rs4666122	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,20:29:53:0.377:2	0/1:10,12:28:22:0.545:2	./.	0/1:2,40:30:43:0.952:2	0/1:26,24:29:51:0.480:2	0/1:26,21:28:47:0.447:2	./.	0/1:31,21:29:52:0.404:2	0/1:30,22:29:52:0.423:2	./.	0/1:31,22:29:53:0.415:2
chr2	29093121	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,20:32:30:0.667:2	./.	./.
chr2	29124938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.
chr2	29129418	rs11688605	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,28:32:85:0.329:2	0/1:14,12:33:26:0.462:2	./.	./.	./.	0/1:59,31:33:90:0.344:2	./.	0/1:68,44:32:112:0.393:2	0/1:47,29:33:76:0.382:2	./.	./.
chr2	29135468	rs6715296	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,148:32:148:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:0,132:31:133:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,167:32:167:1.00:2	0/1:118,75:32:193:0.389:2	0/1:0,192:33:193:1.00:2	0/1:0,191:32:191:1.00:2	0/1:94,92:31:186:0.495:2
chr2	29152456	rs1140697	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,55:32:100:0.550:2	0/1:17,27:32:44:0.614:2	0/1:0,5:33:5:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,76:32:76:1.00:2	0/1:63,76:32:139:0.547:2	0/1:0,92:33:92:1.00:2	0/1:58,43:33:101:0.426:2	0/1:67,69:34:136:0.507:2	0/1:0,84:33:84:1.00:2	0/1:73,70:34:144:0.490:2
chr2	29169612	rs3087649	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:32:18:1.00:2	0/1:0,20:33:20:1.00:2	./.	./.	0/1:0,15:31:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,11:33:11:1.00:2	0/1:2,4:32:6:0.667:2	0/1:0,11:34:11:1.00:2	0/1:0,14:31:14:1.00:2	0/1:6,14:33:20:0.700:2
chr2	29221040	rs72786173	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,61:31:117:0.521:2	./.	./.	./.	./.	./.	0/1:43,52:31:96:0.547:2
chr2	29222070	rs13009279	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:31:58:1.00:2	./.	./.	0/1:42,20:30:62:0.323:2	0/1:2,85:31:87:0.977:2	./.	./.	./.
chr2	29225502	rs72786178	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,16:28:34:0.471:2	0/1:14,11:28:25:0.440:2	./.	./.	./.	0/1:31,26:30:57:0.456:2	./.	./.	./.	./.	./.
chr2	29225504	rs72786179	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,17:32:35:0.486:2	0/1:15,11:30:26:0.423:2	./.	./.	./.	0/1:29,26:32:55:0.473:2	./.	./.	./.	./.	./.
chr2	29226498	rs12613325	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,43:31:89:0.483:2	0/1:30,23:30:53:0.434:2	0/1:7,7:31:14:0.500:2	0/1:0,119:30:119:1.00:2	0/1:0,99:31:99:1.00:2	0/1:73,51:29:124:0.411:2	0/1:0,101:30:101:1.00:2	0/1:4,113:30:117:0.966:2	0/1:78,56:32:134:0.418:2	0/1:0,94:31:94:1.00:2	0/1:54,46:31:100:0.460:2
chr2	29226512	rs12623297	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,82:30:82:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,87:30:87:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,92:30:92:1.00:2	0/1:2,101:29:104:0.981:2	0/1:74,47:30:121:0.388:2	0/1:0,79:30:79:1.00:2	0/1:55,39:30:94:0.415:2
chr2	29240060	rs11127202	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,140:30:141:0.993:2	./.	./.	./.	0/1:1,157:30:158:0.994:2	./.	./.	./.
chr2	29240673	rs35166194	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,190:32:191:0.995:2	./.	./.	./.	0/1:2,185:32:187:0.989:2	./.	./.	./.
chr2	29240686	rs34261417	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,178:32:180:0.989:2	./.	./.	./.	0/1:2,188:32:190:0.989:2	./.	./.	./.
chr2	29240783	rs1109758	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,14:30:46:0.304:2	0/1:10,16:27:26:0.615:2	0/1:1,2:31:3:0.667:2	0/1:1,35:29:36:0.972:2	./.	0/1:27,22:30:49:0.449:2	./.	0/1:1,38:30:39:0.974:2	./.	./.	./.
chr2	29245951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:35:168:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	29246044	rs6721861	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,58:27:120:0.483:2	0/1:39,32:28:71:0.451:2	0/1:10,8:30:18:0.444:2	./.	0/1:87,66:27:153:0.431:2	0/1:75,59:28:134:0.440:2	0/1:94,74:28:168:0.440:2	./.	0/1:72,48:29:120:0.400:2	0/1:63,53:28:117:0.457:2	0/1:59,49:28:108:0.454:2
chr2	29247100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr2	29249839	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.
chr2	29256374	rs60403047	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,46:32:104:0.442:2	0/1:25,27:33:52:0.519:2	./.	./.	./.	0/1:79,86:32:165:0.521:2	./.	./.	./.	./.	./.
chr2	29259543	rs72788155	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,77:33:152:0.507:2	./.	./.	./.	./.	./.
chr2	29274720	rs895591	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:29:55:0.481:2	0/1:20,22:30:42:0.524:2	0/1:0,7:32:7:1.00:2	0/1:44,60:30:104:0.577:2	0/1:57,55:30:112:0.491:2	0/1:0,97:30:97:1.00:2	./.	0/1:61,50:30:112:0.450:2	./.	0/1:0,73:29:73:1.00:2	./.
chr2	29274730	rs7577483	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:28:50:0.480:2	0/1:17,18:30:35:0.514:2	./.	./.	./.	0/1:47,38:27:85:0.447:2	./.	./.	./.	./.	./.
chr2	29287803	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.
chr2	29294239	rs144569618	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:32:51:0.569:2	./.
chr2	29294629	rs34253433	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,41:30:76:0.539:2	0/1:14,24:31:38:0.632:2	./.	0/1:53,42:30:96:0.442:2	0/1:42,29:29:71:0.408:2	./.	./.	0/1:52,38:31:90:0.422:2	0/1:2,90:31:92:0.978:2	0/1:43,34:30:77:0.442:2	0/1:34,37:31:72:0.521:2
chr2	29294754	rs17744093	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,35:33:70:0.500:2	0/1:25,18:32:43:0.419:2	./.	0/1:46,28:32:74:0.378:2	0/1:27,15:31:42:0.357:2	./.	./.	0/1:40,32:32:72:0.444:2	0/1:0,72:33:72:1.00:2	0/1:30,32:32:62:0.516:2	0/1:41,25:33:66:0.379:2
chr2	29295016	rs10200693	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,73:30:139:0.525:2	0/1:39,38:29:77:0.494:2	./.	0/1:85,68:30:153:0.444:2	0/1:88,70:29:158:0.443:2	./.	./.	0/1:81,74:30:155:0.477:2	0/1:2,142:30:144:0.986:2	0/1:75,88:29:163:0.540:2	0/1:87,79:30:166:0.476:2
chr2	29295045	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.
chr2	29295186	rs75276619	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:30:43:0.372:2	./.	./.	./.	./.	./.	./.
chr2	29295334	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:32:59:0.508:2
chr2	29295676	rs13385188	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,58:32:121:0.479:2	0/1:72,64:31:136:0.471:2	./.	0/1:77,88:31:165:0.533:2	0/1:67,59:30:126:0.468:2	./.	./.	0/1:75,87:31:162:0.537:2	0/1:1,167:32:168:0.994:2	0/1:62,64:31:126:0.508:2	0/1:80,62:31:142:0.437:2
chr2	29296870	rs62132765	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,71:32:187:0.380:2	0/1:96,67:32:163:0.411:2	./.	0/1:113,84:31:197:0.426:2	0/1:103,83:31:186:0.446:2	./.	./.	0/1:121,78:31:199:0.392:2	0/1:1,194:32:195:0.995:2	0/1:88,88:31:176:0.500:2	0/1:91,78:32:169:0.462:2
chr2	29297068	rs35929540	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,29:32:55:0.527:2	0/1:13,25:32:38:0.658:2	./.	0/1:45,18:31:63:0.286:2	0/1:27,25:30:52:0.481:2	./.	./.	0/1:48,31:30:79:0.392:2	0/1:0,50:32:50:1.00:2	0/1:26,16:31:42:0.381:2	0/1:27,44:32:71:0.620:2
chr2	29356567	rs17749904	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	29356669	rs3100232	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,33:31:33:1.00:2	./.	0/1:33,16:32:49:0.327:2	0/1:0,34:31:34:1.00:2	0/1:43,28:30:71:0.394:2	./.	0/1:1,53:30:54:0.981:2	0/1:0,58:30:58:1.00:2	0/1:40,16:30:56:0.286:2	0/1:45,35:30:80:0.438:2
chr2	29366646	rs35024908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,52:31:119:0.437:2	./.	./.	./.	./.	./.	./.
chr2	29383256	rs3100246	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,24:32:53:0.453:2	0/1:23,18:33:41:0.439:2	./.	0/1:33,39:32:72:0.542:2	0/1:27,14:32:41:0.341:2	./.	./.	0/1:38,22:32:60:0.367:2	0/1:4,82:33:86:0.953:2	0/1:39,33:32:72:0.458:2	0/1:50,37:31:87:0.425:2
chr2	29416366	rs1881421	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	0/1:90,73:32:163:0.448:2	0/1:119,66:32:185:0.357:2	./.	./.	./.	0/1:107,89:33:196:0.454:2	./.
chr2	29416481	rs1881420	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,76:33:170:0.447:2	./.	./.	./.	0/1:79,106:33:185:0.573:2	./.
chr2	29416572	rs1670283	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,97:31:97:1.00:2
chr2	29416615	rs56132472	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:36,23:29:59:0.390:2	./.	./.	./.	./.	./.	./.
chr2	29444076	rs1534545	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,74:30:132:0.561:2	./.	./.	./.	0/1:70,59:30:129:0.457:2	./.
chr2	29444095	rs1569156	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,77:31:77:1.00:2	0/1:1,80:30:81:0.988:2	0/1:0,97:31:97:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,86:31:86:1.00:2
chr2	29445458	rs3795850	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,21:31:58:0.362:2	./.	./.	./.	0/1:34,15:32:50:0.306:2	./.
chr2	29448410	rs200992945	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,11:24:53:0.208:2	./.	0/1:24,9:27:33:0.273:2	0/1:39,10:26:49:0.204:2	0/1:34,8:24:42:0.190:2	0/1:32,5:25:37:0.135:2	./.
chr2	29449819	rs2293563	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,42:32:103:0.408:2	0/1:25,23:32:50:0.479:2	0/1:12,12:33:24:0.500:2	0/1:72,77:33:149:0.517:2	./.	./.	0/1:79,114:32:193:0.591:2	./.	0/1:98,64:33:162:0.395:2	./.	0/1:44,61:33:105:0.581:2
chr2	29455267	rs2256740	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:29:50:0.980:2	0/1:0,22:30:22:1.00:2	0/1:4,4:30:8:0.500:2	0/1:39,37:31:76:0.487:2	./.	0/1:0,65:31:65:1.00:2	0/1:2,83:30:85:0.976:2	0/1:53,23:30:76:0.303:2	0/1:0,81:31:81:1.00:2	0/1:33,31:31:64:0.484:2	0/1:32,25:30:57:0.439:2
chr2	29497967	rs35228363	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:71,75:30:146:0.514:2	0/1:42,23:31:66:0.354:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:30:89:0.472:2	./.
chr2	29543663	rs2293564	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:106:1.00:2	0/1:0,67:31:67:1.00:2	0/1:11,4:32:15:0.267:2	0/1:92,81:32:173:0.468:2	./.	0/1:113,71:31:184:0.386:2	0/1:4,175:32:179:0.978:2	0/1:0,164:32:164:1.00:2	0/1:0,146:33:146:1.00:2	0/1:0,126:32:126:1.00:2	0/1:1,136:32:137:0.993:2
chr2	29543699	rs56165377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,61:32:119:0.513:2	./.
chr2	29754862	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.
chr2	29940529	rs2246745	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:31:146:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,16:31:16:1.00:2	0/1:105,81:31:186:0.435:2	0/1:0,149:31:149:1.00:2	0/1:0,184:31:184:1.00:2	0/1:1,141:31:142:0.993:2	0/1:2,174:32:176:0.989:2	0/1:1,180:32:181:0.994:2	0/1:115,73:31:188:0.388:2	0/1:0,177:31:177:1.00:2
chr2	30143499	rs4358080	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	30381505	rs1137288	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,88:30:90:0.978:2	0/1:0,83:30:83:1.00:2	./.	./.	./.	0/1:70,56:30:126:0.444:2	0/1:68,75:29:143:0.524:2	0/1:72,98:30:170:0.576:2	0/1:72,79:31:151:0.523:2	./.	./.
chr2	30454631	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.	./.
chr2	30863092	rs12467646	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,37:31:79:0.468:2	./.	./.	0/1:1,61:32:62:0.984:2	./.	./.	./.	./.
chr2	30863108	rs12471868	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:33:78:0.474:2	./.	./.	0/1:2,67:33:69:0.971:2	./.	./.	./.	./.
chr2	30957326	rs2276568	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,29:32:80:0.363:2	0/1:24,15:33:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	30957344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.
chr2	30959366	rs11889549	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:33:9:0.778:2	./.	./.	./.	./.	./.	0/1:44,19:33:63:0.302:2	./.	./.
chr2	30975961	rs62142192	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,52:31:119:0.437:2	./.	./.	./.	0/1:0,112:32:112:1.00:2	./.
chr2	30976058	rs2926304	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,33:33:65:0.508:2	0/1:10,23:32:33:0.697:2	./.	0/1:41,14:32:55:0.255:2	./.	0/1:32,22:32:54:0.407:2	./.	./.	0/1:44,16:32:61:0.267:2	./.	./.
chr2	30980940	rs508405	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,10:28:29:0.345:2	0/1:7,6:31:13:0.462:2	0/1:0,4:31:4:1.00:2	0/1:6,18:31:24:0.750:2	./.	0/1:11,15:31:26:0.577:2	0/1:16,14:31:30:0.467:2	0/1:16,11:31:27:0.407:2	0/1:0,29:31:29:1.00:2	./.	0/1:9,13:30:22:0.591:2
chr2	31135184	rs2288101	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:0,12:32:12:1.00:2	0/1:4,6:31:10:0.600:2	0/1:27,24:31:51:0.471:2	0/1:22,10:32:32:0.313:2	0/1:25,8:30:33:0.242:2	0/1:17,16:31:33:0.485:2	0/1:18,19:31:37:0.514:2	./.	0/1:24,18:32:42:0.429:2	./.
chr2	31178818	rs2288100	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	0/1:64,50:31:114:0.439:2	./.	0/1:63,40:31:103:0.388:2	0/1:50,42:32:92:0.457:2	./.	0/1:48,34:32:82:0.415:2
chr2	31399988	rs4592896	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:52,61:32:113:0.540:2	0/1:28,38:31:66:0.576:2	./.	./.	./.	./.	0/1:59,56:31:115:0.487:2	0/1:57,70:31:127:0.551:2	./.	0/1:59,41:32:100:0.410:2	0/1:55,55:31:110:0.500:2
chr2	31409328	rs371139161	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,31:32:73:0.425:2	0/1:35,15:33:50:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	31410653	rs7422120	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,22:31:60:0.367:2	0/1:14,20:33:34:0.588:2	./.	./.	./.	./.	0/1:13,27:33:40:0.675:2	0/1:37,39:32:76:0.513:2	./.	0/1:29,27:32:56:0.482:2	0/1:49,23:32:73:0.319:2
chr2	31411184	rs1465972	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	0/1:10,8:30:18:0.444:2	0/1:21,22:32:43:0.512:2	./.	0/1:7,16:32:23:0.696:2	0/1:26,11:33:37:0.297:2
chr2	31411242	rs1465973	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,8:31:18:0.444:2	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	0/1:11,4:30:15:0.267:2	./.	0/1:6,9:31:15:0.600:2	0/1:23,11:32:34:0.324:2
chr2	31414223	rs13408524	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,9:28:12:0.750:2	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	0/1:17,4:31:21:0.190:2	0/1:4,6:30:10:0.600:2	./.	0/1:6,5:28:11:0.455:2	0/1:9,10:28:19:0.526:2
chr2	31414807	rs1562022	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,18:32:42:0.439:2	0/1:14,15:31:29:0.517:2	0/1:0,6:33:6:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,74:33:74:1.00:2	0/1:50,42:32:92:0.457:2	0/1:0,52:34:52:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,36:32:36:1.00:2
chr2	31414851	rs7587515	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,30:30:60:0.500:2	0/1:17,20:30:37:0.541:2	./.	./.	./.	./.	./.	0/1:64,64:30:128:0.500:2	./.	./.	./.
chr2	31414885	rs369708091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:30:102:0.461:2	./.	./.	./.	./.	./.
chr2	31417290	rs76523220	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:33:33:0.424:2	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	31423365	rs111554796	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,37:31:101:0.366:2	./.	./.	./.	./.	./.
chr2	31423443	rs17011001	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,34:33:82:0.415:2	0/1:25,28:32:53:0.528:2	./.	./.	./.	./.	0/1:71,50:32:121:0.413:2	./.	./.	0/1:29,34:32:63:0.540:2	./.
chr2	31562412	rs207440	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:31:97:0.454:2	./.	./.	./.
chr2	31571786	rs1884725	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,49:33:49:1.00:2	./.	0/1:0,54:33:54:1.00:2	0/1:2,23:32:25:0.920:2	0/1:1,52:32:53:0.981:2	0/1:32,18:32:50:0.360:2	0/1:22,30:33:52:0.577:2	0/1:53,47:33:100:0.470:2
chr2	31589836	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.	./.
chr2	31589847	rs2295475	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,90:32:92:0.978:2	0/1:0,42:32:42:1.00:2	./.	./.	./.	0/1:2,109:31:111:0.982:2	./.	0/1:71,56:32:127:0.441:2	./.	./.	./.
chr2	31590917	rs17011368	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,45:32:84:0.536:2	./.	./.	./.	./.	./.	./.
chr2	31593265	rs17323225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.	./.	./.	./.
chr2	31596731	rs17395224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,11:32:40:0.275:2	./.	./.	./.	./.	./.	./.
chr2	31600017	rs45471294	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,104:31:181:0.575:2
chr2	31606670	rs4407290	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,55:31:127:0.433:2	./.	./.	./.
chr2	31611143	rs45523133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,41:32:85:0.482:2	./.	./.	./.
chr2	31758822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.
chr2	31805706	rs523349	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.
chr2	31806031	rs632148	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr2	32093496	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:134,6:33:140:0.043:2	0/1:30,5:31:35:0.143:2	./.	./.	0/1:141,12:32:153:0.078:2	0/1:116,35:32:151:0.232:2	./.	0/1:140,41:32:181:0.227:2	./.	0/1:163,13:32:178:0.074:2
chr2	32117125	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr2	32340779	rs145264166	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,14:31:32:0.438:2	./.	./.	./.	0/1:36,19:33:55:0.345:2	./.	./.
chr2	32449832	rs61754192	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,7:30:15:0.467:2	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.
chr2	32475109	rs455060	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:2,32:32:34:0.941:2	0/1:0,7:33:7:1.00:2	0/1:1,83:32:84:0.988:2	0/1:17,22:32:39:0.564:2	./.	0/1:0,46:32:46:1.00:2	./.	0/1:50,39:33:89:0.438:2	0/1:43,29:33:72:0.403:2	0/1:1,102:32:103:0.990:2
chr2	32475685	rs377140938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:31:56:0.411:2	./.	./.
chr2	32476390	rs408813	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,123:33:123:1.00:2	0/1:30,45:33:75:0.600:2	./.	0/1:1,98:33:99:0.990:2	./.	0/1:46,58:34:104:0.558:2	0/1:47,27:32:74:0.365:2	0/1:0,104:32:104:1.00:2
chr2	32481794	rs34710533	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	32481795	rs59966205	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,9:31:9:1.00:2	0/1:2,103:31:105:0.981:2	0/1:28,29:32:57:0.509:2	./.	0/1:0,57:32:57:1.00:2	./.	0/1:54,62:32:116:0.534:2	0/1:51,31:32:82:0.378:2	0/1:0,122:32:122:1.00:2
chr2	32517384	rs55684792	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,53:32:98:0.541:2	./.	./.	./.	0/1:92,62:33:154:0.403:2	./.	./.
chr2	32602668	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,6:32:151:0.040:2	./.	./.
chr2	32626288	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr2	32640396	rs34417238	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,41:32:75:0.547:2	./.	./.	./.	0/1:47,48:33:95:0.505:2	./.	./.
chr2	32641040	rs34996177	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:31:27:0.296:2	./.	./.	./.
chr2	32666411	rs41291167	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,27:31:45:0.600:2	0/1:13,15:30:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	32667182	rs60197615	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,28:33:28:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,34:34:34:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,34:34:34:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,39:33:39:1.00:2
chr2	32713706	rs2366894	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:32:145:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,17:31:17:1.00:2	0/1:2,154:31:156:0.987:2	0/1:57,53:32:110:0.482:2	0/1:89,76:31:165:0.461:2	0/1:68,53:32:121:0.438:2	0/1:83,69:32:152:0.454:2	0/1:96,79:32:175:0.451:2	0/1:67,69:31:136:0.507:2	0/1:0,120:32:120:1.00:2
chr2	32718615	rs61754197	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.	0/1:38,27:33:65:0.415:2	./.	./.
chr2	32734847	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	32735633	rs61754198	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,14:31:30:0.467:2	./.	./.	./.	0/1:29,29:33:58:0.500:2	./.	./.
chr2	32740138	rs34757266	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,56:33:102:0.549:2	0/1:22,25:32:47:0.532:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	32740599	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:28:161:0.031:2	./.	./.
chr2	32757239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,7:20:78:0.090:2	./.	./.	./.
chr2	32800422	rs35286811	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,35:29:106:0.330:2	./.	0/1:41,36:31:77:0.468:2	./.	./.	./.
chr2	32822957	rs2710625	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:29:53:0.472:2	0/1:18,14:30:32:0.438:2	0/1:0,9:31:9:1.00:2	0/1:1,36:31:37:0.973:2	./.	./.	0/1:44,40:31:85:0.476:2	./.	./.	0/1:21,9:30:30:0.300:2	0/1:1,51:31:52:0.981:2
chr2	32855615	rs2710623	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:33:12:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,15:32:16:1.00:2	0/1:0,13:35:13:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,23:32:23:1.00:2
chr2	32855706	rs181139902	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,42:31:83:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr2	32865435	rs150963117	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,33:32:79:0.418:2	./.	./.	./.	./.
chr2	32961858	rs2273660	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,38:32:70:0.543:2	./.
chr2	32983526	rs2273665	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:30:51:1.00:2	./.	0/1:0,69:30:69:1.00:2	0/1:24,20:31:44:0.455:2	0/1:32,34:30:66:0.515:2	0/1:44,32:31:76:0.421:2	0/1:1,37:30:38:0.974:2	0/1:25,38:30:63:0.603:2
chr2	33042596	rs151264467	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,70:33:133:0.526:2
chr2	33359533	rs77548335	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,63:31:141:0.447:2	./.	./.	./.
chr2	33359565	rs116713089	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,45:31:120:0.375:2	./.	./.	./.	0/1:57,36:31:93:0.387:2
chr2	33412077	rs1065324	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,53:31:54:1.00:2	0/1:5,5:32:10:0.500:2	0/1:62,46:31:108:0.426:2	0/1:70,51:31:121:0.421:2	0/1:49,50:31:99:0.505:2	0/1:83,63:31:146:0.432:2	./.	./.	0/1:59,45:31:104:0.433:2	0/1:63,49:31:112:0.438:2
chr2	33447202	rs2290448	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:31:103:1.00:2	0/1:1,54:31:55:0.982:2	0/1:7,8:29:15:0.533:2	0/1:91,48:31:139:0.345:2	0/1:74,40:29:114:0.351:2	0/1:112,75:30:187:0.401:2	0/1:46,39:31:85:0.459:2	./.	./.	0/1:60,40:31:100:0.400:2	0/1:67,65:31:132:0.492:2
chr2	33484666	rs61754245	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:33:23:0.565:2	./.	./.	./.	./.
chr2	33487873	rs77938757	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:31:74:0.405:2	0/1:22,11:32:33:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	33488419	rs12468099	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,46:33:69:0.667:2	0/1:20,27:32:47:0.574:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	0/1:57,31:32:88:0.352:2	0/1:61,31:32:92:0.337:2	./.	./.	./.
chr2	33505139	rs2290427	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,42:32:77:0.545:2	./.	./.	./.	./.
chr2	33540248	rs1058840	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,37:32:61:0.607:2	0/1:16,22:31:38:0.579:2	./.	0/1:45,33:32:78:0.423:2	0/1:0,65:31:65:1.00:2	0/1:38,51:31:89:0.573:2	0/1:50,31:32:81:0.383:2	0/1:1,97:32:98:0.990:2	0/1:39,32:32:71:0.451:2	0/1:0,53:31:53:1.00:2	0/1:55,45:32:100:0.450:2
chr2	33567931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,5:30:66:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	33572555	rs6706620	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,58:32:132:0.439:2	./.	./.
chr2	33585796	rs4422143	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:1,31:28:32:0.969:2	0/1:0,10:32:10:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,101:28:101:1.00:2
chr2	33764286	rs7592762	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:32:19:0.579:2	0/1:2,95:32:97:0.979:2	0/1:52,34:31:86:0.395:2	./.	0/1:52,49:33:101:0.485:2	0/1:67,57:33:124:0.460:2	0/1:56,57:33:113:0.504:2	0/1:59,48:32:107:0.449:2	0/1:70,48:33:118:0.407:2
chr2	33780605	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:120:0.034:2	./.	./.	./.	./.	./.
chr2	33787773	rs13415927	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,33:32:95:0.347:2	./.	./.	./.	0/1:97,73:34:170:0.429:2	./.	./.
chr2	36704144	rs848547	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,47:32:95:0.495:2	0/1:26,22:31:48:0.458:2	0/1:2,3:31:5:0.600:2	0/1:52,69:31:121:0.570:2	./.	./.	0/1:0,134:32:134:1.00:2	0/1:79,72:32:151:0.477:2	0/1:55,58:33:113:0.513:2	0/1:0,78:33:78:1.00:2	./.
chr2	36756288	rs711247	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,27:29:64:0.422:2	0/1:20,19:29:39:0.487:2	0/1:0,10:30:10:1.00:2	0/1:44,65:30:109:0.596:2	0/1:0,48:30:48:1.00:2	0/1:50,41:30:91:0.451:2	0/1:0,75:30:76:1.00:2	0/1:2,92:29:94:0.979:2	0/1:0,85:31:85:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,119:29:119:1.00:2
chr2	36764607	rs113863774	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2	./.	0/1:32,19:31:51:0.373:2
chr2	36781401	rs1533946	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,3:33:16:0.188:2	0/1:36,34:32:70:0.486:2	0/1:38,33:32:71:0.465:2	0/1:22,43:32:65:0.662:2	0/1:36,36:33:72:0.500:2	0/1:49,34:31:83:0.410:2	0/1:30,43:33:73:0.589:2	0/1:0,57:33:57:1.00:2	0/1:0,80:32:80:1.00:2
chr2	36782886	rs848642	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,23:32:49:0.469:2	0/1:9,14:32:23:0.609:2	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:19,17:32:36:0.472:2	./.	./.	./.	./.
chr2	36783127	rs10194100	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:33:16:0.563:2	0/1:71,49:32:120:0.408:2	0/1:45,29:32:74:0.392:2	0/1:73,74:33:147:0.503:2	0/1:50,33:32:83:0.398:2	0/1:58,67:32:125:0.536:2	0/1:97,78:34:175:0.446:2	0/1:1,101:33:102:0.990:2	0/1:1,159:33:160:0.994:2
chr2	36808732	rs848637	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,64:33:122:0.525:2	0/1:38,49:33:87:0.563:2	0/1:1,18:32:19:0.947:2	0/1:73,64:33:137:0.467:2	0/1:49,40:31:89:0.449:2	0/1:77,56:31:133:0.421:2	0/1:0,83:33:83:1.00:2	0/1:58,57:32:115:0.496:2	0/1:59,88:34:147:0.599:2	0/1:1,117:33:118:0.992:2	0/1:0,177:33:177:1.00:2
chr2	36810586	rs14291	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,50:29:98:0.510:2	0/1:48,50:28:98:0.510:2	0/1:53,42:29:95:0.442:2	0/1:48,42:29:90:0.467:2	0/1:49,67:29:117:0.578:2	0/1:52,52:30:104:0.500:2	0/1:0,60:28:60:1.00:2	0/1:0,94:29:94:1.00:2
chr2	37000956	rs140104536	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,63:32:140:0.450:2	0/1:43,31:33:74:0.419:2	./.	0/1:108,89:32:197:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr2	37008924	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.
chr2	37032669	rs72785023	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,28:30:74:0.378:2	0/1:23,22:31:45:0.489:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	37041480	rs17441812	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	0/1:26,25:31:51:0.490:2	./.	0/1:49,33:31:82:0.402:2	./.	./.	./.
chr2	37088384	rs140246246	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:33:48:0.583:2	./.
chr2	37094945	rs2540923	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:34:32:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,25:34:25:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,26:34:26:1.00:2
chr2	37152258	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.
chr2	37152329	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.	./.	0/1:117,4:33:121:0.033:2	./.	./.
chr2	37152334	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,5:30:91:0.055:2	0/1:69,8:28:77:0.104:2	./.	0/1:88,4:30:92:0.043:2	0/1:63,4:28:67:0.060:2	0/1:69,9:26:79:0.115:2	0/1:54,4:31:58:0.069:2	0/1:88,6:29:94:0.064:2	0/1:107,9:28:116:0.078:2	./.	0/1:112,4:32:116:0.034:2
chr2	37152342	rs200160777	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:63,5:26:68:0.074:2	./.	./.	./.	0/1:67,6:25:73:0.082:2	./.	./.	0/1:107,4:30:111:0.036:2	./.	./.
chr2	37229453	rs145906870	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,63:33:132:0.477:2
chr2	37230728	rs1007823	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,35:32:89:0.393:2	./.	./.	./.	./.	./.	./.	./.
chr2	37230734	rs17497654	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:31:78:0.449:2	0/1:27,26:32:53:0.491:2	0/1:48,27:31:75:0.360:2	./.	0/1:58,29:31:87:0.333:2	./.
chr2	37241050	rs17020125	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,52:31:104:0.500:2	./.	./.	./.	./.	./.	./.	0/1:0,117:32:117:1.00:2
chr2	37280680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.
chr2	37295867	rs75759149	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:33:82:0.463:2	./.	./.
chr2	37306340	rs6758981	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,88:30:92:0.957:2
chr2	37306343	rs6743906	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,92:31:92:1.00:2
chr2	37315514	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,6:33:94:0.064:2	./.
chr2	37315559	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:30:175:0.034:2	./.
chr2	37317869	rs4670654	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,75:32:75:1.00:2	0/1:2,92:32:94:0.979:2	0/1:0,69:32:69:1.00:2	0/1:0,132:32:132:1.00:2
chr2	37319156	rs62621388	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,84:28:84:1.00:2
chr2	37402281	rs192623599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:31:114:0.354:2	./.	./.	./.	./.
chr2	37402356	rs45439591	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,70:33:70:1.00:2
chr2	37406644	rs10182091	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,14:29:36:0.389:2	0/1:20,13:28:33:0.394:2	./.	0/1:19,11:30:30:0.367:2	0/1:12,8:28:20:0.400:2	./.	0/1:23,12:30:35:0.343:2	./.	./.	./.	0/1:0,40:29:40:1.00:2
chr2	37406680	rs10205833	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,14:32:32:0.438:2	0/1:18,16:31:34:0.471:2	./.	0/1:16,21:32:37:0.568:2	0/1:11,7:32:18:0.389:2	./.	0/1:21,11:32:32:0.344:2	./.	./.	./.	0/1:0,54:32:54:1.00:2
chr2	37414541	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	./.	./.	./.	./.	./.
chr2	37414548	rs45493492	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,61:33:61:1.00:2
chr2	37414586	rs45626240	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,36:32:36:1.00:2
chr2	37415603	rs45552433	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,144:32:146:0.993:2
chr2	37438993	rs1137437	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,56:32:124:0.452:2	0/1:43,32:32:75:0.427:2	0/1:0,17:30:17:1.00:2	0/1:0,139:32:140:1.00:2	0/1:3,98:31:101:0.970:2	0/1:93,51:31:144:0.354:2	./.	0/1:125,74:31:199:0.372:2	0/1:81,72:32:153:0.471:2	0/1:2,96:32:98:0.980:2	./.
chr2	37456032	rs2098386	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,26:31:26:1.00:2	0/1:44,17:32:61:0.279:2	0/1:0,37:32:37:1.00:2	0/1:0,56:32:56:1.00:2
chr2	37458711	rs3213745	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,14:30:50:0.280:2	0/1:17,14:31:31:0.452:2	0/1:0,14:30:14:1.00:2	0/1:2,55:31:57:0.965:2	0/1:2,58:30:60:0.967:2	0/1:29,30:30:59:0.508:2	./.	0/1:30,29:30:59:0.492:2	0/1:39,31:32:71:0.443:2	0/1:0,47:31:47:1.00:2	./.
chr2	37468837	rs17409514	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	0/1:46,39:33:85:0.459:2	./.
chr2	37494591	rs2302650	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,11:26:33:0.333:2	0/1:8,8:29:16:0.500:2	./.	./.	./.	0/1:26,24:29:50:0.480:2	0/1:16,10:27:26:0.385:2	./.	./.	./.	./.
chr2	37505105	rs10460527	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,101:33:101:1.00:2
chr2	37518045	rs10177176	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,27:33:59:0.458:2	0/1:10,23:32:33:0.697:2	0/1:0,11:31:11:1.00:2	0/1:1,56:33:57:0.982:2	0/1:2,36:32:38:0.947:2	0/1:27,38:32:65:0.585:2	./.	0/1:38,30:32:68:0.441:2	0/1:30,40:33:70:0.571:2	0/1:1,54:33:55:0.982:2	./.
chr2	37543593	rs55698418	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,73:31:74:1.00:2
chr2	37579937	rs2230299	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,79:30:79:1.00:2
chr2	38178406	rs4670799	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:31:23:0.565:2	0/1:12,6:30:18:0.333:2	0/1:14,9:32:23:0.391:2	0/1:8,5:32:13:0.385:2	0/1:14,12:31:26:0.462:2	0/1:0,24:33:24:1.00:2	0/1:6,13:31:19:0.684:2	0/1:19,17:32:36:0.472:2
chr2	38179134	rs4670800	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,88:31:89:1.00:2	0/1:0,113:32:114:1.00:2
chr2	38201219	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	38244693	rs73926971	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.
chr2	38297884	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.
chr2	38298139	rs1800440	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,57:33:119:0.479:2	./.	./.	./.	./.	0/1:77,43:33:121:0.358:2	./.	./.
chr2	38298150	rs1056837	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,45:28:108:0.417:2	0/1:36,27:29:63:0.429:2	0/1:9,4:28:13:0.308:2	0/1:1,113:29:114:0.991:2	0/1:75,46:29:121:0.380:2	0/1:0,152:29:152:1.00:2	0/1:52,51:29:103:0.495:2	0/1:80,61:28:141:0.433:2	0/1:89,43:29:132:0.326:2	0/1:79,59:29:138:0.428:2	0/1:75,61:28:136:0.449:2
chr2	38298169	rs4986888	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,55:32:114:0.482:2	./.	./.	./.	./.
chr2	38298203	rs1056836	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,65:33:137:0.474:2	0/1:40,30:32:70:0.429:2	0/1:6,7:34:13:0.538:2	0/1:1,140:32:141:0.993:2	0/1:78,48:31:126:0.381:2	0/1:0,155:32:155:1.00:2	0/1:90,63:33:153:0.412:2	0/1:101,61:32:162:0.377:2	0/1:112,59:33:171:0.345:2	0/1:74,63:33:137:0.460:2	0/1:82,65:33:147:0.442:2
chr2	38298419	rs141245683	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,57:32:138:0.413:2	./.	./.	./.	./.
chr2	38301569	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,52:32:130:0.400:2	./.	./.	./.
chr2	38301803	rs9341249	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,33:31:76:0.434:2	./.	./.	./.	./.
chr2	38302390	rs10012	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	0/1:0,6:31:6:1.00:2	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.
chr2	38525490	rs181740472	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,39:30:104:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr2	38536626	rs2305243	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,6:32:11:0.545:2	0/1:1,6:32:7:0.857:2	./.	0/1:5,7:31:12:0.583:2	./.	0/1:18,7:29:25:0.280:2	0/1:10,5:31:15:0.333:2	0/1:15,6:31:21:0.286:2	0/1:4,9:32:13:0.692:2	0/1:10,6:31:16:0.375:2	./.
chr2	38542482	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr2	38546072	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.
chr2	38604351	rs3731847	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:27:11:0.636:2	./.	./.	./.	./.	0/1:10,5:29:15:0.333:2	0/1:0,8:27:8:1.00:2	./.	0/1:4,4:30:8:0.500:2	./.	./.
chr2	38829737	rs34376380	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,29:30:43:0.674:2	./.	./.	./.	./.	./.	0/1:7,22:31:29:0.759:2	./.
chr2	38916970	rs6741892	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:30:89:0.461:2	0/1:25,25:31:50:0.500:2	./.	./.	./.	./.
chr2	39008949	rs1056104	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:31:63:0.540:2	./.	./.	./.	./.	./.
chr2	39025499	rs61757607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,61:32:146:0.418:2	./.
chr2	39025555	rs1530853	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,42:32:94:0.447:2	0/1:42,28:32:70:0.400:2	./.	0/1:0,74:32:74:1.00:2	0/1:0,52:31:53:1.00:2	0/1:41,36:31:77:0.468:2	0/1:37,34:32:71:0.479:2	0/1:46,46:32:92:0.500:2	./.	0/1:49,42:32:91:0.462:2	0/1:63,57:32:120:0.475:2
chr2	39046069	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,16:31:48:0.333:2	./.	./.	./.	./.
chr2	39050141	rs3770681	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,27:31:49:0.551:2	0/1:20,6:31:26:0.231:2	./.	0/1:0,41:31:41:1.00:2	0/1:1,37:31:38:0.974:2	0/1:30,23:30:53:0.434:2	0/1:31,16:32:47:0.340:2	0/1:33,18:30:51:0.353:2	0/1:36,34:32:70:0.486:2	0/1:24,8:33:32:0.250:2	0/1:45,31:31:76:0.408:2
chr2	39081244	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.
chr2	39082344	rs7598922	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,37:33:90:0.411:2	0/1:27,22:32:49:0.449:2	0/1:7,5:33:12:0.417:2	0/1:0,92:32:92:1.00:2	0/1:4,67:32:71:0.944:2	0/1:56,38:32:94:0.404:2	0/1:68,34:32:102:0.333:2	0/1:49,40:32:89:0.449:2	./.	0/1:53,42:33:95:0.442:2	0/1:72,44:33:116:0.379:2
chr2	39088323	rs11893062	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:32:58:0.379:2	./.	./.	./.
chr2	39095403	rs61757604	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,25:32:42:0.595:2	./.	./.	./.	./.
chr2	39109558	rs3099950	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	0/1:21,26:30:47:0.553:2	./.	0/1:25,14:31:39:0.359:2	./.
chr2	39148511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.
chr2	39164561	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:30:73:0.411:2	./.	./.	./.	./.	./.
chr2	39187190	rs6755527	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:1,3:29:4:0.750:2	./.	./.	./.	./.	./.
chr2	39285828	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr2	39456516	rs35454041	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	39507417	rs3755176	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,43:31:43:1.00:2	0/1:9,6:30:15:0.400:2	0/1:38,36:31:74:0.486:2	0/1:0,51:31:51:1.00:2	0/1:43,58:31:101:0.574:2	0/1:0,42:31:42:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,68:31:68:1.00:2	0/1:1,120:32:121:0.992:2
chr2	39583446	rs8545	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,49:33:49:1.00:2	0/1:4,4:33:8:0.500:2	0/1:40,74:33:114:0.649:2	0/1:0,75:32:75:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,81:32:81:1.00:2	0/1:2,116:33:118:0.983:2	0/1:0,144:34:144:1.00:2	0/1:0,95:33:95:1.00:2	0/1:1,162:33:163:0.994:2
chr2	39664092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.	./.
chr2	39892373	rs12989245	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:1,42:30:43:0.977:2	0/1:20,26:32:46:0.565:2	./.	./.	0/1:30,28:32:58:0.483:2	./.	0/1:19,22:30:41:0.537:2
chr2	39892377	rs12712652	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	0/1:1,45:29:46:0.978:2	0/1:21,25:28:46:0.543:2	./.	./.	0/1:29,28:30:57:0.491:2	./.	0/1:20,24:28:44:0.545:2
chr2	39996230	rs6745129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,16:30:24:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	40657129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.
chr2	42165754	rs10192292	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:74,77:32:152:0.510:2	./.	0/1:69,49:31:118:0.415:2	0/1:83,61:32:144:0.424:2	0/1:3,133:32:136:0.978:2	./.	./.	0/1:65,39:33:104:0.375:2
chr2	42165757	rs7576690	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,50:33:137:0.365:2	./.	./.	0/1:65,39:33:104:0.375:2
chr2	42181169	rs76580820	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,26:31:74:0.351:2	./.
chr2	42181226	rs10180209	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:32:81:0.420:2	./.	0/1:48,26:31:74:0.351:2	./.
chr2	42275819	rs11897440	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.
chr2	42275876	rs55918906	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:33:17:0.235:2	./.	./.	./.	./.
chr2	42396722	rs7233	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,6:33:16:0.375:2	0/1:4,7:33:11:0.636:2	./.	0/1:12,14:33:26:0.538:2	0/1:9,15:32:24:0.625:2	0/1:24,20:32:44:0.455:2	./.	0/1:21,15:31:36:0.417:2	0/1:0,24:32:24:1.00:2	0/1:0,18:33:18:1.00:2	0/1:8,9:32:17:0.529:2
chr2	42510018	rs6736913	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,39:31:40:1.00:2	0/1:2,74:32:76:0.974:2	0/1:0,46:32:46:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,77:32:77:1.00:2	0/1:1,84:33:85:0.988:2
chr2	42515388	rs10202624	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,74:33:75:0.987:2	0/1:0,37:32:37:1.00:2	0/1:0,93:33:93:1.00:2
chr2	42515437	rs28651764	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,10:32:28:0.357:2	0/1:10,6:32:16:0.375:2	0/1:0,5:31:5:1.00:2	0/1:14,19:33:33:0.576:2	./.	0/1:16,19:32:35:0.543:2	0/1:1,19:32:20:0.950:2	0/1:12,18:31:30:0.600:2	./.	./.	0/1:36,24:32:60:0.400:2
chr2	42528425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2
chr2	42531610	rs148415631	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,54:29:88:0.614:2
chr2	42671619	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:33:103:0.505:2	0/1:49,23:31:72:0.319:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	42979422	rs115399461	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,13:31:40:0.325:2	./.	./.	./.	./.	./.	./.
chr2	42990101	rs2278586	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	0/1:38,25:31:63:0.397:2	0/1:33,39:32:72:0.542:2	./.	./.	0/1:27,27:32:54:0.500:2	./.
chr2	42990336	rs1992286	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,36:31:75:0.480:2	0/1:24,21:31:45:0.467:2	./.	./.	0/1:89,72:32:161:0.447:2	0/1:3,104:33:107:0.972:2	0/1:0,116:33:116:1.00:2	0/1:79,63:32:142:0.444:2	./.	0/1:52,40:32:92:0.435:2	0/1:0,73:32:73:1.00:2
chr2	42990344	rs200634238	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,6:20:57:0.105:2	./.	./.	0/1:69,18:24:87:0.207:2	0/1:94,27:21:122:0.223:2	0/1:68,9:24:77:0.117:2	0/1:75,14:24:89:0.157:2	0/1:87,21:22:109:0.194:2	0/1:67,8:25:75:0.107:2	0/1:60,9:23:70:0.130:2	0/1:46,5:22:51:0.098:2
chr2	42990476	rs147328832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:33:59:0.492:2	./.	./.
chr2	42990522	rs12712859	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2	0/1:44,23:30:67:0.343:2	0/1:38,15:31:53:0.283:2	./.	./.	0/1:23,17:32:40:0.425:2	./.
chr2	43015704	rs3816182	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,73:31:187:0.390:2	0/1:100,68:31:168:0.405:2	0/1:102,77:31:180:0.430:2	./.	0/1:95,47:30:143:0.331:2	./.
chr2	43015719	rs3816183	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:79,57:29:136:0.419:2	0/1:37,37:28:74:0.500:2	./.	./.	0/1:0,156:29:156:1.00:2	0/1:0,170:29:170:1.00:2	0/1:1,151:28:152:0.993:2	0/1:0,165:29:165:1.00:2	0/1:97,79:31:176:0.449:2	0/1:84,47:28:131:0.359:2	0/1:0,157:29:157:1.00:2
chr2	43015757	rs3816184	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,47:32:113:0.416:2	0/1:31,29:31:60:0.483:2	./.	./.	0/1:0,100:30:101:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,120:31:120:1.00:2	0/1:66,55:32:121:0.455:2	0/1:57,32:31:90:0.360:2	0/1:0,127:31:129:1.00:2
chr2	43506946	rs183860704	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:31:90:0.056:2	./.
chr2	43519977	rs35720761	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	43625184	rs33979934	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,125:31:125:1.00:2	0/1:92,87:31:179:0.486:2	0/1:0,150:31:150:1.00:2	0/1:89,83:32:172:0.483:2	0/1:92,79:31:172:0.462:2	./.	./.	0/1:69,55:32:124:0.444:2
chr2	43711523	rs998768	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,36:30:79:0.462:2	0/1:30,17:31:47:0.362:2	0/1:8,7:30:15:0.467:2	./.	0/1:21,26:30:47:0.553:2	./.	./.	./.	./.	./.	./.
chr2	43732823	rs7578597	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:65,49:33:114:0.430:2	0/1:22,16:33:38:0.421:2	0/1:5,6:33:11:0.545:2	./.	0/1:37,43:33:80:0.538:2	./.	./.	./.	./.	./.	./.
chr2	43768352	rs181440554	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,87:33:194:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr2	43793725	rs1158411	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,59:32:121:0.488:2	0/1:39,13:32:52:0.250:2	0/1:12,6:30:18:0.333:2	./.	0/1:36,38:30:74:0.514:2	./.	./.	0/1:62,32:31:94:0.340:2	./.	0/1:67,53:31:120:0.442:2	0/1:69,61:31:130:0.469:2
chr2	43797619	rs17031056	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,43:31:120:0.358:2	./.	0/1:65,61:32:126:0.484:2	0/1:61,62:32:123:0.504:2
chr2	43801712	rs11899823	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,32:34:69:0.464:2	0/1:12,17:33:29:0.586:2	0/1:4,4:33:8:0.500:2	./.	0/1:14,29:32:43:0.674:2	./.	./.	0/1:21,23:33:44:0.523:2	./.	0/1:20,28:33:48:0.583:2	0/1:29,32:33:61:0.525:2
chr2	43802068	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,37:32:91:0.407:2	./.	./.
chr2	43804229	rs13021894	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,31:32:77:0.403:2	0/1:30,20:32:50:0.400:2	0/1:10,4:33:14:0.286:2	./.	0/1:34,29:31:63:0.460:2	./.	./.	0/1:57,38:32:95:0.400:2	./.	0/1:30,40:32:70:0.571:2	0/1:47,52:32:99:0.525:2
chr2	43805739	rs61754256	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,25:32:54:0.463:2	0/1:9,17:31:26:0.654:2	0/1:3,3:30:6:0.500:2	./.	0/1:16,15:28:31:0.484:2	./.	./.	./.	./.	./.	./.
chr2	43819139	rs17031095	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,38:32:86:0.442:2	0/1:30,17:32:47:0.362:2	0/1:8,5:32:13:0.385:2	./.	0/1:51,28:32:80:0.354:2	./.	./.	./.	./.	./.	./.
chr2	43903066	rs3828297	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,87:30:186:0.470:2	0/1:56,59:30:115:0.513:2	0/1:12,5:29:17:0.294:2	0/1:0,181:30:181:1.00:2	0/1:6,131:29:137:0.956:2	0/1:115,73:30:188:0.388:2	0/1:5,135:30:140:0.964:2	0/1:2,189:29:191:0.990:2	./.	0/1:0,179:30:179:1.00:2	0/1:0,186:29:186:1.00:2
chr2	43903354	rs4952675	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,64:33:145:0.441:2	0/1:49,61:33:110:0.555:2	0/1:21,4:32:25:0.160:2	0/1:1,143:33:144:0.993:2	0/1:0,156:33:156:1.00:2	0/1:69,74:33:143:0.517:2	0/1:2,155:33:157:0.987:2	0/1:0,145:33:145:1.00:2	./.	0/1:0,139:33:139:1.00:2	0/1:1,166:33:167:0.994:2
chr2	43926943	rs7606783	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,118:32:120:0.983:2	0/1:78,57:32:135:0.422:2	0/1:72,48:31:120:0.400:2	0/1:69,54:32:123:0.439:2	0/1:79,75:32:155:0.487:2	./.	0/1:3,75:33:78:0.962:2	0/1:0,125:33:125:1.00:2
chr2	43927088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.
chr2	43927374	rs115528845	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:33:60:0.450:2	0/1:33,20:32:53:0.377:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	43927459	rs12623703	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,65:30:155:0.419:2	./.	./.	./.	./.	./.	0/1:52,53:30:105:0.505:2	0/1:65,67:29:133:0.508:2
chr2	43931168	rs145437024	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	./.	./.
chr2	43931176	rs4953002	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,3:35:54:0.056:2	./.	./.	0/1:3,51:33:54:0.944:2	0/1:10,15:32:25:0.600:2	0/1:34,17:32:51:0.333:2	0/1:20,15:33:35:0.429:2	0/1:16,19:33:35:0.543:2	./.	0/1:0,39:33:39:1.00:2	0/1:0,42:33:42:1.00:2
chr2	43984301	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.
chr2	43989525	rs76859622	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,78:33:161:0.484:2	./.	./.	0/1:69,49:33:118:0.415:2	./.	./.	./.	./.
chr2	44004010	rs2288709	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:56,41:33:97:0.423:2	0/1:35,20:33:55:0.364:2	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:33:95:0.484:2	0/1:0,133:33:133:1.00:2
chr2	44021826	rs9309107	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:59,59:31:118:0.500:2	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.	./.	./.	0/1:42,41:31:83:0.494:2	0/1:0,160:32:160:1.00:2
chr2	44028013	rs11556157	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	0/1:11,6:32:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,48:32:48:1.00:2
chr2	44028773	rs17495522	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:31:64:0.469:2	./.	./.	./.	./.	./.
chr2	44036913	rs8302	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,68:33:143:0.479:2	0/1:44,37:33:81:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,147:34:148:0.993:2
chr2	44036922	rs10186552	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:29:72:0.417:2	./.	./.	0/1:42,69:30:111:0.622:2	./.
chr2	44040347	rs140374206	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,29:33:77:0.377:2
chr2	44040401	rs6720173	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:33:53:0.547:2	./.
chr2	44052035	rs373237261	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,42:32:128:0.328:2
chr2	44065090	rs6756629	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:33:82:0.463:2	0/1:24,32:33:57:0.571:2	./.
chr2	44065780	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	44066174	rs3806471	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,27:29:43:0.628:2	0/1:19,5:30:24:0.208:2	0/1:0,9:31:9:1.00:2	./.	0/1:33,24:31:57:0.421:2	./.	0/1:27,23:32:50:0.460:2	./.	./.	./.	0/1:23,28:30:51:0.549:2
chr2	44066247	rs11887534	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:33:67:0.418:2	0/1:26,37:32:63:0.587:2	./.
chr2	44071743	rs4148211	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,14:33:14:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:16,18:32:34:0.529:2	0/1:11,11:33:23:0.500:2	0/1:30,18:33:48:0.375:2	./.	./.	./.	0/1:23,18:33:41:0.439:2
chr2	44078853	rs56132765	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,66:30:123:0.537:2	0/1:68,72:30:141:0.514:2	./.
chr2	44079606	rs9282575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:28:26:0.462:2	./.	./.	./.	./.	./.
chr2	44099433	rs4148217	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:32:44:0.386:2	0/1:32,20:31:52:0.385:2	./.	./.	./.	./.	./.	./.
chr2	44100949	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.
chr2	44101538	rs28517482	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:30,35:31:65:0.538:2	./.	0/1:0,63:30:63:1.00:2	0/1:0,44:31:44:1.00:2	0/1:41,42:30:83:0.506:2	0/1:0,83:32:83:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,106:32:106:1.00:2
chr2	44102491	rs4148221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,16:31:41:0.390:2	./.	./.	./.	./.	./.	./.	./.
chr2	44104925	rs6544718	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,48:32:89:0.539:2	0/1:37,33:32:70:0.471:2	0/1:4,17:33:21:0.810:2	0/1:0,159:33:159:1.00:2	0/1:94,91:32:185:0.492:2	0/1:0,133:32:133:1.00:2	0/1:107,72:32:179:0.402:2	./.	0/1:0,158:33:158:1.00:2	0/1:0,116:32:117:1.00:2	0/1:63,63:33:126:0.500:2
chr2	44139587	rs202033109	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,87:33:198:0.439:2	./.	./.
chr2	44162008	rs369815413	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:31:38:0.579:2	./.	./.	./.	./.
chr2	44175597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.	./.
chr2	44177701	rs58811869	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,48:31:102:0.471:2	./.	./.	./.	./.	0/1:46,50:32:96:0.521:2	0/1:0,87:32:87:1.00:2	./.
chr2	44177723	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.	./.	./.	./.
chr2	44201376	rs4953042	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,93:33:172:0.541:2	./.	./.	./.	./.	./.
chr2	44209477	rs6741066	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,35:32:66:0.530:2	0/1:15,11:31:26:0.423:2	0/1:0,5:31:5:1.00:2	0/1:44,16:32:60:0.267:2	0/1:21,13:32:34:0.382:2	./.	0/1:0,25:32:25:1.00:2	0/1:1,47:31:48:0.979:2	0/1:0,50:33:50:1.00:2	0/1:2,52:31:54:0.963:2	0/1:0,82:32:82:1.00:2
chr2	44471409	rs12613956	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,43:29:70:0.614:2	0/1:24,30:28:54:0.556:2	0/1:4,7:28:11:0.636:2	./.	0/1:1,123:29:124:0.992:2	./.	./.	./.	0/1:48,69:29:117:0.590:2	0/1:43,40:30:83:0.482:2	0/1:75,71:29:146:0.486:2
chr2	44502788	rs3738985	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:33:98:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,91:33:91:1.00:2	0/1:51,51:33:102:0.500:2	0/1:1,103:33:104:0.990:2	0/1:0,103:33:104:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,92:33:92:1.00:2
chr2	44512797	rs74997007	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,63:32:128:0.492:2	./.	0/1:46,61:33:107:0.570:2	./.
chr2	44513202	rs141587158	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,68:34:165:0.412:2	./.	./.
chr2	44539763	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr2	44547574	rs698761	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,32:30:79:0.405:2	0/1:34,32:30:66:0.485:2	./.	0/1:1,63:31:64:0.984:2	0/1:27,25:29:52:0.481:2	0/1:0,43:30:43:1.00:2	0/1:42,19:31:61:0.311:2	0/1:1,67:31:68:0.985:2	0/1:42,24:31:66:0.364:2	0/1:32,21:32:53:0.396:2	0/1:0,74:31:74:1.00:2
chr2	44571029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.
chr2	44617421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.
chr2	45640334	rs3755072	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,62:32:135:0.459:2	0/1:105,78:31:183:0.426:2	0/1:138,4:31:142:0.028:2	./.	./.	0/1:66,76:33:142:0.535:2	./.
chr2	45640374	rs3755073	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	0/1:78,76:32:154:0.494:2	./.	./.	./.	0/1:65,50:33:115:0.435:2	./.
chr2	45645512	rs2276655	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,27:31:88:0.307:2	./.	./.	./.	0/1:37,28:32:65:0.431:2	./.
chr2	46603702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.	./.	./.
chr2	46607644	rs41281469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,29:33:43:0.674:2	./.	./.
chr2	46607719	rs35606117	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:31:46:0.478:2	./.
chr2	46609572	rs59901247	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,54:32:101:0.535:2	./.	./.
chr2	46707808	rs70940616	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,8:33:122:0.066:2	0/1:154,5:33:159:0.031:2	0/1:107,4:36:112:0.036:2	./.	./.	./.	./.	./.
chr2	46803239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr2	46803262	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	0/1:184,10:33:194:0.052:2	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr2	46808136	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	46808168	rs55654131	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,96:30:186:0.516:2	./.	0/1:106,92:30:198:0.465:2	./.
chr2	46839424	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	46839433	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	46839477	rs1824050	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:28:11:0.364:2	0/1:0,46:26:46:1.00:2	0/1:32,17:27:49:0.347:2	0/1:28,24:28:52:0.462:2	./.	./.	./.	0/1:17,34:28:51:0.667:2	0/1:1,74:27:75:0.987:2
chr2	46986387	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	46986416	rs6738426	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,92:30:183:0.503:2	./.	0/1:79,103:29:182:0.566:2	./.	./.	./.	./.	0/1:86,106:29:192:0.552:2
chr2	46986649	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,47:29:88:0.534:2	./.	./.	./.	./.	./.
chr2	46986702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.
chr2	46986716	rs41489952	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,88:29:193:0.456:2	0/1:86,89:30:175:0.509:2	./.	./.
chr2	46987139	rs17771838	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	0/1:22,17:31:39:0.436:2	./.	./.	0/1:28,22:34:50:0.440:2	./.	0/1:31,36:32:67:0.537:2
chr2	46987300	rs3768720	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,75:32:167:0.449:2	0/1:43,40:32:85:0.482:2	0/1:20,11:32:31:0.355:2	0/1:110,82:32:193:0.427:2	./.	0/1:6,189:32:195:0.969:2	0/1:98,95:32:194:0.492:2	./.	0/1:0,187:33:188:1.00:2	0/1:96,73:32:169:0.432:2	0/1:1,193:32:194:0.995:2
chr2	46987338	rs41379147	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,53:30:163:0.325:2	./.
chr2	46987341	rs41432848	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,53:32:163:0.325:2	./.
chr2	46987544	rs41320947	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:32:53:0.547:2	./.
chr2	46987620	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.	./.	./.
chr2	46987621	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.	./.	./.
chr2	46987767	rs10221923	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	./.	0/1:23,37:31:60:0.617:2	./.	./.	0/1:42,39:33:81:0.481:2	./.	0/1:59,52:33:111:0.468:2
chr2	46987893	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2
chr2	46987935	rs3768719	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,9:32:25:0.360:2	./.	0/1:1,23:32:24:0.958:2	./.	./.	0/1:22,15:33:37:0.405:2	./.	0/1:1,38:33:39:0.974:2
chr2	46988073	rs17823065	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,73:33:181:0.403:2	0/1:90,91:34:181:0.503:2	./.	./.
chr2	46988145	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.
chr2	46988275	rs1058157	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:32:48:0.542:2	./.	0/1:30,13:31:43:0.302:2	./.	./.	./.	./.	0/1:40,37:32:77:0.481:2
chr2	46988416	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:32:196:0.036:2	./.	0/1:190,6:33:196:0.031:2	./.
chr2	46989262	rs17771942	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:30:32:0.355:2	./.	./.	./.
chr2	46989869	rs4953419	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,22:32:31:0.710:2	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	0/1:23,29:32:52:0.558:2
chr2	46990263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.
chr2	47045309	rs2289933	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,20:31:53:0.377:2	0/1:27,10:32:37:0.270:2	./.	0/1:0,49:31:49:1.00:2	0/1:19,16:29:35:0.457:2	0/1:40,37:30:77:0.481:2	./.	0/1:44,32:31:76:0.421:2	./.	./.	0/1:21,26:31:47:0.553:2
chr2	47045321	rs17773492	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,22:32:59:0.373:2	0/1:32,10:32:42:0.238:2	./.	0/1:0,53:31:53:1.00:2	0/1:25,16:29:41:0.390:2	0/1:42,38:32:80:0.475:2	./.	0/1:50,35:32:85:0.412:2	./.	./.	0/1:25,24:32:50:0.490:2
chr2	47049287	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2
chr2	47081196	rs61507430	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	0/1:1,4:30:5:0.800:2
chr2	47083044	rs1079	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.	0/1:8,3:33:11:0.273:2	0/1:0,4:32:4:1.00:2	./.
chr2	47133055	rs11890177	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,21:30:60:0.350:2	./.	./.	0/1:39,38:30:77:0.494:2	./.	0/1:55,41:30:96:0.427:2	0/1:48,62:30:110:0.564:2
chr2	47177617	rs61738825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,51:32:104:0.490:2
chr2	47202190	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2
chr2	47220622	rs17480869	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:69,57:32:126:0.452:2	0/1:38,46:31:84:0.548:2	0/1:0,12:32:12:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:71,88:32:160:0.553:2
chr2	47251469	rs2304290	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:32:73:0.562:2	0/1:79,56:31:135:0.415:2	./.	./.	./.	./.
chr2	47251510	rs11885389	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:33:66:0.455:2
chr2	47278901	rs3739100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,32:30:55:0.582:2	./.	./.	./.	./.
chr2	47287966	rs142959785	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,81:32:159:0.509:2	./.
chr2	47301029	rs3739099	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,35:32:89:0.393:2	0/1:35,28:32:63:0.444:2	./.	0/1:88,72:32:160:0.450:2	./.	./.	0/1:83,54:32:137:0.394:2	./.	./.	0/1:56,44:33:100:0.440:2	./.
chr2	47317444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr2	47378529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr2	47382300	rs815805	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,63:31:110:0.573:2	./.	./.	./.	./.	./.	./.
chr2	47382342	rs815804	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,137:31:138:0.993:2	./.	./.	./.	./.	0/1:35,44:32:79:0.557:2	0/1:28,22:30:50:0.440:2
chr2	47600671	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:30:79:0.494:2	./.	./.
chr2	47600966	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:25:112:0.045:2	./.	./.	./.
chr2	47601106	rs1126497	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,31:30:62:0.500:2	0/1:14,30:28:44:0.682:2	./.	0/1:2,72:30:74:0.973:2	./.	0/1:49,31:29:80:0.388:2	0/1:36,43:29:79:0.544:2	0/1:46,55:30:101:0.545:2	0/1:34,37:29:71:0.521:2	0/1:37,21:28:58:0.362:2	./.
chr2	47604866	rs58450758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,9:31:31:0.290:2	./.	./.	./.	./.
chr2	47606096	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,20:32:51:0.392:2	./.	./.
chr2	47630461	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2
chr2	47690201	rs63751403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	47739551	rs2303424	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,82:30:83:0.988:2	./.	0/1:26,35:30:61:0.574:2	0/1:44,37:30:81:0.457:2	0/1:3,65:29:68:0.956:2	0/1:0,65:30:65:1.00:2	0/1:24,18:31:42:0.429:2	./.
chr2	47797123	rs139772114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr2	48010558	rs1042820	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr2	48018081	rs1800932	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,35:29:84:0.417:2	0/1:37,25:29:62:0.403:2	./.	0/1:0,101:29:101:1.00:2	./.	0/1:58,61:29:119:0.513:2	./.	./.	./.	./.	./.
chr2	48023115	rs1800935	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:1,45:29:46:0.978:2	./.	0/1:0,103:30:103:1.00:2	./.	0/1:61,77:30:138:0.558:2	./.	./.	./.	./.	0/1:73,53:30:126:0.421:2
chr2	48025764	rs1800937	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:33:8:0.625:2
chr2	48026079	rs375210430	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.
chr2	48027096	rs372916347	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:89:0.045:2	./.
chr2	48032758	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,15:14:109:0.138:2
chr2	48059948	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2
chr2	48602186	rs34136171	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,74:33:158:0.474:2	0/1:39,41:33:80:0.513:2	./.	./.	./.	./.	./.	./.	0/1:96,87:34:183:0.475:2	./.	./.
chr2	48602252	rs17855177	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:103,72:32:175:0.411:2	0/1:44,62:32:106:0.585:2	./.	./.	0/1:105,85:32:190:0.447:2	0/1:116,80:32:196:0.408:2	0/1:108,81:33:189:0.429:2	./.	0/1:102,80:34:182:0.440:2	./.	0/1:102,85:33:187:0.455:2
chr2	48681868	rs76587580	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,56:32:162:0.346:2	./.	./.	./.	./.	./.
chr2	48713777	rs33994624	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:33:72:0.403:2	0/1:14,17:33:31:0.548:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:32:62:0.452:2	./.
chr2	48807796	rs17039250	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,40:33:41:0.976:2	0/1:4,21:32:25:0.840:2	./.	./.	0/1:27,11:32:38:0.289:2	./.	0/1:35,18:32:53:0.340:2	./.	./.	0/1:23,9:33:32:0.281:2	./.
chr2	48807976	rs3828340	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,77:32:78:0.987:2	0/1:1,37:32:38:0.974:2	./.	./.	0/1:34,23:32:57:0.404:2	./.	0/1:19,18:33:37:0.486:2	./.	./.	0/1:25,32:32:57:0.561:2	./.
chr2	48808152	rs940389	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,68:32:68:1.00:2	0/1:2,43:32:45:0.956:2	./.	./.	0/1:43,39:31:82:0.476:2	./.	0/1:59,53:32:112:0.473:2	./.	./.	0/1:45,46:32:91:0.505:2	./.
chr2	48808594	rs3749142	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,70:32:72:0.972:2	0/1:0,42:32:42:1.00:2	0/1:0,12:33:12:1.00:2	./.	0/1:23,24:32:47:0.511:2	0/1:38,36:33:74:0.486:2	0/1:44,40:33:84:0.476:2	./.	0/1:48,35:33:83:0.422:2	0/1:0,75:33:75:1.00:2	0/1:57,54:34:111:0.486:2
chr2	48808882	rs3749144	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,44:34:44:1.00:2	0/1:0,18:32:18:1.00:2	./.	./.	0/1:34,13:33:47:0.277:2	./.	0/1:27,38:32:65:0.585:2	./.	./.	0/1:22,39:33:61:0.639:2	./.
chr2	48808898	rs3749145	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,47:32:47:1.00:2	0/1:0,21:32:21:1.00:2	./.	./.	0/1:36,15:30:51:0.294:2	./.	0/1:31,43:32:74:0.581:2	./.	./.	0/1:23,46:32:69:0.667:2	./.
chr2	48809500	rs375300132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,42:31:90:0.467:2	./.
chr2	48809593	rs3792234	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,63:32:65:0.969:2	0/1:0,24:32:24:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:31,13:31:44:0.295:2	0/1:35,31:32:66:0.470:2	0/1:20,30:32:50:0.600:2	./.	0/1:43,35:33:78:0.449:2	0/1:0,84:32:84:1.00:2	0/1:54,41:33:95:0.432:2
chr2	48809629	rs17397707	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,50:31:93:0.543:2	./.	./.	./.	./.	./.
chr2	48822381	rs2140551	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:1,44:31:45:0.978:2	0/1:38,3:33:41:0.073:2	0/1:19,38:30:57:0.667:2	0/1:25,14:32:39:0.359:2	0/1:0,46:31:46:1.00:2	0/1:42,33:32:75:0.440:2	0/1:25,18:30:43:0.419:2	0/1:35,29:32:64:0.453:2
chr2	48873662	rs13396590	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,81:31:185:0.438:2	./.	./.	./.	./.	./.	0/1:94,82:33:176:0.466:2
chr2	48873925	rs61755864	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	./.	./.	./.	./.	0/1:73,57:33:130:0.438:2
chr2	48873978	rs10432667	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,40:33:91:0.440:2	./.	./.	0/1:63,4:31:67:0.060:2	0/1:39,44:33:83:0.530:2	./.	./.	./.
chr2	48898798	rs3920390	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:31:183:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,182:30:182:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,189:30:189:1.00:2	0/1:0,181:30:181:1.00:2	0/1:0,186:31:186:1.00:2	0/1:0,180:31:182:1.00:2	0/1:0,185:31:185:1.00:2
chr2	48915721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2
chr2	48915871	rs11125179	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,41:33:84:0.488:2	0/1:25,26:32:51:0.510:2	0/1:4,6:32:10:0.600:2	0/1:0,83:32:83:1.00:2	./.	./.	0/1:28,38:31:66:0.576:2	0/1:0,113:32:114:1.00:2	0/1:43,56:33:99:0.566:2	0/1:40,44:33:84:0.524:2	0/1:56,40:32:96:0.417:2
chr2	48921375	rs2293275	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,52:32:140:0.371:2	0/1:30,37:32:67:0.552:2	0/1:19,9:31:28:0.321:2	0/1:2,151:32:153:0.987:2	./.	0/1:0,141:32:141:1.00:2	0/1:64,61:33:125:0.488:2	0/1:0,175:32:175:1.00:2	0/1:77,74:33:151:0.490:2	0/1:71,59:32:130:0.454:2	0/1:94,95:32:189:0.503:2
chr2	48921438	rs12470652	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,39:32:95:0.411:2
chr2	48921442	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.
chr2	48948856	rs4637173	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,61:29:64:0.953:2	./.	0/1:52,40:30:92:0.435:2	./.	./.	0/1:74,62:30:136:0.456:2	./.
chr2	48960032	rs10495960	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,58:32:132:0.439:2
chr2	49003458	rs62135453	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,18:33:44:0.409:2	0/1:7,11:32:18:0.611:2	./.	./.	0/1:0,41:32:41:1.00:2	0/1:4,49:31:53:0.925:2	0/1:0,35:32:35:1.00:2	0/1:19,24:32:43:0.558:2	./.	./.	./.
chr2	49189921	rs6166	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,91:32:94:0.968:2	0/1:0,54:32:54:1.00:2	0/1:9,9:31:18:0.500:2	0/1:79,56:31:135:0.415:2	0/1:45,20:31:65:0.308:2	0/1:1,119:31:120:0.992:2	0/1:2,78:31:80:0.975:2	0/1:74,52:31:126:0.413:2	0/1:60,37:33:97:0.381:2	0/1:53,37:32:90:0.411:2	./.
chr2	49190415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	49191041	rs6165	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:30:69:0.986:2	0/1:0,48:32:48:1.00:2	0/1:3,4:31:7:0.571:2	0/1:42,38:31:80:0.475:2	0/1:46,36:31:82:0.439:2	0/1:0,59:31:59:1.00:2	0/1:0,58:32:58:1.00:2	0/1:41,43:31:84:0.512:2	0/1:45,49:32:94:0.521:2	0/1:39,17:31:56:0.304:2	./.
chr2	49196000	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2	./.	./.	./.	./.	./.
chr2	49242040	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,34:30:89:0.382:2	./.	./.	./.
chr2	49381532	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:29:79:0.051:2	./.	./.	./.	./.	./.	./.
chr2	50149144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	50149178	rs184343684	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,58:30:127:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr2	50201110	rs9636391	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:29:109:1.00:2	0/1:0,67:28:67:1.00:2	0/1:6,6:31:12:0.500:2	0/1:69,52:29:121:0.430:2	0/1:0,112:29:112:1.00:2	0/1:1,137:29:138:0.993:2	0/1:64,69:29:133:0.519:2	0/1:0,160:29:160:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,124:29:125:1.00:2	0/1:0,166:29:166:1.00:2
chr2	50464002	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:35:176:0.023:2	./.	./.
chr2	50724817	rs199784139	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:32:68:0.441:2	0/1:32,20:32:52:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	50765619	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.
chr2	51254901	rs1045874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.
chr2	53943750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:34:106:0.038:2	./.	./.	./.	./.
chr2	53955850	rs17521008	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:34:51:0.412:2	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	53956716	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.
chr2	54026181	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,19:32:160:0.119:2	./.
chr2	54035447	rs1127362	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54035508	rs2287345	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,28:33:44:0.636:2	./.	0/1:0,58:32:58:1.00:2
chr2	54041983	rs2542571	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,35:33:68:0.515:2	0/1:32,17:31:49:0.347:2	./.	./.	0/1:44,18:32:62:0.290:2	./.	./.	0/1:48,34:31:82:0.415:2	./.	./.	./.
chr2	54081806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2
chr2	54081923	rs72799239	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,24:28:37:0.649:2	./.	0/1:0,24:31:24:1.00:2
chr2	54115904	rs805400	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:29:30:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54120025	rs805408	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:32:57:0.491:2	0/1:16,21:31:37:0.568:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54120820	rs805412	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,26:33:63:0.413:2	0/1:23,18:32:41:0.439:2	./.	./.	./.	./.	./.	./.	0/1:45,43:33:88:0.489:2	./.	0/1:66,55:32:121:0.455:2
chr2	54125495	rs805417	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,40:33:74:0.541:2	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54127041	rs805423	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:84,102:33:186:0.548:2	0/1:59,45:32:104:0.433:2	./.	./.	0/1:79,36:32:116:0.313:2	./.	./.	0/1:131,61:32:192:0.318:2	0/1:105,85:33:190:0.447:2	./.	0/1:0,185:32:185:1.00:2
chr2	54133744	rs805316	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,59:30:98:0.602:2	0/1:25,27:29:52:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54135936	rs2302878	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,59:32:120:0.492:2	./.	./.	./.
chr2	54150237	rs3213775	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,28:34:76:0.368:2	./.	0/1:0,100:34:100:1.00:2
chr2	54152727	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.
chr2	54159155	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.
chr2	54197829	rs78645734	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:28:16:0.375:2
chr2	54362645	rs78531993	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,16:33:42:0.381:2	./.	0/1:29,25:31:54:0.463:2
chr2	54482964	rs843704	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	./.	0/1:41,28:33:69:0.406:2	0/1:45,29:32:74:0.392:2	./.	./.	./.
chr2	54482989	rs6740641	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,24:31:74:0.324:2	./.	./.	./.	./.	./.	./.	0/1:25,35:31:60:0.583:2
chr2	54483272	rs61736715	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,37:31:75:0.493:2	0/1:27,18:29:45:0.400:2	0/1:3,6:30:9:0.667:2	./.	0/1:56,37:30:94:0.398:2	./.	./.	./.	0/1:49,46:31:95:0.484:2	0/1:36,42:31:78:0.538:2	./.
chr2	54494448	rs1817557	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,57:33:123:0.463:2	./.	./.	./.	./.	./.	./.	0/1:92,86:33:178:0.483:2
chr2	54562012	rs55714450	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,43:32:100:0.430:2	0/1:38,26:32:64:0.406:2	0/1:11,8:31:19:0.421:2	0/1:64,54:31:119:0.458:2	./.	0/1:71,48:31:119:0.403:2	0/1:57,25:32:84:0.305:2	0/1:53,50:31:103:0.485:2	0/1:91,46:32:137:0.336:2	0/1:77,58:32:135:0.430:2	./.
chr2	54587378	rs2280717	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,26:30:62:0.419:2	./.	./.	./.	./.	0/1:35,28:32:63:0.444:2	./.
chr2	54587596	rs2280718	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,52:32:53:0.981:2	0/1:0,36:31:36:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,75:32:75:1.00:2	./.	0/1:0,67:32:67:1.00:2	0/1:0,81:32:81:1.00:2	0/1:63,42:32:105:0.400:2	0/1:0,77:33:77:1.00:2	0/1:38,25:32:63:0.397:2	0/1:38,44:32:82:0.537:2
chr2	54587659	rs13184	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:30:5:0.800:2	0/1:13,23:28:36:0.639:2	./.	0/1:19,21:28:40:0.525:2	./.	./.	./.	./.	0/1:26,22:28:48:0.458:2
chr2	54753596	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,27:31:68:0.397:2	./.	./.
chr2	54844790	rs2229506	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,49:30:127:0.386:2	0/1:37,43:32:80:0.538:2	./.	./.	./.	./.	0/1:110,80:32:190:0.421:2	./.	./.	./.	0/1:102,77:32:180:0.430:2
chr2	54858214	rs61730127	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,17:31:60:0.283:2	./.	./.
chr2	54858439	rs1804472	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,56:30:113:0.496:2	./.	./.	./.	./.	./.
chr2	54858511	rs1052788	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,26:31:75:0.347:2	0/1:30,15:31:45:0.333:2	0/1:0,17:31:17:1.00:2	0/1:68,52:31:120:0.433:2	0/1:79,58:31:138:0.423:2	./.	0/1:91,77:31:168:0.458:2	0/1:1,134:31:135:0.993:2	0/1:70,50:32:120:0.417:2	0/1:0,83:31:83:1.00:2	0/1:57,50:31:107:0.467:2
chr2	54858558	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.	./.
chr2	54858664	rs2229503	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,24:31:68:0.353:2	./.	./.
chr2	54882291	rs17344343	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,86:31:179:0.480:2	./.	./.	./.	./.	./.
chr2	54886347	rs1052820	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,28:29:56:0.509:2	0/1:15,14:31:29:0.483:2	0/1:0,10:30:10:1.00:2	0/1:34,34:29:68:0.500:2	0/1:3,54:29:57:0.947:2	./.	0/1:20,46:29:67:0.697:2	0/1:5,113:30:118:0.958:2	0/1:26,29:28:55:0.527:2	0/1:30,41:29:71:0.577:2	0/1:27,35:29:62:0.565:2
chr2	54952332	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,12:14:108:0.111:2
chr2	55040426	rs2631840	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:28:99:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,110:29:110:1.00:2	0/1:61,51:29:112:0.455:2	0/1:0,117:29:117:1.00:2	0/1:59,43:29:102:0.422:2	0/1:3,99:29:102:0.971:2	0/1:0,127:29:127:1.00:2	0/1:53,52:28:105:0.495:2	0/1:0,119:28:119:1.00:2
chr2	55043960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.
chr2	55071268	rs374203536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,44:32:90:0.489:2	./.	./.
chr2	55138123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.
chr2	55155551	rs733916	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,61:32:113:0.540:2	./.	./.	./.	0/1:65,73:32:138:0.529:2	./.	./.	./.
chr2	55176097	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:34:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr2	55177822	rs77213467	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	0/1:92,67:32:160:0.421:2	./.	./.	./.	0/1:73,59:32:133:0.447:2	0/1:68,86:31:154:0.558:2
chr2	55186394	rs17346629	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:27:3:1.00:2	0/1:8,13:26:21:0.619:2	0/1:13,8:27:21:0.381:2	0/1:12,19:24:31:0.613:2	0/1:0,23:28:23:1.00:2	0/1:13,18:28:31:0.581:2	0/1:9,7:28:16:0.438:2	0/1:11,6:27:17:0.353:2	0/1:0,26:27:26:1.00:2
chr2	55187367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:28:24:0.167:2	./.	./.	./.
chr2	55189685	rs75479836	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.	0/1:34,24:33:58:0.414:2	./.	./.
chr2	55252259	rs111958278	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:30:84:0.429:2	./.
chr2	55404794	rs14026	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:30:11:0.364:2	0/1:57,45:30:102:0.441:2	0/1:22,17:30:39:0.436:2	0/1:40,40:30:80:0.500:2	0/1:33,16:31:49:0.327:2	./.	./.	0/1:40,40:31:80:0.500:2	0/1:2,107:32:109:0.982:2
chr2	55404883	rs13032294	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:32:24:0.583:2	0/1:11,15:32:26:0.577:2	./.	./.	./.	./.	./.
chr2	55407754	rs6716066	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:31:85:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,102:31:102:1.00:2
chr2	55436934	rs9677948	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	0/1:29,14:31:43:0.326:2	./.	0/1:17,16:31:33:0.485:2	./.
chr2	55449412	rs74785222	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,37:32:90:0.411:2	0/1:33,36:32:69:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55449464	rs17852670	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,94:33:95:0.989:2	0/1:0,68:33:68:1.00:2	./.	./.	0/1:50,33:33:83:0.398:2	0/1:51,74:32:125:0.592:2	./.	./.	0/1:72,68:34:140:0.486:2	./.	0/1:99,76:33:175:0.434:2
chr2	55460017	rs2028139	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,30:31:64:0.469:2	0/1:34,49:32:83:0.590:2	./.	./.	./.	./.	./.
chr2	55470115	rs11357	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,42:31:42:1.00:2	0/1:5,185:30:190:0.974:2	0/1:122,76:30:198:0.384:2	0/1:115,80:30:196:0.410:2	0/1:4,187:31:191:0.979:2	0/1:0,191:30:191:1.00:2	0/1:117,80:32:197:0.406:2	0/1:0,192:31:192:1.00:2	0/1:113,80:31:193:0.415:2
chr2	55470161	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,7:33:184:0.038:2	./.
chr2	55470195	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,7:32:169:0.041:2	./.
chr2	55470204	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:32:166:0.042:2	./.
chr2	55476591	rs2576709	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,76:32:193:0.394:2	./.	./.	./.	./.
chr2	55481322	rs2230370	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,23:33:62:0.371:2	./.	./.	./.	0/1:36,36:31:72:0.500:2	0/1:36,43:32:79:0.544:2	./.	./.
chr2	55490788	rs1134722	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,12:30:19:0.632:2	0/1:10,15:31:25:0.600:2	./.	./.	./.	./.	./.
chr2	55490819	rs1056445	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,27:30:27:1.00:2	0/1:25,15:30:40:0.375:2	0/1:22,22:29:44:0.500:2	0/1:0,36:31:36:1.00:2	0/1:1,51:31:52:0.981:2	0/1:24,22:31:46:0.478:2	0/1:0,27:31:27:1.00:2	0/1:22,24:31:46:0.522:2
chr2	55522422	rs2589110	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:0,40:33:41:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,43:33:43:1.00:2	0/1:1,51:32:52:0.981:2	0/1:0,57:32:58:1.00:2
chr2	55544736	rs41281501	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,29:32:62:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr2	55591176	rs41281505	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:33:12:0.417:2	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55599655	rs3111411	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,53:32:133:0.398:2	0/1:60,35:32:95:0.368:2	./.	0/1:0,145:31:145:1.00:2	0/1:63,34:31:97:0.351:2	0/1:96,65:31:161:0.404:2	0/1:3,48:31:51:0.941:2	0/1:0,116:32:116:1.00:2	0/1:2,130:32:132:0.985:2	0/1:0,141:32:141:1.00:2	0/1:92,97:32:189:0.513:2
chr2	55762957	rs3762513	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.	./.	./.	0/1:37,37:30:74:0.500:2	0/1:80,36:30:116:0.310:2	0/1:95,42:31:137:0.307:2	0/1:1,82:31:83:0.988:2	0/1:91,51:31:142:0.359:2
chr2	55771161	rs1045910	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,105:33:106:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,122:32:123:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,140:33:140:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,133:32:133:1.00:2
chr2	55771169	rs1045920	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,73:32:140:0.521:2	./.	./.
chr2	55795482	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.	./.	./.	./.
chr2	55805440	rs2903704	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:28:53:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,66:28:66:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,63:28:63:1.00:2	0/1:0,66:27:66:1.00:2
chr2	55872565	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.
chr2	55873611	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:83,6:33:89:0.067:2	./.	0/1:153,8:30:161:0.050:2	./.	./.	./.	./.	0/1:174,4:34:178:0.022:2	0/1:137,8:32:145:0.055:2	./.
chr2	55883317	rs2627765	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.	0/1:155,5:33:160:0.031:2	0/1:3,61:33:64:0.953:2	0/1:61,34:32:95:0.358:2	0/1:0,130:33:130:1.00:2	0/1:0,97:33:97:1.00:2	0/1:84,63:33:147:0.429:2
chr2	55912120	rs782572	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:6,10:33:16:0.625:2	0/1:24,12:32:36:0.333:2	0/1:0,34:33:34:1.00:2	0/1:0,30:32:30:1.00:2	0/1:27,26:32:53:0.491:2
chr2	55913550	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55913557	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55913565	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55914840	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:32:15:0.600:2
chr2	56210140	rs41291173	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:32:29:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	56216090	rs41291179	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	0/1:17,24:31:41:0.585:2	./.	./.	./.	./.
chr2	56411817	rs35587531	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2
chr2	56420006	rs60028731	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	0/1:11,5:32:16:0.313:2	0/1:4,6:31:10:0.600:2	./.
chr2	56420296	rs75743618	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:33:6:0.833:2	./.	./.	./.	./.	./.	0/1:47,39:33:86:0.453:2	0/1:30,31:33:61:0.508:2	./.
chr2	56420550	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.
chr2	58275666	rs986512	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,31:29:31:1.00:2	0/1:15,11:31:26:0.423:2	0/1:0,37:29:37:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,25:30:25:1.00:2	./.	0/1:0,37:31:37:1.00:2	0/1:0,56:31:56:1.00:2
chr2	58316814	rs1051061	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,124:32:183:0.678:2	0/1:53,49:32:102:0.480:2	0/1:16,5:32:21:0.238:2	0/1:86,89:32:175:0.509:2	0/1:61,58:31:119:0.487:2	./.	0/1:2,111:32:113:0.982:2	0/1:1,156:32:157:0.994:2	./.	0/1:97,70:32:167:0.419:2	0/1:70,103:32:173:0.595:2
chr2	58350340	rs17049354	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:34:82:0.049:2
chr2	58388696	rs848291	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,68:33:116:0.586:2	0/1:28,28:32:56:0.500:2	0/1:8,12:32:20:0.600:2	0/1:76,71:32:147:0.483:2	0/1:54,49:31:103:0.476:2	0/1:1,128:32:129:0.992:2	./.	./.	0/1:0,114:33:115:1.00:2	0/1:53,51:33:104:0.490:2	0/1:110,73:32:183:0.399:2
chr2	58453930	rs79588315	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:93,92:32:185:0.497:2	0/1:64,54:32:118:0.458:2	./.	0/1:98,87:33:185:0.470:2	./.	./.	./.	./.	./.	0/1:98,68:32:166:0.410:2	./.
chr2	58468410	rs201708705	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,4:29:41:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr2	59504661	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	60687959	rs7569946	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,21:32:21:1.00:2	0/1:12,12:30:24:0.500:2	./.	0/1:12,3:32:15:0.200:2	0/1:13,10:31:23:0.435:2	0/1:0,26:32:26:1.00:2	0/1:0,13:31:13:1.00:2	0/1:7,11:31:18:0.611:2
chr2	60689522	rs61748090	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,27:30:75:0.360:2	./.	./.	./.	./.	0/1:55,48:31:103:0.466:2	./.	./.
chr2	61009813	rs67779326	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:27:8:0.750:2	./.	0/1:13,9:31:22:0.409:2	./.	./.	0/1:4,6:32:10:0.600:2	0/1:8,5:29:13:0.385:2	0/1:14,11:30:25:0.440:2
chr2	61009909	rs10197672	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,56:31:136:0.412:2	0/1:35,28:32:63:0.444:2	0/1:15,9:30:24:0.375:2	0/1:0,122:31:122:1.00:2	0/1:53,30:31:83:0.361:2	0/1:94,44:31:138:0.319:2	0/1:38,12:33:50:0.240:2	./.	0/1:2,111:31:113:0.982:2	0/1:2,103:31:105:0.981:2	0/1:0,151:32:151:1.00:2
chr2	61108996	rs842650	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	0/1:10,4:31:14:0.286:2	./.	./.	./.
chr2	61144133	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr2	61175312	rs12479056	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,36:34:69:0.522:2	0/1:28,14:32:42:0.333:2	0/1:0,15:33:15:1.00:2	0/1:44,51:32:95:0.537:2	0/1:0,67:32:67:1.00:2	0/1:0,85:32:85:1.00:2	0/1:50,41:33:91:0.451:2	0/1:50,55:32:105:0.524:2	0/1:40,46:33:86:0.535:2	0/1:0,76:32:76:1.00:2	0/1:47,52:33:99:0.525:2
chr2	61188596	rs200065642	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,17:19:81:0.210:2	./.	./.	0/1:71,24:15:95:0.253:2	0/1:62,13:12:75:0.173:2	0/1:67,19:11:86:0.221:2	0/1:73,17:11:90:0.189:2	0/1:87,21:17:110:0.194:2	0/1:97,20:11:117:0.171:2	./.	0/1:97,21:17:118:0.178:2
chr2	61275819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2
chr2	61304271	rs1729659	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:35,32:33:67:0.478:2	0/1:21,14:31:35:0.400:2	0/1:0,17:33:17:1.00:2	./.	./.	0/1:49,42:32:91:0.462:2	0/1:35,26:33:61:0.426:2	0/1:34,29:32:63:0.460:2	./.	0/1:39,37:33:76:0.487:2	./.
chr2	61310383	rs74574747	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.
chr2	61344546	rs115290120	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	61385100	rs1665258	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	0/1:40,42:31:82:0.512:2	0/1:89,66:31:155:0.426:2	0/1:69,53:31:122:0.434:2	./.	0/1:50,61:31:111:0.550:2	0/1:52,47:32:99:0.475:2	0/1:51,36:32:87:0.414:2	./.
chr2	61385105	rs1729671	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:39,43:33:82:0.524:2	0/1:81,61:31:142:0.430:2	0/1:64,46:32:110:0.418:2	./.	0/1:42,54:31:96:0.563:2	0/1:48,45:32:93:0.484:2	0/1:49,36:32:85:0.424:2	./.
chr2	61389737	rs1729674	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:31:13:0.462:2	0/1:1,119:32:120:0.992:2	0/1:38,49:32:87:0.563:2	0/1:42,81:32:123:0.659:2	./.	0/1:68,48:33:116:0.414:2	0/1:57,64:34:121:0.529:2	0/1:70,63:33:133:0.474:2	./.
chr2	61415492	rs14170	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,35:29:36:0.972:2	0/1:12,15:29:27:0.556:2	./.	./.	0/1:27,23:28:50:0.460:2	0/1:24,21:28:45:0.467:2	0/1:16,22:27:38:0.579:2	./.
chr2	61450454	rs2123111	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,17:32:17:1.00:2	0/1:0,16:31:16:1.00:2	0/1:3,3:33:6:0.500:2	./.	0/1:6,11:32:17:0.647:2	0/1:0,17:31:17:1.00:2	0/1:0,14:31:14:1.00:2	0/1:15,13:32:28:0.464:2	0/1:16,13:32:29:0.448:2	0/1:10,7:32:17:0.412:2	0/1:0,29:32:29:1.00:2
chr2	61455771	rs6730200	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,15:33:16:0.938:2	./.	./.	./.	0/1:17,6:33:23:0.261:2	./.	./.	./.	./.	0/1:12,13:33:25:0.520:2	0/1:15,14:31:29:0.483:2
chr2	61456709	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,57:33:93:0.613:2	./.	./.	./.	./.
chr2	61483548	rs72811482	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:31:39:0.513:2	./.	./.	0/1:111,80:31:191:0.419:2	0/1:107,89:31:196:0.454:2	./.	./.	./.	./.
chr2	61484258	rs149614448	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:33:13:0.615:2	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	./.	./.	./.	./.
chr2	61522123	rs13014347	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:33:119:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,143:33:143:1.00:2
chr2	61566536	rs17008405	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:32:15:0.600:2	0/1:183,4:34:187:0.021:2	./.	./.	0/1:61,55:33:116:0.474:2	./.	./.	./.	./.
chr2	61575308	rs6722430	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,157:29:158:0.994:2	0/1:0,133:29:133:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,153:29:153:1.00:2	0/1:1,156:29:157:0.994:2	0/1:1,167:29:168:0.994:2	0/1:2,165:29:167:0.988:2	0/1:0,174:30:174:1.00:2	0/1:0,147:30:147:1.00:2	0/1:0,176:29:176:1.00:2
chr2	61577435	rs2166720	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:51,25:29:76:0.329:2	0/1:16,26:30:43:0.619:2	0/1:12,4:31:16:0.250:2	./.	./.	0/1:52,47:29:99:0.475:2	0/1:40,24:30:64:0.375:2	./.	./.	./.	./.
chr2	61647901	rs778155	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,58:33:58:1.00:2	0/1:0,40:32:40:1.00:2	./.	./.	0/1:34,33:32:67:0.493:2	0/1:25,54:32:79:0.684:2	0/1:32,43:33:75:0.573:2	0/1:24,32:32:56:0.571:2	0/1:33,54:33:87:0.621:2	0/1:35,33:33:68:0.485:2	0/1:0,73:33:73:1.00:2
chr2	62065759	rs6545910	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,147:30:154:0.955:2	./.	./.	./.	./.	0/1:97,65:31:162:0.401:2	./.	./.
chr2	62066566	rs200331923	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,19:14:176:0.108:2	0/1:123,20:18:143:0.140:2
chr2	62066927	rs4672457	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,149:29:149:1.00:2	0/1:0,97:29:98:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,137:29:137:1.00:2	0/1:1,118:30:119:0.992:2	0/1:0,169:29:169:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,139:29:139:1.00:2	0/1:0,177:30:177:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,175:29:175:1.00:2
chr2	62067433	rs17513722	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,62:32:140:0.443:2	0/1:97,85:31:182:0.467:2	0/1:75,78:32:153:0.510:2	./.	0/1:90,98:33:189:0.521:2	./.	./.
chr2	62069358	rs11125895	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,26:32:66:0.394:2	0/1:19,12:32:31:0.387:2	0/1:4,3:32:7:0.429:2	./.	0/1:37,21:32:58:0.362:2	./.	./.	0/1:37,21:32:58:0.362:2	./.	./.	./.
chr2	62081012	rs4270331	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:29:66:1.00:2	0/1:0,46:29:47:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,96:30:97:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,81:30:81:1.00:2
chr2	62100380	rs76248080	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,54:30:129:0.419:2	./.	0/1:56,47:31:103:0.456:2	./.
chr2	62112222	rs35876878	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,32:30:32:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,21:27:21:1.00:2	0/1:20,9:30:29:0.310:2	0/1:6,8:26:14:0.571:2	0/1:0,30:29:30:1.00:2	0/1:21,13:31:34:0.382:2	0/1:13,12:29:25:0.480:2	./.
chr2	62228013	rs55677935	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.	./.
chr2	62450631	rs3811616	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,21:33:44:0.477:2	0/1:10,9:32:19:0.474:2	0/1:4,5:33:9:0.556:2	./.	0/1:14,16:32:30:0.533:2	0/1:17,10:32:27:0.370:2	0/1:6,9:32:15:0.600:2	./.	./.	0/1:8,9:33:17:0.529:2	./.
chr2	62450743	rs1136151	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:75,43:29:118:0.364:2	0/1:57,29:28:86:0.337:2	0/1:13,7:28:20:0.350:2	./.	0/1:70,43:29:113:0.381:2	0/1:94,70:29:164:0.427:2	0/1:57,35:30:93:0.380:2	./.	./.	0/1:81,68:30:149:0.456:2	./.
chr2	62451422	rs13393608	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,24:33:59:0.407:2	0/1:11,7:31:18:0.389:2	0/1:2,3:33:5:0.600:2	./.	0/1:29,18:32:47:0.383:2	0/1:18,23:32:41:0.561:2	0/1:13,19:32:32:0.594:2	./.	./.	0/1:8,21:32:29:0.724:2	./.
chr2	62729653	rs6713096	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,23:31:39:0.590:2	0/1:7,7:30:14:0.500:2	./.	./.	./.	./.	./.	./.	0/1:38,36:31:74:0.486:2	./.	./.
chr2	62729674	rs4672527	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,8:33:8:1.00:2	0/1:23,15:33:38:0.395:2	0/1:1,26:33:27:0.963:2	0/1:0,50:32:50:1.00:2	0/1:19,26:33:45:0.578:2	0/1:20,37:33:57:0.649:2	0/1:0,51:33:51:1.00:2	0/1:0,39:33:39:1.00:2	0/1:35,27:33:62:0.435:2
chr2	62733189	rs17854454	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,32:31:55:0.582:2	0/1:18,18:32:36:0.500:2	./.	./.	./.	./.	./.	./.	0/1:2,88:33:90:0.978:2	0/1:30,40:32:71:0.571:2	0/1:30,30:32:60:0.500:2
chr2	62733201	rs78110679	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,30:29:53:0.566:2	0/1:17,16:31:33:0.485:2	./.	./.	./.	./.	./.	./.	0/1:35,51:30:86:0.593:2	./.	./.
chr2	62733253	rs11676567	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,29:32:29:1.00:2	0/1:0,24:32:24:1.00:2	./.	./.	0/1:11,26:31:38:0.703:2	./.	./.	./.	0/1:1,49:31:50:0.980:2	0/1:18,23:32:41:0.561:2	0/1:21,16:31:37:0.432:2
chr2	62991440	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2	./.	./.	./.
chr2	62998485	rs75835972	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,52:33:88:0.591:2
chr2	63170921	rs2302567	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,28:32:90:0.311:2	./.	./.	./.	./.	./.	./.
chr2	63175759	rs150604640	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:30:60:0.450:2	0/1:18,22:29:40:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	63283178	rs17850223	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,92:32:194:0.474:2	./.	./.	./.	./.	./.	./.
chr2	63419783	rs113738692	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:31:81:0.407:2	0/1:24,8:32:32:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	63666961	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	63798725	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.
chr2	63821643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr2	63821667	rs137923103	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.
chr2	64069311	rs4671534	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2
chr2	64113480	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr2	64124722	rs11558741	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.	./.	./.	0/1:18,5:32:23:0.217:2	./.	./.
chr2	64139470	rs147421356	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:31:103:0.505:2	./.
chr2	64148455	rs187385779	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:25:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	64189566	rs17028275	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:32:30:0.567:2	./.
chr2	64327544	rs329498	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:28,26:34:54:0.481:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	./.	0/1:1,45:32:46:0.978:2	0/1:39,28:33:67:0.418:2	./.	./.	./.
chr2	64327592	rs329497	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,42:33:79:0.532:2	0/1:17,21:32:38:0.553:2	./.	./.	./.	./.	0/1:2,83:32:85:0.976:2	0/1:51,42:32:93:0.452:2	./.	./.	./.
chr2	64335394	rs17753351	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,71:29:74:0.959:2	./.	./.	./.	./.
chr2	64682792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.	./.
chr2	64780256	rs149531891	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,21:30:61:0.344:2	./.	./.	./.	./.	./.	./.
chr2	65216842	rs201175768	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.
chr2	65217089	rs7559202	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	65245365	rs759458	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:31:12:0.333:2	0/1:36,45:32:81:0.556:2	0/1:73,50:32:123:0.407:2	./.	./.	./.	./.	./.	./.
chr2	65248271	rs7563131	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:32:11:0.364:2	0/1:17,19:32:36:0.528:2	./.	./.	./.	./.	./.	./.	./.
chr2	65296798	rs7572857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,27:30:57:0.474:2	./.	./.	./.	./.	./.	./.
chr2	65298839	rs17849707	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,29:30:61:0.475:2	./.	./.	./.	./.	./.	0/1:31,24:30:55:0.436:2
chr2	65298998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:26:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	65299298	rs2723088	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:0,40:29:41:1.00:2	./.
chr2	65299300	rs2723089	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:34:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	./.
chr2	65299766	rs55952639	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:32:53:0.547:2
chr2	65300014	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,47:30:91:0.516:2	./.	./.	./.	./.
chr2	65315679	rs61748092	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:33:65:0.508:2
chr2	65315691	rs200968796	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr2	65315768	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	65325161	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.	0/1:111,6:30:117:0.051:2
chr2	65331875	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	65488436	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:32:186:0.027:2	./.	0/1:184,7:31:192:0.037:2	0/1:178,11:32:189:0.058:2	./.
chr2	65488494	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:32:160:0.031:2	./.	0/1:153,7:34:160:0.044:2	0/1:133,15:32:148:0.101:2	./.
chr2	65488509	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,7:29:143:0.049:2	./.	./.	./.	./.
chr2	65495811	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:31:164:0.030:2	./.	./.	./.	./.	./.
chr2	65495834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.
chr2	65540905	rs8827	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,36:31:62:0.581:2	0/1:14,16:31:30:0.533:2	./.	0/1:31,32:32:63:0.508:2	0/1:37,26:32:63:0.413:2	./.	0/1:37,3:31:40:0.075:2	./.	./.	0/1:0,58:31:58:1.00:2	0/1:0,45:31:45:1.00:2
chr2	65540983	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:28:11:0.364:2	./.
chr2	65541087	rs146072471	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.
chr2	65561392	rs4671658	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,10:32:25:0.400:2	0/1:7,5:32:12:0.417:2	./.	0/1:13,14:31:27:0.519:2	0/1:19,7:31:26:0.269:2	./.	./.	./.	./.	0/1:17,13:30:30:0.433:2	0/1:0,33:31:33:1.00:2
chr2	65571889	rs61748094	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,83:33:146:0.568:2	./.	./.
chr2	65571997	rs61741513	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:33:46:0.370:2	./.	./.
chr2	65604767	rs268121	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,33:31:102:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr2	66667033	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,14:11:57:0.246:2	./.	./.	./.	./.
chr2	66667046	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,5:22:55:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr2	67630476	rs13036061	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,9:30:35:0.257:2	./.	./.	0/1:10,10:31:20:0.500:2	0/1:13,7:29:20:0.350:2	./.	./.	./.
chr2	67630980	rs3770657	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,87:31:87:1.00:2	./.	0/1:0,95:31:95:1.00:2	0/1:2,81:32:83:0.976:2	0/1:0,108:31:108:1.00:2	0/1:0,126:32:126:1.00:2	0/1:35,47:31:82:0.573:2	0/1:2,113:32:115:0.983:2
chr2	67631129	rs35777125	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,25:32:55:0.455:2	./.	./.	0/1:16,15:31:31:0.484:2	0/1:25,19:33:44:0.432:2	./.	./.	./.
chr2	67631389	rs184407723	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,29:31:78:0.372:2	./.	./.	./.	./.	./.	./.	./.
chr2	67631395	rs10496153	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,30:32:82:0.366:2	./.	./.	0/1:21,22:32:43:0.512:2	0/1:48,25:32:73:0.342:2	./.	./.	./.
chr2	67631744	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,8:31:145:0.055:2
chr2	67631831	rs61740794	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,77:32:79:0.975:2	0/1:3,47:32:50:0.940:2	0/1:5,3:32:8:0.375:2	0/1:38,39:32:77:0.506:2	0/1:75,4:33:79:0.051:2	0/1:1,64:31:65:0.985:2	./.	0/1:58,33:32:91:0.363:2	0/1:2,97:33:99:0.980:2	0/1:45,23:32:68:0.338:2	0/1:3,85:32:88:0.966:2
chr2	67632125	rs3770655	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,59:31:59:1.00:2	./.	0/1:0,59:31:59:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,77:31:77:1.00:2	0/1:0,69:33:69:1.00:2	0/1:24,31:32:55:0.564:2	0/1:0,78:32:78:1.00:2
chr2	67632214	rs1063571	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,20:31:44:0.455:2	./.	./.	0/1:29,21:31:50:0.420:2	0/1:26,18:32:44:0.409:2	./.	./.	./.
chr2	68270068	rs10444	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,54:33:54:1.00:2	0/1:2,24:32:26:0.923:2	./.	0/1:54,24:33:78:0.308:2	./.	./.	0/1:57,18:32:75:0.240:2	0/1:57,17:32:74:0.230:2	0/1:64,40:32:104:0.385:2	0/1:64,24:32:88:0.273:2	./.
chr2	68274434	rs77388906	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,17:16:105:0.165:2	./.	./.	0/1:90,32:14:123:0.262:2	0/1:74,22:10:96:0.229:2	0/1:79,27:12:106:0.255:2	0/1:74,21:11:95:0.221:2	0/1:103,29:10:132:0.220:2	./.	0/1:85,17:18:103:0.167:2	0/1:95,24:15:120:0.202:2
chr2	68364478	rs13009282	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:30:15:0.733:2	0/1:45,62:30:107:0.579:2	./.	./.	0/1:38,36:29:74:0.486:2	0/1:74,50:30:124:0.403:2	./.	./.	0/1:5,99:30:104:0.952:2
chr2	68384508	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,21:32:65:0.323:2	./.	./.	./.	./.	./.
chr2	68385097	rs2044693	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,29:29:29:1.00:2	./.	0/1:32,26:31:58:0.448:2	0/1:0,44:30:44:1.00:2	0/1:41,25:30:66:0.379:2	0/1:0,51:30:51:1.00:2	0/1:0,42:30:42:1.00:2	0/1:27,29:30:56:0.518:2	0/1:31,13:29:44:0.295:2	0/1:0,66:30:66:1.00:2
chr2	68388823	rs1137930	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,68:33:68:1.00:2	0/1:0,52:32:52:1.00:2	./.	./.	0/1:0,43:32:43:1.00:2	0/1:20,48:32:68:0.706:2	0/1:12,22:32:34:0.647:2	0/1:32,29:33:61:0.475:2	0/1:54,31:34:85:0.365:2	0/1:25,37:32:62:0.597:2	./.
chr2	68401898	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.
chr2	68401928	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.
chr2	68413725	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:34:95:0.042:2	./.	./.	./.	./.
chr2	68415767	rs687	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,77:31:81:0.951:2	0/1:0,44:31:44:1.00:2	./.	./.	0/1:0,36:29:36:1.00:2	0/1:62,41:30:103:0.398:2	0/1:35,33:30:68:0.485:2	0/1:63,42:31:105:0.400:2	0/1:66,51:31:117:0.436:2	0/1:61,40:31:102:0.396:2	./.
chr2	68511584	rs735815	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,21:32:50:0.420:2	0/1:20,17:32:37:0.459:2	./.	./.	0/1:36,24:32:60:0.400:2	0/1:38,36:31:74:0.486:2	0/1:24,14:32:38:0.368:2	0/1:0,73:32:73:1.00:2	0/1:49,25:32:74:0.338:2	0/1:29,20:31:49:0.408:2	0/1:49,36:32:85:0.424:2
chr2	68546374	rs4671898	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,33:33:60:0.550:2	0/1:25,11:32:36:0.306:2	0/1:6,7:31:13:0.538:2	0/1:0,97:33:97:1.00:2	./.	0/1:50,72:32:122:0.590:2	0/1:1,132:32:133:0.992:2	0/1:80,64:32:144:0.444:2	0/1:45,48:33:93:0.516:2	0/1:0,71:31:71:1.00:2	0/1:2,86:32:88:0.977:2
chr2	68546449	rs13025842	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:28:9:0.778:2	0/1:55,33:30:88:0.375:2	./.	0/1:62,52:30:114:0.456:2	0/1:3,105:31:108:0.972:2	./.	0/1:57,34:32:91:0.374:2	0/1:36,31:29:67:0.463:2	0/1:3,66:31:69:0.957:2
chr2	68607947	rs3816281	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,23:30:43:0.535:2	0/1:5,7:31:12:0.583:2	./.	./.	0/1:13,20:30:33:0.606:2	./.	./.	0/1:12,28:29:40:0.700:2	0/1:15,30:32:45:0.667:2	0/1:18,10:31:28:0.357:2	./.
chr2	68613710	rs2070171	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:52,33:31:85:0.388:2	0/1:36,20:31:56:0.357:2	./.	0/1:49,47:31:96:0.490:2	./.	0/1:66,47:31:113:0.416:2	0/1:72,58:31:130:0.446:2	./.	0/1:59,59:32:118:0.500:2	./.	0/1:55,56:32:111:0.505:2
chr2	68622914	rs1063479	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,77:32:77:1.00:2	0/1:13,5:30:18:0.278:2	0/1:72,74:31:146:0.507:2	0/1:0,154:31:154:1.00:2	0/1:74,71:31:146:0.490:2	0/1:0,144:31:144:1.00:2	0/1:0,179:31:179:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,134:31:134:1.00:2	0/1:99,80:32:179:0.447:2
chr2	68717337	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.
chr2	68729992	rs11902811	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,27:30:83:0.325:2	./.	0/1:48,35:30:83:0.422:2	./.	./.	./.	./.
chr2	68740335	rs35925899	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,42:31:80:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr2	68753240	rs35002937	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,22:29:34:0.647:2	./.	0/1:23,23:31:46:0.500:2	./.	./.	./.	0/1:36,25:32:61:0.410:2
chr2	68765205	rs13404469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,87:32:152:0.572:2
chr2	68794528	rs6751531	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,22:31:47:0.468:2	./.	0/1:29,10:31:39:0.256:2	./.	./.	./.	0/1:50,27:31:77:0.351:2
chr2	68873071	rs7570797	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,81:29:200:0.407:2	./.	0/1:116,78:29:194:0.402:2	./.	./.	./.	./.
chr2	68882138	rs34234285	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,78:32:145:0.538:2	./.	./.	./.
chr2	68882468	rs6722313	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:31:30:1.00:2	0/1:95,89:30:184:0.484:2	./.	0/1:0,175:30:175:1.00:2	./.	./.	0/1:84,101:31:185:0.546:2	./.	./.
chr2	69040500	rs2280310	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:31:58:0.448:2	./.	./.	./.	0/1:34,24:32:58:0.414:2	./.
chr2	69040504	rs61758703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,29:31:57:0.509:2	./.	./.	./.	./.	./.	./.
chr2	69046406	rs17604346	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,22:31:36:0.611:2	./.
chr2	69049939	rs4241344	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	0/1:12,4:31:16:0.250:2	./.
chr2	69049941	rs10177248	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,4:28:16:0.250:2	./.	./.	0/1:11,9:27:20:0.450:2	./.	0/1:6,5:29:11:0.455:2	./.	./.	0/1:5,17:30:22:0.773:2	./.	0/1:12,13:26:25:0.520:2
chr2	69093312	rs2231344	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,88:32:186:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr2	69173570	rs1128272	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,11:32:38:0.289:2	./.	./.	./.	./.	./.	./.
chr2	69204629	rs35624281	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	69204671	rs9808077	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	0/1:80,52:32:132:0.394:2	./.
chr2	69300191	rs77687153	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,47:28:93:0.505:2	./.	./.	./.	./.
chr2	69300243	rs10202939	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	69372443	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:29:38:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr2	69472476	rs147959058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:26:16:0.500:2	./.	0/1:4,7:27:11:0.636:2
chr2	69627517	rs200732109	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,6:35:144:0.042:2	./.	./.
chr2	69659126	rs4453725	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,15:33:34:0.441:2	0/1:12,13:33:25:0.520:2	0/1:0,4:32:4:1.00:2	0/1:16,28:33:44:0.636:2	0/1:13,17:32:30:0.567:2	0/1:19,15:30:34:0.441:2	0/1:15,23:32:38:0.605:2	./.	0/1:0,43:33:43:1.00:2	0/1:0,31:33:31:1.00:2	0/1:2,48:32:50:0.960:2
chr2	69704046	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.
chr2	69709919	rs6721259	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,8:30:39:0.205:2	0/1:34,32:32:66:0.485:2	./.	./.	./.	./.	./.
chr2	69741609	rs2276689	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,37:31:81:0.457:2	./.	0/1:44,52:31:96:0.542:2	0/1:44,44:31:88:0.500:2	0/1:1,96:31:97:0.990:2	0/1:44,34:32:78:0.436:2	./.	./.
chr2	69741801	rs6757825	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,54:31:99:0.551:2	0/1:46,46:31:92:0.500:2	./.	./.	./.	./.	./.
chr2	69741854	rs6715776	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,89:33:90:0.989:2	0/1:1,79:31:80:0.988:2	0/1:0,99:32:99:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,99:33:100:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,89:32:89:1.00:2
chr2	69746296	rs7603932	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,49:31:109:0.450:2	./.	./.	./.	./.	./.
chr2	70015181	rs10496171	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,52:32:52:1.00:2	./.	./.	./.	0/1:25,18:32:43:0.419:2
chr2	70033584	rs2228203	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,90:31:183:0.492:2	0/1:92,88:32:181:0.489:2	./.	0/1:101,85:32:186:0.457:2
chr2	70057196	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,33:8:164:0.201:2	0/1:122,38:8:160:0.238:2	./.	./.	./.
chr2	70076854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:34:184:0.022:2
chr2	70076870	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:35:167:0.024:2	./.	./.
chr2	70088441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.
chr2	70096881	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,46:32:103:0.447:2	./.	./.	./.	./.	./.
chr2	70096973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.	./.	./.
chr2	70162534	rs2228183	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	0/1:2,143:33:145:0.986:2	0/1:85,58:32:143:0.406:2	0/1:1,185:34:187:0.995:2	./.	0/1:0,140:33:140:1.00:2
chr2	70188676	rs3796097	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:30:17:0.529:2	0/1:3,65:28:68:0.956:2	./.	./.	./.	0/1:50,41:29:92:0.451:2	0/1:0,52:29:52:1.00:2	0/1:34,34:28:68:0.500:2	0/1:20,12:26:32:0.375:2
chr2	70189141	rs77274135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.	./.	./.	./.	./.	./.
chr2	70315518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.
chr2	70377653	rs12989348	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:32:35:0.429:2	./.	0/1:22,19:31:41:0.463:2
chr2	70408591	rs148471734	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:28:51:0.078:2
chr2	70485320	rs11556184	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:32:31:0.581:2	./.	0/1:8,13:29:21:0.619:2
chr2	70488470	rs2706762	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,42:32:100:0.420:2	0/1:29,25:30:54:0.463:2	0/1:5,14:32:19:0.737:2	./.	0/1:50,31:32:81:0.383:2	0/1:51,41:31:92:0.446:2	./.	0/1:81,74:31:155:0.477:2	./.	0/1:56,47:31:104:0.456:2	./.
chr2	70515215	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.
chr2	70516458	rs75283365	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,17:33:27:0.630:2	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	0/1:17,13:32:30:0.433:2	./.	./.	./.
chr2	70524577	rs2618235	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:30:48:0.542:2	./.	./.	0/1:40,33:32:73:0.452:2	./.	0/1:25,19:32:44:0.432:2	./.	0/1:20,17:31:37:0.459:2
chr2	70677994	rs2166975	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,53:31:88:0.602:2	0/1:22,25:32:47:0.532:2	./.	./.	./.	./.	./.	0/1:84,47:31:131:0.359:2	0/1:0,124:32:124:1.00:2	0/1:38,41:31:79:0.519:2	./.
chr2	70692755	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	70900403	rs4984	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,20:31:77:0.260:2	./.	./.	0/1:0,51:32:51:1.00:2	./.	./.	./.	./.
chr2	70933414	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71004492	rs56316086	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,19:32:62:0.306:2	0/1:15,20:31:35:0.571:2	./.	./.	0/1:2,26:32:28:0.929:2	./.	./.	./.	0/1:51,20:33:71:0.282:2	./.	./.
chr2	71004494	rs56135050	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,19:32:62:0.306:2	0/1:16,20:32:36:0.556:2	./.	./.	0/1:2,26:32:28:0.929:2	./.	./.	./.	0/1:51,20:31:71:0.282:2	./.	./.
chr2	71012604	rs7566541	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,72:32:144:0.500:2	0/1:61,45:32:106:0.425:2	0/1:11,8:31:19:0.421:2	0/1:1,176:31:177:0.994:2	0/1:0,193:31:193:1.00:2	0/1:75,84:31:159:0.528:2	0/1:0,164:32:164:1.00:2	0/1:0,194:32:194:1.00:2	0/1:96,94:32:191:0.495:2	0/1:86,63:32:149:0.423:2	0/1:96,66:32:162:0.407:2
chr2	71012734	rs71647804	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,83:32:156:0.532:2	0/1:61,58:32:119:0.487:2	./.	0/1:1,161:32:162:0.994:2	0/1:0,159:32:159:1.00:2	0/1:82,81:32:163:0.497:2	0/1:0,166:32:166:1.00:2	0/1:0,183:32:183:1.00:2	0/1:112,75:33:187:0.401:2	0/1:81,76:32:157:0.484:2	0/1:94,97:32:191:0.508:2
chr2	71043461	rs722896	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,31:30:31:1.00:2	0/1:79,84:31:163:0.515:2	0/1:33,64:31:97:0.660:2	0/1:69,76:31:145:0.524:2	0/1:2,156:32:158:0.987:2	./.	0/1:97,90:32:187:0.481:2	0/1:76,72:32:148:0.486:2	./.
chr2	71043467	rs35381972	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,83:32:171:0.485:2	./.	./.	./.
chr2	71044211	rs2075221	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:32:23:0.609:2	0/1:8,4:33:12:0.333:2	0/1:8,6:31:14:0.429:2	0/1:0,15:32:15:1.00:2	./.	0/1:13,16:33:29:0.552:2	0/1:0,17:31:17:1.00:2	./.
chr2	71058184	rs13421115	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,35:31:85:0.417:2	0/1:17,17:31:34:0.500:2	./.	./.	0/1:43,28:31:71:0.394:2	0/1:46,42:31:88:0.477:2	./.	0/1:60,28:32:88:0.318:2	0/1:80,44:32:124:0.355:2	./.	0/1:47,55:32:102:0.539:2
chr2	71058226	rs2080390	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,54:32:111:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr2	71058230	rs57302492	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,68:30:128:0.531:2	./.	./.	./.
chr2	71058306	rs13383830	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,44:28:119:0.370:2	./.	./.	./.
chr2	71058835	rs741326	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,39:28:79:0.494:2	0/1:16,23:29:39:0.590:2	0/1:0,7:30:7:1.00:2	0/1:60,43:29:103:0.417:2	0/1:73,50:30:123:0.407:2	0/1:53,56:30:109:0.514:2	0/1:0,125:30:125:1.00:2	0/1:64,35:29:99:0.354:2	0/1:60,52:30:112:0.464:2	0/1:0,70:28:70:1.00:2	0/1:57,39:28:96:0.406:2
chr2	71058906	rs3213749	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:29:58:0.448:2	./.	./.	./.
chr2	71060037	rs6712863	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,41:30:85:0.482:2	./.	./.	./.
chr2	71060111	rs17006436	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71060936	rs17718987	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:114,77:33:191:0.403:2	0/1:62,30:32:92:0.326:2	./.	./.	0/1:109,60:32:169:0.355:2	0/1:114,77:32:191:0.403:2	./.	0/1:112,87:32:199:0.437:2	0/1:103,89:34:192:0.464:2	./.	0/1:120,75:33:195:0.385:2
chr2	71061001	rs72836219	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,56:30:111:0.505:2	./.	./.	./.
chr2	71061051	rs41285965	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,51:31:121:0.421:2	./.	./.	./.
chr2	71061108	rs17662453	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,54:31:100:0.540:2	./.	./.	./.	./.	./.	./.	./.
chr2	71062648	rs10489990	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,33:30:74:0.446:2	0/1:19,21:32:40:0.525:2	./.	./.	0/1:0,124:31:124:1.00:2	0/1:62,38:30:100:0.380:2	./.	0/1:57,72:31:129:0.558:2	0/1:53,60:31:113:0.531:2	0/1:0,104:30:104:1.00:2	0/1:51,63:30:114:0.553:2
chr2	71160222	rs2234500	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,25:28:66:0.379:2	./.	./.	0/1:40,21:26:61:0.344:2
chr2	71160291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:34:113:0.035:2	./.	./.	./.
chr2	71163086	rs11681642	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,24:30:24:1.00:2	0/1:2,126:30:128:0.984:2	./.	./.	./.	0/1:77,43:30:120:0.358:2	./.	./.	0/1:64,37:30:102:0.366:2
chr2	71163111	rs17853498	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,55:30:161:0.342:2	./.	./.	0/1:72,49:28:121:0.405:2
chr2	71163173	rs17720303	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,64:31:138:0.464:2	0/1:29,58:30:87:0.667:2	./.	./.	0/1:3,169:30:172:0.983:2	./.	0/1:1,186:30:187:0.995:2	./.	0/1:94,89:31:183:0.486:2	./.	./.
chr2	71170807	rs2266918	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:30:15:0.600:2	./.	0/1:14,13:32:27:0.481:2	./.	./.	0/1:8,10:30:18:0.556:2
chr2	71187104	rs114234874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,45:31:107:0.425:2
chr2	71190384	rs2072462	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:32:5:0.600:2	0/1:28,41:31:69:0.594:2	0/1:35,46:31:82:0.568:2	0/1:28,50:31:78:0.641:2	./.	0/1:46,41:31:87:0.471:2	0/1:39,31:31:70:0.443:2	0/1:0,45:31:45:1.00:2	./.
chr2	71190398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:26:46:0.087:2	./.
chr2	71211809	rs61750014	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,32:30:85:0.376:2	./.	./.	./.	./.	./.	./.	./.
chr2	71211815	rs3796098	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,37:30:90:0.411:2	0/1:3,79:31:82:0.963:2	./.	0/1:49,32:32:81:0.395:2	./.	0/1:39,36:30:75:0.480:2
chr2	71211989	rs3796099	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:30:49:0.980:2	0/1:0,31:29:31:1.00:2	0/1:5,6:30:11:0.545:2	0/1:0,58:30:58:1.00:2	0/1:61,41:30:102:0.402:2	0/1:0,81:30:81:1.00:2	0/1:2,88:30:90:0.978:2	0/1:0,81:29:81:1.00:2	0/1:0,60:32:60:1.00:2	./.	0/1:0,60:29:60:1.00:2
chr2	71212129	rs3796100	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:30:11:0.273:2	0/1:1,4:31:5:0.800:2	./.	0/1:9,7:33:16:0.438:2	./.	./.
chr2	71212130	rs61732224	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.
chr2	71212405	rs61732279	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,7:28:42:0.167:2	0/1:0,26:27:26:1.00:2	./.	0/1:22,9:30:31:0.290:2	./.	0/1:36,19:28:55:0.345:2
chr2	71221822	rs2302561	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	0/1:0,28:28:28:1.00:2	0/1:2,38:27:40:0.950:2	./.	0/1:32,8:28:40:0.200:2	./.	0/1:8,7:29:15:0.467:2
chr2	71297695	rs2287328	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,22:27:65:0.338:2	./.
chr2	71304738	rs1043701	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,45:30:96:0.469:2	./.	./.	./.	./.	0/1:42,42:31:84:0.500:2
chr2	71305456	rs6713	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:31:20:0.450:2	0/1:0,151:31:152:1.00:2	0/1:1,96:31:97:0.990:2	0/1:92,72:31:164:0.439:2	0/1:97,48:31:145:0.331:2	0/1:1,152:31:153:0.993:2	0/1:98,88:32:186:0.473:2	0/1:0,122:31:122:1.00:2	0/1:0,188:31:188:1.00:2
chr2	71351403	rs6748672	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,36:33:67:0.537:2	0/1:25,21:32:46:0.457:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:60,55:32:115:0.478:2	0/1:55,56:32:111:0.505:2	./.	0/1:54,47:33:101:0.465:2	./.	./.
chr2	71351487	rs11541017	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	0/1:29,33:31:62:0.532:2	0/1:25,16:29:41:0.390:2	0/1:0,101:31:101:1.00:2	0/1:30,40:32:70:0.571:2	0/1:27,35:30:62:0.565:2	0/1:0,70:31:70:1.00:2
chr2	71360144	rs10199088	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,57:32:86:0.663:2	0/1:23,33:32:56:0.589:2	./.	./.	./.	./.	0/1:25,53:33:78:0.679:2	./.
chr2	71360282	rs13010513	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:55,41:32:96:0.427:2	0/1:24,35:32:59:0.593:2	0/1:0,7:31:7:1.00:2	./.	./.	0/1:49,46:31:95:0.484:2	0/1:25,35:32:60:0.583:2	./.	0/1:74,81:33:155:0.523:2	./.	./.
chr2	71360625	rs1813160	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,78:32:180:0.433:2	0/1:73,52:31:125:0.416:2	./.	./.	./.	./.	0/1:117,77:32:194:0.397:2	./.
chr2	71360658	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,46:32:155:0.297:2
chr2	71365676	rs357756	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,22:31:45:0.489:2	0/1:19,14:31:33:0.424:2	./.	./.	./.	./.	0/1:24,14:31:38:0.368:2	./.
chr2	71376471	rs115361918	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,40:32:73:0.548:2	./.	./.	./.	./.	./.	./.
chr2	71376497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.
chr2	71376999	rs6574	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:161,4:32:165:0.024:2	./.	0/1:123,74:31:197:0.376:2	0/1:121,77:30:198:0.389:2	./.	./.	./.	./.	0/1:131,58:31:189:0.307:2	./.
chr2	71417065	rs357777	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,14:29:36:0.389:2	0/1:13,16:32:29:0.552:2	0/1:0,7:32:7:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,57:31:57:1.00:2	0/1:1,68:31:69:0.986:2	0/1:0,57:33:57:1.00:2	0/1:1,69:32:70:0.986:2	0/1:34,29:33:63:0.460:2
chr2	71429687	rs13001756	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,79:33:147:0.537:2	./.	0/1:73,42:30:115:0.365:2	./.	./.	./.	./.	./.
chr2	71590290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.
chr2	71631105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,5:27:91:0.055:2	./.	./.	./.
chr2	71631109	rs3732235	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71633275	rs3732233	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,53:33:108:0.491:2	0/1:45,37:32:82:0.451:2	0/1:16,7:31:23:0.304:2	0/1:1,134:32:135:0.993:2	0/1:1,91:32:92:0.989:2	0/1:3,80:32:83:0.964:2	0/1:0,90:33:90:1.00:2	0/1:2,96:33:98:0.980:2	0/1:0,119:34:119:1.00:2	0/1:61,41:32:102:0.402:2	0/1:80,47:33:127:0.370:2
chr2	71633389	rs6714975	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,40:31:88:0.455:2	0/1:28,35:31:63:0.556:2	0/1:5,12:30:17:0.706:2	0/1:2,73:30:75:0.973:2	0/1:0,53:29:53:1.00:2	0/1:1,59:30:60:0.983:2	0/1:0,60:31:61:1.00:2	0/1:0,69:31:69:1.00:2	0/1:2,66:31:68:0.971:2	0/1:45,24:30:69:0.348:2	0/1:60,39:30:99:0.394:2
chr2	71654175	rs1804020	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,22:31:49:0.449:2	0/1:15,13:32:28:0.464:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:54,43:31:97:0.443:2
chr2	71658541	rs11542286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71738987	rs34603128	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:32:42:0.548:2	0/1:5,14:33:19:0.737:2	./.	./.	./.	0/1:21,22:32:43:0.512:2	0/1:24,52:32:76:0.684:2	./.	0/1:34,30:33:64:0.469:2	0/1:0,47:32:47:1.00:2	./.
chr2	71740958	rs35392229	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,22:31:51:0.431:2	0/1:8,12:33:20:0.600:2	./.	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.
chr2	71743376	rs11903960	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,80:29:192:0.421:2	0/1:77,92:29:169:0.544:2	./.	./.	./.	0/1:94,100:30:194:0.515:2	./.	0/1:112,86:29:198:0.434:2	./.	0/1:99,95:29:194:0.490:2	./.
chr2	71747923	rs36122356	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:31:103:0.466:2
chr2	71762232	rs4852801	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,36:32:76:0.474:2	0/1:15,26:32:41:0.634:2	0/1:0,14:31:14:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,102:31:103:1.00:2	0/1:63,59:31:122:0.484:2	0/1:62,52:31:114:0.456:2	0/1:3,122:31:126:0.976:2	0/1:55,45:31:101:0.450:2	./.	./.
chr2	71762441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.
chr2	71776536	rs76402294	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,23:32:47:0.489:2	0/1:15,9:32:24:0.375:2	./.	./.	./.	0/1:48,26:33:74:0.351:2	./.	./.	./.	0/1:26,24:33:50:0.480:2	./.
chr2	71780215	rs2303596	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:29:102:1.00:2	0/1:0,79:29:79:1.00:2	0/1:12,14:27:26:0.538:2	0/1:1,151:28:152:0.993:2	0/1:87,86:28:173:0.497:2	0/1:78,84:29:162:0.519:2	0/1:1,170:29:171:0.994:2	0/1:2,181:29:183:0.989:2	0/1:0,154:29:154:1.00:2	0/1:0,128:29:128:1.00:2	0/1:3,136:28:139:0.978:2
chr2	71791292	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,12:17:116:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71795152	rs2288355	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,183:33:184:0.995:2	0/1:0,121:32:121:1.00:2	0/1:20,20:32:40:0.500:2	0/1:105,84:33:190:0.444:2	0/1:96,94:32:190:0.495:2	0/1:1,186:32:187:0.995:2	0/1:2,184:33:187:0.989:2	0/1:0,183:33:183:1.00:2	0/1:1,195:33:196:0.995:2	0/1:0,189:33:189:1.00:2	0/1:0,181:33:181:1.00:2
chr2	71795460	rs34836829	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.	./.	./.
chr2	71796998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,6:32:32:0.188:2	./.	./.	./.	./.	./.
chr2	71825707	rs79899601	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:31:39:0.385:2	0/1:20,9:32:29:0.310:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71838597	rs2303606	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:19,10:29:29:0.345:2	0/1:0,30:29:30:1.00:2	0/1:18,5:30:23:0.217:2	0/1:17,9:29:26:0.346:2	0/1:20,13:30:33:0.394:2	0/1:16,21:31:37:0.568:2	0/1:13,14:30:27:0.519:2	0/1:0,12:29:12:1.00:2
chr2	71886100	rs62145939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,36:31:90:0.400:2	./.	./.	0/1:74,62:30:136:0.456:2	0/1:48,68:30:116:0.586:2	./.	./.	./.
chr2	71906278	rs17718530	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,64:29:65:0.985:2	./.	./.	./.	./.	./.	./.
chr2	72359518	rs12478279	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr2	72361960	rs2241057	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,50:29:104:0.481:2	0/1:41,29:29:70:0.414:2	./.	0/1:98,87:30:185:0.470:2	./.	./.	0/1:107,73:29:180:0.406:2	./.	./.	./.	./.
chr2	72707874	rs653220	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,46:32:48:0.958:2	0/1:0,28:32:28:1.00:2	./.	0/1:24,38:33:62:0.613:2	0/1:27,14:31:41:0.341:2	0/1:0,64:31:64:1.00:2	./.	0/1:34,38:33:72:0.528:2	./.	0/1:17,18:33:35:0.514:2	0/1:32,31:33:63:0.492:2
chr2	72958333	rs61736520	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,137:33:141:0.993:2	0/1:2,98:32:100:0.980:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,72:33:190:0.379:2
chr2	72968477	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.
chr2	73144119	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:28:186:0.027:2	./.	./.	./.	./.
chr2	73226090	rs12233055	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,40:32:92:0.435:2	./.	./.	./.	./.	./.
chr2	73339708	rs1864488	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,99:31:100:1.00:2	0/1:0,193:30:193:1.00:2	0/1:58,63:30:121:0.521:2	0/1:0,145:31:145:1.00:2	0/1:0,150:30:150:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,62:30:62:1.00:2
chr2	73429808	rs1864492	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr2	73435601	rs17008862	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:29:54:0.407:2	0/1:0,50:30:50:1.00:2	0/1:23,16:29:39:0.410:2	./.
chr2	73452967	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,25:31:62:0.403:2	./.	./.	./.	./.	./.	./.	./.
chr2	73461483	rs1053329	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,20:32:39:0.513:2	0/1:6,11:32:17:0.647:2	./.	./.	0/1:12,4:33:16:0.250:2	./.	0/1:17,29:29:46:0.630:2	./.	./.	./.	0/1:10,14:32:24:0.583:2
chr2	73478461	rs7851	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,26:32:49:0.531:2	0/1:22,15:31:37:0.405:2	0/1:2,5:31:7:0.714:2	./.	0/1:28,33:31:61:0.541:2	./.	0/1:41,28:33:69:0.406:2	./.	./.	./.	0/1:23,28:32:51:0.549:2
chr2	73478466	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:33:64:0.094:2	./.
chr2	73479859	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,19:29:180:0.106:2	./.	./.	./.	./.
chr2	73490412	rs34363861	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,18:31:34:0.529:2	0/1:15,10:30:25:0.400:2	0/1:1,7:30:8:0.875:2	./.	0/1:39,26:29:65:0.400:2	./.	0/1:37,19:28:56:0.339:2	0/1:29,25:30:54:0.463:2	0/1:1,36:30:37:0.973:2	0/1:26,16:29:42:0.381:2	0/1:30,18:28:48:0.375:2
chr2	73491473	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,54:30:92:0.587:2	./.	./.	./.	./.
chr2	73492614	rs526106	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr2	73493746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:31:15:0.267:2
chr2	73518867	rs7558708	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:30:15:0.467:2	./.
chr2	73651967	rs3813227	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,164:32:165:1.00:2	0/1:0,99:32:99:1.00:2	0/1:24,13:32:37:0.351:2	./.	./.	./.	0/1:83,80:32:163:0.491:2	./.	./.	./.	0/1:104,93:32:197:0.472:2
chr2	73675630	rs199682595	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	73675669	rs2037814	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,18:32:18:1.00:2	0/1:0,64:32:64:1.00:2	0/1:40,43:31:83:0.518:2	0/1:0,93:32:93:1.00:2	0/1:2,88:32:90:0.978:2	0/1:0,80:32:80:1.00:2	./.	0/1:0,62:33:62:1.00:2	0/1:43,44:32:87:0.506:2
chr2	73675782	rs367641723	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:33:37:0.405:2	./.	./.	./.	./.
chr2	73675844	rs7598901	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:31:29:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,20:31:20:1.00:2	0/1:19,12:32:31:0.387:2	0/1:1,25:32:26:0.962:2	./.	0/1:0,17:32:17:1.00:2	./.
chr2	73676409	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	73677833	rs6546836	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,34:33:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:2,5:34:7:0.714:2	./.	./.	./.	0/1:16,9:31:25:0.360:2	./.	./.	./.	0/1:25,22:33:48:0.468:2
chr2	73677898	rs6546837	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,58:33:58:1.00:2	0/1:0,30:31:30:1.00:2	./.	./.	./.	./.	0/1:26,18:33:44:0.409:2	./.	./.	./.	0/1:46,20:32:66:0.303:2
chr2	73678951	rs192863498	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	73679280	rs6546838	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,42:32:42:1.00:2	0/1:0,19:33:19:1.00:2	0/1:3,9:33:12:0.750:2	./.	./.	./.	0/1:22,12:32:34:0.353:2	./.	0/1:36,3:34:39:0.077:2	./.	0/1:37,24:30:61:0.393:2
chr2	73679866	rs10496192	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,49:32:49:1.00:2	0/1:1,26:32:27:0.963:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	0/1:27,11:33:38:0.289:2	./.	./.	./.	0/1:37,24:31:61:0.393:2
chr2	73679956	rs28730854	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:29,22:33:51:0.431:2	0/1:16,5:31:21:0.238:2	0/1:3,3:33:6:0.500:2	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.
chr2	73679990	rs6724782	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:0,20:32:20:1.00:2	./.	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.	0/1:28,24:32:52:0.462:2
chr2	73680508	rs6546839	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,34:33:35:0.971:2	0/1:1,32:32:33:0.970:2	0/1:5,3:34:8:0.375:2	./.	./.	./.	0/1:23,8:32:31:0.258:2	./.	./.	./.	0/1:32,23:32:55:0.418:2
chr2	73716810	rs3820700	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	0/1:0,36:32:36:1.00:2	./.	0/1:21,13:30:34:0.382:2
chr2	73717103	rs2017116	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,19:31:29:0.655:2	./.	./.	./.	0/1:1,46:32:47:0.979:2	./.	0/1:27,22:31:49:0.449:2
chr2	73717567	rs2056486	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,34:31:36:0.944:2	0/1:0,30:31:30:1.00:2	./.	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	0/1:20,21:30:41:0.512:2
chr2	73717656	rs10193972	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:5,76:33:81:0.938:2	0/1:1,59:33:60:0.983:2	0/1:3,2:35:5:0.400:2	./.	./.	./.	0/1:30,43:33:73:0.589:2	./.	./.	./.	0/1:75,60:33:135:0.444:2
chr2	73746923	rs11884776	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,36:33:36:1.00:2	0/1:0,18:32:18:1.00:2	./.	./.	./.	./.	0/1:23,6:33:29:0.207:2	./.	./.	./.	0/1:25,34:31:59:0.576:2
chr2	73828538	rs1052161	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:31:21:0.381:2	0/1:0,134:32:134:1.00:2	0/1:100,89:31:189:0.471:2	0/1:0,152:31:152:1.00:2	0/1:111,78:32:189:0.413:2	0/1:0,174:32:174:1.00:2	./.	0/1:0,146:31:146:1.00:2	./.
chr2	73829372	rs1052162	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,144:32:146:0.986:2	0/1:4,57:32:61:0.934:2	0/1:14,9:33:23:0.391:2	./.	./.	./.	0/1:88,87:32:175:0.497:2	./.	./.	./.	0/1:80,76:32:156:0.487:2
chr2	73868328	rs13538	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,55:33:57:0.965:2	0/1:0,37:32:37:1.00:2	./.	./.	./.	./.	0/1:39,27:32:66:0.409:2	./.	./.	./.	0/1:40,49:32:89:0.551:2
chr2	73927931	rs4852974	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,66:33:66:1.00:2	0/1:45,23:33:68:0.338:2	0/1:0,74:32:74:1.00:2	0/1:0,46:32:46:1.00:2	./.	./.	0/1:0,59:32:59:1.00:2	./.
chr2	73928027	rs57478538	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:30:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	73928098	rs2001490	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:1,163:32:164:0.994:2	0/1:102,73:32:175:0.417:2	0/1:1,172:32:173:0.994:2	0/1:5,153:33:158:0.968:2	0/1:2,135:32:137:0.985:2	./.	0/1:0,114:32:114:1.00:2	./.
chr2	73928183	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:34:166:0.024:2	./.	./.	./.	./.
chr2	73928366	rs2012574	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,85:30:85:1.00:2	0/1:36,30:28:66:0.455:2	0/1:1,82:29:83:0.988:2	0/1:0,81:30:81:1.00:2	0/1:2,76:30:78:0.974:2	./.	0/1:0,64:29:64:1.00:2	./.
chr2	73957124	rs7210	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,4:29:15:0.267:2	0/1:2,96:30:98:0.980:2	0/1:49,35:30:84:0.417:2	0/1:0,121:29:121:1.00:2	0/1:0,64:30:64:1.00:2	0/1:1,95:30:96:0.990:2	./.	0/1:0,107:31:107:1.00:2	./.
chr2	73989950	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:29:58:0.069:2	./.	./.	./.	./.
chr2	74007136	rs2272051	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,15:34:20:0.750:2	0/1:0,102:32:102:1.00:2	0/1:58,51:32:109:0.468:2	0/1:2,73:32:75:0.973:2	0/1:0,85:32:85:1.00:2	0/1:0,106:32:106:1.00:2	./.	0/1:0,71:33:72:1.00:2	./.
chr2	74043902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.
chr2	74043914	rs200514281	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,32:31:83:0.386:2	./.	./.
chr2	74135440	rs149716725	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,43:31:101:0.426:2	./.
chr2	74135898	rs756128	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,68:33:68:1.00:2	0/1:30,36:32:66:0.545:2	0/1:0,71:32:71:1.00:2	./.	0/1:0,64:32:64:1.00:2	0/1:42,31:33:73:0.425:2	0/1:0,46:32:46:1.00:2	0/1:38,33:33:71:0.465:2
chr2	74143874	rs151132409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:31:62:0.419:2	./.	./.	./.
chr2	74166105	rs184770596	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74177777	rs74874677	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,69:29:146:0.473:2	0/1:42,36:29:78:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74185876	rs4777	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,35:32:35:1.00:2	0/1:2,4:31:6:0.667:2	0/1:30,26:31:56:0.464:2	0/1:24,25:32:49:0.510:2	./.	./.	0/1:40,27:31:67:0.403:2	0/1:35,38:32:73:0.521:2	0/1:3,56:32:59:0.949:2	0/1:35,34:32:69:0.493:2
chr2	74274329	rs61741171	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.	0/1:17,13:31:30:0.433:2	0/1:27,28:30:55:0.509:2	./.	./.	0/1:25,22:32:47:0.468:2
chr2	74300717	rs7560668	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,19:32:21:0.905:2	0/1:0,13:33:13:1.00:2	./.	0/1:16,8:33:24:0.333:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:1,19:32:20:0.950:2	0/1:14,20:35:34:0.588:2	./.	0/1:20,12:33:32:0.375:2
chr2	74327553	rs200937244	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,33:31:94:0.351:2	0/1:24,31:30:55:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74328439	rs60481444	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.
chr2	74369476	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr2	74386261	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:25:118:0.042:2
chr2	74448655	rs7587117	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:28:67:0.448:2	0/1:17,22:29:39:0.564:2	./.	0/1:28,34:29:62:0.548:2	0/1:26,31:29:57:0.544:2	./.
chr2	74466594	rs4853018	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,44:31:83:0.530:2	./.	0/1:36,41:31:77:0.532:2	./.	./.	0/1:35,30:31:65:0.462:2	0/1:12,39:31:51:0.765:2	./.
chr2	74469102	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:27:54:0.389:2	0/1:17,22:27:39:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74531724	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,59:29:117:0.509:2
chr2	74593556	rs369113498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:30:54:0.463:2
chr2	74594159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,5:30:96:0.052:2	./.	./.	./.	./.	./.	./.
chr2	74596527	rs17721059	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,78:30:155:0.503:2	./.	./.	./.	./.
chr2	74598751	rs201078804	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,26:32:44:0.591:2	0/1:15,4:31:19:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74641624	rs2240444	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,7:28:133:0.053:2	./.	./.	./.	0/1:46,51:28:97:0.526:2
chr2	74685748	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.	./.	./.	./.
chr2	74687550	rs8469	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:32:103:0.466:2
chr2	74687595	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,17:13:103:0.165:2	0/1:75,20:10:95:0.211:2
chr2	74687781	rs61733470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74690039	rs2268416	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:30:21:0.571:2
chr2	74690378	rs1063588	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,5:28:171:0.029:2	./.	./.	./.	./.	./.	0/1:84,64:30:148:0.432:2
chr2	74699778	rs1047911	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,45:30:97:0.464:2
chr2	74702230	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.	./.
chr2	74709270	rs376698702	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,104:31:197:0.528:2	./.	./.	./.	./.	./.
chr2	74710491	rs6707475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:30:57:0.421:2
chr2	74725144	rs6546908	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,10:32:10:1.00:2	0/1:25,34:32:59:0.576:2	0/1:0,43:32:43:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,35:31:35:1.00:2	0/1:35,28:34:63:0.444:2	0/1:0,34:32:34:1.00:2	0/1:0,21:30:21:1.00:2
chr2	74725178	rs17009998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,14:28:24:0.583:2
chr2	74726598	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2
chr2	74726607	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,6:30:104:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr2	74726637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:34:38:0.079:2
chr2	74746322	rs6546909	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,31:28:93:0.333:2
chr2	74750250	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,35:33:142:0.246:2
chr2	74756548	rs1183739	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	0/1:95,96:31:191:0.503:2	./.	./.	./.
chr2	74757756	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.
chr2	74763247	rs77706750	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:31:47:0.553:2	./.	./.	./.	./.	0/1:29,17:29:46:0.370:2
chr2	74781938	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.
chr2	74884699	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:127:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74889937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.	./.	./.
chr2	74900588	rs34617503	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:30:100:0.500:2	0/1:50,42:28:92:0.457:2	./.	./.
chr2	74902461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2
chr2	75099477	rs2229621	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:30:15:1.00:2	0/1:57,68:30:125:0.544:2	./.	0/1:59,74:30:133:0.556:2	./.	./.	./.	./.	0/1:68,69:30:137:0.504:2
chr2	75101454	rs2229622	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:28:28:1.00:2	0/1:90,98:29:188:0.521:2	./.	0/1:104,84:29:188:0.447:2	./.	./.	./.	./.	0/1:82,97:28:179:0.542:2
chr2	75105864	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	75109285	rs140362296	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:100:0.040:2
chr2	75113657	rs2229626	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,41:32:80:0.519:2	0/1:24,16:32:40:0.400:2	./.	0/1:49,48:31:97:0.495:2	./.	./.	0/1:4,97:31:101:0.960:2	0/1:71,39:31:110:0.355:2	0/1:57,45:32:102:0.441:2	0/1:0,69:31:69:1.00:2	./.
chr2	75113788	rs146476722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:33:28:0.464:2	./.	./.
chr2	75113789	rs2229627	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,18:30:28:0.643:2	0/1:1,13:30:14:0.929:2	0/1:0,7:31:7:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:17,10:31:27:0.370:2	0/1:0,47:31:47:1.00:2	0/1:18,21:31:39:0.538:2	0/1:15,13:34:28:0.464:2	0/1:0,21:31:21:1.00:2	0/1:15,8:28:23:0.348:2
chr2	75115108	rs10194657	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,58:32:104:0.558:2	0/1:29,38:32:67:0.567:2	0/1:0,18:33:18:1.00:2	0/1:1,168:33:170:0.994:2	0/1:66,67:32:134:0.504:2	0/1:70,77:32:147:0.524:2	0/1:1,156:33:157:0.994:2	0/1:76,73:32:150:0.490:2	0/1:72,65:33:137:0.474:2	0/1:0,135:32:136:1.00:2	0/1:92,73:33:166:0.442:2
chr2	75185856	rs12366	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,25:28:28:0.926:2	0/1:0,18:30:18:1.00:2	./.	0/1:1,24:28:26:0.960:2	0/1:5,14:28:19:0.737:2	./.	0/1:6,3:27:9:0.333:2	0/1:0,18:27:18:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,14:26:14:1.00:2	./.
chr2	75187281	rs77954588	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,18:31:33:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	75425728	rs6715729	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,37:32:65:0.569:2	0/1:16,23:32:39:0.590:2	0/1:5,5:31:10:0.500:2	0/1:0,107:32:107:1.00:2	0/1:55,45:33:100:0.450:2	0/1:0,94:32:94:1.00:2	0/1:74,53:32:127:0.417:2	0/1:60,49:33:109:0.450:2	0/1:0,136:33:136:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,109:33:109:1.00:2
chr2	75720372	rs11126472	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,23:30:66:0.348:2	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	75720664	rs6741778	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,46:31:47:0.979:2	0/1:2,15:32:17:0.882:2	./.	./.	0/1:23,20:32:43:0.465:2	./.	0/1:41,27:31:68:0.397:2	./.	./.	./.	0/1:18,21:31:39:0.538:2
chr2	75744918	rs2286995	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,37:31:39:0.949:2	0/1:0,27:30:27:1.00:2	0/1:0,2:27:2:1.00:2	./.	0/1:30,14:29:45:0.318:2	0/1:35,21:29:56:0.375:2	0/1:60,22:29:82:0.268:2	0/1:28,19:30:47:0.404:2	./.	./.	0/1:0,44:29:44:1.00:2
chr2	75882399	rs17689863	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,29:31:91:0.319:2	./.	0/1:71,31:31:103:0.304:2	./.	./.	./.
chr2	75893101	rs141965995	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:29:47:0.085:2	./.	./.	./.	./.	./.
chr2	75907351	rs6722682	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,18:30:49:0.367:2	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	./.	./.
chr2	75914985	rs41286003	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:32:101:0.505:2
chr2	75915035	rs1803196	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:31:53:0.472:2	./.	0/1:40,22:31:62:0.355:2	0/1:34,31:30:65:0.477:2	0/1:33,24:30:57:0.421:2	./.	./.	./.
chr2	75917161	rs41286005	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,82:33:175:0.469:2	./.	./.	./.	./.	0/1:95,68:34:163:0.417:2	./.	./.
chr2	75923413	rs7560262	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,26:33:63:0.413:2	0/1:29,36:32:65:0.554:2	0/1:23,37:31:60:0.617:2	0/1:20,21:33:41:0.512:2	0/1:28,20:33:48:0.417:2	./.	./.	./.
chr2	77745816	rs200395825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,6:31:136:0.044:2	./.
chr2	77748781	rs139031845	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.	./.	./.	./.	./.	./.
chr2	79253872	rs149297151	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,53:33:103:0.515:2	./.	./.
chr2	79253911	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.
chr2	79253947	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr2	79253948	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr2	79254261	rs452267	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:32:128:1.00:2	0/1:1,72:32:73:0.986:2	0/1:0,35:32:35:1.00:2	0/1:0,159:32:159:1.00:2	0/1:95,78:32:173:0.451:2	0/1:79,70:32:149:0.470:2	0/1:87,101:33:188:0.537:2	0/1:0,182:33:182:1.00:2	0/1:0,153:33:153:1.00:2	0/1:0,175:32:175:1.00:2	0/1:0,168:33:168:1.00:2
chr2	79255325	rs2290079	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:30,26:32:56:0.464:2	./.	0/1:36,14:32:50:0.280:2	./.	0/1:0,43:33:43:1.00:2	0/1:3,25:33:28:0.893:2	0/1:15,17:32:32:0.531:2	0/1:43,25:33:68:0.368:2
chr2	79312414	rs3739144	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,53:32:53:1.00:2	0/1:14,5:31:19:0.263:2	0/1:70,47:32:117:0.402:2	0/1:49,26:31:75:0.347:2	0/1:51,47:31:98:0.480:2	0/1:2,73:31:75:0.973:2	0/1:76,42:32:118:0.356:2	./.	./.	0/1:0,124:32:124:1.00:2
chr2	79313990	rs62640882	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,42:31:92:0.457:2	./.	./.	./.	./.	./.	./.
chr2	79349131	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,4:30:110:0.036:2	./.	./.	./.	./.	./.	./.
chr2	79350256	rs283892	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,12:30:29:0.414:2	./.	./.	./.	./.	./.	0/1:39,46:32:85:0.541:2
chr2	79350347	rs12228	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:0,46:30:46:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,32:33:32:1.00:2
chr2	79385786	rs76653007	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,18:32:110:0.165:2	0/1:55,11:32:66:0.167:2	./.	0/1:158,13:31:171:0.076:2	0/1:139,10:33:149:0.067:2	./.	0/1:159,8:33:167:0.048:2	./.	./.	0/1:135,7:31:142:0.049:2	0/1:115,7:33:122:0.057:2
chr2	79385787	rs77686105	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,20:28:109:0.183:2	0/1:55,11:32:66:0.167:2	./.	0/1:156,13:30:169:0.077:2	0/1:140,10:31:150:0.067:2	./.	0/1:159,8:31:167:0.048:2	./.	./.	0/1:135,7:30:142:0.049:2	0/1:117,7:32:124:0.056:2
chr2	79385823	rs201139260	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,5:26:98:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	80101321	rs61291641	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,21:30:43:0.488:2	0/1:14,14:30:28:0.500:2	./.	./.	./.	0/1:0,49:30:49:1.00:2	./.	0/1:22,45:29:67:0.672:2	./.	./.	./.
chr2	80529956	rs6733871	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:56,51:32:107:0.477:2	0/1:37,45:32:82:0.549:2	0/1:13,14:33:27:0.519:2	./.	./.	./.	./.	0/1:99,97:32:196:0.495:2	./.	./.	0/1:85,46:32:131:0.351:2
chr2	80530062	rs76300062	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,59:28:140:0.421:2	0/1:42,55:29:97:0.567:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	80530819	rs186584392	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:30:13:0.538:2	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	80801346	rs2228460	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,18:32:34:0.545:2	0/1:95,90:32:185:0.486:2	./.	0/1:96,91:32:187:0.487:2	0/1:95,97:33:192:0.505:2	0/1:97,85:32:182:0.467:2	0/1:101,86:32:187:0.460:2	0/1:1,156:32:157:0.994:2	0/1:93,94:32:187:0.503:2
chr2	81421230	rs13030022	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,15:26:16:0.938:2	0/1:6,6:23:12:0.500:2	0/1:0,13:27:13:1.00:2	0/1:11,4:30:15:0.267:2	0/1:0,14:27:14:1.00:2	0/1:0,13:27:13:1.00:2	0/1:8,13:28:21:0.619:2	0/1:5,14:27:19:0.737:2
chr2	84756049	rs4832089	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,57:31:57:1.00:2	0/1:1,60:31:61:0.984:2	0/1:55,22:31:77:0.286:2	./.	0/1:0,70:31:70:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,64:30:64:1.00:2
chr2	84771480	rs1037863	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,92:32:93:0.989:2	0/1:0,52:31:52:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,50:30:50:1.00:2	0/1:47,47:30:94:0.500:2	./.	0/1:0,79:31:79:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,105:32:105:1.00:2
chr2	84771567	rs1542477	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,17:30:17:1.00:2	0/1:28,16:31:44:0.364:2	./.	0/1:0,42:31:42:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,55:32:55:1.00:2
chr2	84775411	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2
chr2	84800605	rs11891970	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,89:33:90:0.989:2	0/1:0,30:32:30:1.00:2	0/1:56,40:32:96:0.417:2	./.	0/1:0,68:32:68:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,77:33:77:1.00:2
chr2	84831573	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:31:41:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	84846930	rs61743118	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:29:52:0.538:2	0/1:20,8:28:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	84848596	rs61733547	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,57:31:120:0.475:2	./.	./.	./.	./.	./.
chr2	84861723	rs7570005	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,29:32:83:0.349:2	0/1:2,68:32:70:0.971:2	./.	./.	./.	./.
chr2	84867647	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.
chr2	84880445	rs28375417	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:32:30:0.467:2	0/1:4,19:31:23:0.826:2	./.	./.	./.	./.
chr2	84880837	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.
chr2	84896628	rs17708884	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,57:31:57:1.00:2	0/1:31,22:30:53:0.415:2	0/1:27,33:32:60:0.550:2	./.	./.	./.	0/1:0,40:33:40:1.00:2	./.
chr2	84897517	rs1881095	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:33:123:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,8:34:8:1.00:2	0/1:3,122:33:125:0.976:2	0/1:0,73:32:73:1.00:2	0/1:74,70:32:144:0.486:2	./.	0/1:0,130:33:130:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,123:33:123:1.00:2	0/1:0,138:33:138:1.00:2
chr2	84921433	rs1192295	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,54:30:123:0.439:2	0/1:5,159:30:164:0.970:2	./.	./.	./.	./.
chr2	84924823	rs78190897	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:34:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	84926797	rs369172853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:32:77:0.506:2
chr2	84928399	rs200844717	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:30:95:0.421:2	./.
chr2	84932836	rs1192269	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,37:30:110:0.336:2	0/1:3,94:32:97:0.969:2	./.	./.	./.	./.
chr2	84945469	rs1192344	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:32:64:0.484:2	0/1:1,44:32:45:0.978:2	./.	./.	./.	./.
chr2	84960594	rs72832550	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,70:29:150:0.467:2	0/1:43,41:29:84:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85097590	rs1863772	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,36:30:71:0.507:2	0/1:0,78:31:78:1.00:2	./.	./.	./.	./.
chr2	85276746	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.
chr2	85536415	rs11547160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,23:30:41:0.561:2	./.	./.	./.	./.	./.	./.	./.
chr2	85549868	rs4240199	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,15:33:41:0.366:2	0/1:16,15:32:31:0.484:2	0/1:0,4:32:4:1.00:2	0/1:1,40:33:41:0.976:2	0/1:25,27:33:52:0.519:2	0/1:1,42:33:43:0.977:2	./.	0/1:42,30:32:72:0.417:2	0/1:12,23:34:35:0.657:2	0/1:27,20:32:48:0.426:2	0/1:23,29:33:52:0.558:2
chr2	85549874	rs3637	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,14:32:36:0.389:2	0/1:18,14:31:32:0.438:2	0/1:1,3:33:4:0.750:2	./.	0/1:27,26:32:53:0.491:2	0/1:0,45:32:45:1.00:2	./.	0/1:39,27:32:66:0.409:2	0/1:12,24:33:36:0.667:2	./.	0/1:26,26:33:52:0.500:2
chr2	85553784	rs1044973	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,53:31:115:0.461:2	0/1:50,40:32:90:0.444:2	0/1:0,23:30:23:1.00:2	0/1:94,86:30:180:0.478:2	0/1:82,62:30:144:0.431:2	0/1:0,172:30:172:1.00:2	0/1:184,9:31:193:0.047:2	0/1:113,76:31:189:0.402:2	0/1:99,90:32:189:0.476:2	0/1:60,85:30:145:0.586:2	0/1:79,94:30:173:0.543:2
chr2	85554080	rs4247303	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:56,39:33:95:0.411:2	0/1:27,22:32:49:0.449:2	./.	./.	0/1:31,15:32:46:0.326:2	0/1:0,82:32:82:1.00:2	./.	0/1:39,38:33:78:0.494:2	0/1:58,35:32:93:0.376:2	0/1:46,41:33:87:0.471:2	0/1:52,44:33:96:0.458:2
chr2	85555038	rs34725713	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,23:9:147:0.156:2	./.	0/1:125,23:9:148:0.155:2	./.	./.	./.	0/1:116,35:9:152:0.232:2	./.
chr2	85570403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.
chr2	85570442	rs143283662	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85570780	rs13384912	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:31:183:0.027:2	./.	./.	./.
chr2	85570797	rs201163400	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:32:158:0.032:2	./.	0/1:149,8:33:157:0.051:2	./.	./.	./.
chr2	85570849	rs4832168	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,10:32:115:0.087:2	0/1:67,11:33:78:0.141:2	./.	0/1:138,31:32:169:0.183:2	0/1:137,41:31:178:0.230:2	0/1:144,30:32:174:0.172:2	./.	0/1:135,22:32:158:0.140:2	0/1:136,21:33:157:0.134:2	./.	0/1:114,19:31:133:0.143:2
chr2	85570857	rs4832169	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,12:30:118:0.102:2	0/1:66,11:31:77:0.143:2	./.	0/1:147,36:30:184:0.197:2	0/1:144,45:30:189:0.238:2	0/1:148,37:30:187:0.200:2	./.	0/1:157,25:31:183:0.137:2	0/1:139,24:32:163:0.147:2	./.	0/1:118,20:31:139:0.145:2
chr2	85571228	rs200882656	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,23:21:81:0.284:2	0/1:57,15:19:72:0.208:2	0/1:63,16:21:79:0.203:2	./.	0/1:78,14:22:92:0.152:2	0/1:71,17:14:88:0.193:2	0/1:34,12:17:47:0.261:2	0/1:60,18:16:78:0.231:2
chr2	85571458	rs140300131	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,66:30:122:0.541:2	./.	./.	./.	./.	./.
chr2	85577310	rs139043592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85590286	rs7564372	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,17:31:46:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr2	85595818	rs955592	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,36:30:93:0.387:2	./.	0/1:52,27:31:79:0.342:2	./.	./.	./.
chr2	85617327	rs17850708	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,94:31:192:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr2	85617579	rs17851663	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,38:32:92:0.413:2	./.	./.	./.	./.	./.	./.	./.
chr2	85617913	rs17850709	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,51:32:89:0.573:2	./.	./.	./.	./.	./.	./.	./.
chr2	85617950	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:109:0.037:2	./.
chr2	85617951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,4:30:137:0.029:2	./.	./.	./.	./.	./.	./.
chr2	85622059	rs6886	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,49:28:128:0.383:2	0/1:30,24:29:54:0.444:2	0/1:7,7:29:14:0.500:2	0/1:80,89:29:169:0.527:2	0/1:78,64:29:142:0.451:2	0/1:75,52:29:127:0.409:2	0/1:4,152:29:156:0.974:2	0/1:2,151:29:153:0.987:2	0/1:91,73:30:164:0.445:2	0/1:0,149:29:150:1.00:2	0/1:77,59:28:136:0.434:2
chr2	85622066	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2	./.	./.	./.	./.	./.
chr2	85625222	rs6885	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,21:32:51:0.412:2	0/1:103,72:33:175:0.411:2	./.	0/1:97,76:32:173:0.439:2	0/1:105,82:33:188:0.439:2	0/1:99,92:33:191:0.482:2	./.	0/1:108,64:33:172:0.372:2	./.
chr2	85628745	rs2229669	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,47:31:105:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr2	85628983	rs2229668	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,44:31:121:0.364:2	./.	0/1:46,39:29:85:0.459:2	./.	0/1:62,53:30:115:0.461:2	./.	./.	./.
chr2	85629027	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,6:17:35:0.171:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85629266	rs62623452	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,61:30:158:0.386:2	./.	./.	./.	./.	./.	./.
chr2	85769711	rs1078004	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:33:129:1.00:2	0/1:0,96:32:96:1.00:2	0/1:11,7:32:18:0.389:2	0/1:110,84:32:194:0.433:2	0/1:110,81:32:193:0.424:2	./.	0/1:121,78:33:199:0.392:2	0/1:0,187:32:188:1.00:2	0/1:0,198:34:198:1.00:2	./.	./.
chr2	85769744	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:28:53:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85770106	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:34:138:0.029:2
chr2	85779006	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,72:32:150:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr2	85780107	rs10179904	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,64:32:142:0.451:2	0/1:52,37:31:89:0.416:2	./.	0/1:97,95:32:193:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr2	85780131	rs2592551	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,78:31:181:0.431:2	./.	0/1:99,70:32:170:0.414:2	0/1:107,69:31:176:0.392:2	0/1:0,145:32:146:1.00:2	./.	./.
chr2	85780536	rs699664	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,33:32:60:0.550:2	0/1:24,23:31:47:0.489:2	0/1:11,5:30:16:0.313:2	./.	0/1:38,26:32:64:0.406:2	./.	0/1:34,36:31:70:0.514:2	0/1:42,40:31:82:0.488:2	0/1:2,69:32:71:0.972:2	./.	./.
chr2	85780570	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr2	85781318	rs1254896	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,138:32:138:1.00:2	0/1:76,70:32:147:0.479:2	0/1:0,140:32:140:1.00:2	0/1:3,148:32:151:0.980:2	0/1:0,137:33:137:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,128:32:128:1.00:2
chr2	85785595	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,86:33:179:0.480:2	./.	./.
chr2	85786074	rs6751560	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,71:31:140:0.507:2	./.	./.	./.
chr2	85806266	rs3731828	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,6:26:22:0.273:2	./.	0/1:4,7:30:11:0.636:2	0/1:17,11:30:29:0.393:2	0/1:1,34:31:35:0.971:2	./.	./.
chr2	85808737	rs1009	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,101:32:188:0.537:2	0/1:91,60:32:151:0.397:2	./.	0/1:111,86:33:197:0.437:2	0/1:106,89:33:196:0.456:2	./.	0/1:117,80:32:197:0.406:2	0/1:2,195:32:197:0.990:2	0/1:2,190:33:192:0.990:2	./.	./.
chr2	85818886	rs14976	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,81:31:170:0.476:2	0/1:112,82:31:194:0.423:2	./.	./.	./.	0/1:89,97:32:186:0.522:2	./.	./.
chr2	85824039	rs1127974	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,72:29:156:0.462:2	./.	./.	./.	0/1:99,79:30:178:0.444:2	./.	./.
chr2	85826721	rs11891495	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,92:32:175:0.526:2	./.	./.	./.	0/1:88,97:33:185:0.524:2	./.	./.
chr2	85843348	rs11544042	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	./.	./.	./.
chr2	85843431	rs114838872	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.
chr2	85893741	rs1130866	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,12:31:46:0.261:2	0/1:15,6:32:21:0.286:2	0/1:2,5:32:7:0.714:2	0/1:32,33:31:65:0.508:2	0/1:60,51:31:111:0.459:2	0/1:36,26:31:62:0.419:2	0/1:54,33:31:87:0.379:2	./.	0/1:0,55:31:55:1.00:2	./.	0/1:31,27:31:58:0.466:2
chr2	85894308	rs3024798	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,44:31:89:0.494:2	0/1:45,44:31:89:0.494:2	0/1:62,59:31:121:0.488:2	0/1:56,44:32:100:0.440:2	0/1:0,109:31:109:1.00:2	0/1:0,106:32:106:1.00:2	0/1:2,66:31:68:0.971:2	./.
chr2	85924729	rs11127	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:31:13:0.231:2	0/1:2,97:31:100:0.980:2	0/1:44,27:31:71:0.380:2	0/1:58,39:30:97:0.402:2	0/1:47,49:31:96:0.510:2	./.	0/1:0,90:31:90:1.00:2	./.	./.
chr2	85925667	rs4240201	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,24:30:26:0.923:2	0/1:25,21:30:46:0.457:2	0/1:17,25:31:42:0.595:2	0/1:24,24:30:48:0.500:2	./.	0/1:0,35:32:35:1.00:2	./.	./.
chr2	85925680	rs4240202	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:1,30:30:31:0.968:2	0/1:25,22:28:47:0.468:2	0/1:18,28:30:46:0.609:2	0/1:24,27:29:51:0.529:2	./.	0/1:1,48:31:49:0.980:2	./.	./.
chr2	86079987	rs116727133	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:30:24:0.375:2	./.	./.	./.	./.
chr2	86088311	rs1138484	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:53,37:30:90:0.411:2	0/1:25,8:29:33:0.242:2	./.	0/1:51,34:31:85:0.400:2	./.	0/1:60,38:30:98:0.388:2	./.	./.	0/1:81,57:31:138:0.413:2	0/1:47,41:31:88:0.466:2	./.
chr2	86094686	rs62147538	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,6:31:19:0.316:2	0/1:17,16:32:33:0.485:2	./.	0/1:16,18:31:34:0.529:2	./.	0/1:27,14:30:41:0.341:2	./.	./.	0/1:19,23:32:42:0.548:2	0/1:28,20:32:49:0.417:2	./.
chr2	86094687	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2
chr2	86259443	rs2276626	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,83:30:85:0.976:2	0/1:0,51:31:51:1.00:2	0/1:3,6:32:9:0.667:2	0/1:64,63:30:127:0.496:2	./.	0/1:0,128:29:128:1.00:2	0/1:104,74:30:178:0.416:2	0/1:103,74:29:177:0.418:2	0/1:67,47:29:114:0.412:2	0/1:66,47:30:113:0.416:2	0/1:46,41:28:87:0.471:2
chr2	86269163	rs34892520	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,78:32:168:0.464:2	./.	./.	./.
chr2	86272758	rs1561328	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	0/1:100,87:30:187:0.465:2
chr2	86280058	rs35625755	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,99:31:172:0.576:2	./.	./.	./.	0/1:78,91:33:169:0.538:2	./.	./.
chr2	86305404	rs35239368	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86315741	rs2288120	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,50:31:50:1.00:2	0/1:11,4:30:15:0.267:2	0/1:0,134:31:134:1.00:2	0/1:2,175:31:177:0.989:2	0/1:0,147:30:147:1.00:2	0/1:5,181:31:186:0.973:2	0/1:117,77:32:194:0.397:2	0/1:0,138:32:138:1.00:2	0/1:40,45:31:85:0.529:2	0/1:86,43:31:129:0.333:2
chr2	86317037	rs4832242	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,11:33:11:1.00:2	0/1:1,75:33:76:0.987:2	0/1:0,40:32:40:1.00:2	0/1:0,62:32:62:1.00:2	0/1:1,56:33:57:0.982:2	0/1:29,37:31:66:0.561:2	0/1:0,108:34:108:1.00:2	0/1:22,39:32:61:0.639:2	0/1:45,46:32:91:0.505:2
chr2	86344237	rs3764948	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86371883	rs8244	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,34:28:34:1.00:2	0/1:0,23:30:23:1.00:2	./.	0/1:0,32:27:32:1.00:2	./.	0/1:0,43:28:43:1.00:2	0/1:19,33:30:52:0.635:2	./.	0/1:41,30:29:71:0.423:2	0/1:27,26:29:53:0.491:2	./.
chr2	86378589	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,18:31:29:0.621:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86385728	rs1131071	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	./.	0/1:26,32:32:58:0.552:2	./.	0/1:46,37:31:83:0.446:2	./.	./.
chr2	86385812	rs2228352	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86400824	rs1050301	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	0/1:0,41:31:41:1.00:2	./.	0/1:18,18:30:36:0.500:2	0/1:38,19:31:57:0.333:2	0/1:33,36:32:69:0.522:2	./.	0/1:57,72:31:130:0.558:2
chr2	86406556	rs17027011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,18:33:54:0.333:2
chr2	86422073	rs9653569	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:1,57:31:58:0.983:2	0/1:10,7:33:17:0.412:2	0/1:0,161:32:161:1.00:2	./.	0/1:0,137:33:138:1.00:2	0/1:107,74:32:181:0.409:2	./.	0/1:89,55:33:144:0.382:2	0/1:56,64:32:120:0.533:2	./.
chr2	86433240	rs10901	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,186:31:189:0.984:2	0/1:0,93:31:93:1.00:2	./.	0/1:1,194:30:195:0.995:2	./.	0/1:0,196:30:196:1.00:2	0/1:93,80:31:173:0.462:2	./.	0/1:103,91:31:194:0.469:2	0/1:102,92:31:194:0.474:2	./.
chr2	86439583	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86440718	rs11944	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,29:30:29:1.00:2	./.	0/1:19,9:33:28:0.321:2	0/1:19,22:28:41:0.537:2	0/1:22,32:31:54:0.593:2	./.	0/1:21,25:30:46:0.543:2
chr2	86481835	rs2276625	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:31:30:1.00:2	0/1:0,28:30:28:1.00:2	./.	0/1:12,28:32:40:0.700:2	0/1:21,17:32:38:0.447:2	0/1:16,20:32:36:0.556:2	./.	0/1:40,38:32:78:0.487:2
chr2	86683642	rs2030259	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,53:33:111:0.477:2	0/1:29,35:32:64:0.547:2	0/1:0,16:32:16:1.00:2	0/1:3,114:32:117:0.974:2	0/1:0,78:32:78:1.00:2	./.	0/1:31,37:33:68:0.544:2	0/1:1,122:32:123:0.992:2	0/1:0,163:33:163:1.00:2	0/1:57,65:32:122:0.533:2	0/1:92,95:33:188:0.508:2
chr2	86683960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.
chr2	86691250	rs12714187	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,52:33:109:0.477:2	0/1:25,25:32:50:0.500:2	0/1:0,13:32:13:1.00:2	0/1:2,108:33:110:0.982:2	0/1:0,75:32:75:1.00:2	./.	0/1:41,59:33:100:0.590:2	0/1:0,105:33:105:1.00:2	0/1:0,139:33:139:1.00:2	0/1:60,67:33:127:0.528:2	0/1:45,50:33:95:0.526:2
chr2	86693766	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.
chr2	86693826	rs34605051	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,46:32:96:0.479:2	0/1:40,22:32:62:0.355:2	./.	./.	./.	./.	0/1:59,58:32:117:0.496:2	0/1:84,53:32:137:0.387:2	0/1:78,62:33:140:0.443:2	./.	./.
chr2	86697428	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.
chr2	86707448	rs35269985	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,58:32:140:0.414:2	./.	0/1:98,70:32:168:0.417:2	./.	./.
chr2	86712153	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,7:30:94:0.074:2	./.	./.
chr2	86719151	rs11883727	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:33:32:0.625:2	./.
chr2	86737594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.
chr2	86756381	rs11548929	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,62:32:140:0.443:2	0/1:30,27:31:57:0.474:2	./.	./.	./.	./.	0/1:108,80:32:188:0.426:2	0/1:109,83:32:192:0.432:2	0/1:86,96:33:182:0.527:2	./.	./.
chr2	86832099	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:31:148:0.041:2
chr2	86979093	rs10186663	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,95:33:97:0.979:2	0/1:0,75:32:75:1.00:2	0/1:8,11:32:19:0.579:2	0/1:84,46:32:130:0.354:2	./.	0/1:80,64:32:144:0.444:2	0/1:0,146:32:146:1.00:2	0/1:0,125:32:125:1.00:2	0/1:93,62:34:155:0.400:2	0/1:52,50:32:102:0.490:2	0/1:0,138:33:138:1.00:2
chr2	87016506	rs3020726	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,46:32:91:0.505:2	0/1:37,25:32:62:0.403:2	./.	./.	./.	./.	0/1:30,30:33:60:0.500:2	./.
chr2	87017575	rs2229240	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,36:30:73:0.493:2	0/1:20,22:30:42:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87017662	rs2229239	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,19:32:25:0.760:2	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87042825	rs35555413	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,52:32:114:0.456:2	./.	./.	./.	./.	./.	./.	0/1:72,62:31:134:0.463:2
chr2	87069379	rs4322832	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,116:32:194:0.598:2	0/1:74,122:32:196:0.622:2	0/1:50,12:32:62:0.194:2	0/1:82,112:32:194:0.577:2	./.	0/1:162,35:32:197:0.178:2	0/1:156,43:33:199:0.216:2	0/1:166,32:33:198:0.162:2	./.	0/1:150,48:32:198:0.242:2	0/1:89,101:33:191:0.532:2
chr2	87069431	rs4514875	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,118:31:182:0.648:2	0/1:60,127:32:187:0.679:2	0/1:65,15:30:80:0.188:2	0/1:64,124:31:188:0.660:2	./.	0/1:149,49:31:198:0.247:2	0/1:136,39:31:175:0.223:2	0/1:155,41:31:196:0.209:2	./.	0/1:143,50:32:193:0.259:2	0/1:70,125:31:195:0.641:2
chr2	87069463	rs199878581	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,23:33:193:0.119:2	0/1:141,11:32:152:0.072:2	0/1:51,10:33:61:0.164:2	0/1:180,17:33:197:0.086:2	0/1:181,18:32:199:0.090:2	./.	0/1:176,22:32:198:0.111:2	./.	./.	./.	./.
chr2	87073852	rs2228022	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,83:31:187:0.444:2	./.	./.	./.	./.	./.	./.	0/1:87,84:31:171:0.491:2
chr2	87085256	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,11:31:185:0.059:2	0/1:131,7:33:138:0.051:2	0/1:31,9:32:40:0.225:2	0/1:186,11:32:197:0.056:2	0/1:171,17:32:188:0.090:2	./.	0/1:187,8:32:195:0.041:2	0/1:179,16:31:195:0.082:2	0/1:181,12:33:193:0.062:2	0/1:180,10:30:190:0.053:2	0/1:183,15:32:198:0.076:2
chr2	87085302	rs201066720	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:182,6:30:188:0.032:2	0/1:142,9:28:151:0.060:2	./.	./.	0/1:147,5:30:152:0.033:2	./.	./.	0/1:159,11:30:170:0.065:2	0/1:170,14:29:184:0.076:2	./.	./.
chr2	87198893	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,40:31:196:0.204:2	./.	./.
chr2	87204993	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,16:31:65:0.246:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87205053	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.	0/1:189,5:32:195:0.026:2	./.	./.	./.	./.	./.
chr2	87212716	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,90:33:129:0.698:2	0/1:39,55:32:94:0.585:2	./.	./.	0/1:93,25:32:118:0.212:2	./.	0/1:66,48:33:114:0.421:2	./.	0/1:98,28:34:126:0.222:2	./.	0/1:83,68:33:151:0.450:2
chr2	87212747	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	0/1:134,10:30:144:0.069:2	./.	./.	./.	./.	./.	./.	./.	0/1:179,7:32:187:0.038:2	./.
chr2	87212781	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:167,30:32:197:0.152:2	0/1:156,41:32:197:0.208:2	./.	./.	0/1:146,50:31:196:0.255:2	./.	0/1:114,80:31:194:0.412:2	./.	0/1:149,50:33:199:0.251:2	./.	0/1:150,42:32:193:0.219:2
chr2	87212868	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,34:32:191:0.178:2	0/1:141,55:31:196:0.281:2	0/1:131,21:32:152:0.138:2	0/1:178,18:31:196:0.092:2	0/1:165,31:31:196:0.158:2	0/1:161,36:33:197:0.183:2	0/1:177,19:33:196:0.097:2	0/1:183,15:33:198:0.076:2	0/1:176,19:34:195:0.097:2	0/1:146,50:32:196:0.255:2	0/1:175,20:33:195:0.103:2
chr2	87212970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:30:132:0.030:2	./.	./.	./.	./.	./.	./.
chr2	87213001	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,21:32:155:0.135:2	./.	./.	./.	./.	./.	./.	./.
chr2	87213132	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:29:79:0.051:2	./.	./.	./.	./.	./.
chr2	87213276	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,29:32:44:0.659:2	./.	./.	./.	./.	./.
chr2	87213376	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:30:35:0.400:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:21,11:31:32:0.344:2	./.	./.	./.	0/1:20,5:33:25:0.200:2	./.	0/1:16,7:32:23:0.304:2
chr2	87213758	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:36:197:0.025:2	./.	./.	./.
chr2	87213944	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,18:31:166:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr2	87214280	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87214604	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.
chr2	87214666	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87214878	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,6:28:21:0.286:2	0/1:13,4:25:17:0.235:2	./.	./.	./.	./.	0/1:19,4:26:23:0.174:2	./.	./.	./.	./.
chr2	87214900	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,4:31:18:0.222:2	./.	./.	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	0/1:11,3:31:14:0.214:2	./.
chr2	87221975	.	T	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:193,5:32:198:0.025:2	0/1:140,7:33:147:0.048:2	./.	0/1:185,11:33:196:0.056:2	0/1:186,10:31:197:0.051:2	0/1:194,5:32:199:0.025:2	0/1:168,8:33:176:0.045:2	0/1:189,10:33:199:0.050:2	0/1:194,6:33:200:0.030:2	0/1:186,9:32:195:0.046:2	0/1:183,11:33:194:0.057:2
chr2	87221978	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2
chr2	87222021	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,45:34:200:0.225:2	./.	./.	./.
chr2	87222043	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.
chr2	87224828	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,36:32:196:0.184:2	./.	./.	./.	./.	./.	./.
chr2	87239644	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,42:31:187:0.225:2	0/1:125,37:32:162:0.228:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87239696	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:144,33:32:177:0.186:2	0/1:134,55:32:189:0.291:2	./.	./.	0/1:164,29:32:195:0.150:2	./.	0/1:157,32:32:189:0.169:2	./.	0/1:147,39:32:186:0.210:2	./.	0/1:150,44:32:194:0.227:2
chr2	87243501	rs199986885	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,96:34:197:0.487:2	0/1:88,106:32:194:0.546:2	./.	./.	0/1:151,47:32:198:0.237:2	./.	0/1:159,40:33:199:0.201:2	./.	0/1:156,39:35:195:0.200:2	./.	0/1:154,41:33:195:0.210:2
chr2	87755041	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,19:32:148:0.128:2	0/1:170,16:30:186:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87755101	rs201261668	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,84:32:103:0.816:2	0/1:115,74:32:189:0.392:2	./.	0/1:17,160:32:177:0.904:2	0/1:110,84:32:194:0.433:2	./.	./.	0/1:115,73:33:188:0.388:2	0/1:27,150:32:177:0.847:2
chr2	87755162	rs144282529	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,7:34:192:0.036:2
chr2	87779728	rs78050112	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,40:32:101:0.396:2	./.	0/1:59,24:33:83:0.289:2	./.	./.	./.
chr2	87779747	rs200640242	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,32:29:93:0.344:2	./.	0/1:66,23:28:89:0.258:2	./.	./.	./.
chr2	87779776	rs80292941	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,30:32:81:0.370:2	./.	0/1:56,20:31:76:0.263:2	./.	./.	./.
chr2	87808754	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:184,13:31:197:0.066:2	0/1:176,7:32:183:0.038:2	./.	0/1:191,5:32:196:0.026:2	0/1:172,11:31:183:0.060:2	./.	0/1:185,14:30:199:0.070:2	./.	0/1:187,6:31:193:0.031:2	./.	0/1:185,14:32:199:0.070:2
chr2	88053077	rs199957503	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:121,76:33:197:0.386:2	0/1:114,80:33:194:0.412:2	./.	./.	0/1:162,38:33:200:0.190:2	./.	0/1:157,42:34:199:0.211:2	./.	0/1:161,37:34:198:0.187:2	./.	0/1:161,33:33:194:0.170:2
chr2	88056885	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:152,35:30:188:0.187:2	0/1:154,40:31:194:0.206:2	./.	./.	0/1:165,33:31:198:0.167:2	./.	0/1:165,25:32:190:0.132:2	./.	0/1:157,32:33:189:0.169:2	./.	0/1:160,34:32:194:0.175:2
chr2	88056937	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,41:32:154:0.266:2	0/1:102,32:32:134:0.239:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88071741	rs202128504	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,35:32:196:0.179:2	./.	./.	./.	./.	./.	./.
chr2	88074523	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr2	88074545	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,43:32:192:0.224:2	./.	./.	./.
chr2	88074588	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,6:27:114:0.053:2	./.	./.	0/1:135,9:30:144:0.063:2	./.	./.	0/1:138,4:32:142:0.028:2
chr2	88074591	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:31:132:0.030:2	0/1:107,5:29:112:0.045:2	0/1:126,18:31:144:0.125:2	0/1:110,8:32:118:0.068:2	./.	./.	./.	./.
chr2	88081665	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88081687	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:27:15:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88081899	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.
chr2	88082285	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.
chr2	88082621	rs199539996	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,48:31:195:0.246:2	./.	./.	./.	./.	./.	./.	./.
chr2	88083189	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,12:31:25:0.480:2	0/1:5,8:30:13:0.615:2	./.	./.	0/1:30,6:29:36:0.167:2	./.	0/1:13,6:30:19:0.316:2	./.	0/1:14,8:30:22:0.364:2	./.	0/1:16,6:30:22:0.273:2
chr2	88083289	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,20:32:67:0.299:2	./.	./.	./.	./.	./.
chr2	88083433	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,6:29:110:0.055:2	./.	./.	./.	./.	./.
chr2	88083541	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:32:19:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88083544	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:30:134:0.030:2	./.	./.	./.	./.	./.
chr2	88083564	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,12:32:154:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr2	88083697	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,33:32:188:0.176:2	0/1:161,35:33:196:0.179:2	0/1:115,5:29:120:0.042:2	0/1:179,12:32:191:0.063:2	0/1:171,26:31:197:0.132:2	0/1:177,18:31:195:0.092:2	0/1:171,28:32:199:0.141:2	0/1:188,9:33:197:0.046:2	0/1:187,6:33:193:0.031:2	0/1:157,33:31:190:0.174:2	./.
chr2	88083784	rs199618447	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:148,32:33:180:0.178:2	0/1:108,31:32:139:0.223:2	./.	./.	0/1:103,34:32:137:0.248:2	./.	0/1:86,51:31:137:0.372:2	./.	0/1:121,34:32:155:0.219:2	./.	0/1:129,32:32:161:0.199:2
chr2	88083818	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:33:163:0.025:2	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88083849	rs200044571	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,98:33:119:0.824:2	0/1:15,59:32:74:0.797:2	0/1:9,4:33:13:0.308:2	./.	0/1:87,29:31:116:0.250:2	./.	0/1:51,33:33:84:0.393:2	./.	0/1:65,20:33:85:0.235:2	./.	0/1:84,70:33:155:0.455:2
chr2	88091570	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,8:31:60:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88094637	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2	./.	./.	./.	./.	./.	./.
chr2	88094649	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,5:29:199:0.025:2	./.	./.	./.	./.	./.	./.
chr2	88097670	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,46:32:200:0.230:2	./.	./.
chr2	88327387	rs12999878	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,31:32:56:0.554:2	./.
chr2	88383970	rs61748137	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,66:33:155:0.429:2	./.	0/1:62,58:33:120:0.483:2
chr2	88387403	rs1542088	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,71:29:124:0.587:2	0/1:40,42:31:82:0.512:2	0/1:0,20:30:20:1.00:2	0/1:63,107:29:171:0.629:2	./.	./.	0/1:0,181:28:182:1.00:2	./.	0/1:82,97:31:179:0.542:2	0/1:60,67:29:127:0.528:2	./.
chr2	88387407	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,22:9:106:0.208:2	./.	0/1:103,19:12:122:0.156:2	./.	./.	./.
chr2	88387557	rs1542087	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,73:29:156:0.468:2	0/1:0,162:28:162:1.00:2	./.	./.	./.	./.	./.	./.
chr2	88396120	rs2919882	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,32:29:94:0.340:2	0/1:35,22:31:57:0.386:2	0/1:11,4:31:15:0.267:2	0/1:69,57:31:126:0.452:2	0/1:1,55:30:56:0.982:2	0/1:88,53:31:141:0.376:2	./.	0/1:81,45:31:126:0.357:2	0/1:55,24:29:80:0.304:2	0/1:67,37:30:105:0.356:2	0/1:65,24:30:89:0.270:2
chr2	88396123	rs2970912	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,32:32:97:0.330:2	0/1:35,21:33:56:0.375:2	0/1:11,4:31:15:0.267:2	0/1:72,57:33:129:0.442:2	0/1:1,55:32:56:0.982:2	0/1:93,53:33:146:0.363:2	./.	0/1:83,45:33:128:0.352:2	0/1:56,24:33:80:0.300:2	0/1:69,38:32:107:0.355:2	0/1:65,24:31:89:0.270:2
chr2	88396174	rs2919881	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,47:29:121:0.388:2	0/1:38,21:29:59:0.356:2	0/1:11,8:30:19:0.421:2	0/1:80,71:29:151:0.470:2	0/1:1,83:29:84:0.988:2	0/1:85,69:29:154:0.448:2	./.	0/1:99,61:29:160:0.381:2	0/1:77,55:30:132:0.417:2	0/1:72,57:29:129:0.442:2	0/1:78,40:29:118:0.339:2
chr2	88407959	rs2970918	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,98:30:98:1.00:2	0/1:0,112:30:112:1.00:2	./.	./.	./.	./.	./.	0/1:41,40:30:81:0.494:2
chr2	88424066	rs2241883	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,4:29:19:0.211:2	0/1:99,57:32:156:0.365:2	./.	./.	0/1:91,68:33:159:0.428:2	0/1:86,69:33:155:0.445:2	0/1:61,67:34:128:0.523:2	./.	./.
chr2	88425751	rs184923111	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,84:31:192:0.438:2	./.	./.	./.	./.	./.	./.
chr2	88472791	rs4129190	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,8:29:19:0.421:2	0/1:4,4:32:8:0.500:2	0/1:0,7:29:7:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,16:32:16:1.00:2	0/1:6,5:31:11:0.455:2	0/1:0,35:32:35:1.00:2	0/1:0,25:33:25:1.00:2	0/1:9,5:31:14:0.357:2	0/1:0,23:32:23:1.00:2
chr2	88474214	rs143431033	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,87:29:195:0.446:2	./.	./.	./.	./.
chr2	88482258	rs35051888	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:29:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88874891	rs1805165	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:19,27:33:46:0.587:2	0/1:12,10:31:22:0.455:2	0/1:0,34:32:34:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:19,17:33:36:0.472:2	./.	0/1:1,40:33:41:0.976:2
chr2	88879131	rs1805164	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:12,18:31:30:0.600:2	./.	0/1:16,27:32:43:0.628:2	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.
chr2	88885555	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88895123	rs13045	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:29:9:1.00:2	0/1:71,55:29:126:0.437:2	0/1:46,26:28:72:0.361:2	0/1:0,118:29:118:1.00:2	./.	0/1:67,67:29:134:0.500:2	0/1:84,66:30:151:0.440:2	./.	0/1:0,131:29:131:1.00:2
chr2	88913273	rs867529	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:2,15:32:17:0.882:2	./.	0/1:20,16:31:36:0.444:2	0/1:23,24:31:47:0.511:2	./.	./.	0/1:0,39:32:39:1.00:2	0/1:25,21:33:46:0.457:2	0/1:2,32:33:34:0.941:2	./.
chr2	89160062	rs78304725	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	./.	./.
chr2	89160071	rs375138838	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,14:32:65:0.215:2
chr2	89160111	rs375348000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:32:52:0.346:2
chr2	89160113	rs188703994	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,8:33:50:0.160:2
chr2	89160125	rs371870153	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.
chr2	89160130	rs143789163	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:34:34:0.088:2
chr2	89160133	rs371065981	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89160366	rs374263130	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:32:30:0.633:2	./.	./.	./.	./.	./.
chr2	89160377	rs111362472	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:33:32:0.125:2
chr2	89160380	rs369482255	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:30:35:0.118:2
chr2	89160383	rs370250567	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:26:37:0.111:2
chr2	89160394	rs185021767	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,12:31:40:0.300:2
chr2	89160397	rs141201227	C	T,G	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:33:30:0.133:2	./.	./.	./.	0/1:32:40:0.425:2
chr2	89160407	rs145002796	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,5:30:34:0.147:2	./.	./.	./.	./.
chr2	89160420	rs375632806	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:30:30:0.400:2	./.
chr2	89160435	rs190727741	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,5:33:26:0.192:2	./.	./.	./.	./.	./.	./.
chr2	89160450	rs192319381	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:32:27:0.148:2	./.	./.	./.	./.	./.	./.
chr2	89160457	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:32:35:0.400:2
chr2	89160463	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:27:34:0.118:2
chr2	89160724	rs137877271	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.	./.	./.
chr2	89160727	rs372752310	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.
chr2	89160737	rs374307940	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,8:31:41:0.195:2	./.
chr2	89160740	rs375352031	A	G,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:32:38:0.105:2	./.	./.	./.	0/1:33:42:0.190:2	./.
chr2	89160747	rs368685523	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,8:34:31:0.258:2	./.	./.	./.	./.
chr2	89160764	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:32:41:0.220:2
chr2	89160770	rs369861497	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,9:31:37:0.243:2
chr2	89160791	rs139114112	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr2	89160801	rs114010559	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.	./.	./.	./.	./.	./.
chr2	89160802	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,11:30:20:0.550:2	./.	./.	./.	./.	./.	./.
chr2	89161005	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:32:46:0.065:2
chr2	89161017	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,14:29:53:0.264:2	./.	./.	./.	./.	./.	./.
chr2	89161030	rs370359529	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,13:30:55:0.236:2	./.	./.	./.	./.	./.	./.
chr2	89161063	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,8:33:55:0.145:2	./.	./.	./.	./.	./.	./.
chr2	89161068	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.	./.
chr2	89161069	rs113458930	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,27:33:54:0.500:2	./.	./.	./.	./.	0/1:46,9:32:55:0.164:2	./.
chr2	89161072	rs113539064	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,27:33:52:0.519:2	./.	./.	./.	./.	0/1:48,9:33:57:0.158:2	./.
chr2	89161090	rs368862045	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:34:8:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr2	89161368	rs190332567	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89185464	rs139176691	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:32:25:0.280:2
chr2	89185466	rs186837913	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:29:26:0.269:2
chr2	89185519	rs182045278	G	A,C	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31:14:0.714:2	0/2:32:39:0.692:2	./.	./.	./.	./.	0/1:31:12:0.250:2
chr2	89185556	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.
chr2	89185620	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:27:21:0.476:2	./.	./.	./.	./.
chr2	89185651	rs375238504	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:33:17:0.235:2
chr2	89185652	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:34:18:0.222:2
chr2	89185664	rs192141151	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:30:26:0.577:2	./.	./.	./.	./.
chr2	89196811	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,20:31:30:0.667:2
chr2	89196839	rs372412682	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,17:31:26:0.654:2
chr2	89197105	rs189117859	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:32:27:0.333:2	./.	./.	./.	./.
chr2	89197115	rs368827351	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:33:16:0.313:2
chr2	89197190	rs55661410	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,27:31:27:1.00:2	./.	./.	./.	./.
chr2	89246861	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.
chr2	89246942	rs201861379	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,2:36:6:0.333:2	./.	./.	./.
chr2	89246951	rs10865492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,29:30:29:1.00:2	./.	./.	./.	./.
chr2	89247011	rs377378234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,8:30:27:0.308:2	./.	./.	./.	./.	./.	./.
chr2	89247012	rs146302149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:29:28:0.286:2	./.	./.	./.	./.	./.	./.
chr2	89247013	rs374936658	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:26:28:0.286:2	./.	./.	./.	./.	./.	./.
chr2	89247065	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:33:12:0.417:2	./.	./.	./.	./.	./.	./.
chr2	89265862	rs200322104	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:27:9:0.333:2	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.
chr2	89265904	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr2	89266057	rs112636307	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.	./.	./.
chr2	89278080	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:29:50:0.120:2	./.	0/1:122,17:29:139:0.122:2	0/1:9,3:29:12:0.250:2	./.	./.	0/1:94,5:26:100:0.051:2	0/1:109,5:28:114:0.044:2
chr2	89278103	rs144594870	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:32:7:0.857:2	0/1:9,7:29:16:0.438:2	./.	./.	./.
chr2	89278489	rs6712880	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:30:30:1.00:2	0/1:12,9:30:21:0.429:2	./.	./.	./.
chr2	89291932	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:33:23:0.143:2	./.	./.	./.
chr2	89291975	rs374743419	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.	./.
chr2	89291984	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:32:36:0.083:2	./.	./.	./.	./.
chr2	89291985	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2
chr2	89292121	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.
chr2	89292182	rs59175543	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:13,6:32:19:0.316:2	./.	./.	./.
chr2	89292201	rs35262290	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:30:30:1.00:2	./.	./.	./.	./.
chr2	89292401	rs143871003	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.	./.	./.	./.	0/1:0,12:33:12:1.00:2	0/1:4,4:34:8:0.500:2	./.	./.	./.
chr2	89309542	rs150068501	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:32:19:1.00:2	0/1:9,12:34:21:0.571:2	./.	./.	./.
chr2	89309554	rs147109427	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,16:31:16:1.00:2	0/1:8,10:32:18:0.556:2	./.	./.	./.
chr2	89309631	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,6:32:55:0.109:2	./.	./.	./.	./.	./.
chr2	89309689	rs181502935	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,44:31:58:0.759:2	./.	./.	0/1:2,13:33:15:0.867:2	./.	./.
chr2	89309735	rs80322626	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:33:30:1.00:2	0/1:0,4:34:4:1.00:2	./.	./.	./.
chr2	89309762	rs77800356	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:31:22:1.00:2	0/1:0,4:28:4:1.00:2	./.	./.	./.
chr2	89326674	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,5:32:161:0.031:2	./.	./.	./.	./.	./.	./.
chr2	89326719	rs371030967	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,6:32:53:0.113:2	./.	./.	./.
chr2	89326722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.
chr2	89326732	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,16:31:120:0.133:2	./.	./.	./.	./.	./.	./.
chr2	89326756	rs368012941	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,17:29:100:0.170:2	./.	./.	./.	./.	./.	./.
chr2	89326774	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,5:33:119:0.042:2
chr2	89326794	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	0/1:56,3:33:59:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326795	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,5:33:102:0.049:2
chr2	89326842	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,12:32:52:0.231:2	0/1:42,8:33:50:0.160:2	./.	./.	./.	./.	./.	0/1:66,14:31:81:0.175:2	0/1:20,20:31:40:0.500:2	0/1:40,3:35:43:0.070:2	./.
chr2	89326871	rs61748348	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,5:31:71:0.070:2	./.	./.	./.	./.	./.	./.
chr2	89326880	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.
chr2	89326890	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,23:31:79:0.291:2	./.	./.	./.	./.	./.	./.
chr2	89326902	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326938	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:29:174:0.029:2	./.	./.	./.
chr2	89326943	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,5:31:23:0.217:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326944	rs368509306	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:30:24:0.208:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326952	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,8:30:153:0.052:2	0/1:120,5:32:125:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326953	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,12:32:153:0.078:2	0/1:117,8:32:125:0.064:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89327109	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,35:32:93:0.376:2
chr2	89339720	rs201623217	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,70:31:198:0.357:2	./.	./.	./.
chr2	89340118	rs202241783	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:32:174:0.029:2	./.	./.	./.
chr2	89340185	rs199853958	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,11:30:139:0.079:2	./.	./.	./.
chr2	89340208	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,6:30:113:0.053:2	./.	./.	./.
chr2	89340213	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:30:139:0.029:2	./.	./.	./.	./.	./.
chr2	89340218	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	0/1:130,4:30:134:0.030:2	./.	./.	./.	./.	./.
chr2	89384676	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,67:32:187:0.358:2	./.	./.
chr2	89384748	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:29:98:0.041:2	./.	./.	./.	./.
chr2	89384785	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.
chr2	89384835	rs201655736	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,10:31:117:0.085:2	./.	./.	./.	./.	./.
chr2	89384944	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,62:33:193:0.323:2	./.	./.
chr2	89399530	rs2848409	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89399559	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.	./.
chr2	89399568	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:33:104:0.048:2	0/1:50,4:31:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89399607	rs376332623	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,13:31:134:0.097:2	0/1:56,8:29:64:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89399635	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.
chr2	89399645	rs373703006	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,15:30:153:0.100:2	0/1:59,10:31:69:0.145:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89399816	rs181683159	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:35:55:0.055:2	./.	./.
chr2	89416990	rs111436329	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,9:31:25:0.360:2	0/1:8,7:30:15:0.467:2	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.
chr2	89417087	rs181054320	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:28:29:0.138:2	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89417090	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89417091	rs369036924	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89417121	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:49,8:33:57:0.140:2	0/1:17,5:32:22:0.227:2	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.
chr2	89417126	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:28:61:0.098:2	0/1:19,4:31:23:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89417234	rs2848370	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,7:34:66:0.106:2	0/1:32,6:31:38:0.158:2	./.	0/1:89,6:31:95:0.063:2	0/1:30,12:31:42:0.286:2	0/1:61,8:32:69:0.116:2	./.	0/1:24,3:31:27:0.111:2	./.	./.	0/1:84,8:30:92:0.087:2
chr2	89442163	rs375984857	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:152,10:33:162:0.062:2	0/1:104,6:31:110:0.055:2	./.	0/1:143,5:31:148:0.034:2	0/1:137,16:32:153:0.105:2	0/1:133,8:32:141:0.057:2	./.	0/1:125,4:32:130:0.031:2	0/1:116,4:33:120:0.033:2	./.	0/1:144,6:32:150:0.040:2
chr2	89442171	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2
chr2	89442184	rs377039999	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,8:32:116:0.071:2	0/1:81,8:32:90:0.090:2	./.	0/1:131,6:30:137:0.044:2	0/1:120,13:30:136:0.098:2	0/1:96,6:31:105:0.059:2	./.	0/1:106,4:32:112:0.036:2	./.	./.	0/1:136,6:32:143:0.042:2
chr2	89442193	rs1134775	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.	./.	./.	./.
chr2	89442219	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,5:33:59:0.085:2	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.
chr2	89442284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,6:27:112:0.054:2	./.	./.	./.	./.	./.
chr2	89442289	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,9:29:113:0.080:2	./.	./.	./.	./.	./.
chr2	89459267	rs395483	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:33:190:0.032:2	./.	./.	./.
chr2	89459357	rs200695449	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,27:31:73:0.375:2	0/1:21,11:32:32:0.344:2	./.	./.	./.	./.	0/1:10,11:29:21:0.524:2	./.	./.	./.	./.
chr2	89475825	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,31:32:168:0.185:2	./.	./.	./.	./.	./.
chr2	89475831	rs149900655	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:21,42:29:63:0.667:2	0/1:14,18:29:32:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:74,22:29:96:0.229:2	./.
chr2	89475917	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,51:30:171:0.298:2	./.	./.	./.	./.	./.
chr2	89475935	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,56:30:186:0.301:2	./.	./.	./.	./.	./.
chr2	89475941	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,55:32:190:0.289:2	./.	./.	./.	./.	./.
chr2	89475991	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	0/1:167,4:32:171:0.023:2	./.
chr2	89475996	rs199530299	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:33:42:0.143:2	./.	0/1:172,4:32:176:0.023:2	./.
chr2	89476021	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,6:31:39:0.154:2	./.	0/1:183,4:32:187:0.021:2	./.
chr2	89476024	rs368646335	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,60:33:190:0.316:2	./.	./.	./.	./.	./.
chr2	89476102	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,25:32:109:0.229:2	./.	./.	./.	./.	./.
chr2	89476549	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,48:30:188:0.255:2	./.	./.	./.	./.	./.
chr2	89512959	rs144881289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,30:31:187:0.160:2	./.	./.	./.
chr2	89513004	rs141893646	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,60:30:81:0.741:2	0/1:19,35:30:54:0.648:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89513098	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,8:34:75:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89513365	rs181706250	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,32:31:49:0.653:2	0/1:12,47:29:59:0.797:2	./.	0/1:44,28:30:72:0.389:2	0/1:56,25:32:81:0.309:2
chr2	89521318	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,23:31:189:0.122:2	0/1:116,26:32:142:0.183:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89521389	rs200048221	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,49:32:187:0.262:2	0/1:104,27:32:131:0.206:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89521391	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,27:32:192:0.141:2	0/1:102,26:32:128:0.203:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89544366	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr2	89544473	rs147079411	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,60:32:197:0.305:2	0/1:129,65:32:194:0.335:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89567771	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:33:190:0.037:2	./.	./.	./.	./.
chr2	89567801	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:33:195:0.036:2
chr2	89567902	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,15:30:190:0.079:2	./.	./.	./.	./.
chr2	89568176	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,5:27:197:0.025:2	./.	./.	./.	./.	./.	./.
chr2	89597477	rs201801834	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,9:32:53:0.170:2	./.	./.	0/1:14,26:32:40:0.650:2	./.	./.
chr2	89619434	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:32:104:0.048:2	./.
chr2	89619586	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.
chr2	89619593	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89619639	rs200381091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,21:31:67:0.313:2	./.	./.	./.
chr2	89619676	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,7:31:72:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89619806	rs114472229	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,7:33:43:0.163:2	./.	./.	./.
chr2	89619816	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,3:34:63:0.049:2	0/1:42,3:32:45:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89629967	rs116531600	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,22:31:100:0.220:2	./.	./.	./.
chr2	89630002	rs116005199	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,18:33:85:0.212:2	0/1:29,21:33:50:0.420:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89630053	rs200873614	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,31:31:140:0.221:2	./.	./.	./.
chr2	89630056	rs201568279	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,31:31:141:0.220:2	./.	./.	./.
chr2	89630157	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,6:30:48:0.125:2	./.	./.	0/1:48,4:29:53:0.077:2	./.	./.
chr2	89630161	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,7:31:51:0.137:2	./.	./.	0/1:47,4:31:51:0.078:2	./.	./.
chr2	89630174	rs115094665	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:27:24:0.208:2	./.	./.	./.
chr2	89630177	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,6:33:44:0.136:2	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.
chr2	89952955	rs79547881	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,104:33:187:0.556:2	0/1:94,95:32:189:0.503:2	0/1:71,11:32:82:0.134:2	0/1:132,64:32:196:0.327:2	./.	./.	./.	0/1:137,59:33:196:0.301:2	./.	./.	./.
chr2	89953211	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,13:29:186:0.070:2	./.	./.	./.	./.
chr2	89953263	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.
chr2	89953342	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,7:33:180:0.039:2	./.	./.	./.	./.
chr2	89976280	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,22:30:181:0.122:2	0/1:155,38:31:193:0.197:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89986921	rs424406	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:135,56:31:191:0.293:2	0/1:78,31:32:109:0.284:2	./.	./.	0/1:189,5:31:194:0.026:2	./.	0/1:1,2:32:3:0.667:2	0/1:131,58:30:189:0.307:2	./.	./.	0/1:179,6:32:185:0.032:2
chr2	89999346	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,38:32:186:0.204:2	0/1:128,30:32:158:0.190:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89999348	rs200259649	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,44:33:185:0.238:2	0/1:126,32:32:158:0.203:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89999419	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,33:31:178:0.185:2	0/1:124,32:31:156:0.205:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90025275	rs147187346	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:136,56:33:192:0.292:2	0/1:113,58:33:171:0.339:2	./.	./.	./.	./.	./.	0/1:122,69:32:191:0.361:2	./.	./.	./.
chr2	90043702	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,19:31:190:0.100:2	./.	./.	./.	./.	./.
chr2	90044305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:33:183:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90060873	rs202041075	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.
chr2	90060963	rs150509294	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:170,20:30:190:0.105:2	0/1:146,10:31:156:0.064:2	./.	./.	./.	./.	0/1:3,30:30:33:0.909:2	./.	./.	./.	./.
chr2	90078093	rs2555982	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.
chr2	90121635	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.
chr2	90121645	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr2	90121675	rs7371197	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,65:30:65:1.00:2	0/1:1,68:30:69:0.986:2	0/1:0,64:29:64:1.00:2	./.	0/1:0,35:28:35:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,45:29:45:1.00:2	0/1:2,57:30:59:0.966:2
chr2	90121732	rs368378296	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:103,10:32:114:0.088:2	0/1:61,7:33:68:0.103:2	./.	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.	./.	./.	./.
chr2	90121845	rs2693227	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:158,19:32:178:0.107:2	0/1:109,38:31:147:0.259:2	./.	./.	./.	./.	0/1:0,37:32:37:1.00:2	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr2	90121849	rs1852250	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:159,21:33:181:0.117:2	0/1:110,41:32:151:0.272:2	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr2	90121926	rs1852249	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:157,32:31:189:0.169:2	0/1:126,58:31:184:0.315:2	./.	./.	./.	./.	0/1:1,65:30:66:0.985:2	0/1:177,7:32:184:0.038:2	./.	./.	./.
chr2	90121985	rs2693226	A	T,G	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/2:29:192:0.172:2	0/2:31:147:0.211:2	./.	./.	./.	./.	./.	./.	./.	0/1:33:167:0.024:2	./.
chr2	90139116	rs201820003	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,49:32:177:0.278:2	0/1:76,30:32:106:0.283:2	0/1:18,11:32:29:0.379:2	0/1:80,65:33:145:0.448:2	0/1:123,22:32:145:0.152:2	0/1:123,42:31:165:0.255:2	0/1:1,75:32:76:0.987:2	0/1:107,43:33:150:0.287:2	0/1:111,54:34:165:0.327:2	0/1:117,44:33:161:0.273:2	0/1:83,53:32:136:0.390:2
chr2	90139156	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,5:32:126:0.040:2	./.	./.	./.
chr2	90139287	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,8:28:158:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90139325	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:31:176:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90139373	rs6760987	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,90:32:186:0.484:2	./.	./.	./.
chr2	90153987	rs202180477	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,54:33:168:0.321:2	./.	./.
chr2	90154027	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,10:32:60:0.167:2	./.	./.	./.	./.
chr2	90154042	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,6:31:47:0.128:2	./.	./.	./.	./.
chr2	90154043	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,6:32:48:0.125:2	./.	./.	./.	./.
chr2	90154096	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,5:29:159:0.031:2	./.	./.	./.	./.	0/1:157,5:33:162:0.031:2	./.	./.	./.	./.	./.
chr2	90154131	rs146414056	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,102:30:182:0.564:2	./.	./.	./.
chr2	90154183	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.	./.	./.
chr2	90154211	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:188,5:33:193:0.026:2	./.	./.	./.	./.	0/1:70,3:37:73:0.041:2	./.	./.	./.	./.
chr2	90154255	rs201742575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,67:31:192:0.349:2	./.	./.
chr2	90193214	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,3:36:90:0.033:2	./.	./.	./.	./.
chr2	90193231	rs200574863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:188:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90193328	rs200673348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.
chr2	90193351	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,5:31:179:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr2	90193370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:187:0.022:2	./.	./.
chr2	90193376	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.
chr2	90193394	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	90193410	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:35:46:0.065:2	./.	./.	./.	./.
chr2	90193417	rs1724244	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	0/1:154,34:33:188:0.181:2	./.	./.	./.
chr2	90198703	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,10:30:137:0.073:2	./.	./.	./.
chr2	90198726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,15:29:187:0.080:2	./.	./.	./.
chr2	90198793	rs199857711	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.	./.	./.
chr2	90199094	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	./.	./.
chr2	90199191	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,18:31:195:0.092:2	./.	./.	./.
chr2	90211965	rs371745690	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	0/1:178,5:32:184:0.027:2	./.
chr2	90211969	rs183949314	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,88:32:179:0.494:2	0/1:75,59:31:134:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90211977	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:127:0.032:2	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.
chr2	90211978	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.
chr2	90212050	rs58164053	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:67,40:32:107:0.374:2	0/1:43,38:32:81:0.469:2	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.	0/1:61,36:32:97:0.371:2	0/1:60,41:32:101:0.406:2	./.	./.
chr2	90229260	rs842173	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,43:32:81:0.531:2	./.	./.	./.
chr2	90249122	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr2	90249185	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:182:0.022:2
chr2	90249290	rs199882416	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,9:32:138:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90249292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.
chr2	90249299	rs111542961	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,9:29:141:0.064:2	0/1:54,5:32:59:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90260191	rs842157	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,22:32:80:0.275:2	./.	./.	./.
chr2	90274073	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.	./.
chr2	90274142	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,9:30:21:0.429:2	0/1:122,38:31:160:0.238:2	./.	0/1:65,69:30:134:0.515:2	0/1:28,18:29:46:0.391:2	./.	./.	0/1:74,62:30:136:0.456:2	0/1:137,36:30:173:0.208:2
chr2	90274160	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:32:194:0.026:2	./.	./.	./.	./.	0/1:169,4:32:174:0.023:2	./.
chr2	90274185	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:30:187:0.027:2	./.
chr2	90274188	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,4:33:193:0.021:2	./.	./.	./.	./.	./.	./.
chr2	95537572	rs4854235	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.
chr2	95540701	rs62146943	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	./.	./.
chr2	95540717	rs62146944	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	./.	./.	./.	./.
chr2	95540728	rs62147442	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:31:39:0.077:2	./.	./.	./.	./.	./.
chr2	95542388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:29:28:0.143:2	./.
chr2	95542419	rs75603622	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.
chr2	95542476	rs1052809	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	./.	./.	./.	./.	0/1:47,5:30:52:0.096:2	./.	./.	0/1:13,4:30:17:0.235:2	./.
chr2	95691596	rs145146615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,77:30:155:0.497:2	./.	./.
chr2	95766599	rs115258802	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,15:30:32:0.469:2	0/1:10,5:32:15:0.333:2	./.	0/1:20,21:31:41:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr2	95773969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.
chr2	95773987	rs202186869	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,69:31:149:0.463:2	./.	./.	./.	./.	./.	./.
chr2	95775761	rs113259652	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,69:30:179:0.385:2	./.	./.	./.	0/1:87,96:32:183:0.525:2	./.	./.
chr2	95815878	rs151077080	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	./.	./.
chr2	95947085	rs12992066	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:1,38:31:39:0.974:2	0/1:1,60:30:61:0.984:2	0/1:0,69:31:69:1.00:2	0/1:34,24:31:58:0.414:2	0/1:32,38:30:70:0.543:2	0/1:1,59:32:60:0.983:2	0/1:0,62:30:62:1.00:2	0/1:17,18:30:35:0.514:2
chr2	95947099	rs72819488	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	0/1:18,23:33:41:0.561:2	0/1:35,26:32:61:0.426:2	./.	./.	0/1:20,16:32:36:0.444:2
chr2	95947672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,82:29:185:0.443:2	./.	./.	./.	./.	./.
chr2	95963242	rs2248415	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,11:27:11:1.00:2	0/1:10,4:23:14:0.286:2	0/1:9,5:32:14:0.357:2	0/1:0,4:25:4:1.00:2	0/1:0,5:31:5:1.00:2	./.
chr2	96071341	rs150496534	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.
chr2	96078225	rs1045346	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,5:30:177:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr2	96078235	rs1045349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr2	96261992	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:157:0.025:2	./.	./.	./.	./.
chr2	96262117	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:28:192:0.026:2	./.	./.	./.	./.
chr2	96263059	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,44:32:200:0.220:2	./.	./.	./.	./.	./.	./.
chr2	96263114	rs200056770	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,15:31:82:0.183:2	./.	./.	./.	0/1:157,39:32:196:0.199:2	0/1:154,36:32:190:0.189:2	./.	./.	./.
chr2	96264846	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.
chr2	96265165	rs200456827	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,66:31:142:0.465:2	0/1:92,73:31:165:0.442:2	0/1:31,4:30:35:0.114:2	0/1:93,59:29:152:0.388:2	0/1:101,63:29:164:0.384:2	0/1:84,60:30:144:0.417:2	0/1:86,65:30:151:0.430:2	0/1:92,65:30:157:0.414:2	0/1:92,58:31:150:0.387:2	0/1:90,77:31:167:0.461:2	0/1:121,68:31:189:0.360:2
chr2	96688929	rs201647131	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,40:32:138:0.290:2	0/1:70,48:32:118:0.407:2	0/1:11,8:28:19:0.421:2	0/1:113,80:32:193:0.415:2	0/1:98,85:32:183:0.464:2	0/1:105,84:32:189:0.444:2	0/1:90,97:31:187:0.519:2	0/1:120,72:33:192:0.375:2	0/1:113,69:33:183:0.379:2	0/1:119,28:32:147:0.190:2	0/1:88,55:32:143:0.385:2
chr2	96689061	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.	./.
chr2	96692489	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,7:31:49:0.143:2	0/1:29,7:33:36:0.194:2	./.
chr2	96692549	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2	0/1:29,5:33:34:0.147:2	./.	./.	./.	./.	./.
chr2	96697004	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,7:32:182:0.038:2	./.	./.
chr2	96697056	rs199841109	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,16:32:93:0.172:2	./.	./.	./.	0/1:162,38:33:200:0.190:2	0/1:146,48:33:194:0.247:2	./.	./.	./.
chr2	96697835	rs148782477	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,7:32:91:0.077:2	./.
chr2	96698036	rs142391216	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:27:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96698126	rs200882167	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:86,8:25:94:0.085:2	./.	0/1:95,41:26:137:0.301:2	0/1:0,36:26:36:1.00:2	./.	./.	0/1:88,31:25:120:0.261:2
chr2	96780716	rs2229169	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,31:29:31:1.00:2	0/1:7,3:30:10:0.300:2	0/1:0,56:30:56:1.00:2	0/1:42,36:29:78:0.462:2	0/1:0,74:29:74:1.00:2	0/1:44,35:31:79:0.443:2	0/1:32,34:28:66:0.515:2	0/1:1,38:31:39:0.974:2	0/1:0,62:31:62:1.00:2	./.
chr2	96781257	rs9333568	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,64:28:122:0.525:2	./.	./.	0/1:67,61:29:128:0.477:2	./.	./.
chr2	96781853	rs9333567	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,46:27:115:0.400:2	0/1:51,36:27:87:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96789718	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	./.
chr2	96789787	rs893173	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,14:30:39:0.359:2	0/1:15,7:32:22:0.318:2	./.	./.	0/1:19,26:32:45:0.578:2	./.	0/1:25,29:32:54:0.537:2	0/1:31,14:31:45:0.311:2	./.	./.	0/1:1,39:31:40:0.975:2
chr2	96789973	rs183967306	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,29:30:63:0.460:2	./.	./.	./.	./.	./.	0/1:16,20:32:36:0.556:2	./.
chr2	96795608	rs1657502	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,56:32:117:0.479:2	0/1:27,30:32:57:0.526:2	0/1:14,4:34:18:0.222:2	./.	0/1:81,87:32:168:0.518:2	./.	0/1:92,78:33:170:0.459:2	0/1:94,75:32:169:0.444:2	./.	./.	0/1:0,87:32:87:1.00:2
chr2	96795714	rs749459	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,40:31:76:0.526:2	0/1:24,24:31:48:0.500:2	./.	./.	0/1:23,40:30:63:0.635:2	./.	0/1:28,31:30:59:0.525:2	0/1:34,46:32:80:0.575:2	./.	0/1:35,41:31:76:0.539:2	0/1:25,27:31:52:0.519:2
chr2	96795857	rs749458	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:56,48:29:104:0.462:2	0/1:41,28:29:69:0.406:2	./.	./.	0/1:0,126:29:126:1.00:2	0/1:87,59:28:146:0.404:2	0/1:1,136:29:137:0.993:2	0/1:72,73:29:145:0.503:2	./.	0/1:62,74:29:136:0.544:2	0/1:0,133:29:133:1.00:2
chr2	96798305	rs41320144	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,50:31:102:0.490:2	0/1:25,37:31:62:0.597:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96798356	rs139152188	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:31:90:0.456:2	0/1:31,27:29:58:0.466:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96798440	rs61735195	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,32:31:59:0.542:2	./.
chr2	96804107	rs72825845	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,47:31:126:0.373:2	0/1:46,27:32:73:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96859034	rs997547	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,32:29:88:0.364:2	./.	./.	./.	./.	./.	./.
chr2	96919642	rs3852673	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,72:31:131:0.554:2	./.	./.	./.	./.	./.	./.
chr2	96944553	rs772175	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	0/1:122,77:31:199:0.387:2	./.	0/1:97,96:31:193:0.497:2	0/1:103,87:31:190:0.458:2	./.	./.	0/1:84,107:31:191:0.560:2
chr2	96949427	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,8:17:93:0.086:2
chr2	96950986	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.	./.	./.	./.
chr2	96952833	rs3171927	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,70:33:158:0.443:2	./.	./.	./.	./.	0/1:58,60:32:118:0.508:2	0/1:95,74:33:169:0.438:2
chr2	96992817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.
chr2	96993195	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,63:29:123:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr2	96993435	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,68:32:128:0.531:2	./.	./.	./.	./.	./.
chr2	96993757	rs2279105	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:33:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,26:32:71:0.366:2	0/1:42,42:30:84:0.500:2
chr2	96993884	rs1048675	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,25:27:65:0.385:2	0/1:43,43:30:86:0.500:2
chr2	97020049	rs3731935	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:30:50:0.360:2	0/1:26,23:27:49:0.469:2
chr2	97030247	rs2305935	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:32:95:0.463:2	0/1:62,65:33:128:0.512:2
chr2	97217910	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:35:0.441:2	./.	./.	./.	./.
chr2	97270100	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.
chr2	97271090	rs35715176	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,79:30:195:0.405:2	./.	./.	./.	./.	./.	./.	./.
chr2	97297114	rs35809433	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,100:30:192:0.521:2	./.	./.	./.	./.	./.	./.	./.
chr2	97297206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.
chr2	97327516	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:30:130:0.031:2
chr2	97350110	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,6:26:107:0.056:2	./.	./.	./.	./.	./.
chr2	97351840	rs7599598	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,18:31:64:0.281:2	0/1:0,78:29:78:1.00:2	./.	0/1:35,16:30:51:0.314:2	0/1:38,22:31:60:0.367:2	./.	./.	./.
chr2	97359364	rs61750875	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,18:29:44:0.409:2	0/1:43,28:30:71:0.394:2	./.	./.	./.	./.	./.	./.
chr2	97366088	rs61742095	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,22:32:39:0.564:2	0/1:30,32:33:62:0.516:2	./.	./.	./.	./.	./.	./.
chr2	97368407	rs377218922	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.
chr2	97493877	rs1320149	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,80:31:177:0.452:2	0/1:109,81:29:190:0.426:2	0/1:97,89:30:186:0.478:2	./.	./.	./.	./.	./.
chr2	97508164	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:35:19:0.211:2
chr2	97514090	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97519159	rs138273341	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:32:60:0.533:2	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97519206	rs201620346	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,94:31:197:0.477:2	./.	./.	./.	./.	./.	./.
chr2	97526799	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,32:31:58:0.552:2	./.	./.	./.	./.	./.	./.
chr2	97559759	rs11677797	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:47,48:30:95:0.505:2	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	0/1:25,25:30:50:0.500:2
chr2	97587363	rs377110345	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	0/1:70,62:33:132:0.470:2	./.	./.	./.	./.
chr2	97613616	rs1624844	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:28:93:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,93:27:93:1.00:2	0/1:38,50:27:88:0.568:2	0/1:0,117:27:117:1.00:2	0/1:0,71:27:71:1.00:2	0/1:0,109:28:109:1.00:2	0/1:0,96:28:96:1.00:2	0/1:0,69:28:70:1.00:2	0/1:1,108:26:109:0.991:2
chr2	97617140	rs1257019	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:31:126:0.992:2	0/1:1,84:31:85:0.988:2	0/1:0,14:30:14:1.00:2	0/1:0,141:31:141:1.00:2	0/1:106,67:30:173:0.387:2	0/1:1,165:29:166:0.994:2	0/1:4,176:30:182:0.978:2	0/1:1,174:30:175:0.994:2	0/1:0,165:31:165:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,101:31:101:1.00:2
chr2	97633266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2
chr2	97637905	rs6715329	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:1,37:31:38:0.974:2	0/1:0,8:31:8:1.00:2	0/1:0,77:32:77:1.00:2	0/1:35,43:33:78:0.551:2	0/1:0,85:32:85:1.00:2	0/1:1,50:32:51:0.980:2	0/1:2,89:32:91:0.978:2	0/1:0,58:33:58:1.00:2	0/1:2,67:32:69:0.971:2	0/1:0,50:32:50:1.00:2
chr2	97638038	rs1730120	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:28:56:1.00:2	0/1:0,39:27:39:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,99:28:99:1.00:2	0/1:81,37:27:118:0.314:2	0/1:0,77:28:77:1.00:2	0/1:2,95:26:97:0.979:2	0/1:0,95:27:95:1.00:2	0/1:0,76:27:76:1.00:2	0/1:0,55:27:55:1.00:2	0/1:0,69:27:69:1.00:2
chr2	97749730	rs113222096	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:30:67:0.463:2	./.	./.	./.
chr2	97757249	rs142838047	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:99,4:32:103:0.039:2	0/1:32,9:31:41:0.220:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97757290	rs201241480	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,39:31:120:0.325:2	0/1:52,28:31:80:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97757296	rs201521399	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,39:31:122:0.320:2	0/1:49,27:31:76:0.355:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97779611	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:33:115:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98123493	rs200556363	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,6:34:68:0.088:2	0/1:37,3:32:40:0.075:2	./.	0/1:48,4:33:52:0.077:2	0/1:45,6:33:51:0.118:2	0/1:46,6:30:52:0.115:2	0/1:26,3:33:29:0.103:2	0/1:70,5:33:75:0.067:2	0/1:55,4:28:59:0.068:2	0/1:34,6:34:40:0.150:2	0/1:48,4:33:52:0.077:2
chr2	98123513	rs201369506	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,4:32:63:0.063:2	0/1:32,6:31:38:0.158:2	./.	0/1:50,4:31:54:0.074:2	0/1:60,6:31:66:0.091:2	0/1:46,4:31:50:0.080:2	./.	0/1:75,5:31:80:0.063:2	0/1:63,7:31:70:0.100:2	0/1:40,6:30:46:0.130:2	0/1:63,4:32:67:0.060:2
chr2	98123514	rs199683914	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,4:32:63:0.063:2	0/1:32,6:32:38:0.158:2	./.	0/1:50,4:32:54:0.074:2	0/1:60,6:32:66:0.091:2	0/1:46,4:32:50:0.080:2	./.	0/1:75,5:32:80:0.063:2	0/1:63,7:33:70:0.100:2	0/1:42,5:28:47:0.106:2	0/1:65,4:33:69:0.058:2
chr2	98124059	rs201806630	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,9:27:35:0.257:2	0/1:19,3:32:22:0.136:2	./.	0/1:21,4:29:25:0.160:2	./.	./.	./.	./.	0/1:40,7:28:47:0.149:2	0/1:22,5:31:27:0.185:2	./.
chr2	98124087	rs200790071	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	0/1:29,3:33:32:0.094:2
chr2	98124465	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:189,5:33:194:0.026:2	0/1:186,6:32:192:0.031:2	0/1:93,7:31:100:0.070:2	0/1:189,10:31:199:0.050:2	./.	0/1:190,7:32:197:0.036:2	./.	./.	./.	0/1:186,5:31:191:0.026:2	0/1:185,9:31:194:0.046:2
chr2	98124466	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,5:31:192:0.026:2	0/1:190,6:31:196:0.031:2	0/1:95,5:31:100:0.050:2	0/1:191,8:31:199:0.040:2	./.	0/1:192,6:30:198:0.030:2	./.	./.	./.	./.	0/1:188,6:29:194:0.031:2
chr2	98124469	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,7:29:199:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr2	98127653	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,52:33:72:0.722:2	0/1:9,38:32:47:0.809:2	0/1:5,6:33:11:0.545:2	0/1:62,46:33:108:0.426:2	0/1:15,42:31:57:0.737:2	0/1:51,7:33:58:0.121:2	0/1:60,12:33:72:0.167:2	0/1:42,35:32:77:0.455:2	0/1:22,54:34:76:0.711:2	0/1:19,46:32:65:0.708:2	0/1:40,68:33:108:0.630:2
chr2	98127701	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,6:30:113:0.053:2	./.	./.	./.	./.
chr2	98127807	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:127,6:31:133:0.045:2	./.	./.	./.	0/1:125,10:32:135:0.074:2	0/1:164,12:31:176:0.068:2	0/1:121,7:30:128:0.055:2	0/1:163,8:31:171:0.047:2	0/1:172,9:33:181:0.050:2	0/1:134,9:32:143:0.063:2	./.
chr2	98128193	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,2:32:2:1.00:2
chr2	98128256	rs140876104	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,25:30:188:0.133:2	0/1:125,25:31:150:0.167:2	./.	0/1:183,12:31:195:0.062:2	0/1:177,18:30:195:0.092:2	0/1:184,8:29:192:0.042:2	0/1:192,6:31:198:0.030:2	0/1:189,9:31:198:0.045:2	0/1:186,5:31:191:0.026:2	0/1:165,24:31:189:0.127:2	0/1:176,20:31:196:0.102:2
chr2	98128258	rs148854709	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:165,25:32:190:0.132:2	0/1:135,24:32:159:0.151:2	./.	0/1:182,12:32:194:0.062:2	0/1:176,18:31:194:0.093:2	0/1:185,7:29:192:0.036:2	0/1:188,7:33:195:0.036:2	0/1:190,9:32:200:0.045:2	0/1:183,5:33:188:0.027:2	0/1:166,24:32:190:0.126:2	0/1:178,18:31:196:0.092:2
chr2	98128286	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:33:196:0.031:2	0/1:189,5:34:194:0.026:2	./.	./.	./.	./.
chr2	98128313	rs202131502	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,34:31:183:0.187:2	0/1:154,32:32:186:0.172:2	0/1:61,6:31:67:0.090:2	0/1:159,35:31:194:0.180:2	0/1:135,49:30:184:0.266:2	0/1:177,21:31:198:0.106:2	0/1:151,16:31:167:0.096:2	0/1:143,55:31:198:0.278:2	0/1:145,52:32:197:0.264:2	0/1:156,31:32:187:0.166:2	0/1:164,29:33:193:0.150:2
chr2	98128364	rs200630019	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,14:27:173:0.081:2	0/1:136,15:22:151:0.099:2	./.	0/1:120,8:27:128:0.063:2	0/1:135,23:28:158:0.146:2	./.	0/1:172,12:28:184:0.065:2	./.
chr2	98128402	rs200935570	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:31:173:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,7:32:165:0.042:2
chr2	98128421	rs200637231	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98129670	rs146414302	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,6:31:127:0.047:2	0/1:118,4:32:122:0.033:2	./.	0/1:132,5:29:137:0.036:2	0/1:139,12:30:151:0.079:2	./.	0/1:152,6:30:158:0.038:2	0/1:135,9:31:144:0.063:2	./.	0/1:111,5:29:116:0.043:2	./.
chr2	98129682	rs140574837	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,9:32:114:0.079:2	0/1:107,15:31:122:0.123:2	0/1:72,6:30:78:0.077:2	0/1:139,8:31:147:0.054:2	0/1:141,10:32:151:0.066:2	0/1:125,6:32:131:0.046:2	0/1:149,11:32:160:0.069:2	0/1:144,10:30:154:0.065:2	./.	0/1:104,12:31:116:0.103:2	./.
chr2	98129683	rs146417104	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:107,6:33:113:0.053:2	0/1:115,7:32:122:0.057:2	./.	./.	0/1:147,7:32:154:0.045:2	./.	0/1:153,7:29:160:0.044:2	./.	./.	./.	./.
chr2	98129744	rs141594775	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,82:33:164:0.500:2	0/1:80,69:33:149:0.463:2	0/1:61,20:33:81:0.247:2	0/1:94,83:32:177:0.469:2	0/1:82,62:32:144:0.431:2	0/1:78,93:32:171:0.544:2	0/1:87,67:32:154:0.435:2	0/1:85,90:32:175:0.514:2	0/1:79,93:33:172:0.541:2	0/1:57,100:32:157:0.637:2	0/1:100,76:32:176:0.432:2
chr2	98129817	rs199911436	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,81:34:190:0.426:2	0/1:88,94:33:182:0.516:2	0/1:31,37:33:68:0.544:2	0/1:87,103:34:190:0.542:2	0/1:92,83:33:175:0.474:2	0/1:115,79:33:194:0.407:2	0/1:118,51:33:169:0.302:2	0/1:91,100:33:191:0.524:2	0/1:63,127:34:190:0.668:2	0/1:105,87:33:193:0.453:2	0/1:142,53:33:195:0.272:2
chr2	98139864	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,10:30:47:0.213:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98152782	rs2922565	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.
chr2	98154616	rs183246566	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,7:30:197:0.036:2	./.	0/1:192,5:31:197:0.025:2	./.	0/1:186,8:31:194:0.041:2	0/1:174,4:32:178:0.022:2	0/1:84,8:31:92:0.087:2	0/1:74,5:26:79:0.063:2
chr2	98154623	rs187904341	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,47:32:55:0.855:2	0/1:2,26:31:28:0.929:2	./.	0/1:161,36:32:197:0.183:2	0/1:10,23:30:33:0.697:2	./.	0/1:153,35:31:188:0.186:2	0/1:160,34:31:194:0.175:2	./.	0/1:13,82:31:95:0.863:2	0/1:9,79:31:88:0.898:2
chr2	98156569	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr2	98158436	rs200052591	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr2	98160408	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:33:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2
chr2	98160442	rs200033395	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:1,18:32:19:0.947:2	0/1:0,10:31:10:1.00:2	0/1:13,5:32:18:0.278:2	0/1:4,13:32:17:0.765:2	0/1:6,16:32:22:0.727:2	0/1:4,10:34:14:0.714:2	0/1:0,15:32:15:1.00:2	0/1:0,20:32:20:1.00:2
chr2	98162183	rs202068566	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,6:30:30:0.200:2	./.	./.	./.	0/1:137,12:31:149:0.081:2	0/1:128,7:31:136:0.052:2	./.	0/1:1,2:32:3:0.667:2	0/1:4,26:31:30:0.867:2
chr2	98164184	rs13001728	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,187:32:193:0.979:2	0/1:2,123:32:125:0.984:2	0/1:24,20:31:44:0.455:2	0/1:95,92:32:187:0.492:2	0/1:3,157:32:160:0.981:2	./.	0/1:105,70:32:175:0.400:2	0/1:101,96:32:197:0.487:2	0/1:120,74:33:194:0.381:2	0/1:5,189:32:194:0.974:2	0/1:2,186:32:189:0.989:2
chr2	98169816	rs200751592	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.
chr2	98201858	rs2442304	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,21:31:181:0.116:2	0/1:143,24:32:167:0.144:2	0/1:34,5:31:39:0.128:2	0/1:170,28:31:198:0.141:2	./.	0/1:185,8:30:193:0.041:2	0/1:167,12:33:179:0.067:2	0/1:182,15:31:197:0.076:2	0/1:184,14:33:198:0.071:2	0/1:161,23:31:184:0.125:2	./.
chr2	98273661	rs2290124	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:19,34:32:53:0.642:2	0/1:0,53:32:53:1.00:2	./.	./.	0/1:58,42:32:100:0.420:2	0/1:42,36:33:78:0.462:2	0/1:0,48:33:48:1.00:2	0/1:0,64:32:64:1.00:2
chr2	98274527	rs1042705	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,23:33:23:1.00:2	./.	0/1:19,12:31:31:0.387:2	0/1:0,33:30:33:1.00:2	./.	./.	0/1:16,36:32:52:0.692:2	0/1:24,13:32:37:0.351:2	0/1:0,37:32:37:1.00:2	0/1:0,36:32:36:1.00:2
chr2	98275841	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.
chr2	98280312	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98354511	rs3192177	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,37:31:98:0.378:2	0/1:32,12:31:44:0.273:2	./.	./.	0/1:88,84:30:173:0.488:2	./.	./.	./.	./.	0/1:56,52:31:108:0.481:2	./.
chr2	98373583	rs184894242	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:31:59:0.356:2	./.	./.	./.	./.	./.
chr2	98376209	rs191573811	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:32:40:0.450:2	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98409046	rs12995673	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,30:31:54:0.556:2	0/1:14,8:32:22:0.364:2	./.	./.	0/1:15,16:31:31:0.516:2	./.	./.	./.	./.	0/1:7,23:33:30:0.767:2	./.
chr2	98430561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:31:107:0.047:2	./.	./.	./.
chr2	98431739	rs372623622	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.
chr2	98525107	rs1317178	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:33:113:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,14:33:14:1.00:2	0/1:54,54:32:108:0.500:2	0/1:0,76:32:76:1.00:2	0/1:70,73:32:143:0.510:2	./.	0/1:59,59:33:118:0.500:2	0/1:68,60:33:129:0.469:2	0/1:0,100:33:100:1.00:2	0/1:1,149:33:150:0.993:2
chr2	98611994	rs2279824	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,3:30:3:1.00:2
chr2	98709684	rs298917	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:82,61:29:143:0.427:2	0/1:37,54:28:91:0.593:2	./.	./.	./.	./.	0/1:111,66:29:177:0.373:2	./.	0/1:101,73:30:174:0.420:2	./.	./.
chr2	98736225	rs2305355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:32:54:0.537:2	./.	./.
chr2	98779439	rs62154921	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.	0/1:35,21:31:56:0.375:2	0/1:31,24:31:55:0.436:2	./.	./.	./.
chr2	98795792	rs4851884	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:94,6:33:100:0.060:2	0/1:8,8:32:16:0.500:2	0/1:3,161:32:165:0.982:2	./.	0/1:1,135:32:136:0.993:2	0/1:2,122:32:124:0.984:2	0/1:101,77:32:178:0.433:2	0/1:119,66:34:185:0.357:2	./.	0/1:0,137:32:137:1.00:2
chr2	98809432	rs74735968	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,47:32:113:0.416:2	./.
chr2	98844674	rs7601049	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,7:32:28:0.250:2	0/1:8,5:32:13:0.385:2	0/1:0,3:32:3:1.00:2	0/1:0,25:32:25:1.00:2	0/1:22,3:32:25:0.120:2	0/1:0,25:32:25:1.00:2	0/1:0,12:32:12:1.00:2	0/1:17,10:33:27:0.370:2	0/1:17,10:33:27:0.370:2	0/1:8,9:34:17:0.529:2	0/1:0,27:33:27:1.00:2
chr2	98851162	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.
chr2	98853173	rs11889349	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:32:6:0.500:2	0/1:22,25:31:47:0.532:2	./.	0/1:0,50:31:50:1.00:2	0/1:0,65:31:65:1.00:2	./.	0/1:23,25:32:48:0.521:2	0/1:19,28:32:47:0.596:2	0/1:0,43:32:43:1.00:2
chr2	98928429	rs17428626	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,13:33:26:0.500:2	0/1:10,7:30:18:0.412:2	0/1:3,4:32:7:0.571:2	0/1:20,15:31:35:0.429:2	./.	./.	./.	0/1:10,13:31:23:0.565:2	./.	./.	./.
chr2	98928494	rs7587534	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,24:31:25:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,14:31:14:1.00:2
chr2	98948224	rs13427344	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,75:31:77:0.974:2	0/1:1,48:32:49:0.980:2	./.	0/1:47,28:32:75:0.373:2	0/1:1,64:31:65:0.985:2	./.	./.	0/1:0,86:31:86:1.00:2	0/1:23,40:31:63:0.635:2	0/1:31,21:31:52:0.404:2	./.
chr2	98986510	rs6727412	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,22:32:43:0.512:2	0/1:20,15:31:35:0.429:2	./.	./.	0/1:29,9:30:38:0.237:2	./.	./.	0/1:18,33:31:51:0.647:2	0/1:26,20:33:46:0.435:2	./.	./.
chr2	98994615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	99012580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	99012976	rs190014426	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,47:32:127:0.370:2	./.	./.	./.	./.	./.	./.
chr2	99149946	rs2278211	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,15:33:36:0.417:2	0/1:10,16:32:26:0.615:2	0/1:5,3:31:8:0.375:2	0/1:0,69:32:69:1.00:2	0/1:48,36:32:84:0.429:2	0/1:0,50:32:50:1.00:2	./.	0/1:46,28:33:74:0.378:2	./.	./.	./.
chr2	99160361	rs2230387	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,17:30:74:0.230:2	./.	./.	./.	./.	./.	./.	./.
chr2	99162439	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:34:78:0.051:2	./.
chr2	99172243	rs41486345	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,34:30:84:0.405:2	./.	./.	./.	./.	./.	./.
chr2	99172244	rs2278206	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,15:28:33:0.455:2	0/1:16,12:30:29:0.429:2	./.	0/1:0,69:31:69:1.00:2	0/1:36,46:30:82:0.561:2	0/1:1,74:31:75:0.987:2	./.	0/1:48,34:30:82:0.415:2	0/1:37,29:30:67:0.439:2	./.	./.
chr2	99193496	rs2230388	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,63:31:129:0.488:2	0/1:43,34:31:77:0.442:2	0/1:9,24:31:33:0.727:2	0/1:0,175:30:175:1.00:2	0/1:107,75:30:182:0.412:2	0/1:1,178:30:179:0.994:2	./.	0/1:98,69:31:168:0.413:2	0/1:96,85:31:182:0.470:2	./.	./.
chr2	99226173	rs1062847	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,34:32:76:0.447:2	0/1:23,22:32:45:0.489:2	0/1:2,3:31:5:0.600:2	0/1:0,78:33:79:1.00:2	0/1:25,24:31:49:0.490:2	0/1:2,73:32:75:0.973:2	./.	0/1:65,27:33:92:0.293:2	0/1:52,35:33:87:0.402:2	./.	./.
chr2	99227239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.
chr2	99232781	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.	./.
chr2	99271976	rs61748145	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,30:32:71:0.423:2	0/1:25,24:32:49:0.490:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	99274653	rs2271670	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,40:31:93:0.430:2	0/1:23,24:31:47:0.511:2	./.	./.	0/1:44,27:31:71:0.380:2	0/1:59,41:31:100:0.410:2	0/1:44,33:31:77:0.429:2	0/1:66,50:31:116:0.431:2
chr2	99279580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:33:169:0.024:2	./.	./.
chr2	99412674	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:29:53:0.075:2	./.
chr2	99439603	rs149622421	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.
chr2	99767073	rs139891421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,30:32:71:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr2	99778444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.
chr2	99778985	rs2632277	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,6:33:6:1.00:2	0/1:67,54:32:121:0.446:2	0/1:51,28:32:79:0.354:2	./.	0/1:44,40:33:84:0.476:2	0/1:62,56:33:118:0.475:2	./.	0/1:0,54:33:54:1.00:2	0/1:2,101:33:103:0.981:2
chr2	99779131	rs2516835	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,3:32:3:1.00:2	0/1:19,15:31:34:0.441:2	0/1:18,10:30:28:0.357:2	./.	0/1:9,14:32:23:0.609:2	0/1:10,13:32:23:0.565:2	./.	0/1:0,23:33:23:1.00:2	0/1:0,53:31:53:1.00:2
chr2	99804642	rs10865030	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,89:30:89:1.00:2	0/1:52,27:31:79:0.342:2	0/1:0,108:30:109:1.00:2	0/1:0,121:31:121:1.00:2	0/1:0,82:29:82:1.00:2	0/1:1,148:30:149:0.993:2
chr2	99804657	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.
chr2	99804707	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:28:165:0.030:2	./.	./.
chr2	99811314	rs142661815	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,46:29:87:0.529:2	./.	./.	./.	./.	./.
chr2	99812070	rs1044575	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,104:32:105:0.990:2	0/1:0,78:32:78:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,119:31:119:1.00:2	0/1:81,67:31:148:0.453:2	./.	0/1:69,76:31:145:0.524:2	0/1:81,78:32:159:0.491:2	./.	0/1:0,103:31:103:1.00:2	0/1:1,117:32:118:0.992:2
chr2	99812108	rs7572157	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,48:29:164:0.293:2	./.	./.	./.	./.	./.	./.	./.
chr2	99976813	rs41280587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:30:30:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr2	99978048	rs12233086	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,33:32:86:0.384:2	0/1:31,16:32:47:0.340:2	./.	0/1:38,52:31:90:0.578:2	./.	./.	./.	./.	./.	0/1:57,31:32:88:0.352:2	0/1:0,115:31:115:1.00:2
chr2	99980124	rs74430561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,75:31:154:0.487:2	./.	./.
chr2	99980811	rs117138860	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,20:28:45:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr2	99992822	rs7558074	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:32:14:0.429:2	0/1:4,3:31:7:0.429:2	./.	0/1:0,17:31:17:1.00:2	0/1:10,9:32:19:0.474:2	0/1:0,16:31:16:1.00:2	0/1:10,6:31:16:0.375:2	0/1:5,3:31:8:0.375:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,15:33:15:1.00:2
chr2	99995517	rs11896520	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,15:30:31:0.484:2	0/1:1,51:32:52:0.981:2	./.	0/1:21,19:32:40:0.475:2	0/1:0,59:33:59:1.00:2	./.	./.
chr2	99995804	rs1376443	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,53:30:114:0.469:2	0/1:32,34:30:66:0.515:2	0/1:8,16:30:24:0.667:2	0/1:1,158:30:159:0.994:2	0/1:2,153:29:155:0.987:2	0/1:0,179:29:179:1.00:2	0/1:94,84:29:178:0.472:2	0/1:121,75:30:196:0.383:2	0/1:2,153:31:155:0.987:2	0/1:62,64:30:126:0.508:2	0/1:0,130:30:130:1.00:2
chr2	100010810	rs3197957	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,33:30:70:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr2	100017805	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	./.
chr2	100019215	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2
chr2	100019496	rs2305354	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,19:31:45:0.422:2	0/1:18,12:30:30:0.400:2	0/1:4,4:30:8:0.500:2	0/1:0,37:30:37:1.00:2	0/1:23,6:30:29:0.207:2	0/1:2,24:29:26:0.923:2	0/1:25,7:31:32:0.219:2	0/1:21,12:29:33:0.364:2	0/1:0,34:30:34:1.00:2	0/1:31,21:30:52:0.404:2	0/1:0,66:30:66:1.00:2
chr2	100024548	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,27:33:67:0.403:2	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	100055158	rs3087399	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:32:63:0.524:2	./.	./.	./.	./.
chr2	100055506	rs3087386	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,36:33:58:0.621:2	0/1:19,20:32:39:0.513:2	0/1:6,4:33:10:0.400:2	0/1:1,88:33:89:0.989:2	0/1:41,40:32:81:0.494:2	0/1:0,79:32:79:1.00:2	0/1:37,47:33:84:0.560:2	0/1:47,54:33:101:0.535:2	0/1:0,84:34:84:1.00:2	0/1:24,17:32:41:0.415:2	0/1:1,68:33:69:0.986:2
chr2	100058870	rs3087403	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,44:30:117:0.376:2	0/1:1,140:29:141:0.993:2	./.	0/1:81,78:30:159:0.491:2	0/1:3,121:31:124:0.976:2	./.	./.
chr2	100175340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2
chr2	100175346	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,6:33:151:0.040:2
chr2	100210074	rs1047281	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,11:27:35:0.314:2	./.	0/1:26,29:29:55:0.527:2	0/1:13,22:30:35:0.629:2	0/1:13,20:30:33:0.606:2	./.
chr2	100210642	rs1047265	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,76:32:185:0.411:2	./.	0/1:100,75:32:175:0.429:2	0/1:110,85:33:195:0.436:2	0/1:86,77:32:163:0.472:2	./.
chr2	100218080	rs4851214	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:4,5:32:9:0.556:2	./.	0/1:0,2:35:2:1.00:2
chr2	100343557	rs4851223	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,27:32:27:1.00:2
chr2	100623773	rs141695864	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,56:31:133:0.421:2	0/1:56,29:32:85:0.341:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	100722358	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2
chr2	100903453	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	100915330	rs116702638	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,81:31:189:0.429:2	./.	./.	./.	./.	./.
chr2	100915772	rs4851287	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,29:33:63:0.460:2	0/1:27,17:32:44:0.386:2	0/1:0,4:33:4:1.00:2	0/1:47,44:32:91:0.484:2	0/1:0,52:32:52:1.00:2	0/1:29,33:32:62:0.532:2	0/1:0,34:33:34:1.00:2	0/1:83,4:32:87:0.046:2	0/1:0,74:34:74:1.00:2	./.	0/1:1,78:33:79:0.987:2
chr2	100916306	rs2033748	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,21:31:48:0.438:2	0/1:19,18:30:37:0.486:2	0/1:0,9:31:9:1.00:2	0/1:13,18:32:31:0.581:2	0/1:0,19:30:19:1.00:2	0/1:19,21:30:40:0.525:2	0/1:0,47:30:47:1.00:2	./.	0/1:0,44:31:44:1.00:2	./.	0/1:0,60:30:60:1.00:2
chr2	100916315	rs11123823	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,22:33:46:0.478:2	0/1:18,16:32:34:0.471:2	0/1:3,5:33:8:0.625:2	0/1:12,15:31:27:0.556:2	./.	./.	0/1:0,42:32:42:1.00:2	./.	0/1:0,42:33:42:1.00:2	./.	0/1:0,57:32:58:1.00:2
chr2	100917109	rs13006224	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,19:33:37:0.514:2	0/1:28,7:33:35:0.200:2	0/1:4,4:31:8:0.500:2	0/1:40,31:33:71:0.437:2	./.	./.	0/1:0,60:32:60:1.00:2	./.	0/1:0,73:33:73:1.00:2	./.	0/1:1,59:32:60:0.983:2
chr2	101010082	rs3748930	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,39:28:64:0.609:2	0/1:18,19:28:37:0.514:2	0/1:3,4:28:7:0.571:2	0/1:27,32:28:59:0.542:2	0/1:51,4:30:55:0.073:2	./.	0/1:1,42:27:43:0.977:2	./.	0/1:0,79:28:79:1.00:2	./.	0/1:0,77:26:77:1.00:2
chr2	101031561	rs3828193	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,20:31:46:0.435:2	0/1:21,5:32:26:0.192:2	0/1:4,3:30:7:0.429:2	0/1:39,30:30:69:0.435:2	./.	./.	0/1:0,49:29:49:1.00:2	./.	0/1:0,85:31:85:1.00:2	./.	0/1:0,51:31:51:1.00:2
chr2	101086966	rs13411940	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,31:32:65:0.477:2	0/1:18,16:32:34:0.471:2	./.	0/1:39,28:31:67:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr2	101096960	rs1519654	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,53:30:93:0.570:2	0/1:24,34:31:58:0.586:2	0/1:5,4:32:9:0.444:2	0/1:70,74:31:144:0.514:2	0/1:69,51:30:120:0.425:2	./.	./.	0/1:67,64:30:131:0.489:2	0/1:64,73:32:137:0.533:2	./.	0/1:0,115:31:115:1.00:2
chr2	101186088	rs1052117	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,58:32:58:1.00:2	0/1:6,7:30:13:0.538:2	0/1:59,42:31:101:0.416:2	0/1:41,14:31:55:0.255:2	0/1:102,13:32:115:0.113:2	./.	./.	0/1:66,51:32:117:0.436:2	0/1:119,14:33:133:0.105:2	0/1:0,121:32:121:1.00:2
chr2	101188227	rs143476375	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	101192883	rs4618078	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,20:30:57:0.351:2	./.	./.	./.	0/1:46,11:32:57:0.193:2	./.
chr2	101437561	rs6542989	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,76:31:177:0.429:2	0/1:88,54:31:142:0.380:2	./.
chr2	101437601	rs6542990	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,66:33:142:0.465:2	0/1:49,41:32:90:0.456:2	./.
chr2	101541637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.
chr2	101580575	rs41280595	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:29:80:0.413:2	./.	./.	./.	./.	./.
chr2	101582190	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	101587455	rs1562313	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,50:32:121:0.413:2	0/1:56,28:32:84:0.333:2	0/1:50,24:32:74:0.324:2	0/1:46,35:30:81:0.432:2
chr2	101591304	rs2305160	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,28:29:50:0.560:2	0/1:6,20:30:26:0.769:2	0/1:0,8:29:8:1.00:2	./.	0/1:43,41:29:86:0.488:2	0/1:40,35:29:75:0.467:2	0/1:34,49:30:83:0.590:2	0/1:61,47:29:109:0.435:2	0/1:0,54:29:54:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,51:29:51:1.00:2
chr2	101594191	rs11541353	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	./.	./.	./.
chr2	101606909	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.
chr2	101609827	rs9223	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:32:11:1.00:2	./.	0/1:63,47:32:110:0.427:2	0/1:93,55:31:148:0.372:2	0/1:71,45:32:116:0.388:2	./.	./.	0/1:0,113:33:113:1.00:2	0/1:77,50:32:127:0.394:2
chr2	101619171	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,93:32:187:0.497:2	./.	./.	./.	./.	./.
chr2	101619226	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.
chr2	101624471	rs746924	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,31:31:67:0.463:2	0/1:31,27:32:58:0.466:2	0/1:0,3:32:3:1.00:2	0/1:43,31:29:74:0.419:2	0/1:0,49:30:49:1.00:2	0/1:1,67:31:68:0.985:2	0/1:2,47:31:49:0.959:2	0/1:36,44:31:80:0.550:2	0/1:52,23:33:75:0.307:2	0/1:0,51:33:51:1.00:2	0/1:57,51:30:108:0.472:2
chr2	101627925	rs1062062	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:33:34:0.441:2	0/1:13,11:33:24:0.458:2	./.	./.	./.	0/1:32,16:31:48:0.333:2	./.	./.	./.	./.	./.
chr2	101635443	rs371612020	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2	./.
chr2	101638828	rs34685616	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,40:32:80:0.500:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	0/1:59,61:32:120:0.508:2	./.	./.	./.	./.	./.
chr2	101638888	rs3739014	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,27:30:54:0.500:2	0/1:9,13:30:22:0.591:2	0/1:0,5:28:5:1.00:2	0/1:43,26:30:69:0.377:2	0/1:1,52:30:53:0.981:2	0/1:0,62:29:62:1.00:2	0/1:3,53:30:56:0.946:2	0/1:56,35:29:91:0.385:2	0/1:25,24:30:49:0.490:2	0/1:0,46:30:46:1.00:2	0/1:32,28:30:60:0.467:2
chr2	101644855	rs11683877	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:5,12:33:17:0.706:2	0/1:14,22:32:36:0.611:2	0/1:11,8:32:19:0.421:2	./.	./.	0/1:0,38:32:38:1.00:2	0/1:21,14:33:35:0.400:2
chr2	101646144	rs3739015	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,81:32:176:0.460:2	0/1:87,75:31:162:0.463:2	./.	0/1:96,64:32:160:0.400:2	0/1:88,76:32:164:0.463:2	0/1:74,80:33:154:0.519:2	./.	./.
chr2	101656726	rs2289953	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,19:30:46:0.413:2	0/1:21,23:29:44:0.523:2	0/1:0,6:31:6:1.00:2	0/1:47,31:28:78:0.397:2	0/1:1,95:29:96:0.990:2	0/1:0,80:29:80:1.00:2	0/1:0,97:29:97:1.00:2	0/1:50,45:29:95:0.474:2	0/1:38,34:30:72:0.472:2	0/1:1,50:29:51:0.980:2	0/1:36,20:28:56:0.357:2
chr2	101869588	rs2272320	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.
chr2	101898412	rs13151	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,115:33:116:1.00:2	0/1:0,110:33:110:1.00:2	0/1:60,56:34:116:0.483:2	0/1:0,93:33:93:1.00:2	0/1:0,95:33:95:1.00:2
chr2	102018908	rs2175968	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,35:28:55:0.636:2	0/1:10,20:27:30:0.667:2	0/1:0,9:30:9:1.00:2	0/1:0,71:28:71:1.00:2	0/1:30,38:27:68:0.559:2	0/1:32,26:27:58:0.448:2	0/1:1,96:28:97:0.990:2	0/1:44,46:29:90:0.511:2	0/1:0,48:29:48:1.00:2	./.	0/1:33,40:29:73:0.548:2
chr2	102038849	rs4851436	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,124:33:124:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,96:32:96:1.00:2	0/1:1,126:33:127:0.992:2	0/1:0,127:34:127:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,140:33:140:1.00:2
chr2	102314618	rs142097566	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.
chr2	102472459	rs1139583	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	0/1:20,17:32:37:0.459:2	./.	0/1:22,24:33:46:0.522:2	0/1:30,41:31:71:0.577:2	./.	./.	./.
chr2	102476215	rs186857052	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,57:30:96:0.600:2	./.
chr2	102486114	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.
chr2	102781649	rs2228139	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,60:30:62:0.984:2	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	102781651	rs76949245	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,48:29:162:0.296:2	./.	0/1:19,11:27:30:0.367:2	0/1:134,44:25:178:0.247:2	0/1:116,50:25:167:0.301:2	0/1:128,48:25:176:0.273:2	0/1:122,56:24:178:0.315:2	0/1:127,49:26:176:0.278:2	0/1:133,40:23:173:0.231:2	0/1:116,60:27:176:0.341:2	0/1:128,41:27:169:0.243:2
chr2	102792875	rs3917320	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:30:73:0.562:2	./.	./.	./.
chr2	102842467	rs2302620	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2
chr2	102851693	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	102851708	rs2302612	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,66:28:142:0.465:2	./.	./.	./.
chr2	102955468	rs1041973	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,34:30:79:0.430:2	./.	0/1:30,36:30:66:0.545:2	./.	./.	0/1:68,37:31:105:0.352:2	0/1:73,49:32:122:0.402:2
chr2	102957716	rs1420101	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:31:11:1.00:2	0/1:52,40:31:92:0.435:2	0/1:25,30:31:55:0.545:2	./.	0/1:59,20:31:79:0.253:2	0/1:75,37:30:112:0.330:2	./.	./.	./.
chr2	102968007	rs4988956	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,93:31:93:1.00:2	0/1:1,58:31:59:0.983:2	./.	0/1:41,75:29:116:0.647:2	0/1:69,37:29:106:0.349:2	0/1:57,55:30:112:0.491:2	0/1:58,33:31:91:0.363:2	0/1:64,42:30:107:0.396:2	./.	0/1:0,93:31:93:1.00:2	0/1:82,37:32:119:0.311:2
chr2	102968075	rs4988957	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,69:32:69:1.00:2	./.	0/1:79,91:32:170:0.535:2	0/1:97,78:32:175:0.446:2	0/1:95,99:32:194:0.510:2	0/1:104,92:32:196:0.469:2	0/1:104,87:33:191:0.455:2	./.	0/1:0,134:33:134:1.00:2	0/1:85,66:32:151:0.437:2
chr2	102968211	rs10192036	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:0,65:32:65:1.00:2	./.	0/1:56,51:31:107:0.477:2	0/1:43,30:32:73:0.411:2	0/1:39,47:32:86:0.547:2	0/1:55,34:32:89:0.382:2	0/1:70,41:32:111:0.369:2	./.	0/1:1,74:32:75:0.987:2	0/1:53,31:33:84:0.369:2
chr2	102968212	rs10204137	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:0,65:31:65:1.00:2	./.	0/1:56,51:32:107:0.477:2	0/1:43,30:32:73:0.411:2	0/1:39,47:32:86:0.547:2	0/1:56,34:32:90:0.378:2	0/1:70,41:32:111:0.369:2	./.	0/1:0,75:31:75:1.00:2	0/1:53,31:32:84:0.369:2
chr2	102968285	rs4988958	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,59:32:61:0.967:2	0/1:0,28:33:28:1.00:2	./.	0/1:37,22:32:59:0.373:2	0/1:25,19:32:44:0.432:2	0/1:31,20:32:51:0.392:2	0/1:29,23:32:52:0.442:2	0/1:46,32:32:78:0.410:2	./.	0/1:0,44:33:44:1.00:2	0/1:41,33:32:74:0.446:2
chr2	102968356	rs10192157	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,22:32:23:0.957:2	0/1:0,16:31:16:1.00:2	./.	0/1:12,3:33:15:0.200:2	0/1:19,10:31:29:0.345:2	0/1:17,12:31:29:0.414:2	0/1:5,7:31:12:0.583:2	0/1:17,14:29:31:0.452:2	./.	0/1:0,22:32:22:1.00:2	0/1:14,15:32:29:0.517:2
chr2	102968362	rs10206753	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:28:18:1.00:2	0/1:0,13:27:13:1.00:2	./.	./.	0/1:18,10:28:28:0.357:2	0/1:14,10:29:24:0.417:2	0/1:5,4:30:9:0.444:2	0/1:16,11:29:27:0.407:2	./.	0/1:0,20:29:20:1.00:2	0/1:13,11:30:24:0.458:2
chr2	102979123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2
chr2	102979144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:55:0.074:2	./.	./.	./.	./.	./.
chr2	103001402	rs1035130	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,58:31:58:1.00:2	./.	./.	0/1:22,20:31:42:0.476:2	0/1:50,37:32:87:0.425:2	./.	./.	./.
chr2	103063585	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr2	103095404	rs11692304	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,47:26:52:0.979:2	0/1:0,28:30:31:1.00:2	./.	0/1:0,51:28:53:1.00:2	0/1:37,22:27:59:0.373:2	0/1:34,24:28:59:0.414:2	0/1:30,30:27:60:0.500:2	0/1:0,62:29:63:1.00:2	./.	0/1:1,56:28:58:0.982:2	0/1:21,28:29:51:0.571:2
chr2	103095643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:33:132:0.030:2	./.	./.	./.	./.	./.	./.
chr2	103149100	rs1014286	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,27:33:27:1.00:2	0/1:22,17:32:39:0.436:2	0/1:17,21:32:38:0.553:2	0/1:0,28:32:28:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:1,29:32:30:0.967:2	0/1:21,21:33:42:0.500:2
chr2	103334969	rs1052431	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,36:30:60:0.600:2	./.	./.	0/1:20,39:30:59:0.661:2	0/1:25,33:30:58:0.569:2	0/1:22,28:31:50:0.560:2
chr2	103335441	rs33993717	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.
chr2	103335512	rs33988363	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:30:73:0.438:2	./.	./.	./.	./.	./.
chr2	103335646	rs115622745	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,62:29:133:0.466:2	./.	./.	./.	./.	./.
chr2	103431404	rs887987	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,42:27:42:1.00:2
chr2	105472013	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	105654588	rs13399067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	105665808	rs11538197	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,19:33:33:0.576:2	0/1:15,8:33:23:0.348:2	./.	./.	./.	0/1:23,28:31:51:0.549:2	./.	./.	0/1:32,21:32:53:0.396:2	0/1:35,20:32:55:0.364:2	./.
chr2	105705507	rs11538198	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:31:21:0.429:2	0/1:6,13:32:19:0.684:2	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	./.	0/1:12,12:32:24:0.500:2	0/1:10,8:31:18:0.444:2	./.
chr2	105707766	rs12620254	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,26:31:59:0.441:2	0/1:27,25:32:52:0.481:2	./.	./.	./.	0/1:35,28:31:63:0.444:2	./.	./.	0/1:45,28:32:73:0.384:2	0/1:37,38:31:75:0.507:2	./.
chr2	105709023	rs6543282	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,20:28:46:0.435:2	0/1:8,5:26:13:0.385:2	0/1:0,2:27:2:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,37:28:37:1.00:2
chr2	105713697	rs15567	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,22:30:63:0.355:2	0/1:25,16:30:41:0.390:2	./.	./.	./.	0/1:51,37:28:88:0.420:2	./.	./.	0/1:52,36:30:89:0.409:2	0/1:41,34:27:75:0.453:2	./.
chr2	105859151	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,44:33:84:0.524:2	./.	./.
chr2	105859249	rs35946826	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,54:30:109:0.495:2	./.	./.	./.	0/1:56,36:31:92:0.391:2	0/1:61,37:31:98:0.378:2	./.
chr2	105859871	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:29:139:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr2	105885961	rs2241797	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,36:28:84:0.429:2	0/1:31,26:27:57:0.456:2	0/1:7,6:29:13:0.462:2	0/1:65,30:28:95:0.316:2	0/1:38,20:29:58:0.345:2	0/1:50,24:28:74:0.324:2	0/1:26,6:28:32:0.188:2	0/1:52,17:28:69:0.246:2	0/1:52,18:30:70:0.257:2	0/1:34,15:27:49:0.306:2	0/1:14,12:27:26:0.462:2
chr2	105889349	rs11676273	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,33:30:60:0.550:2	./.	./.	./.	./.	0/1:26,20:31:46:0.435:2
chr2	105897003	rs2241799	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:74,65:32:140:0.468:2	0/1:45,57:32:102:0.559:2	0/1:17,7:32:24:0.292:2	./.	0/1:108,77:31:185:0.416:2	./.	./.	./.	0/1:102,83:32:185:0.449:2	./.	./.
chr2	105915128	rs12476720	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	0/1:0,38:30:38:1.00:2	./.	./.	./.	./.	0/1:24,19:31:43:0.442:2
chr2	105924259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:113:0.036:2	./.	./.	./.
chr2	105924510	rs2241801	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,31:27:65:0.477:2	0/1:19,29:28:48:0.604:2	0/1:0,8:29:8:1.00:2	./.	0/1:45,31:27:76:0.408:2	0/1:0,59:27:59:1.00:2	./.	0/1:41,28:28:69:0.406:2	0/1:29,30:28:59:0.508:2	0/1:24,24:28:48:0.500:2	0/1:27,19:26:46:0.413:2
chr2	105954140	rs55772482	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:30:34:0.559:2	0/1:16,12:33:28:0.429:2	0/1:9,13:31:22:0.591:2	./.
chr2	105977761	rs11124029	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,44:33:89:0.494:2
chr2	105977776	rs3087523	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,56:32:107:0.523:2	./.
chr2	105979752	rs137869171	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,91:31:185:0.492:2
chr2	105979777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:144:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	105984056	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr2	106013147	rs34179780	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,26:32:46:0.565:2	0/1:15,14:32:29:0.483:2	./.	./.	0/1:29,27:30:56:0.482:2	./.	./.	./.	0/1:53,22:32:75:0.293:2	0/1:41,27:31:68:0.397:2	./.
chr2	106015412	rs76810592	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.
chr2	106498425	rs199651832	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chr2	106682226	rs4271786	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr2	106682235	rs4266035	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.
chr2	106690493	rs41280609	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,28:32:84:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr2	106742139	rs4851925	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,49:31:49:1.00:2
chr2	107021651	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,5:32:166:0.030:2	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.
chr2	107021677	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:34:126:0.032:2	./.	./.	./.
chr2	107029575	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,11:32:199:0.055:2	./.	./.	./.
chr2	107032331	rs199544143	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.
chr2	107032343	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.
chr2	107032417	rs9653483	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:98,68:32:166:0.410:2	0/1:88,63:31:152:0.417:2	./.	./.	0/1:82,75:32:157:0.478:2	./.	./.	0/1:80,60:32:140:0.429:2	./.	0/1:2,142:33:145:0.986:2	0/1:84,79:33:163:0.485:2
chr2	107039689	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2
chr2	107039712	rs199800837	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	0/1:168,30:31:198:0.152:2	0/1:155,28:32:183:0.153:2	./.	0/1:173,27:34:200:0.135:2	./.	0/1:184,13:33:198:0.066:2
chr2	107039817	rs201174004	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:144,30:32:174:0.172:2	0/1:93,23:32:116:0.198:2	./.	./.	0/1:76,16:31:92:0.174:2	./.	./.	0/1:87,16:31:103:0.155:2	./.	./.	./.
chr2	107039924	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,6:30:71:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	107040372	rs200719868	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:33:183:0.033:2	./.	./.	./.
chr2	107040564	rs55993306	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,39:31:70:0.557:2	0/1:136,61:31:197:0.310:2	./.	0/1:117,81:31:198:0.409:2	./.	./.	./.	./.	./.
chr2	107040572	rs200203656	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:168,20:30:189:0.106:2	0/1:168,26:27:196:0.134:2	./.	./.	0/1:190,10:30:200:0.050:2	./.	./.	0/1:190,9:31:199:0.045:2	./.	0/1:9,95:31:104:0.913:2	0/1:172,23:29:197:0.118:2
chr2	107040614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	107040963	rs193124838	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.	./.	./.	./.
chr2	107040985	rs140856347	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr2	107041057	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.	./.	./.	./.	./.
chr2	107041289	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:30:61:0.098:2	0/1:52,5:31:57:0.088:2	./.	0/1:52,8:31:60:0.133:2	./.	0/1:76,8:31:84:0.095:2
chr2	107041403	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:150,10:32:160:0.063:2	./.	./.	0/1:128,4:32:132:0.030:2	0/1:153,6:31:159:0.038:2	./.	./.	./.	./.	0/1:108,5:32:113:0.044:2	./.
chr2	107041424	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.	./.
chr2	107041582	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,28:32:190:0.147:2	./.	./.	./.
chr2	107041612	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,33:31:162:0.205:2	0/1:126,32:32:158:0.203:2	0/1:50,9:32:60:0.153:2	0/1:141,23:32:164:0.140:2	0/1:118,38:31:158:0.244:2	./.	0/1:137,18:33:156:0.116:2	./.	0/1:162,29:31:191:0.152:2	0/1:133,39:32:173:0.227:2	0/1:159,24:29:183:0.131:2
chr2	107041638	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:152,16:33:168:0.095:2	0/1:112,14:30:126:0.111:2	./.	0/1:130,13:32:143:0.091:2	./.	./.	./.	./.	./.	0/1:132,6:31:138:0.043:2	./.
chr2	107049392	rs62152467	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,63:33:186:0.339:2	0/1:131,66:32:198:0.335:2	0/1:63,20:31:83:0.241:2	0/1:158,37:32:195:0.190:2	0/1:123,71:32:196:0.366:2	0/1:115,72:31:188:0.385:2	0/1:171,26:32:197:0.132:2	0/1:160,28:31:189:0.149:2	0/1:164,30:33:194:0.155:2	0/1:118,77:32:195:0.395:2	0/1:158,35:33:193:0.181:2
chr2	107049414	rs199953271	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:30:188:0.032:2	./.	./.	./.
chr2	107049425	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:28:194:0.031:2	./.	./.	./.
chr2	107049447	rs200831096	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,44:30:183:0.240:2	0/1:116,17:30:133:0.128:2	0/1:63,9:30:72:0.125:2	0/1:161,31:31:193:0.161:2	0/1:115,32:30:147:0.218:2	0/1:136,56:30:192:0.292:2	0/1:121,9:30:130:0.069:2	0/1:171,14:29:185:0.076:2	0/1:168,25:31:193:0.130:2	0/1:135,52:31:187:0.278:2	0/1:166,24:30:190:0.126:2
chr2	107049604	rs200768799	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,47:30:190:0.247:2	0/1:86,26:29:112:0.232:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	107049703	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,8:31:184:0.043:2	./.	./.	./.
chr2	107049714	rs143879890	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,98:33:196:0.500:2	0/1:96,85:32:181:0.470:2	0/1:37,9:32:46:0.196:2	0/1:132,54:33:186:0.290:2	0/1:135,37:32:172:0.215:2	0/1:135,50:32:185:0.270:2	0/1:128,51:32:179:0.285:2	0/1:122,46:32:168:0.274:2	0/1:124,56:33:180:0.311:2	0/1:90,75:32:165:0.455:2	./.
chr2	107052580	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,8:27:195:0.041:2	./.	./.	./.	./.	0/1:188,7:31:195:0.036:2
chr2	107052592	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:193:0.032:2
chr2	107052596	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:194:0.021:2	./.	./.	./.	./.	./.
chr2	107053276	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.
chr2	107055462	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,36:32:200:0.180:2	./.	./.	./.	./.	./.	./.
chr2	107055554	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,26:31:194:0.134:2	./.	./.	0/1:156,40:31:196:0.204:2	./.	./.	./.
chr2	107055633	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,28:31:189:0.148:2	./.	./.	0/1:143,34:32:177:0.192:2	./.	./.	./.
chr2	107073469	rs76857936	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,49:34:189:0.259:2	0/1:135,62:33:197:0.315:2	0/1:34,18:31:52:0.346:2	0/1:156,39:33:195:0.200:2	0/1:152,47:33:199:0.236:2	0/1:38,151:32:189:0.799:2	0/1:145,53:33:198:0.268:2	0/1:11,184:32:195:0.944:2	0/1:19,168:34:187:0.898:2	./.	0/1:147,49:33:196:0.250:2
chr2	107073489	rs199932968	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:170,20:30:190:0.105:2	0/1:190,10:31:200:0.050:2	./.	0/1:189,9:33:198:0.045:2	0/1:185,9:31:194:0.046:2	0/1:172,14:30:188:0.075:2	0/1:188,7:32:195:0.036:2	0/1:181,7:30:188:0.037:2	0/1:188,10:32:198:0.051:2	0/1:184,11:29:195:0.056:2	./.
chr2	107073501	rs72627454	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,52:32:195:0.267:2	0/1:141,51:32:192:0.266:2	0/1:32,22:30:54:0.407:2	0/1:154,42:31:196:0.214:2	0/1:148,44:30:192:0.229:2	0/1:35,146:30:181:0.807:2	0/1:139,52:30:191:0.272:2	0/1:16,154:31:170:0.906:2	0/1:18,153:32:171:0.895:2	./.	0/1:144,51:31:195:0.262:2
chr2	107074108	rs200571685	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,40:33:149:0.268:2
chr2	107084664	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:29:13:0.231:2	./.	./.	./.	./.	./.	0/1:15,5:30:20:0.250:2
chr2	107084739	rs6718521	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,35:32:72:0.486:2	0/1:36,17:32:53:0.321:2	./.	./.	0/1:45,12:32:57:0.211:2	./.	./.	0/1:1,54:32:55:0.982:2	0/1:3,60:33:63:0.952:2	./.	./.
chr2	107423188	rs1470591	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:33:67:0.985:2	0/1:0,32:33:32:1.00:2	0/1:3,7:32:10:0.700:2	0/1:33,39:33:72:0.542:2	0/1:36,45:32:81:0.556:2	0/1:0,97:31:97:1.00:2	0/1:35,48:32:83:0.578:2	./.	0/1:35,46:33:81:0.568:2	./.	0/1:46,59:33:105:0.562:2
chr2	107423193	rs34558933	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,45:32:86:0.523:2	./.	./.	./.	./.	./.	./.
chr2	107423395	rs1470590	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,50:32:51:1.00:2	0/1:1,6:31:7:0.857:2	0/1:48,24:33:72:0.333:2	0/1:0,53:32:53:1.00:2	0/1:0,70:32:70:1.00:2	0/1:3,82:32:85:0.965:2	0/1:37,36:33:73:0.493:2	0/1:28,30:33:58:0.517:2	./.	0/1:28,26:34:54:0.481:2
chr2	107450525	rs12615112	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:31:14:0.214:2	0/1:85,61:30:146:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr2	107450569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.
chr2	107450589	rs3796111	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,47:32:104:0.452:2	0/1:37,33:33:70:0.471:2	./.	./.	0/1:56,70:32:126:0.556:2	./.	./.	./.
chr2	107459974	rs3796110	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,39:31:62:0.629:2	./.	./.	0/1:39,33:32:72:0.458:2	./.	./.	./.
chr2	108443511	rs7576738	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:0,27:30:27:1.00:2	0/1:7,5:32:12:0.417:2	0/1:34,40:30:74:0.541:2	0/1:0,46:30:46:1.00:2	0/1:0,67:31:67:1.00:2	0/1:11,7:30:18:0.389:2	0/1:46,32:30:78:0.410:2	0/1:44,12:31:56:0.214:2	0/1:1,63:29:64:0.984:2	0/1:16,5:28:21:0.238:2
chr2	108454739	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,33:33:165:0.200:2
chr2	108471045	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.
chr2	108473216	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,26:31:193:0.135:2	./.	./.	0/1:171,27:32:198:0.136:2	./.	./.	./.
chr2	108473295	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,31:30:198:0.157:2	./.	./.	0/1:162,34:31:196:0.173:2	./.	./.	./.
chr2	108473387	rs371792535	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,30:31:176:0.170:2	./.	./.	./.	./.	./.	./.
chr2	108475580	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.
chr2	108475928	rs143215949	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,6:32:34:0.176:2	./.	0/1:155,39:32:194:0.201:2	./.	0/1:156,40:32:196:0.204:2	./.	./.	./.	0/1:141,50:33:191:0.262:2
chr2	108475958	rs142985549	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,148:33:150:0.987:2	0/1:0,73:32:73:1.00:2	0/1:21,14:33:35:0.400:2	0/1:77,93:33:170:0.547:2	0/1:54,114:32:168:0.679:2	0/1:8,137:32:145:0.945:2	0/1:105,60:33:165:0.364:2	0/1:82,74:33:156:0.474:2	0/1:94,87:33:181:0.481:2	0/1:5,155:32:160:0.969:2	0/1:114,47:33:161:0.292:2
chr2	108476284	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.	./.
chr2	108476300	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2	./.	./.
chr2	108478078	rs200047014	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.
chr2	108479165	rs200602090	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,10:32:42:0.238:2	0/1:21,9:31:30:0.300:2	./.	0/1:140,15:33:155:0.097:2	0/1:27,15:31:42:0.357:2	0/1:60,7:29:67:0.104:2	0/1:119,7:32:126:0.056:2	0/1:186,7:32:193:0.036:2	0/1:166,18:33:184:0.098:2	0/1:49,17:32:66:0.258:2	./.
chr2	108479275	rs201818344	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,9:29:70:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	108479432	rs200501106	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,126:31:182:0.692:2	0/1:54,140:31:194:0.722:2	0/1:44,20:31:64:0.313:2	0/1:147,50:32:197:0.254:2	0/1:73,121:30:194:0.624:2	0/1:67,126:30:193:0.653:2	0/1:146,47:31:193:0.244:2	0/1:154,42:32:196:0.214:2	0/1:140,50:32:190:0.263:2	0/1:76,120:31:196:0.612:2	0/1:140,54:31:194:0.278:2
chr2	108479454	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:29:195:0.026:2	./.	./.	./.	./.
chr2	108479465	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:32:195:0.036:2	./.	./.	./.	./.
chr2	108479471	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,4:32:187:0.022:2	./.	./.	./.	./.	./.	./.
chr2	108479477	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.	./.
chr2	108479487	rs199689341	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,112:32:193:0.580:2	0/1:91,92:32:184:0.503:2	0/1:58,16:32:76:0.216:2	0/1:150,47:31:197:0.239:2	0/1:90,79:32:169:0.467:2	0/1:98,97:31:196:0.497:2	0/1:136,34:32:170:0.200:2	0/1:155,39:32:194:0.201:2	0/1:147,50:33:197:0.254:2	0/1:102,91:32:193:0.472:2	0/1:140,54:32:194:0.278:2
chr2	108487178	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,6:34:81:0.074:2	./.	0/1:117,4:35:121:0.033:2	./.	0/1:148,5:34:153:0.033:2
chr2	108487266	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:181,12:32:193:0.062:2	0/1:165,8:33:173:0.046:2	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	0/1:188,7:33:195:0.036:2	./.
chr2	108487330	rs148409227	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,101:32:192:0.526:2	0/1:66,123:32:189:0.651:2	0/1:108,41:32:149:0.275:2	0/1:144,51:33:195:0.262:2	0/1:92,99:32:191:0.518:2	0/1:79,114:32:193:0.591:2	0/1:173,23:32:196:0.117:2	0/1:144,51:33:195:0.262:2	0/1:147,49:33:196:0.250:2	0/1:102,91:32:193:0.472:2	0/1:126,60:33:186:0.323:2
chr2	108487463	rs200660520	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,22:33:116:0.190:2	./.	./.	./.	./.	./.	./.	./.
chr2	108487685	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.	./.	./.
chr2	108487826	rs62150212	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	0/1:2,3:30:5:0.600:2	0/1:0,3:30:3:1.00:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.
chr2	108487829	rs141407602	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.
chr2	108487877	rs199986270	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:28:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr2	108488219	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:35:197:0.020:2	./.	./.	./.
chr2	108488317	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr2	108488742	rs147825872	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,57:31:79:0.722:2	0/1:17,35:31:52:0.673:2	0/1:4,3:30:7:0.429:2	0/1:37,27:31:64:0.422:2	0/1:36,23:30:59:0.390:2	0/1:39,16:30:55:0.291:2	0/1:28,11:28:39:0.282:2	0/1:36,19:31:55:0.345:2	0/1:25,21:32:46:0.457:2	0/1:12,44:32:56:0.786:2	./.
chr2	108489066	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:161,21:32:182:0.115:2	0/1:79,9:33:88:0.102:2	./.	./.	0/1:87,10:33:97:0.103:2	./.	./.	0/1:91,11:31:102:0.108:2	./.	./.	./.
chr2	108489362	rs200040211	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,4:28:21:0.190:2	./.	./.	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.
chr2	108496435	rs832352	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,153:32:193:0.793:2	0/1:17,137:32:154:0.890:2	0/1:10,12:29:22:0.545:2	0/1:117,82:31:199:0.412:2	0/1:47,135:31:182:0.742:2	0/1:44,154:30:198:0.778:2	0/1:109,45:30:154:0.292:2	0/1:135,64:31:199:0.322:2	0/1:121,77:32:198:0.389:2	0/1:44,149:31:193:0.772:2	0/1:127,69:32:196:0.352:2
chr2	108496438	rs201885175	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:186,11:30:197:0.056:2	0/1:160,8:31:168:0.048:2	./.	./.	0/1:178,12:29:191:0.063:2	./.	./.	0/1:186,13:29:199:0.065:2	./.	0/1:176,20:29:196:0.102:2	0/1:181,14:31:195:0.072:2
chr2	108496503	rs202136029	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	0/1:192,4:34:196:0.020:2	0/1:190,8:34:198:0.040:2	./.	0/1:188,5:34:193:0.026:2	./.
chr2	108496525	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:113,4:31:117:0.034:2	0/1:192,5:32:197:0.025:2	0/1:194,6:30:200:0.030:2	0/1:192,5:33:197:0.025:2	0/1:195,4:32:199:0.020:2	0/1:193,5:30:198:0.025:2	./.	./.	./.
chr2	108499177	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:29:195:0.026:2	./.	./.	./.
chr2	108507177	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:30:176:0.028:2	./.	0/1:168,11:31:179:0.061:2	./.	./.	./.
chr2	108507185	rs369515710	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	0/1:179,7:33:186:0.038:2	0/1:169,10:33:179:0.056:2	./.	./.	./.
chr2	108507211	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,7:32:179:0.039:2	./.	0/1:164,10:31:175:0.057:2	./.	./.	./.
chr2	108863650	rs9646947	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	0/1:18,15:32:33:0.455:2	0/1:32,32:32:64:0.500:2	0/1:29,29:32:58:0.500:2	0/1:32,25:32:57:0.439:2	0/1:45,36:30:81:0.444:2
chr2	108863728	rs114486672	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	108863767	rs9308806	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:74,64:33:138:0.464:2	0/1:39,39:32:78:0.500:2	0/1:0,93:31:93:1.00:2	0/1:44,45:31:89:0.506:2	0/1:0,110:33:111:1.00:2	0/1:80,78:33:158:0.494:2	0/1:52,63:32:115:0.548:2	0/1:104,76:33:180:0.422:2
chr2	108875198	rs2219078	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:33:17:0.529:2	0/1:52,53:33:105:0.505:2	0/1:40,31:32:71:0.437:2	./.	./.	0/1:69,32:33:101:0.317:2	./.	./.	./.
chr2	108875244	rs6722745	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:28:11:0.364:2	0/1:36,30:29:66:0.455:2	0/1:19,22:27:41:0.537:2	0/1:39,49:28:88:0.557:2	./.	0/1:51,18:28:69:0.261:2	./.	./.	./.
chr2	108910751	rs17036058	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,34:30:71:0.479:2	./.	./.	./.	./.	./.	./.
chr2	108922036	rs17036104	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,53:30:97:0.546:2
chr2	108994808	rs1402467	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:1,50:32:51:0.980:2	./.	0/1:36,32:33:68:0.471:2	0/1:28,22:31:50:0.440:2	./.	0/1:26,40:33:66:0.606:2	0/1:2,83:32:85:0.976:2	./.	./.	0/1:41,49:34:90:0.544:2
chr2	109099572	rs2718698	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:1,34:32:35:0.971:2	0/1:0,3:32:3:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,70:32:71:0.986:2
chr2	109106381	rs12104502	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,67:33:121:0.554:2	0/1:34,28:33:62:0.452:2	0/1:0,5:33:5:1.00:2	0/1:101,69:33:170:0.406:2	0/1:73,47:32:120:0.392:2	0/1:76,47:32:123:0.382:2	0/1:52,48:33:100:0.480:2	0/1:83,51:33:134:0.381:2	0/1:90,65:34:155:0.419:2	0/1:65,54:32:120:0.454:2	./.
chr2	109113437	.	T	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,20:32:199:0.101:2	0/1:123,9:32:132:0.068:2	./.	0/1:172,12:32:184:0.065:2	0/1:121,13:31:134:0.097:2	0/1:173,13:31:186:0.070:2	0/1:96,10:32:107:0.094:2	0/1:144,15:32:159:0.094:2	0/1:180,8:34:188:0.043:2	0/1:179,16:32:195:0.082:2	0/1:190,9:33:199:0.045:2
chr2	109113440	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:188,8:28:196:0.041:2	./.	./.	./.	0/1:120,16:29:136:0.118:2	./.	0/1:102,5:31:107:0.047:2	0/1:152,8:30:160:0.050:2	./.	0/1:187,11:31:199:0.056:2	0/1:190,9:29:199:0.045:2
chr2	109113454	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,6:30:140:0.043:2	0/1:195,4:32:199:0.020:2	0/1:106,7:31:113:0.062:2	./.	./.	./.	./.
chr2	109113479	.	A	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:187,5:34:192:0.026:2	0/1:188,7:32:195:0.036:2	./.	0/1:187,6:35:193:0.031:2	0/1:151,11:34:162:0.068:2	0/1:190,4:33:194:0.021:2	./.	./.	0/1:182,7:30:189:0.037:2	0/1:191,4:34:195:0.021:2	0/1:187,5:33:192:0.026:2
chr2	109113483	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.
chr2	109124024	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,11:28:193:0.057:2	0/1:143,7:30:150:0.047:2	./.	./.	./.	./.
chr2	109124064	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,6:29:184:0.033:2	./.	0/1:179,9:29:188:0.048:2	0/1:182,9:28:191:0.047:2	./.	./.	./.	./.
chr2	109124073	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr2	109150984	rs143715745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:25:8:0.500:2	./.	./.	./.
chr2	109276099	rs74632558	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,56:33:192:0.292:2	0/1:118,73:31:191:0.382:2	0/1:63,47:31:110:0.427:2	0/1:92,101:31:193:0.523:2	0/1:101,94:31:195:0.482:2	./.	./.	0/1:158,36:31:194:0.186:2	./.	0/1:105,92:32:197:0.467:2	./.
chr2	109276178	rs201135021	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,55:32:188:0.293:2	0/1:122,69:32:191:0.361:2	0/1:94,75:31:169:0.444:2	0/1:113,83:32:196:0.423:2	0/1:107,85:32:192:0.443:2	0/1:193,4:32:197:0.020:2	0/1:182,8:32:190:0.042:2	0/1:100,96:32:196:0.490:2	./.	0/1:118,74:33:192:0.385:2	./.
chr2	109276221	rs142370461	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,58:32:196:0.296:2	./.	./.
chr2	109293130	rs115305258	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,7:31:136:0.051:2	0/1:81,5:28:86:0.058:2	./.	./.	./.	./.	./.	./.	0/1:179,7:31:186:0.038:2	./.	./.
chr2	109297236	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,10:32:189:0.053:2	./.	./.	0/1:178,15:31:193:0.078:2	0/1:184,12:32:196:0.061:2	0/1:164,27:32:191:0.141:2	./.	0/1:166,21:32:187:0.112:2	./.	0/1:157,27:32:184:0.147:2	./.
chr2	109365570	rs200373569	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,19:32:191:0.100:2	./.	./.	./.	./.	./.	./.
chr2	109369479	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:185,5:30:190:0.026:2	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	0/1:190,4:32:195:0.021:2
chr2	109369485	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:188,5:28:193:0.026:2	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	109371388	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,5:32:174:0.029:2	./.	./.	./.	./.	./.	./.
chr2	109371399	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.
chr2	109371659	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	0/1:188,5:33:193:0.026:2	./.
chr2	109371685	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,7:30:198:0.035:2	0/1:180,7:30:188:0.037:2	./.	./.	./.	./.
chr2	109374952	rs826549	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,70:30:144:0.486:2	0/1:38,45:30:83:0.542:2	./.	./.	0/1:99,49:30:148:0.331:2	./.	./.	./.	0/1:85,75:31:160:0.469:2	0/1:73,48:30:121:0.397:2	0/1:78,78:30:156:0.500:2
chr2	109381438	rs61748149	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,47:32:95:0.495:2	0/1:28,27:32:55:0.491:2	./.	./.	0/1:37,22:31:59:0.373:2	./.	./.	./.	./.	./.	0/1:61,50:33:111:0.450:2
chr2	109381993	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:32:196:0.036:2	./.	./.	./.
chr2	109382170	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:184,11:33:195:0.056:2	0/1:186,9:31:195:0.046:2	./.	0/1:189,5:34:194:0.026:2	0/1:176,16:32:192:0.083:2	0/1:186,8:28:194:0.041:2	./.	./.	0/1:189,5:32:194:0.026:2	0/1:182,9:31:191:0.047:2	./.
chr2	109382638	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:102:0.040:2	./.	./.	./.	./.
chr2	109382731	rs2556259	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,7:32:195:0.036:2	./.	./.	./.	./.	./.	./.
chr2	109382751	rs2912700	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:186,8:33:194:0.041:2	0/1:194,5:32:199:0.025:2	./.	0/1:195,4:33:199:0.020:2	0/1:182,9:33:191:0.047:2	./.	./.	./.	./.	0/1:191,5:34:196:0.026:2	0/1:188,5:34:193:0.026:2
chr2	109382790	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	109382843	rs2912701	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.	./.	./.	./.
chr2	109382940	rs2919158	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,5:29:116:0.043:2	./.	./.	./.	./.	./.	./.
chr2	109383772	rs2918641	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	0/1:150,5:33:155:0.032:2	./.	./.	0/1:188,4:32:192:0.021:2	./.
chr2	109383777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:32:146:0.034:2	./.	./.	./.	./.
chr2	109383866	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	109384083	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,63:32:179:0.352:2
chr2	109384167	rs200157805	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,15:31:65:0.231:2	0/1:40,7:31:47:0.149:2	./.	./.	0/1:30,5:31:35:0.143:2	./.	./.	./.	./.	./.	./.
chr2	109384785	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.	./.	./.
chr2	109389463	rs826580	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:91:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,129:32:129:1.00:2
chr2	109397795	rs199918785	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,100:32:197:0.508:2	./.	./.	./.	./.	./.
chr2	109408159	rs35794776	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,14:33:31:0.452:2	0/1:13,4:32:17:0.235:2	./.	./.	0/1:24,15:30:39:0.385:2	./.	./.	./.	./.	./.	0/1:28,17:32:45:0.378:2
chr2	109408208	rs6740879	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	0/1:5,11:32:16:0.688:2	0/1:10,9:31:19:0.474:2	0/1:13,10:32:23:0.435:2
chr2	109411147	rs13424880	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:33:45:0.422:2	./.	./.
chr2	109429146	rs975597	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,58:32:103:0.563:2	0/1:30,28:32:58:0.483:2	0/1:0,14:31:14:1.00:2	0/1:0,89:32:89:1.00:2	0/1:29,34:30:63:0.540:2	0/1:2,101:31:103:0.981:2	0/1:0,60:31:60:1.00:2	0/1:0,107:31:107:1.00:2	0/1:58,73:32:131:0.557:2	0/1:47,45:32:92:0.489:2	0/1:66,67:32:133:0.504:2
chr2	109513654	rs12623957	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,25:32:49:0.510:2	0/1:19,12:31:31:0.387:2	0/1:0,10:31:10:1.00:2	0/1:2,69:31:71:0.972:2	0/1:47,36:31:83:0.434:2	0/1:1,65:31:66:0.985:2	0/1:0,65:31:65:1.00:2	0/1:0,82:31:83:1.00:2	0/1:52,36:32:88:0.409:2	0/1:0,71:32:71:1.00:2	0/1:24,26:31:50:0.520:2
chr2	109526969	rs260632	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:33:101:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,10:31:11:0.909:2	0/1:0,126:33:126:1.00:2	0/1:1,117:32:118:0.992:2	0/1:0,143:32:144:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,147:33:147:1.00:2	0/1:74,77:34:151:0.510:2	0/1:0,123:33:123:1.00:2	0/1:0,157:33:157:1.00:2
chr2	109527373	rs260630	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:32:114:1.00:2	0/1:1,56:33:57:0.982:2	0/1:0,17:32:17:1.00:2	0/1:1,138:32:139:0.993:2	0/1:1,149:32:150:0.993:2	0/1:0,155:32:155:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,159:32:159:1.00:2	0/1:95,45:32:140:0.321:2	0/1:0,104:32:104:1.00:2	0/1:0,134:32:134:1.00:2
chr2	109539913	rs748225	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,18:32:45:0.400:2	0/1:12,12:31:24:0.500:2	./.	./.	0/1:31,32:31:63:0.508:2	./.	./.	./.	./.	./.	0/1:28,18:31:46:0.391:2
chr2	110015057	rs201743885	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:34:33:0.364:2
chr2	110015138	rs117154967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:31:76:0.513:2
chr2	110015309	rs10181644	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:31:82:0.402:2
chr2	110048972	rs115992510	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2
chr2	110259164	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	110310707	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:35:169:0.024:2	./.	./.
chr2	110322067	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.	./.
chr2	110325481	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.
chr2	110325497	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.	./.
chr2	110373197	rs1560884	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:31:34:0.441:2	0/1:11,10:33:21:0.476:2	./.	./.	./.	0/1:21,16:31:37:0.432:2	0/1:12,7:32:19:0.368:2	./.	./.	0/1:11,10:32:21:0.476:2	0/1:16,6:31:22:0.273:2
chr2	110373805	rs4953847	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:65,60:32:125:0.480:2	0/1:28,27:32:55:0.491:2	0/1:5,4:34:9:0.444:2	./.	./.	./.	./.	./.	./.	0/1:48,79:32:127:0.622:2	./.
chr2	110373849	rs4953848	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:32:105:0.476:2	0/1:29,24:32:53:0.453:2	./.	./.	./.	./.	./.	./.	./.	0/1:51,54:32:105:0.514:2	./.
chr2	110373919	rs4953849	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:32:88:0.511:2	0/1:32,22:32:54:0.407:2	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:33:70:0.400:2	./.
chr2	110373938	rs4953850	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,84:32:84:1.00:2	0/1:0,45:32:45:1.00:2	0/1:4,5:32:9:0.556:2	./.	./.	0/1:45,41:32:86:0.477:2	0/1:24,27:32:51:0.529:2	./.	./.	0/1:0,50:33:50:1.00:2	0/1:37,43:33:80:0.538:2
chr2	110374215	rs6726252	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,30:32:30:1.00:2	0/1:4,26:33:30:0.867:2	0/1:1,3:34:4:0.750:2	./.	./.	0/1:12,12:32:24:0.500:2	0/1:10,6:34:16:0.375:2	./.	./.	0/1:0,27:33:27:1.00:2	0/1:28,18:33:46:0.391:2
chr2	110375025	rs6594049	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,56:32:56:1.00:2	0/1:1,31:32:32:0.969:2	0/1:4,5:31:9:0.556:2	./.	./.	0/1:33,25:31:58:0.431:2	0/1:18,16:32:34:0.471:2	./.	./.	0/1:0,41:31:41:1.00:2	0/1:55,37:31:92:0.402:2
chr2	110375151	rs6594050	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,15:32:41:0.366:2	0/1:12,13:33:25:0.520:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	./.
chr2	110376019	rs1046645	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,15:30:37:0.405:2	0/1:13,9:30:22:0.409:2	./.	./.	./.	0/1:42,24:29:66:0.364:2	0/1:16,19:30:35:0.543:2	./.	./.	0/1:22,15:30:37:0.405:2	0/1:52,34:30:86:0.395:2
chr2	110561657	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:188,8:31:196:0.041:2	0/1:171,10:32:181:0.055:2	./.	0/1:193,4:32:197:0.020:2	0/1:193,5:32:198:0.025:2	0/1:191,8:32:199:0.040:2	./.	0/1:193,4:32:197:0.020:2	./.	0/1:188,12:32:200:0.060:2	0/1:190,5:32:196:0.026:2
chr2	110579508	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,24:30:197:0.122:2	./.	./.	./.	./.	./.	./.
chr2	110581913	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:163,29:32:192:0.151:2	0/1:163,36:32:199:0.181:2	0/1:101,16:32:117:0.137:2	0/1:180,15:30:195:0.077:2	0/1:155,44:31:199:0.221:2	0/1:160,37:31:197:0.188:2	0/1:166,31:32:197:0.157:2	0/1:168,30:32:198:0.152:2	0/1:152,44:32:197:0.224:2	0/1:168,30:32:198:0.152:2	0/1:161,35:33:197:0.179:2
chr2	110581923	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	0/1:191,5:32:196:0.026:2	./.
chr2	110581950	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:31:186:0.027:2	./.
chr2	110585407	rs202214345	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:33:198:0.020:2	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.
chr2	110585506	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	0/1:91,12:32:103:0.117:2	./.	0/1:116,11:32:127:0.087:2
chr2	110585652	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,25:33:190:0.132:2	0/1:177,20:32:197:0.102:2	0/1:43,4:31:47:0.085:2	0/1:181,13:32:194:0.067:2	./.	0/1:142,48:33:190:0.253:2	0/1:164,28:32:192:0.146:2	0/1:175,17:33:192:0.089:2	0/1:127,62:33:189:0.328:2	./.	0/1:179,16:32:196:0.082:2
chr2	110593413	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.
chr2	110593480	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:169,23:31:192:0.120:2	0/1:124,8:32:132:0.061:2	./.	0/1:185,8:32:193:0.041:2	./.	./.	./.	./.	./.	0/1:139,14:31:153:0.092:2	./.
chr2	110593506	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,15:30:196:0.077:2	./.	./.	./.
chr2	110593536	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,22:30:192:0.115:2	0/1:180,16:31:196:0.082:2	0/1:52,9:30:61:0.148:2	0/1:189,8:30:197:0.041:2	0/1:157,40:29:197:0.203:2	./.	./.	./.	0/1:187,8:31:195:0.041:2	0/1:161,27:29:188:0.144:2	./.
chr2	110593694	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,22:30:122:0.180:2	./.	./.	./.	./.
chr2	110593829	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,16:29:61:0.262:2	0/1:39,9:31:48:0.188:2	./.	0/1:45,14:30:59:0.237:2	./.	0/1:43,7:29:50:0.140:2
chr2	110594061	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:32:26:0.269:2	0/1:27,4:33:31:0.129:2	./.	./.	./.	./.
chr2	110594454	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:179,13:32:192:0.068:2	0/1:191,6:32:197:0.030:2	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	0/1:185,13:32:198:0.066:2	./.	0/1:179,15:31:194:0.077:2	0/1:187,6:34:193:0.031:2
chr2	110594612	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,12:32:111:0.108:2	./.	./.	./.	./.
chr2	110594663	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:180,10:32:190:0.053:2	0/1:159,7:32:166:0.042:2	./.	./.	./.	./.	./.	0/1:155,5:28:160:0.031:2	./.	0/1:140,8:31:148:0.054:2	0/1:188,4:33:192:0.021:2
chr2	110595363	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2
chr2	110595406	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	0/1:100,6:31:106:0.057:2	./.	./.
chr2	110613439	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:35:188:0.021:2	./.	./.
chr2	110613453	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.	./.	./.	./.	./.	0/1:179,9:31:188:0.048:2	0/1:181,4:33:185:0.022:2
chr2	110660868	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,5:32:187:0.027:2	0/1:188,5:31:193:0.026:2	./.	0/1:175,19:29:194:0.098:2	0/1:178,20:30:198:0.101:2	./.	./.	0/1:150,9:31:159:0.057:2	./.	0/1:164,13:30:177:0.073:2	./.
chr2	110660947	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:184,7:32:191:0.037:2	./.	0/1:184,12:31:197:0.061:2	0/1:182,15:30:197:0.076:2	0/1:109,85:32:194:0.438:2	0/1:109,83:33:192:0.432:2	0/1:178,15:33:193:0.078:2	0/1:67,122:32:189:0.646:2	0/1:186,7:33:193:0.036:2	0/1:149,34:33:183:0.186:2
chr2	110661407	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:30:26:0.462:2	./.
chr2	110661411	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,5:30:36:0.139:2	./.	./.	0/1:22,3:30:25:0.120:2	./.	./.	./.	./.	./.	./.	./.
chr2	110663460	rs200907235	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,81:31:195:0.415:2	0/1:112,85:32:197:0.431:2	./.	0/1:92,102:33:194:0.526:2	./.	0/1:152,40:32:192:0.208:2
chr2	110663465	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:183,10:30:193:0.052:2	0/1:176,10:32:186:0.054:2	0/1:124,6:32:130:0.046:2	0/1:184,13:32:197:0.066:2	0/1:187,12:33:199:0.060:2	./.	./.	0/1:146,52:31:198:0.263:2	0/1:184,9:32:193:0.047:2	0/1:172,20:32:192:0.104:2	./.
chr2	110843328	rs200995754	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,16:31:65:0.246:2	./.	./.	./.	./.	./.	./.	./.
chr2	110849222	rs141095578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,13:31:101:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr2	110873353	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	110873355	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	110922703	rs11675767	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,101:32:101:1.00:2	0/1:0,59:32:60:1.00:2	0/1:7,11:32:18:0.611:2	./.	0/1:0,85:31:85:1.00:2	./.	./.	./.	./.	0/1:71,46:31:117:0.393:2	0/1:0,110:32:110:1.00:2
chr2	110959026	rs33958626	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,10:32:32:0.313:2	./.	./.	./.	./.
chr2	111223196	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:180,15:32:195:0.077:2	0/1:179,17:31:196:0.087:2	./.	0/1:172,24:31:196:0.122:2	0/1:169,28:32:197:0.142:2	./.	./.	0/1:136,59:31:195:0.303:2	0/1:173,17:33:190:0.089:2	0/1:149,45:32:194:0.232:2	./.
chr2	111223201	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,72:32:194:0.371:2	0/1:116,78:32:194:0.402:2	./.	0/1:84,107:33:191:0.560:2	./.	0/1:152,37:33:189:0.196:2
chr2	111225714	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:90,4:32:94:0.043:2	0/1:189,7:32:196:0.036:2	./.	0/1:107,86:31:193:0.446:2	0/1:113,83:31:196:0.423:2	0/1:168,20:31:188:0.106:2	0/1:83,109:32:192:0.568:2	0/1:178,8:31:186:0.043:2	0/1:141,53:32:194:0.273:2
chr2	111225793	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:171,4:32:175:0.023:2	./.	./.	0/1:153,8:31:161:0.050:2	0/1:124,13:31:137:0.095:2	./.	./.	0/1:150,6:29:156:0.038:2	./.	0/1:160,7:31:167:0.042:2	./.
chr2	111273208	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.	0/1:179,5:31:184:0.027:2
chr2	111291226	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	111291480	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:33:32:0.094:2	./.	./.	./.	./.	./.
chr2	111291998	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:189,8:32:197:0.041:2	0/1:137,4:32:141:0.028:2	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	0/1:167,14:30:182:0.077:2	0/1:189,9:32:198:0.045:2
chr2	111292049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,24:31:158:0.152:2	./.	./.	./.	./.
chr2	111292207	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:184,12:32:196:0.061:2	0/1:166,7:28:173:0.040:2	./.	./.	0/1:154,6:32:160:0.038:2	./.	./.	0/1:163,13:32:176:0.074:2	./.	0/1:152,20:31:172:0.116:2	0/1:176,14:32:190:0.074:2
chr2	111292317	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,5:26:57:0.089:2	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:28:64:0.078:2	0/1:87,5:25:92:0.054:2
chr2	111292600	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.	./.	./.	./.	./.	./.
chr2	111292832	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,16:28:56:0.286:2	0/1:41,18:30:59:0.305:2	./.	0/1:56,16:30:72:0.222:2	./.	0/1:64,13:31:77:0.169:2
chr2	111292967	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,20:31:140:0.143:2	./.	./.	./.	./.
chr2	111293125	.	G	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:156,24:30:182:0.133:2	0/1:124,20:31:144:0.139:2	./.	0/1:177,10:30:188:0.053:2	0/1:131,24:30:155:0.155:2	./.	0/1:188,9:30:198:0.046:2	./.	./.	0/1:141,37:31:178:0.208:2	0/1:180,12:30:192:0.063:2
chr2	111293155	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,15:30:182:0.082:2	./.	./.	./.
chr2	111293181	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:154,16:31:170:0.094:2	0/1:103,10:31:113:0.088:2	./.	0/1:140,10:30:150:0.067:2	./.	./.	./.	./.	./.	0/1:123,14:32:137:0.102:2	./.
chr2	111301009	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,31:32:188:0.165:2	0/1:112,23:32:135:0.170:2	0/1:35,9:33:44:0.205:2	0/1:155,33:32:188:0.176:2	./.	0/1:131,56:31:187:0.299:2	0/1:104,22:32:126:0.175:2	0/1:138,27:32:165:0.164:2	0/1:95,89:33:184:0.484:2	./.	0/1:156,31:29:188:0.166:2
chr2	111301155	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,11:30:132:0.083:2	0/1:72,10:29:82:0.122:2	./.	0/1:93,27:32:120:0.225:2	./.	0/1:158,14:32:172:0.081:2
chr2	111301182	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:28:88:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	111301254	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:32:196:0.036:2	./.
chr2	111304132	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:199:0.020:2	./.
chr2	111304144	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.
chr2	111304738	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	./.
chr2	111304748	rs199635657	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,33:32:191:0.173:2	0/1:140,48:32:188:0.255:2	0/1:119,38:32:157:0.242:2	0/1:176,19:31:195:0.097:2	0/1:159,39:32:198:0.197:2	0/1:162,33:31:195:0.169:2	0/1:160,37:31:197:0.188:2	0/1:145,49:31:194:0.253:2	0/1:161,34:32:195:0.174:2	0/1:164,29:32:193:0.150:2	0/1:156,42:32:198:0.212:2
chr2	111307050	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:36:198:0.020:2	./.	./.	./.
chr2	111307153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,34:30:198:0.172:2	./.	./.	./.	./.	./.	./.
chr2	111325004	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,12:33:194:0.062:2	0/1:185,12:32:197:0.061:2	./.	0/1:173,22:32:197:0.113:2	0/1:190,8:32:198:0.040:2	0/1:178,15:31:194:0.078:2	0/1:190,5:34:196:0.026:2	0/1:185,9:31:194:0.046:2	0/1:183,9:33:193:0.047:2	0/1:184,14:30:198:0.071:2	0/1:180,5:32:185:0.027:2
chr2	111559231	rs34466366	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,64:30:164:0.390:2
chr2	111562875	rs77331476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:31:79:0.494:2	./.	./.	./.	./.	./.
chr2	111598958	rs1554005	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,67:32:143:0.469:2
chr2	111691206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.
chr2	111744738	rs116596490	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:28:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	111806832	rs139395474	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:31:78:0.513:2	./.	./.	./.
chr2	111881389	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.
chr2	111899881	rs3761706	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,72:32:173:0.416:2	./.	./.
chr2	111899886	rs201667919	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,17:15:137:0.124:2
chr2	111907691	rs724710	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,38:30:104:0.365:2	0/1:29,24:30:53:0.453:2	./.	0/1:92,61:31:153:0.399:2	0/1:86,49:30:135:0.363:2	0/1:0,145:29:145:1.00:2	0/1:78,63:29:141:0.447:2	0/1:80,74:30:154:0.481:2	0/1:2,132:30:134:0.985:2	0/1:0,93:28:93:1.00:2	0/1:1,94:30:95:0.989:2
chr2	112524547	rs370526532	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,64:30:196:0.327:2	./.	./.	0/1:127,67:31:195:0.345:2	./.	./.	./.
chr2	112524600	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,10:32:189:0.053:2	0/1:181,10:32:191:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	112526866	rs137999262	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,171:33:196:0.872:2	./.	./.	0/1:128,68:33:196:0.347:2	./.	0/1:128,69:33:198:0.350:2	./.
chr2	112536264	rs76115652	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,191:33:191:1.00:2	0/1:0,145:32:146:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,191:32:191:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,115:31:115:1.00:2	./.	0/1:0,193:31:193:1.00:2	0/1:0,191:33:191:1.00:2	0/1:1,104:32:105:0.990:2	0/1:2,182:32:184:0.989:2
chr2	112539956	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,15:33:123:0.122:2	./.	./.	./.	./.	./.	./.
chr2	112542959	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:124,69:31:193:0.358:2	0/1:131,61:31:192:0.318:2	./.	./.	0/1:155,43:31:198:0.217:2	./.	0/1:160,32:30:192:0.167:2	./.	0/1:121,73:32:194:0.376:2	./.	0/1:146,40:31:186:0.215:2
chr2	112551673	rs200630962	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.
chr2	112552427	rs190739040	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,99:31:193:0.516:2	./.	./.	0/1:145,52:32:197:0.264:2	./.	0/1:147,49:32:197:0.250:2	./.
chr2	112560090	rs142711068	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,77:30:198:0.389:2	./.	./.	0/1:165,30:31:195:0.154:2	./.	0/1:149,37:31:186:0.199:2	./.
chr2	112561063	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:145,11:31:157:0.071:2	0/1:92,9:31:101:0.089:2	./.	./.	0/1:149,10:31:159:0.063:2	./.	0/1:141,14:30:155:0.090:2	./.	0/1:158,19:29:177:0.107:2	./.	0/1:167,12:32:179:0.067:2
chr2	112561389	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,14:31:69:0.203:2	./.	0/1:8,3:30:11:0.273:2	./.	0/1:76,17:30:93:0.183:2	./.	./.	./.	./.	./.	./.
chr2	112573100	.	A	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,26:28:82:0.321:2	0/1:30,11:30:41:0.268:2	./.	0/1:85,7:30:92:0.076:2	./.	0/1:98,17:30:115:0.148:2	./.	0/1:121,13:29:134:0.097:2	0/1:84,15:29:99:0.152:2	0/1:74,19:29:93:0.204:2	0/1:69,14:30:83:0.169:2
chr2	112573154	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,28:31:89:0.315:2	0/1:34,13:31:47:0.277:2	./.	./.	0/1:127,17:31:144:0.118:2	./.	0/1:127,17:30:144:0.118:2	./.	0/1:83,16:32:99:0.162:2	./.	0/1:94,14:31:108:0.130:2
chr2	112578833	rs199837741	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,3:33:30:0.100:2	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.
chr2	112578912	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	0/1:182,8:30:190:0.042:2	./.	./.	./.	./.
chr2	112578915	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,9:31:189:0.048:2	./.	0/1:128,4:32:132:0.030:2	./.	./.
chr2	112578926	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:142,5:32:147:0.034:2	./.	./.	./.	./.	./.	./.
chr2	112588974	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:191,6:32:197:0.030:2	0/1:167,7:31:174:0.040:2	./.	./.	0/1:194,6:31:200:0.030:2	./.	0/1:186,7:32:193:0.036:2	./.	./.	./.	./.
chr2	112588975	rs147457004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,73:32:196:0.372:2	./.
chr2	112590838	rs139503565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,17:31:197:0.086:2	./.	./.	./.
chr2	112605302	rs4848197	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,65:33:67:0.970:2	0/1:2,36:32:38:0.947:2	./.	0/1:61,31:32:92:0.337:2	0/1:1,33:31:34:0.971:2	0/1:87,26:32:113:0.230:2	./.	0/1:0,64:31:64:1.00:2	0/1:88,25:33:113:0.221:2	0/1:0,47:32:47:1.00:2	0/1:98,34:32:132:0.258:2
chr2	112605429	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr2	112605439	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.
chr2	112608423	rs147684628	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,33:33:164:0.201:2	./.	./.	./.	./.
chr2	112614266	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,7:31:98:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr2	112614384	rs141604036	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,39:32:197:0.198:2	0/1:170,24:32:194:0.124:2
chr2	112614429	rs72936240	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,51:33:161:0.317:2	0/1:61,44:32:105:0.419:2	0/1:22,11:31:33:0.333:2	0/1:95,56:32:151:0.371:2	0/1:95,51:31:146:0.349:2	0/1:116,39:31:155:0.252:2	0/1:95,50:32:145:0.345:2	0/1:87,52:32:139:0.374:2	0/1:89,65:33:154:0.422:2	0/1:90,75:32:165:0.455:2	0/1:117,24:31:141:0.170:2
chr2	112615888	rs79100806	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,15:33:141:0.106:2	0/1:86,5:33:91:0.055:2	0/1:18,3:34:21:0.143:2	0/1:149,21:33:170:0.124:2	0/1:100,11:32:111:0.099:2	./.	0/1:95,5:34:100:0.050:2	0/1:188,8:33:196:0.041:2	0/1:172,16:34:188:0.085:2	0/1:138,20:31:158:0.127:2	0/1:186,11:32:197:0.056:2
chr2	112615933	rs72936244	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,50:32:181:0.276:2	0/1:100,25:31:125:0.200:2	0/1:16,10:33:26:0.385:2	0/1:146,48:31:194:0.247:2	0/1:117,40:31:157:0.255:2	0/1:177,17:32:194:0.088:2	0/1:105,30:32:135:0.222:2	0/1:156,29:32:185:0.157:2	0/1:154,40:33:194:0.206:2	0/1:147,46:32:193:0.238:2	0/1:164,21:32:185:0.114:2
chr2	112619981	rs201128090	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,44:32:167:0.263:2	0/1:76,23:32:99:0.232:2	0/1:18,4:30:22:0.182:2	0/1:159,30:32:189:0.159:2	0/1:109,13:31:122:0.107:2	0/1:128,38:32:166:0.229:2	0/1:98,28:32:126:0.222:2	0/1:158,40:31:198:0.202:2	0/1:160,36:33:196:0.184:2	0/1:135,10:32:145:0.069:2	0/1:178,21:31:199:0.106:2
chr2	112622513	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:32:150:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	112625615	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:183,9:32:193:0.047:2	0/1:174,19:32:193:0.098:2	./.	0/1:175,18:33:194:0.093:2	0/1:158,13:31:171:0.076:2	0/1:171,22:31:193:0.114:2	0/1:158,10:33:168:0.060:2	0/1:175,18:30:193:0.093:2	0/1:178,13:35:192:0.068:2	0/1:182,13:33:195:0.067:2	0/1:184,9:33:194:0.047:2
chr2	112625621	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,15:32:193:0.078:2	0/1:180,6:32:186:0.032:2	./.	./.	./.	./.
chr2	112625661	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,24:32:195:0.123:2	0/1:161,35:32:196:0.179:2	0/1:44,14:32:58:0.241:2	0/1:155,41:33:196:0.209:2	0/1:170,23:31:193:0.119:2	0/1:146,46:32:193:0.240:2	0/1:167,28:32:195:0.144:2	0/1:159,36:32:195:0.185:2	0/1:146,39:34:185:0.211:2	0/1:161,37:32:198:0.187:2	0/1:153,38:32:191:0.199:2
chr2	112636450	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,22:29:199:0.111:2	./.	./.	./.	./.
chr2	112656392	rs115821982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr2	112686988	rs13027171	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,103:32:185:0.557:2	0/1:53,61:32:114:0.535:2	./.	./.	./.	0/1:5,153:31:158:0.968:2	0/1:76,45:31:121:0.372:2	./.	0/1:108,89:32:197:0.452:2	./.	0/1:97,93:32:190:0.489:2
chr2	112740420	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:27:198:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	112751928	rs7604639	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:74,55:32:129:0.426:2	0/1:40,39:32:79:0.494:2	0/1:5,9:31:14:0.643:2	./.	./.	0/1:2,160:31:162:0.988:2	0/1:89,85:31:174:0.489:2	0/1:102,83:31:185:0.449:2	0/1:1,181:32:182:0.995:2	0/1:0,133:31:133:1.00:2	0/1:96,63:30:159:0.396:2
chr2	112754943	rs3811634	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,44:31:112:0.393:2	0/1:22,27:32:49:0.551:2	./.	./.	./.	0/1:2,82:31:84:0.976:2	0/1:51,17:31:68:0.250:2	./.	0/1:57,43:32:100:0.430:2	./.	0/1:45,48:32:93:0.516:2
chr2	112755001	rs2230515	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,32:31:78:0.410:2	0/1:18,24:32:42:0.571:2	./.	./.	./.	0/1:0,47:32:47:1.00:2	0/1:18,18:33:36:0.500:2	0/1:35,30:33:65:0.462:2	0/1:0,53:33:53:1.00:2	0/1:0,71:32:72:1.00:2	0/1:29,30:31:59:0.508:2
chr2	112765973	rs1131244	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,19:30:44:0.432:2	0/1:6,12:29:18:0.667:2	./.	./.	./.	0/1:1,45:30:46:0.978:2	0/1:30,19:29:49:0.388:2	0/1:33,26:28:60:0.441:2	0/1:0,43:30:43:1.00:2	0/1:0,25:29:25:1.00:2	0/1:27,22:29:49:0.449:2
chr2	112777022	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.
chr2	112786049	rs2230517	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.
chr2	112786357	rs10205793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.
chr2	112922679	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr2	112939544	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	113007757	rs17781007	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,18:32:46:0.391:2	./.	./.	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.
chr2	113067622	rs79245040	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	./.	./.	./.	./.	./.	./.	0/1:95,66:31:161:0.410:2
chr2	113074806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.
chr2	113082200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,5:27:141:0.035:2	./.	./.	./.	./.
chr2	113089267	rs7601200	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,20:32:46:0.435:2	0/1:20,14:32:34:0.412:2	./.	0/1:23,24:31:47:0.511:2	0/1:9,15:31:24:0.625:2	./.	0/1:11,10:33:21:0.476:2	0/1:13,30:32:43:0.698:2	./.	0/1:0,41:32:41:1.00:2	0/1:28,28:31:56:0.500:2
chr2	113090047	rs4578863	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,5:28:9:0.556:2	./.	./.	0/1:9,10:29:19:0.526:2	0/1:6,6:28:12:0.500:2	./.	0/1:3,5:26:8:0.625:2	./.	./.	0/1:0,2:28:2:1.00:2	0/1:7,3:25:10:0.300:2
chr2	113145814	rs200737546	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,5:33:140:0.036:2	./.	./.	./.	./.	0/1:120,73:31:193:0.378:2	0/1:99,47:32:146:0.322:2	./.	0/1:122,72:33:194:0.371:2	./.	0/1:136,55:33:191:0.288:2
chr2	113145900	rs201473406	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,5:32:23:0.217:2	0/1:4,7:32:11:0.636:2	./.	0/1:14,6:33:20:0.300:2	./.	0/1:82,5:32:87:0.057:2	./.	0/1:7,4:31:11:0.364:2	./.	0/1:5,3:34:8:0.375:2	0/1:78,5:33:83:0.060:2
chr2	113146243	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113146557	.	A	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:185,11:32:197:0.056:2	0/1:138,5:32:143:0.035:2	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	0/1:156,8:31:164:0.049:2	./.	0/1:155,12:31:167:0.072:2	0/1:191,6:32:197:0.030:2
chr2	113146608	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,24:32:168:0.143:2	./.	./.	./.	./.
chr2	113146766	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:172,6:32:179:0.034:2	0/1:167,7:32:174:0.040:2	./.	./.	0/1:139,6:30:145:0.041:2	./.	./.	0/1:164,7:29:171:0.041:2	./.	0/1:157,9:31:166:0.054:2	0/1:164,4:32:168:0.024:2
chr2	113147151	rs201952144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,13:32:46:0.283:2	./.	./.	./.
chr2	113147159	rs376193885	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,16:31:52:0.308:2	0/1:14,6:33:20:0.300:2	./.	0/1:21,5:31:26:0.192:2	0/1:20,11:33:31:0.355:2	0/1:24,14:31:38:0.368:2	0/1:28,5:33:33:0.152:2	0/1:32,13:33:45:0.289:2	0/1:14,7:34:21:0.333:2	0/1:15,9:33:24:0.375:2	0/1:18,4:33:22:0.182:2
chr2	113147217	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,5:31:36:0.139:2	./.	./.	./.	./.	./.	./.
chr2	113147238	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,5:32:42:0.119:2	./.	./.	./.	0/1:28,3:34:31:0.097:2	0/1:29,3:30:32:0.094:2	./.	./.	./.	./.	./.
chr2	113147391	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,18:30:64:0.281:2	0/1:51,10:31:61:0.164:2	./.	0/1:45,21:30:66:0.318:2	./.	0/1:69,18:30:87:0.207:2
chr2	113147526	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,16:32:100:0.160:2	./.	./.	./.	./.
chr2	113147666	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,35:31:192:0.182:2	0/1:150,37:30:187:0.198:2	0/1:84,6:31:90:0.067:2	0/1:180,17:31:197:0.086:2	0/1:119,51:30:170:0.300:2	./.	0/1:149,23:30:173:0.134:2	./.	0/1:180,15:32:196:0.077:2	0/1:157,35:31:192:0.182:2	0/1:168,20:30:188:0.106:2
chr2	113147740	rs201000445	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:139,20:31:159:0.126:2	0/1:114,11:31:125:0.088:2	./.	0/1:125,26:30:151:0.172:2	./.	./.	./.	./.	./.	0/1:109,19:31:128:0.148:2	./.
chr2	113155572	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,36:32:186:0.194:2	0/1:98,27:32:125:0.216:2	0/1:37,12:33:49:0.245:2	0/1:157,33:33:190:0.174:2	./.	0/1:133,56:32:189:0.296:2	0/1:111,15:32:126:0.119:2	0/1:160,28:31:188:0.149:2	0/1:93,91:32:184:0.495:2	./.	0/1:157,33:32:190:0.174:2
chr2	113155718	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,10:31:136:0.074:2	0/1:73,9:31:82:0.110:2	./.	0/1:97,32:31:129:0.248:2	./.	0/1:165,16:29:181:0.088:2
chr2	113155745	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,8:29:90:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113155817	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.
chr2	113159311	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,48:32:192:0.250:2	0/1:151,45:32:196:0.230:2	0/1:98,30:31:128:0.234:2	0/1:182,14:32:196:0.071:2	0/1:153,40:31:193:0.207:2	0/1:154,41:31:196:0.210:2	0/1:172,28:32:200:0.140:2	0/1:166,29:30:195:0.149:2	0/1:165,34:33:199:0.171:2	0/1:156,36:33:192:0.188:2	0/1:172,22:32:194:0.113:2
chr2	113161623	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:36:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr2	113161726	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,26:29:195:0.133:2	./.	./.	./.	./.	./.	./.
chr2	113179588	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,12:31:188:0.064:2	0/1:188,7:29:195:0.036:2	0/1:80,5:31:85:0.059:2	0/1:185,11:32:196:0.056:2	0/1:187,9:32:196:0.046:2	0/1:179,15:31:194:0.077:2	./.	0/1:187,9:32:198:0.046:2	0/1:191,5:33:196:0.026:2	0/1:182,7:33:190:0.037:2	0/1:182,8:31:190:0.042:2
chr2	113251880	rs61733584	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,22:31:79:0.278:2	./.	./.	./.	./.	./.	./.	./.
chr2	113258916	rs17846193	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:31:35:0.400:2	0/1:192,5:32:197:0.025:2	0/1:144,31:31:175:0.177:2	./.	0/1:141,42:32:183:0.230:2	0/1:140,37:32:177:0.209:2	0/1:126,48:33:174:0.276:2	0/1:135,44:31:179:0.246:2	0/1:114,39:32:154:0.255:2
chr2	113277949	rs62157538	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:29:26:0.500:2	./.	./.	./.	./.	0/1:99,89:30:188:0.473:2	0/1:96,97:30:193:0.503:2	0/1:101,93:29:194:0.479:2	0/1:99,89:29:189:0.473:2
chr2	113308516	rs2304555	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,151:33:152:0.993:2	0/1:1,94:32:95:0.989:2	0/1:14,16:33:30:0.533:2	0/1:1,177:33:178:0.994:2	0/1:80,58:32:138:0.420:2	0/1:0,195:32:195:1.00:2	0/1:1,171:33:172:0.994:2	0/1:97,98:33:195:0.503:2	0/1:116,79:34:195:0.405:2	0/1:110,85:32:195:0.436:2	0/1:90,101:33:192:0.529:2
chr2	113309473	rs1545133	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,107:32:109:0.982:2	0/1:1,54:32:55:0.982:2	0/1:8,8:31:16:0.500:2	0/1:0,114:31:114:1.00:2	0/1:60,33:31:93:0.355:2	0/1:2,80:31:82:0.976:2	0/1:51,33:31:84:0.393:2	0/1:82,65:31:147:0.442:2	0/1:67,54:32:121:0.446:2	0/1:49,55:32:104:0.529:2	0/1:77,58:31:136:0.430:2
chr2	113333029	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113344047	rs752992	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,116:31:117:0.991:2	0/1:0,80:32:80:1.00:2	0/1:5,12:33:17:0.706:2	0/1:1,144:32:145:0.993:2	0/1:0,108:31:108:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,138:32:139:1.00:2	0/1:79,86:32:165:0.521:2	0/1:99,64:32:163:0.393:2	0/1:67,54:32:121:0.446:2	0/1:72,54:32:126:0.429:2
chr2	113346413	rs3748024	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,15:31:16:0.938:2	0/1:0,13:31:13:1.00:2	0/1:2,4:33:6:0.667:2	0/1:13,20:31:33:0.606:2	0/1:27,20:31:47:0.426:2	0/1:1,39:31:40:0.975:2	0/1:38,26:32:64:0.406:2	./.	0/1:41,23:31:64:0.359:2	0/1:7,19:31:26:0.731:2	0/1:20,20:31:40:0.500:2
chr2	113346480	rs41278942	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.	0/1:23,19:32:42:0.452:2	0/1:29,22:32:51:0.431:2	./.	0/1:35,29:33:64:0.453:2	0/1:6,19:32:25:0.760:2	./.
chr2	113404708	rs4849091	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:30:14:1.00:2	./.	0/1:66,46:29:112:0.411:2	./.	0/1:3,107:30:110:0.973:2	0/1:2,139:30:141:0.986:2	0/1:1,105:31:106:0.991:2	./.	0/1:0,130:30:130:1.00:2
chr2	113404974	rs139798830	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,71:31:186:0.382:2	./.	./.	./.	./.	./.	./.
chr2	113410303	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.
chr2	113418774	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr2	113479614	rs13386452	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,30:31:30:1.00:2	0/1:4,5:31:9:0.556:2	0/1:0,55:30:55:1.00:2	0/1:53,45:30:98:0.459:2	0/1:0,61:30:61:1.00:2	./.	0/1:59,41:31:101:0.410:2	0/1:32,31:31:63:0.492:2	0/1:1,46:31:47:0.979:2	./.
chr2	113480320	rs61743392	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,15:32:24:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113480739	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:29:72:0.417:2	./.	./.	./.	./.	./.
chr2	113482779	rs4849116	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,133:33:133:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,77:33:77:1.00:2
chr2	113483037	rs13417956	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,57:30:105:0.543:2	./.	./.	./.
chr2	113484319	rs2138604	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,124:31:124:1.00:2	0/1:1,115:31:116:0.991:2	0/1:0,136:32:136:1.00:2	0/1:1,139:31:140:0.993:2	0/1:1,99:32:100:0.990:2	0/1:0,76:33:76:1.00:2	0/1:0,115:32:115:1.00:2
chr2	113487266	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,42:32:76:0.553:2	./.	./.	./.
chr2	113496434	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:31:66:0.530:2	./.
chr2	113498566	rs3811040	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:116,4:35:120:0.033:2	./.	0/1:3,11:33:14:0.786:2	./.	0/1:1,92:32:93:0.989:2	./.	0/1:67,73:33:140:0.521:2	./.	0/1:94,58:34:152:0.382:2	0/1:56,57:33:113:0.504:2	0/1:0,143:33:143:1.00:2
chr2	113513825	rs6731822	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,23:30:23:1.00:2	0/1:1,113:30:114:0.991:2	0/1:0,119:29:119:1.00:2	0/1:0,99:29:99:1.00:2	0/1:1,100:29:101:0.990:2	0/1:0,127:29:127:1.00:2	0/1:0,165:30:165:1.00:2	0/1:0,110:30:110:1.00:2	0/1:2,166:29:168:0.988:2
chr2	113520129	rs36093393	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,34:30:62:0.548:2	./.	./.	./.	0/1:42,45:32:89:0.517:2	./.	./.
chr2	113537223	rs17561	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,62:30:133:0.466:2	./.	0/1:72,66:31:138:0.478:2	0/1:99,75:30:174:0.431:2	0/1:87,96:32:183:0.525:2	./.	./.
chr2	113590390	rs1143634	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,4:33:162:0.025:2	0/1:96,75:31:171:0.439:2	./.	0/1:98,47:31:145:0.324:2	0/1:79,72:31:151:0.477:2	0/1:100,72:32:172:0.419:2	./.	./.
chr2	113671378	rs3811046	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:30:103:0.990:2	0/1:1,52:31:53:0.981:2	0/1:8,8:29:16:0.500:2	0/1:1,123:30:124:0.992:2	0/1:49,50:28:99:0.505:2	0/1:1,124:30:125:0.992:2	0/1:89,57:30:146:0.390:2	0/1:78,69:30:147:0.469:2	0/1:96,69:29:165:0.418:2	0/1:0,121:30:121:1.00:2	0/1:107,62:30:169:0.367:2
chr2	113671410	rs3811047	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,114:31:116:0.991:2	0/1:2,92:30:94:0.979:2	0/1:8,10:30:18:0.556:2	0/1:3,150:30:153:0.980:2	0/1:42,57:30:99:0.576:2	0/1:0,137:30:137:1.00:2	0/1:82,71:30:154:0.464:2	0/1:69,78:30:147:0.531:2	0/1:98,79:31:178:0.446:2	0/1:0,153:30:153:1.00:2	0/1:71,56:30:127:0.441:2
chr2	113674709	rs2708943	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:28:98:0.490:2
chr2	113674721	rs2723183	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:58,48:32:106:0.453:2
chr2	113675269	rs2723187	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:33:34:0.324:2
chr2	113676219	rs2708947	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,21:30:67:0.313:2
chr2	113676381	rs2723192	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:31:52:0.500:2
chr2	113763463	rs2305152	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,27:28:57:0.474:2	./.	0/1:51,43:29:94:0.457:2	0/1:56,66:29:122:0.541:2	./.	./.	0/1:62,64:30:126:0.508:2
chr2	113763575	rs895497	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:27:8:0.375:2	./.	0/1:0,79:31:79:1.00:2	0/1:55,39:30:94:0.415:2	0/1:0,57:30:57:1.00:2	0/1:64,44:29:108:0.407:2	0/1:0,91:31:91:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,105:30:106:1.00:2
chr2	113789316	rs2305150	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:32:16:0.250:2	./.	0/1:30,26:31:57:0.464:2	0/1:39,34:30:73:0.466:2	0/1:0,55:30:55:1.00:2	0/1:43,48:30:91:0.527:2	0/1:43,38:32:81:0.469:2	0/1:0,50:31:50:1.00:2	0/1:0,74:31:74:1.00:2
chr2	113831945	rs3811058	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,90:29:193:0.466:2	./.	0/1:55,48:30:103:0.466:2	./.
chr2	113832312	rs6761276	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:32:21:1.00:2	./.	0/1:101,69:32:170:0.406:2	0/1:95,99:31:194:0.510:2	0/1:4,159:32:163:0.975:2	./.	0/1:1,187:33:188:0.995:2	0/1:76,83:32:159:0.522:2	0/1:1,176:32:177:0.994:2
chr2	113832333	rs6743376	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	0/1:89,69:31:158:0.437:2	0/1:91,87:30:178:0.489:2	0/1:3,147:30:150:0.980:2	0/1:84,79:29:163:0.485:2	0/1:1,175:31:176:0.994:2	0/1:0,144:30:144:1.00:2	0/1:1,173:30:174:0.994:2
chr2	113875565	rs2234678	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	0/1:43,38:30:81:0.469:2	./.	./.	0/1:45,22:29:67:0.328:2	0/1:0,42:29:42:1.00:2	./.
chr2	113875584	rs2234679	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	0/1:46,37:32:83:0.446:2	./.	./.	0/1:39,23:33:62:0.371:2	0/1:0,42:33:42:1.00:2	./.
chr2	113875631	rs16065	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	./.	./.	0/1:23,16:33:39:0.410:2	0/1:2,25:32:27:0.926:2	./.
chr2	113877713	rs878972	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	0/1:33,26:32:59:0.441:2	./.	./.	0/1:42,20:33:62:0.323:2	0/1:0,56:32:57:1.00:2	./.
chr2	113887207	rs419598	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:28:14:0.214:2	0/1:114,70:31:184:0.380:2	./.	0/1:111,70:30:181:0.387:2	./.	./.	0/1:77,48:32:125:0.384:2	0/1:0,97:30:97:1.00:2	./.
chr2	113890304	rs315952	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,82:30:85:0.965:2	0/1:1,49:31:50:0.980:2	./.	0/1:2,99:30:101:0.980:2	0/1:74,58:30:132:0.439:2	0/1:63,35:31:98:0.357:2	./.	0/1:2,126:30:128:0.984:2	./.	./.	./.
chr2	113940681	rs3748914	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,18:30:18:1.00:2	0/1:6,3:30:9:0.333:2	0/1:17,27:30:44:0.614:2	./.	0/1:36,17:31:53:0.321:2	./.	0/1:23,29:28:52:0.558:2	./.	./.	./.
chr2	113940839	rs4849167	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,94:30:96:0.979:2	0/1:2,54:30:56:0.964:2	0/1:3,8:29:11:0.727:2	0/1:59,46:31:105:0.438:2	./.	0/1:61,49:29:110:0.445:2	./.	0/1:42,62:29:104:0.596:2	./.	./.	./.
chr2	113943470	rs2241976	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:31:82:1.00:2	0/1:1,50:31:51:0.980:2	0/1:5,10:32:15:0.667:2	0/1:73,72:31:145:0.497:2	./.	0/1:81,60:31:141:0.426:2	./.	0/1:84,82:31:166:0.494:2	./.	./.	./.
chr2	113950880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113951239	rs369791634	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,75:33:139:0.540:2	./.	./.
chr2	113956371	rs2276561	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.
chr2	113976146	rs368201100	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:28:22:0.500:2	0/1:8,7:29:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:24:32:0.387:2	./.
chr2	114035923	rs1867763	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,7:32:15:0.467:2	./.	./.	0/1:22,15:31:37:0.405:2	0/1:19,3:31:22:0.136:2	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.	./.
chr2	114199006	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	114201417	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,31:32:181:0.171:2	0/1:169,29:30:198:0.146:2	0/1:173,11:30:184:0.060:2	0/1:180,15:32:195:0.077:2	0/1:180,14:31:194:0.072:2	0/1:164,29:31:193:0.150:2	./.	0/1:170,27:32:197:0.137:2	./.	./.	0/1:178,11:30:189:0.058:2
chr2	114202622	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:116,5:32:121:0.041:2	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	0/1:159,8:32:168:0.048:2	0/1:184,4:35:188:0.021:2	./.	./.
chr2	114252745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.
chr2	114256840	rs147906017	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,58:32:129:0.453:2	./.	./.	./.
chr2	114256859	rs189095552	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,34:31:116:0.296:2	./.	./.	./.
chr2	114256978	rs2757970	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,11:32:133:0.083:2	./.	./.	./.
chr2	114257073	rs374836136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.
chr2	114257079	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.
chr2	114257085	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:32:72:0.069:2	./.	./.
chr2	114257095	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2	0/1:44,5:29:49:0.102:2	./.	./.	./.
chr2	114257162	rs201655302	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,15:32:92:0.165:2	0/1:62,21:32:83:0.253:2	./.	0/1:128,24:33:152:0.158:2	0/1:86,25:31:111:0.225:2	0/1:132,27:32:159:0.170:2	0/1:78,20:33:98:0.204:2	0/1:106,9:34:115:0.078:2	0/1:111,27:33:138:0.196:2	0/1:83,6:33:89:0.067:2	0/1:63,7:34:70:0.100:2
chr2	114257266	rs142136016	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:128,18:32:146:0.123:2	0/1:97,25:30:122:0.205:2	./.	./.	0/1:77,26:25:103:0.252:2	0/1:110,22:25:132:0.167:2	0/1:95,32:27:127:0.252:2	./.	0/1:92,18:29:110:0.164:2	./.	./.
chr2	114257296	rs199845792	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,13:27:74:0.176:2	0/1:65,18:29:83:0.217:2	./.	0/1:61,41:24:103:0.402:2	0/1:78,22:24:100:0.220:2	0/1:100,17:27:117:0.145:2	0/1:101,15:26:116:0.129:2	0/1:54,30:25:85:0.357:2	0/1:86,12:25:98:0.122:2	./.	./.
chr2	114257319	rs141841883	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	0/1:85,51:31:136:0.375:2	./.	./.	./.	0/1:78,43:32:121:0.355:2	./.	./.
chr2	114257354	rs202243377	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,4:33:70:0.058:2	0/1:38,6:31:44:0.136:2	./.	0/1:68,10:33:78:0.128:2	0/1:61,4:27:65:0.062:2	0/1:68,8:33:76:0.105:2	0/1:45,4:32:49:0.082:2	0/1:45,9:33:54:0.167:2	0/1:71,4:34:75:0.053:2	./.	./.
chr2	114257590	rs200085244	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.
chr2	114257595	rs199633498	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:26:6:0.500:2	./.	./.	./.
chr2	114257660	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:29:12:0.333:2	0/1:10,4:29:14:0.286:2	./.	./.	./.
chr2	114257696	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,5:28:26:0.192:2	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	0/1:12,5:29:17:0.294:2	0/1:13,5:26:18:0.278:2	./.	./.	./.
chr2	114257797	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,5:32:40:0.125:2	./.	./.	./.	./.	0/1:66,6:32:72:0.083:2	./.	./.	0/1:47,5:29:52:0.096:2	0/1:62,7:32:70:0.101:2
chr2	114257820	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,12:30:75:0.160:2	0/1:33,10:32:43:0.233:2	0/1:13,4:31:17:0.235:2	0/1:100,12:30:112:0.107:2	0/1:62,23:30:85:0.271:2	0/1:90,15:30:105:0.143:2	0/1:63,11:31:74:0.149:2	0/1:72,11:30:83:0.133:2	0/1:61,4:31:65:0.062:2	0/1:50,11:30:61:0.180:2	0/1:76,15:31:91:0.165:2
chr2	114257861	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,10:29:155:0.065:2	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.
chr2	114257891	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,6:31:184:0.033:2	0/1:164,20:30:184:0.109:2	0/1:171,7:32:178:0.039:2	0/1:173,6:32:179:0.034:2	0/1:145,11:32:156:0.071:2	./.	0/1:124,5:33:129:0.039:2	./.
chr2	114257907	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,4:32:182:0.022:2	0/1:171,13:30:184:0.071:2	0/1:163,6:31:169:0.036:2	0/1:171,5:33:176:0.028:2	0/1:146,8:33:154:0.052:2	./.	./.	./.
chr2	114257936	rs145615058	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,11:29:137:0.080:2	0/1:66,5:31:71:0.070:2	./.	0/1:133,6:28:139:0.043:2	0/1:115,15:27:132:0.115:2	0/1:123,7:27:130:0.054:2	0/1:133,10:29:143:0.070:2	0/1:120,8:27:128:0.063:2	0/1:129,6:31:135:0.044:2	0/1:125,5:30:130:0.038:2	0/1:120,8:26:128:0.063:2
chr2	114258017	.	G	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,3:30:26:0.115:2	./.	./.	./.	0/1:30,5:30:35:0.143:2	0/1:35,5:32:40:0.125:2	0/1:17,5:31:22:0.227:2	./.	./.	./.	0/1:14,5:30:19:0.263:2
chr2	114258032	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:31:49:0.082:2	0/1:37,4:30:42:0.098:2	0/1:39,4:33:43:0.093:2	./.	./.	./.	./.	./.
chr2	114258043	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:26:46:0.087:2	./.	./.	./.	./.	./.	./.
chr2	114258227	rs143668791	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,64:29:139:0.460:2	./.	./.	./.	./.	./.	./.
chr2	114258273	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:27:197:0.030:2
chr2	114258324	rs11688758	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:189,6:30:195:0.031:2	0/1:189,6:33:195:0.031:2	./.	./.	0/1:180,6:30:186:0.032:2	0/1:188,6:30:194:0.031:2	./.	0/1:183,7:31:190:0.037:2	0/1:192,4:33:196:0.020:2	0/1:187,7:31:196:0.036:2	0/1:185,10:32:195:0.051:2
chr2	114258370	rs116543208	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,36:32:63:0.571:2	./.	0/1:91,95:31:186:0.511:2	./.	./.	./.	./.	./.	./.
chr2	114258373	rs151315373	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,5:31:191:0.026:2	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2
chr2	114258384	rs2144270	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:29:58:1.00:2	./.	0/1:80,105:28:185:0.568:2	0/1:2,178:28:181:0.989:2	0/1:178,7:27:185:0.038:2	0/1:184,6:26:191:0.032:2	0/1:1,174:30:175:0.994:2	0/1:0,175:28:175:1.00:2	./.
chr2	114258390	.	T	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,5:33:183:0.027:2	./.	./.	0/1:176,9:32:185:0.049:2	0/1:182,7:31:189:0.037:2	0/1:181,13:33:194:0.067:2	0/1:165,16:32:181:0.088:2	0/1:177,12:33:189:0.063:2	0/1:174,18:32:193:0.094:2	0/1:172,15:31:188:0.080:2	0/1:168,5:34:173:0.029:2
chr2	114258394	rs6714080	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:162,16:29:178:0.090:2	0/1:187,6:32:193:0.031:2	./.	0/1:159,21:32:180:0.117:2	0/1:172,15:30:187:0.080:2	0/1:168,25:32:193:0.130:2	0/1:156,27:31:183:0.148:2	0/1:164,25:32:189:0.132:2	0/1:170,23:31:193:0.119:2	0/1:152,30:32:183:0.165:2	0/1:160,12:32:172:0.070:2
chr2	114258536	rs3982977	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,18:31:196:0.092:2	0/1:164,18:32:182:0.099:2	0/1:68,4:30:72:0.056:2	0/1:182,15:31:198:0.076:2	0/1:175,13:31:188:0.069:2	0/1:178,20:30:198:0.101:2	0/1:176,16:31:192:0.083:2	0/1:165,15:31:180:0.083:2	0/1:184,13:31:197:0.066:2	0/1:182,16:31:198:0.081:2	0/1:183,14:32:197:0.071:2
chr2	114258645	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,10:33:181:0.055:2	./.	./.	./.
chr2	114340615	rs2441621	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,19:33:180:0.106:2	0/1:104,12:32:116:0.103:2	0/1:12,5:30:17:0.294:2	0/1:159,21:32:180:0.117:2	0/1:47,11:33:58:0.190:2	0/1:136,16:31:152:0.105:2	0/1:71,9:33:80:0.113:2	0/1:128,10:31:138:0.072:2	0/1:81,16:33:97:0.165:2	0/1:163,16:32:179:0.089:2	0/1:123,20:32:143:0.140:2
chr2	114340628	rs7589328	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:27:12:0.250:2	0/1:171,15:33:186:0.081:2	./.	./.	./.	./.	./.	./.	0/1:135,16:33:151:0.106:2
chr2	114340631	rs74625964	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,15:32:164:0.091:2	./.	./.	./.	0/1:171,16:33:187:0.086:2	./.
chr2	114340663	rs6542147	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,70:31:163:0.432:2	0/1:74,46:32:120:0.383:2	./.	0/1:79,98:32:177:0.554:2	0/1:35,20:31:55:0.364:2	0/1:104,56:31:160:0.350:2	0/1:55,22:31:77:0.286:2	0/1:91,43:30:134:0.321:2	0/1:86,19:32:105:0.181:2	0/1:92,68:31:160:0.425:2	0/1:119,28:32:147:0.190:2
chr2	114391721	rs793079	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:51,29:31:80:0.363:2	0/1:33,18:31:51:0.353:2	./.	0/1:62,37:30:100:0.374:2	./.	./.	./.	./.	./.	./.	0/1:48,17:31:65:0.262:2
chr2	114392624	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.	./.	./.	./.	./.	./.
chr2	114392716	rs146907164	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,28:31:82:0.341:2	0/1:38,20:31:58:0.345:2	./.	0/1:77,60:31:137:0.438:2	./.	./.	./.	0/1:75,60:31:135:0.444:2	0/1:59,39:31:98:0.398:2	0/1:4,100:31:105:0.962:2	0/1:49,48:31:97:0.495:2
chr2	114399448	rs199586694	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,46:29:193:0.238:2	./.	./.	./.	./.	./.
chr2	115822349	rs114821649	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,91:33:185:0.492:2	./.	./.
chr2	116447277	rs35766316	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,28:31:74:0.378:2	./.	./.	./.	0/1:31,35:32:66:0.530:2	./.
chr2	116503671	rs36044503	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	./.	0/1:26,14:32:40:0.350:2	./.
chr2	116510817	rs2053724	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,58:33:114:0.509:2	0/1:52,24:32:76:0.316:2	./.	0/1:82,67:32:149:0.450:2	0/1:52,42:32:94:0.447:2	./.	0/1:0,76:31:76:1.00:2	0/1:104,61:32:165:0.370:2	0/1:0,121:33:121:1.00:2	./.	./.
chr2	116525960	rs1446495	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,117:32:118:0.992:2	0/1:0,60:32:60:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,144:32:144:1.00:2	0/1:1,146:32:147:0.993:2	0/1:0,99:32:99:1.00:2	0/1:0,156:32:156:1.00:2
chr2	116539911	rs75830748	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:27:46:0.500:2	./.	./.	./.	0/1:23,18:29:41:0.439:2	./.
chr2	118572361	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,4:24:32:0.129:2	./.	./.	0/1:67,10:14:77:0.130:2	./.	./.	0/1:78,13:13:91:0.143:2	./.	./.	./.	0/1:45,7:16:52:0.135:2
chr2	118575215	rs1052637	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.	0/1:30,16:33:46:0.348:2	0/1:0,64:33:65:1.00:2	0/1:24,21:32:45:0.467:2	./.	0/1:1,72:34:73:0.986:2	./.	0/1:49,33:33:82:0.402:2
chr2	118582620	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	118583100	rs1052639	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,43:33:88:0.489:2	0/1:32,25:32:57:0.439:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	118583849	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,10:32:75:0.133:2	./.	./.	./.	./.
chr2	118583940	rs2303348	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,18:32:37:0.486:2	0/1:4,16:32:20:0.800:2	./.	0/1:31,15:31:46:0.326:2	0/1:24,15:31:39:0.385:2	./.	0/1:21,13:31:34:0.382:2	./.	./.	0/1:1,28:31:29:0.966:2	0/1:25,21:32:46:0.457:2
chr2	118677916	rs35891278	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,30:29:52:0.577:2	./.	./.	./.	0/1:0,39:30:39:1.00:2	./.	./.	0/1:17,9:28:26:0.346:2
chr2	118677932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.
chr2	118731573	rs748767	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,10:31:26:0.385:2	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	0/1:21,22:30:43:0.512:2	./.	./.	0/1:21,16:31:37:0.432:2	0/1:20,10:31:31:0.333:2
chr2	118732831	rs17512204	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:32:45:0.533:2	0/1:14,14:32:29:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:14,25:31:39:0.641:2	./.
chr2	118743630	rs33975708	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,54:32:124:0.435:2	./.	./.	./.	0/1:0,165:33:165:1.00:2	./.	./.	0/1:74,58:33:132:0.439:2
chr2	118753097	rs17584619	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	0/1:15,10:32:25:0.400:2	./.	./.	./.	./.	0/1:12,11:32:23:0.478:2	./.	./.	./.	0/1:38,36:32:74:0.486:2
chr2	118771566	rs11545372	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:30:15:0.600:2	0/1:33,37:30:70:0.529:2	0/1:26,24:29:50:0.480:2	0/1:42,32:30:74:0.432:2	0/1:21,20:31:41:0.488:2	0/1:1,69:29:70:0.986:2	0/1:0,61:31:61:1.00:2	./.	0/1:18,24:30:42:0.571:2
chr2	118860873	rs35551800	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:30:101:0.505:2	./.
chr2	119748143	rs116412702	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,31:28:64:0.484:2	0/1:13,8:26:21:0.381:2	./.	./.	0/1:9,10:27:19:0.526:2	./.	./.	0/1:18,14:27:32:0.438:2	./.	./.	0/1:24,18:29:42:0.429:2
chr2	119748152	rs199736481	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:24:18:0.333:2	./.	0/1:35,7:15:42:0.167:2	0/1:17,6:23:23:0.261:2	./.	0/1:50,6:20:56:0.107:2	./.	./.
chr2	119751997	rs34536804	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,60:33:109:0.550:2	./.	./.	./.
chr2	119915249	rs7556873	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,47:31:96:0.490:2	0/1:38,21:31:59:0.356:2	0/1:3,11:33:14:0.786:2	0/1:3,114:32:117:0.974:2	0/1:105,83:31:188:0.441:2	0/1:82,58:32:140:0.414:2	./.	0/1:2,166:32:168:0.988:2	0/1:0,119:33:119:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,87:31:88:1.00:2
chr2	119988565	rs838100	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,12:29:45:0.267:2	0/1:23,12:31:35:0.343:2	./.	0/1:43,36:30:79:0.456:2	0/1:48,51:30:99:0.515:2	./.	0/1:0,102:30:102:1.00:2	0/1:41,37:30:78:0.474:2	0/1:31,27:31:58:0.466:2	0/1:32,24:30:57:0.429:2	./.
chr2	120005312	rs17013371	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:30:49:0.551:2	./.	./.	./.	./.
chr2	120005569	rs17805141	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120005751	rs199836424	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,46:32:76:0.605:2	./.
chr2	120012412	rs41279770	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,34:29:94:0.362:2	./.	./.	0/1:41,42:31:83:0.506:2	./.	0/1:0,81:30:81:1.00:2
chr2	120015164	rs111712266	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,41:30:117:0.350:2	./.	./.	0/1:67,62:30:129:0.481:2	./.	0/1:0,114:29:114:1.00:2
chr2	120015197	rs6542517	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,93:32:166:0.560:2	./.	./.	./.	./.
chr2	120060082	rs1052500	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,39:33:76:0.513:2	0/1:33,34:33:67:0.507:2	0/1:2,8:32:10:0.800:2	0/1:56,48:32:104:0.462:2	0/1:32,36:33:68:0.529:2	0/1:47,30:32:77:0.390:2	0/1:34,32:33:66:0.485:2	0/1:2,99:33:101:0.980:2	0/1:51,49:33:100:0.490:2	0/1:48,46:33:94:0.489:2	./.
chr2	120060106	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.
chr2	120078778	rs1132267	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,54:33:142:0.380:2	0/1:47,54:32:101:0.535:2	0/1:10,17:32:27:0.630:2	0/1:104,91:33:195:0.467:2	0/1:62,42:32:104:0.404:2	0/1:113,82:32:195:0.421:2	0/1:56,43:33:99:0.434:2	0/1:5,179:32:185:0.973:2	0/1:114,83:33:197:0.421:2	0/1:70,74:32:144:0.514:2	./.
chr2	120197784	rs145773754	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,59:31:117:0.504:2	./.	./.	./.	./.	./.
chr2	120199140	rs1126839	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,10:30:33:0.303:2	0/1:13,7:29:20:0.350:2	0/1:0,9:31:9:1.00:2	0/1:0,53:30:53:1.00:2	0/1:29,17:29:46:0.370:2	0/1:0,35:29:35:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,37:29:37:1.00:2	0/1:18,24:29:42:0.571:2
chr2	120219546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.
chr2	120362294	rs61741340	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:32:27:0.259:2	./.	./.
chr2	120366070	rs34202604	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:19:23:0.217:2
chr2	120369300	rs10864986	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,104:28:104:1.00:2	0/1:0,103:29:103:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,132:28:132:1.00:2
chr2	120388412	rs2272058	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,111:31:111:1.00:2
chr2	120409616	rs11686014	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:31:95:0.505:2	0/1:0,42:32:42:1.00:2	./.	./.	./.	0/1:51,39:32:90:0.433:2
chr2	120413984	rs116625089	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:33:43:0.512:2	./.	./.
chr2	120413986	rs186291259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,22:28:45:0.489:2	./.	./.	./.	./.	./.	./.
chr2	120438515	rs11684353	G	C,T	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32:120:0.567:2	0/1:32:103:1.00:2	./.	./.	0/2:31:96:0.563:2	0/1:32:114:0.509:2
chr2	120438523	rs13011768	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,7:30:7:1.00:2	0/1:1,97:32:98:0.990:2	0/1:1,102:32:103:0.990:2	0/1:70,52:31:122:0.426:2	./.	0/1:1,95:31:96:0.990:2	0/1:0,66:32:66:1.00:2	0/1:0,82:32:82:1.00:2	0/1:56,53:32:109:0.486:2
chr2	120438696	rs939777	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,75:32:75:1.00:2	0/1:1,78:33:79:0.987:2	0/1:0,90:33:90:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,73:33:73:1.00:2
chr2	120439230	rs1983406	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,53:33:54:0.981:2	0/1:2,45:33:48:0.957:2	0/1:0,6:30:6:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,61:32:61:1.00:2	0/1:42,38:33:80:0.475:2	./.	0/1:2,60:32:62:0.968:2	0/1:0,66:34:66:1.00:2	0/1:0,50:32:50:1.00:2	0/1:37,25:33:62:0.403:2
chr2	120439459	rs4849797	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:33:57:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,29:31:29:1.00:2	0/1:34,36:31:70:0.514:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,51:32:51:1.00:2	0/1:33,44:32:77:0.571:2
chr2	120635074	rs61737537	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,25:33:40:0.625:2	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120704166	rs2289580	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,33:32:105:0.314:2	0/1:32,12:32:44:0.273:2	./.	0/1:3,55:32:58:0.948:2	0/1:37,20:30:57:0.351:2	0/1:0,53:30:53:1.00:2	0/1:3,30:31:33:0.909:2	0/1:0,43:31:43:1.00:2	0/1:0,67:32:67:1.00:2	0/1:51,22:32:73:0.301:2	0/1:1,75:31:76:0.987:2
chr2	120714506	rs72840427	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:32:68:0.426:2	0/1:14,7:31:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120734635	rs3189128	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,35:32:70:0.507:2	0/1:31,22:32:53:0.415:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120776747	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120830815	rs3738970	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,113:32:113:1.00:2	0/1:46,16:31:62:0.258:2	0/1:0,69:32:69:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,91:33:91:1.00:2	0/1:33,46:33:80:0.582:2	0/1:1,99:32:100:0.990:2
chr2	120831687	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.	./.
chr2	120885310	rs1034489	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,28:32:81:0.346:2	0/1:20,20:32:40:0.500:2	0/1:9,8:30:17:0.471:2	0/1:0,101:32:101:1.00:2	0/1:47,48:31:95:0.505:2	0/1:2,92:30:94:0.979:2	0/1:0,74:32:74:1.00:2	0/1:0,112:31:112:1.00:2	0/1:62,45:32:107:0.421:2	0/1:41,21:32:62:0.339:2	0/1:1,110:32:111:0.991:2
chr2	121036333	rs11545293	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,23:31:51:0.460:2	0/1:17,13:30:30:0.433:2	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	121106850	rs4328642	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,72:32:156:0.462:2	./.	./.
chr2	121554927	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.
chr2	121726447	rs2592595	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,6:29:6:1.00:2	0/1:32,16:32:48:0.333:2	0/1:0,66:32:66:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,33:33:33:1.00:2	0/1:17,17:32:34:0.500:2	0/1:0,22:31:22:1.00:2
chr2	121746956	rs3738880	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,21:33:40:0.525:2	0/1:14,12:31:26:0.462:2	0/1:0,8:30:8:1.00:2	0/1:0,47:31:47:1.00:2	./.	0/1:0,46:31:46:1.00:2	0/1:3,56:31:59:0.949:2	0/1:28,16:30:44:0.364:2	0/1:0,31:33:31:1.00:2	0/1:1,46:31:47:0.979:2	0/1:28,14:33:42:0.333:2
chr2	121747406	rs12711538	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,40:31:78:0.513:2	0/1:27,20:32:47:0.426:2	0/1:0,20:31:20:1.00:2	0/1:0,125:31:125:1.00:2	./.	0/1:0,93:31:93:1.00:2	0/1:1,136:31:137:0.993:2	0/1:87,44:32:131:0.336:2	0/1:0,111:32:111:1.00:2	0/1:1,71:32:72:0.986:2	0/1:41,37:32:78:0.474:2
chr2	121747429	rs10167980	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,36:29:77:0.468:2	0/1:26,14:29:40:0.350:2	0/1:0,24:29:24:1.00:2	0/1:0,110:30:110:1.00:2	./.	0/1:1,91:30:92:0.989:2	0/1:1,130:30:131:0.992:2	0/1:90,43:30:133:0.323:2	0/1:0,112:30:112:1.00:2	0/1:1,80:30:81:0.988:2	0/1:42,35:30:77:0.455:2
chr2	121981950	rs11890430	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,23:29:57:0.404:2	0/1:27,15:29:42:0.357:2	./.	./.	./.	0/1:41,36:29:77:0.468:2	0/1:47,38:30:85:0.447:2	0/1:50,41:30:91:0.451:2	./.	./.	0/1:42,17:29:59:0.288:2
chr2	121989489	rs2304667	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,44:30:77:0.571:2	0/1:37,27:31:64:0.422:2	0/1:0,25:31:25:1.00:2	0/1:84,77:31:161:0.478:2	0/1:109,72:31:181:0.398:2	0/1:77,77:31:154:0.500:2	0/1:103,89:30:192:0.464:2	./.	0/1:85,70:32:155:0.452:2	0/1:55,63:31:118:0.534:2	./.
chr2	122006620	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:32:63:0.429:2	./.
chr2	122139854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	./.	./.
chr2	122165159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	122184950	rs72967386	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,64:31:166:0.386:2	0/1:107,87:31:194:0.448:2	./.	./.	./.	./.	./.
chr2	122216419	rs2304560	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,30:32:51:0.588:2	0/1:5,15:31:20:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	122260814	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:33:98:0.439:2
chr2	122484976	rs1056014	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,43:31:97:0.443:2	0/1:71,77:31:148:0.520:2	./.	./.	./.	./.	./.
chr2	122489522	rs182341488	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:34:55:0.055:2	./.	./.
chr2	125192068	rs1425745	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:30:125:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,135:30:136:0.993:2	0/1:0,83:30:83:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,90:30:90:1.00:2	0/1:81,70:30:151:0.464:2	0/1:1,98:31:99:0.990:2	0/1:2,108:30:110:0.982:2	0/1:0,173:29:173:1.00:2
chr2	125281910	rs17727261	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,41:33:86:0.477:2
chr2	125547511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:34:77:0.052:2	./.	./.
chr2	127447841	rs56070638	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.
chr2	127453664	rs1050967	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:27:20:0.400:2	0/1:77,70:28:147:0.476:2	0/1:0,179:27:179:1.00:2	./.	0/1:0,177:28:177:1.00:2	0/1:77,92:29:169:0.544:2	0/1:2,151:29:153:0.987:2	0/1:72,67:28:139:0.482:2	./.
chr2	127811042	rs76414720	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,51:32:111:0.459:2	0/1:40,32:31:72:0.444:2	0/1:4,7:31:11:0.636:2	./.	0/1:109,72:32:182:0.398:2	./.	./.	./.	./.	./.	./.
chr2	127816617	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	127816628	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.
chr2	127816632	rs2276579	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:32:15:0.533:2	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	127816695	rs2228955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:29:33:0.424:2	./.
chr2	127819777	rs61748157	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,5:31:22:0.227:2	0/1:10,7:30:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	127821207	rs1137845	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,57:32:113:0.504:2	./.
chr2	127826533	rs1060743	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,40:29:103:0.388:2	0/1:39,17:28:56:0.304:2	./.	./.	0/1:0,86:29:87:1.00:2	./.	0/1:109,67:29:176:0.381:2	./.	./.	0/1:75,55:29:130:0.423:2	./.
chr2	127953054	rs7568070	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,41:29:95:0.432:2	0/1:35,29:29:64:0.453:2	0/1:0,17:29:17:1.00:2	./.	0/1:75,70:29:145:0.483:2	0/1:70,50:28:120:0.417:2	./.	0/1:82,82:29:164:0.500:2	./.	./.	0/1:66,45:29:111:0.405:2
chr2	128016878	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:89:0.045:2	./.	./.	./.	./.
chr2	128051206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.
chr2	128051697	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,16:28:22:0.727:2	./.	./.	./.	./.	./.
chr2	128079806	rs3732209	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:29:29:0.379:2	0/1:10,5:31:15:0.333:2	./.	./.	0/1:11,3:31:14:0.214:2	0/1:13,21:31:34:0.618:2	./.	0/1:17,10:31:27:0.370:2	./.	0/1:17,16:32:33:0.485:2	./.
chr2	128096571	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr2	128180872	rs5936	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,16:33:55:0.291:2	0/1:22,22:32:44:0.500:2	./.	0/1:0,108:32:108:1.00:2	0/1:8,168:31:176:0.955:2	0/1:1,120:32:121:0.992:2	./.	0/1:72,62:32:134:0.463:2	0/1:0,99:33:99:1.00:2	0/1:38,46:32:84:0.548:2	0/1:48,46:32:94:0.489:2
chr2	128183705	rs371071104	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,61:30:143:0.430:2
chr2	128184770	rs5937	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:27:16:0.500:2	0/1:7,9:27:16:0.563:2	./.	./.	0/1:13,9:26:22:0.409:2	0/1:17,10:28:27:0.370:2	./.	0/1:11,12:27:23:0.522:2	./.	0/1:6,4:28:10:0.400:2	0/1:5,13:26:18:0.722:2
chr2	128185941	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.
chr2	128264246	rs2078028	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:10,8:31:18:0.444:2	0/1:8,8:33:16:0.500:2
chr2	128321770	rs2404991	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,145:32:145:1.00:2	0/1:62,99:31:161:0.615:2	0/1:3,156:32:159:0.981:2	./.	0/1:5,179:32:184:0.973:2	0/1:1,143:33:144:0.993:2	./.	./.
chr2	128321776	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.	./.	./.	./.
chr2	128342446	rs373903901	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2
chr2	128367092	rs777432	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,50:32:53:0.943:2	0/1:2,33:32:35:0.943:2	0/1:2,5:32:7:0.714:2	./.	0/1:38,24:30:62:0.387:2	./.	0/1:35,36:32:71:0.507:2	0/1:50,42:31:92:0.457:2	./.	./.	0/1:63,25:32:89:0.284:2
chr2	128379563	rs61744148	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,24:31:65:0.369:2	./.	./.	./.	./.	./.	0/1:55,25:33:80:0.313:2
chr2	128381808	rs13422424	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,19:31:42:0.452:2	./.	0/1:35,16:31:51:0.314:2	./.	./.	0/1:24,18:32:42:0.429:2	0/1:0,38:31:38:1.00:2
chr2	128384761	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:31:94:0.457:2	./.	./.	./.	./.	./.
chr2	128388437	rs138651379	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	128388790	rs13025791	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,42:32:42:1.00:2	0/1:0,23:32:23:1.00:2	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:37,21:29:58:0.362:2	0/1:29,36:31:65:0.554:2	./.	./.	./.
chr2	128388862	rs13025959	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,64:31:64:1.00:2	0/1:0,41:31:41:1.00:2	0/1:5,5:31:10:0.500:2	./.	./.	./.	0/1:30,28:31:58:0.483:2	0/1:52,29:31:81:0.358:2	./.	./.	./.
chr2	128392242	rs199726409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:31:47:0.511:2	./.	./.
chr2	128393800	rs2255161	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,55:30:55:1.00:2	0/1:0,44:30:44:1.00:2	0/1:6,8:29:14:0.571:2	./.	./.	./.	0/1:69,63:30:132:0.477:2	0/1:44,69:30:113:0.611:2	./.	./.	./.
chr2	128394955	rs11686946	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,60:31:61:0.984:2	0/1:0,33:30:33:1.00:2	./.	./.	./.	./.	0/1:69,27:31:96:0.281:2	0/1:62,39:31:101:0.386:2	./.	./.	./.
chr2	128397728	rs115961120	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,48:27:109:0.440:2	./.	./.	./.	./.	./.	0/1:34,29:27:63:0.460:2
chr2	128400608	rs4662751	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,9:32:19:0.474:2	0/1:55,38:31:93:0.409:2	./.	0/1:2,93:30:95:0.979:2	0/1:32,44:32:76:0.579:2	./.	0/1:3,96:32:99:0.970:2	./.	./.
chr2	128408452	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.
chr2	128409337	rs35201354	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,13:28:34:0.382:2	0/1:11,7:31:18:0.389:2	0/1:3,3:32:6:0.500:2	./.	0/1:17,17:32:34:0.500:2	./.	./.	0/1:26,35:30:61:0.574:2	./.	./.	./.
chr2	128409338	rs34415489	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,13:31:34:0.382:2	0/1:11,7:31:18:0.389:2	0/1:3,3:30:6:0.500:2	./.	0/1:17,17:31:34:0.500:2	./.	./.	0/1:26,35:30:61:0.574:2	./.	./.	./.
chr2	128409419	rs13021001	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,37:29:61:0.607:2	0/1:33,23:29:56:0.411:2	0/1:42,27:30:69:0.391:2	./.	0/1:20,9:27:29:0.310:2	0/1:24,16:29:40:0.400:2
chr2	128409905	rs1047760	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,34:28:73:0.466:2	0/1:30,15:29:45:0.333:2	0/1:3,6:30:9:0.667:2	0/1:0,87:29:87:1.00:2	0/1:72,49:28:121:0.405:2	0/1:58,30:28:88:0.341:2	0/1:102,83:29:185:0.449:2	0/1:78,52:30:130:0.400:2	0/1:0,89:29:89:1.00:2	0/1:69,37:30:106:0.349:2	0/1:39,43:28:82:0.524:2
chr2	128410117	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr2	128460866	rs143249179	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,24:34:63:0.381:2	./.	./.
chr2	128460956	rs800859	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,61:32:61:1.00:2
chr2	128461248	rs17533356	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.
chr2	128461524	rs7584783	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:29:33:0.364:2	0/1:18,4:34:22:0.182:2	./.	./.	0/1:24,8:31:32:0.250:2	0/1:17,12:32:29:0.414:2
chr2	128461556	rs7575478	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:29:35:0.343:2	0/1:17,6:32:23:0.261:2	./.	./.	0/1:23,10:31:33:0.303:2	0/1:19,10:32:29:0.345:2
chr2	128464116	rs34550770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:31:25:0.520:2	./.	./.	./.	./.
chr2	128477084	rs61730415	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,24:31:36:0.667:2	0/1:9,7:30:16:0.438:2	./.	./.	0/1:28,18:33:46:0.391:2	./.	./.	0/1:35,17:33:53:0.327:2	./.	./.	./.
chr2	128495645	rs6754215	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,19:33:33:0.576:2	0/1:20,13:33:33:0.394:2	./.	./.	0/1:25,18:32:43:0.419:2	0/1:28,12:33:41:0.300:2	0/1:38,30:33:68:0.441:2	0/1:25,17:33:42:0.405:2	0/1:31,33:34:64:0.516:2	0/1:28,26:33:54:0.481:2	0/1:29,25:33:54:0.463:2
chr2	128522207	rs17534123	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:84,69:33:153:0.451:2	0/1:63,47:32:110:0.427:2	./.	./.	0/1:107,78:32:186:0.422:2	./.	./.	0/1:105,79:33:184:0.429:2	./.	./.	./.
chr2	128522383	rs11557685	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:85,51:30:136:0.375:2	0/1:41,18:30:59:0.305:2	./.	./.	0/1:46,41:29:87:0.471:2	./.	./.	0/1:73,83:30:156:0.532:2	./.	./.	./.
chr2	128608184	rs11556864	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,39:32:104:0.375:2	./.	./.	./.	./.
chr2	128610648	rs10210695	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,39:29:95:0.411:2	0/1:31,23:29:54:0.426:2	./.	./.	0/1:44,33:30:77:0.429:2	./.	./.	0/1:38,50:28:88:0.568:2	./.	0/1:40,23:30:63:0.365:2	./.
chr2	128757995	rs17015864	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,63:29:135:0.467:2	./.	./.	0/1:73,66:28:139:0.475:2	./.	0/1:68,65:29:133:0.489:2	0/1:0,89:28:89:1.00:2	0/1:62,47:27:109:0.431:2
chr2	128772486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:164:0.024:2
chr2	128849114	rs4476299	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,76:32:76:1.00:2	0/1:1,64:32:65:0.985:2	0/1:1,84:31:85:0.988:2	0/1:0,71:32:71:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,49:32:49:1.00:2
chr2	128870808	rs4662775	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:89:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,185:33:185:1.00:2
chr2	128878014	rs4662594	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,51:33:51:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,49:32:49:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,43:32:44:0.977:2	0/1:0,45:34:45:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,46:33:46:1.00:2
chr2	128903453	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.
chr2	128934400	rs2290111	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,52:31:115:0.452:2	0/1:24,42:29:66:0.636:2	0/1:6,5:28:11:0.455:2	0/1:0,103:29:103:1.00:2	./.	0/1:65,51:29:116:0.440:2	./.	0/1:70,70:30:140:0.500:2	0/1:76,72:30:148:0.486:2	0/1:0,106:30:106:1.00:2	0/1:0,155:29:155:1.00:2
chr2	128939799	rs17178720	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:32:131:0.427:2	./.	0/1:80,44:32:124:0.355:2	0/1:68,68:31:136:0.500:2
chr2	128939817	rs1699	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:61,42:32:103:0.408:2	0/1:31,22:32:53:0.415:2	0/1:9,10:31:19:0.526:2	./.	./.	0/1:72,34:30:106:0.321:2	./.	0/1:68,49:31:117:0.419:2	./.	0/1:78,39:31:117:0.333:2	0/1:62,65:31:127:0.512:2
chr2	129025814	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:33:29:0.103:2	./.	./.	./.	./.	./.
chr2	129025860	rs147436494	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,11:30:101:0.109:2	0/1:54,12:29:66:0.182:2	0/1:22,3:31:25:0.120:2	0/1:131,23:29:154:0.149:2	./.	0/1:144,48:29:193:0.250:2	0/1:153,36:28:189:0.190:2	0/1:142,56:29:198:0.283:2	0/1:108,21:30:129:0.163:2	0/1:84,27:29:111:0.243:2	0/1:62,12:29:74:0.162:2
chr2	129025928	rs200330310	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:174,12:31:187:0.065:2	0/1:120,16:31:136:0.118:2	./.	0/1:170,17:31:187:0.091:2	./.	0/1:155,16:30:171:0.094:2	0/1:179,16:31:195:0.082:2	0/1:159,27:32:187:0.145:2	0/1:178,13:30:191:0.068:2	0/1:157,31:31:188:0.165:2	0/1:176,11:30:188:0.059:2
chr2	129026227	rs3958533	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,71:32:186:0.382:2	0/1:68,79:32:147:0.537:2	0/1:33,14:32:47:0.298:2	0/1:141,48:33:189:0.254:2	./.	0/1:112,79:32:191:0.414:2	0/1:103,89:32:192:0.464:2	0/1:101,83:32:184:0.451:2	0/1:122,58:33:182:0.322:2	0/1:84,80:32:164:0.488:2	0/1:63,32:32:95:0.337:2
chr2	129026249	rs200656779	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:113,68:31:181:0.376:2	0/1:67,76:31:143:0.531:2	0/1:33,15:31:48:0.313:2	./.	./.	./.	0/1:129,39:31:168:0.232:2	0/1:131,44:31:175:0.251:2	./.	./.	./.
chr2	129026345	rs199809104	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:105,20:30:125:0.160:2	0/1:57,17:31:74:0.230:2	./.	0/1:93,13:31:106:0.123:2	./.	0/1:80,28:31:108:0.259:2	0/1:81,18:31:99:0.182:2	0/1:85,27:30:112:0.241:2	0/1:96,7:31:104:0.068:2	0/1:72,19:31:91:0.209:2	0/1:40,6:29:46:0.130:2
chr2	129026358	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:97,11:30:108:0.102:2	0/1:51,7:31:58:0.121:2	./.	./.	./.	./.	0/1:84,10:33:94:0.106:2	0/1:97,8:33:105:0.076:2	./.	./.	./.
chr2	129075790	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:31:20:0.200:2	0/1:13,13:30:26:0.500:2	./.	./.	./.	0/1:15,5:30:20:0.250:2	./.	0/1:8,5:30:13:0.385:2
chr2	129075797	rs199993343	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:34:24:0.167:2	./.	0/1:19,5:32:24:0.208:2	./.	0/1:8,9:29:17:0.529:2	0/1:13,3:33:16:0.188:2
chr2	129075877	rs200979099	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,36:30:65:0.554:2	0/1:28,17:32:45:0.378:2	0/1:14,4:32:18:0.222:2	0/1:73,12:33:85:0.141:2	./.	0/1:73,32:32:105:0.305:2	0/1:75,36:32:111:0.324:2	0/1:55,59:31:114:0.518:2	0/1:78,18:33:97:0.188:2	0/1:58,28:32:86:0.326:2	0/1:68,11:33:79:0.139:2
chr2	129075961	rs61732881	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,7:27:24:0.292:2	./.	0/1:1,4:28:5:0.800:2	0/1:28,11:27:39:0.282:2	0/1:0,26:26:26:1.00:2	0/1:35,15:25:50:0.300:2	0/1:24,20:26:44:0.455:2	0/1:0,24:23:24:1.00:2	0/1:0,22:25:22:1.00:2	0/1:13,17:26:30:0.567:2	0/1:17,16:25:33:0.485:2
chr2	129076065	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.
chr2	130737901	rs199700858	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,5:29:132:0.038:2
chr2	130738031	rs200482871	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:32:196:0.031:2	./.
chr2	130738068	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,5:31:200:0.025:2	./.	./.	./.	./.	./.	./.
chr2	130738100	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:30:198:0.025:2	./.
chr2	130738163	rs144773989	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,76:31:189:0.402:2	0/1:126,71:32:197:0.360:2	0/1:40,19:31:59:0.322:2	0/1:55,128:31:183:0.699:2	0/1:61,133:31:194:0.686:2	0/1:62,129:31:191:0.675:2	0/1:57,135:31:192:0.703:2	0/1:74,110:31:184:0.598:2	0/1:62,131:32:193:0.679:2	0/1:136,61:31:197:0.310:2	./.
chr2	130738778	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130738855	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,7:27:198:0.035:2	./.	./.	./.	./.	./.
chr2	130738858	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:33:199:0.030:2	./.	./.	./.
chr2	130738860	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	./.	./.	./.	./.	./.
chr2	130739462	rs67910912	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,7:32:75:0.093:2	0/1:51,7:31:58:0.121:2	./.	./.	./.	./.	./.	./.
chr2	130739463	rs72863817	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,7:34:76:0.092:2	0/1:51,7:34:58:0.121:2	./.	./.	./.	./.	./.	./.
chr2	130739577	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr2	130739600	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.
chr2	130739644	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:68:0.060:2	./.
chr2	130739891	rs11674996	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,97:31:187:0.519:2	0/1:103,71:32:174:0.408:2	0/1:20,10:32:30:0.333:2	0/1:6,172:31:178:0.966:2	0/1:13,122:30:135:0.904:2	0/1:8,154:31:162:0.951:2	0/1:14,148:31:162:0.914:2	0/1:9,159:31:168:0.946:2	0/1:4,186:32:191:0.979:2	0/1:98,71:32:169:0.420:2	./.
chr2	130831904	rs201147063	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,48:33:195:0.246:2	./.	./.
chr2	130831930	rs200913020	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,30:32:190:0.158:2	0/1:156,37:31:193:0.192:2	0/1:67,13:31:80:0.163:2	0/1:150,42:31:192:0.219:2	0/1:163,32:32:195:0.164:2	0/1:163,32:31:195:0.164:2	0/1:164,33:32:197:0.168:2	0/1:165,35:31:200:0.175:2	0/1:175,16:32:191:0.084:2	0/1:164,30:32:194:0.155:2	0/1:156,34:31:190:0.179:2
chr2	130832020	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,18:32:187:0.096:2	./.
chr2	130832042	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,18:32:182:0.099:2	0/1:162,17:31:179:0.095:2	0/1:76,4:31:80:0.050:2	0/1:138,44:31:183:0.242:2	0/1:155,42:30:197:0.213:2	0/1:161,34:30:195:0.174:2	0/1:175,22:30:198:0.112:2	0/1:175,21:31:196:0.107:2	0/1:174,18:31:192:0.094:2	0/1:173,15:30:188:0.080:2	./.
chr2	130832127	rs200243409	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,29:32:166:0.177:2	0/1:85,18:31:103:0.175:2	./.	0/1:116,44:31:160:0.275:2	0/1:117,22:31:139:0.158:2	0/1:113,35:31:148:0.236:2	0/1:100,21:31:121:0.174:2	0/1:146,17:31:163:0.104:2	0/1:115,18:33:134:0.135:2	./.	./.
chr2	130832165	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:99,23:31:122:0.189:2	0/1:53,12:32:65:0.185:2	./.	0/1:97,21:30:118:0.178:2	./.	./.	0/1:94,17:30:111:0.153:2	0/1:105,12:30:117:0.103:2	./.	./.	./.
chr2	130832185	rs202181461	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,16:29:98:0.163:2	0/1:35,13:31:48:0.271:2	0/1:8,5:26:13:0.385:2	0/1:66,22:31:88:0.250:2	0/1:68,20:31:88:0.227:2	0/1:55,31:29:86:0.360:2	0/1:64,26:31:91:0.289:2	0/1:60,28:31:88:0.318:2	0/1:48,8:29:56:0.143:2	0/1:68,14:31:82:0.171:2	0/1:62,29:30:92:0.319:2
chr2	130832216	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,9:29:68:0.134:2	./.	./.	./.	./.	0/1:44,8:32:52:0.154:2	./.
chr2	130832256	rs376938834	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,7:24:35:0.200:2	0/1:31,5:27:36:0.139:2	./.	./.	0/1:42,9:26:51:0.176:2	./.	0/1:45,7:25:52:0.135:2	./.	./.	0/1:29,5:28:34:0.147:2	0/1:47,5:27:52:0.096:2
chr2	130832292	rs75775141	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,17:31:40:0.425:2	0/1:16,17:30:33:0.515:2	./.	0/1:1,23:31:24:0.958:2	0/1:54,26:30:80:0.325:2	0/1:2,24:30:26:0.923:2	0/1:49,28:29:77:0.364:2	0/1:2,33:30:35:0.943:2	0/1:1,21:32:22:0.955:2	0/1:28,16:30:44:0.364:2	0/1:55,29:31:84:0.345:2
chr2	130832358	rs201946437	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:98,12:31:110:0.109:2	./.
chr2	130832444	rs2599794	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,18:30:114:0.158:2	0/1:53,14:30:67:0.209:2	./.	0/1:12,44:31:56:0.786:2	0/1:115,38:31:154:0.248:2	0/1:31,33:31:64:0.516:2	0/1:124,20:32:144:0.139:2	0/1:44,20:31:64:0.313:2	0/1:33,27:31:60:0.450:2	0/1:150,12:32:162:0.074:2	./.
chr2	130832531	rs2122977	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,73:27:190:0.384:2	0/1:57,49:27:106:0.462:2	./.	0/1:0,182:27:182:1.00:2	0/1:132,66:28:198:0.333:2	0/1:3,185:27:188:0.984:2	0/1:117,77:27:194:0.397:2	0/1:0,132:28:132:1.00:2	0/1:0,99:29:99:1.00:2	./.	0/1:188,6:28:194:0.031:2
chr2	130832598	rs3948036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr2	130832873	rs201958629	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,41:32:190:0.216:2	0/1:145,42:31:187:0.225:2	0/1:39,21:31:60:0.350:2	0/1:142,44:30:187:0.237:2	0/1:151,41:30:192:0.214:2	0/1:135,55:31:191:0.289:2	0/1:142,52:31:194:0.268:2	0/1:89,95:31:184:0.516:2	0/1:119,62:32:181:0.343:2	0/1:133,52:31:185:0.281:2	0/1:158,34:31:192:0.177:2
chr2	130832887	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,9:33:195:0.046:2	./.	./.	./.	./.	./.	./.
chr2	130832927	rs201630632	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:141,44:28:185:0.238:2	0/1:150,41:27:191:0.215:2	./.	./.	./.	./.	./.	0/1:131,59:29:190:0.311:2	./.	0/1:161,33:29:194:0.170:2	./.
chr2	130832929	rs373944612	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:31:194:0.036:2	./.	./.	./.	./.
chr2	130833050	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,7:31:194:0.036:2	./.	./.	./.	./.	0/1:189,6:30:195:0.031:2	./.
chr2	130833091	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,10:30:140:0.072:2	./.
chr2	130833096	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,10:29:143:0.070:2	./.
chr2	130833115	.	T	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:179,5:32:184:0.027:2	0/1:148,4:32:152:0.026:2	./.	./.	0/1:142,6:32:149:0.041:2	./.	0/1:118,4:31:123:0.033:2	0/1:113,5:31:118:0.042:2	0/1:118,7:30:125:0.056:2	0/1:122,16:32:138:0.116:2	./.
chr2	130833120	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:173,5:32:178:0.028:2	0/1:146,7:33:153:0.046:2	./.	0/1:190,4:33:194:0.021:2	./.	./.	0/1:101,5:28:106:0.047:2	0/1:105,5:32:110:0.045:2	0/1:121,7:32:128:0.055:2	0/1:129,9:33:139:0.065:2	./.
chr2	130843447	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:178,11:33:190:0.058:2	0/1:181,17:32:198:0.086:2	0/1:102,13:32:115:0.113:2	0/1:143,21:33:164:0.128:2	0/1:178,15:34:193:0.078:2	0/1:126,12:32:138:0.087:2	0/1:179,18:33:198:0.091:2	0/1:115,22:32:137:0.161:2	0/1:144,25:34:169:0.148:2	0/1:181,12:33:193:0.062:2	0/1:186,7:33:193:0.036:2
chr2	130843529	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.
chr2	130843559	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.
chr2	130845666	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,9:34:57:0.158:2	0/1:22,11:33:33:0.333:2	./.	0/1:19,28:33:47:0.596:2	./.	0/1:31,24:33:55:0.436:2	0/1:11,5:33:16:0.313:2	0/1:34,4:34:38:0.105:2	0/1:34,29:34:64:0.460:2	./.	./.
chr2	130851048	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,9:32:147:0.061:2	./.	0/1:133,8:32:141:0.057:2	0/1:167,8:32:175:0.046:2	0/1:138,6:33:144:0.042:2	0/1:147,8:32:155:0.052:2	./.	./.
chr2	130857122	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,31:32:192:0.161:2	0/1:175,22:32:197:0.112:2	0/1:119,19:32:138:0.138:2	0/1:146,51:33:197:0.259:2	0/1:163,35:33:198:0.177:2	0/1:165,32:33:197:0.162:2	0/1:178,22:33:200:0.110:2	0/1:178,18:33:196:0.092:2	0/1:172,24:34:196:0.122:2	0/1:155,43:32:198:0.217:2	0/1:164,30:33:194:0.155:2
chr2	130869585	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	0/1:100,8:30:108:0.074:2	./.	./.	./.
chr2	130869597	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,5:28:95:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr2	130869609	rs62163064	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:149,28:33:177:0.158:2	0/1:98,25:32:123:0.203:2	./.	0/1:2,47:32:49:0.959:2	0/1:72,20:32:92:0.217:2	0/1:1,67:32:68:0.985:2	0/1:79,22:33:101:0.218:2	0/1:1,48:32:49:0.980:2	0/1:0,58:34:58:1.00:2	0/1:159,13:32:172:0.076:2	./.
chr2	130877584	rs201936889	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:172,7:32:179:0.039:2	0/1:168,10:32:178:0.056:2	./.	0/1:9,30:30:39:0.769:2	0/1:191,7:30:198:0.035:2	0/1:7,26:29:33:0.788:2	./.	0/1:13,25:29:38:0.658:2	0/1:3,35:30:38:0.921:2	./.	./.
chr2	130877593	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,5:28:60:0.083:2	./.	0/1:48,9:29:57:0.158:2	0/1:187,9:32:196:0.046:2	./.	0/1:49,4:27:53:0.075:2	0/1:185,7:33:192:0.036:2	./.
chr2	130877604	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,5:28:77:0.065:2	./.	0/1:61,6:30:67:0.090:2	0/1:188,5:32:193:0.026:2	./.	./.	./.	./.
chr2	130877618	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,3:35:82:0.037:2	./.	0/1:74,11:32:85:0.129:2	./.	./.	./.
chr2	130877711	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:27:177:0.034:2
chr2	130877752	rs77273091	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,60:29:156:0.385:2	0/1:51,54:29:105:0.514:2	./.	0/1:5,155:30:160:0.969:2	0/1:75,98:30:173:0.566:2	0/1:1,154:30:155:0.994:2	0/1:80,76:29:156:0.487:2	0/1:1,163:29:164:0.994:2	0/1:0,143:30:143:1.00:2	0/1:87,89:29:176:0.506:2	0/1:161,13:29:174:0.075:2
chr2	130877782	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:31:175:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130877802	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:28:173:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130877892	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:150,14:30:165:0.085:2	0/1:101,9:32:110:0.082:2	./.	0/1:165,13:30:178:0.073:2	0/1:173,16:31:189:0.085:2	./.	0/1:177,7:30:185:0.038:2	0/1:169,13:30:182:0.071:2	0/1:146,9:32:155:0.058:2	0/1:148,15:31:163:0.092:2	./.
chr2	130877893	rs375216280	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,7:32:163:0.043:2	0/1:106,6:32:112:0.054:2	./.	./.	./.	0/1:184,6:31:190:0.032:2	0/1:178,5:30:183:0.027:2	./.	0/1:151,4:32:155:0.026:2	0/1:160,6:32:166:0.036:2	0/1:122,5:27:127:0.039:2
chr2	130877913	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:157,7:29:165:0.043:2	./.	./.	0/1:181,7:24:188:0.037:2	./.	0/1:182,6:26:188:0.032:2	./.	./.	./.	0/1:175,5:30:180:0.028:2	./.
chr2	130877920	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:29:164:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130877921	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,7:31:162:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130877956	rs200786675	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,83:29:175:0.474:2	./.	./.	./.	./.	./.	./.
chr2	130877985	rs138589307	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:30:179:0.028:2	0/1:165,5:29:171:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130878058	rs201109823	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,51:31:186:0.274:2	./.
chr2	130897218	rs13006246	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,42:29:120:0.350:2	0/1:60,41:27:101:0.406:2	./.	0/1:80,61:29:141:0.433:2	./.	./.	0/1:124,59:28:183:0.322:2	0/1:3,160:28:163:0.982:2	0/1:3,133:29:136:0.978:2	./.	./.
chr2	130897234	rs3177472	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,80:31:146:0.548:2	0/1:112,76:31:188:0.404:2	0/1:2,176:31:178:0.989:2	0/1:181,4:32:185:0.022:2	./.	./.	0/1:70,73:31:143:0.510:2	./.
chr2	130897620	rs76485676	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,8:31:46:0.174:2	0/1:31,11:30:42:0.262:2	0/1:2,20:33:22:0.909:2	./.	./.	./.	0/1:40,17:31:57:0.298:2	./.
chr2	130897665	rs202218049	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,3:33:58:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr2	130898757	rs187030331	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,8:30:113:0.071:2	./.	0/1:159,4:32:163:0.025:2	./.	./.	0/1:124,6:29:130:0.046:2	0/1:170,19:32:189:0.101:2
chr2	130898813	rs142452531	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:102,20:31:122:0.164:2	0/1:69,7:31:76:0.092:2	./.	0/1:105,24:32:129:0.186:2	./.	./.	./.	0/1:6,35:31:41:0.854:2	0/1:2,33:32:35:0.943:2	./.	./.
chr2	130899791	rs141892357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,15:31:54:0.278:2	./.	0/1:129,46:31:175:0.263:2	./.	./.	./.	./.	./.	0/1:105,29:30:134:0.216:2
chr2	130899804	rs138331089	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,55:27:144:0.382:2	0/1:57,36:28:93:0.387:2	0/1:34,5:29:39:0.128:2	0/1:4,122:27:126:0.968:2	0/1:82,58:26:140:0.414:2	0/1:1,115:26:116:0.991:2	0/1:76,34:26:110:0.309:2	0/1:0,95:27:95:1.00:2	0/1:0,69:27:70:1.00:2	0/1:0,55:26:56:1.00:2	0/1:87,47:25:134:0.351:2
chr2	130900498	rs184667955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,39:30:116:0.339:2	./.
chr2	130900537	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.
chr2	130902052	rs7569956	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:84,5:33:89:0.056:2	0/1:56,9:32:65:0.138:2	./.	0/1:96,19:32:115:0.165:2	./.	0/1:77,9:33:86:0.105:2	./.	./.	./.	./.	./.
chr2	130902067	rs60089935	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,46:30:125:0.368:2	0/1:40,35:30:75:0.467:2	0/1:12,85:30:97:0.876:2	0/1:47,42:30:89:0.472:2	./.	./.	./.	./.
chr2	130902194	rs60152285	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,66:31:188:0.351:2	0/1:132,55:31:187:0.294:2	0/1:75,117:31:192:0.609:2	0/1:134,57:31:191:0.298:2	./.	./.	0/1:89,49:32:138:0.355:2	./.
chr2	130902549	rs34080706	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.
chr2	130910682	rs143470110	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.
chr2	130911381	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:166,10:31:177:0.057:2	0/1:170,8:31:178:0.045:2	./.	0/1:189,6:32:195:0.031:2	./.	0/1:174,6:31:180:0.033:2	./.	./.	./.	./.	./.
chr2	130912696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.	./.
chr2	130912720	rs80067546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,15:34:88:0.170:2	./.
chr2	130912778	rs149268431	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,8:32:94:0.085:2	./.
chr2	130912789	rs148027738	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,6:32:98:0.061:2	./.
chr2	130918834	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2
chr2	130925088	rs10909567	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,29:31:70:0.414:2	0/1:41,47:31:88:0.534:2	0/1:0,63:31:63:1.00:2	0/1:35,45:30:80:0.563:2	./.	./.	./.	./.
chr2	130925160	rs200256360	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,9:20:81:0.111:2	./.	./.	./.	./.	./.	0/1:29,6:25:35:0.171:2
chr2	130929987	rs145875881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,75:32:157:0.481:2	./.	./.	./.	./.	./.	./.
chr2	130930189	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,7:32:199:0.035:2	./.	0/1:182,5:32:187:0.027:2	./.	./.	./.	./.	./.
chr2	130930935	rs2443637	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,5:30:145:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	130939163	rs146359515	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr2	130939348	rs1817097	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,18:29:27:0.667:2	0/1:21,10:29:31:0.323:2	0/1:0,23:29:23:1.00:2	0/1:18,11:29:29:0.379:2	./.	./.	./.	./.
chr2	130939381	rs192840659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,12:29:15:0.800:2	./.
chr2	130948087	rs71422855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:30:46:0.500:2	./.	./.	./.	./.
chr2	130949411	rs10208844	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,102:30:102:1.00:2	0/1:39,26:29:65:0.400:2	0/1:0,69:30:69:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,75:30:75:1.00:2
chr2	130949462	rs1052456	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:30:169:0.036:2	./.	./.	./.	./.
chr2	130949491	rs60154251	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,51:31:127:0.402:2	0/1:40,15:31:55:0.273:2	./.	0/1:87,46:31:133:0.346:2	0/1:98,31:29:129:0.240:2	0/1:1,97:31:98:0.990:2	0/1:105,72:31:177:0.407:2	./.	./.	./.	./.
chr2	130949511	rs138838108	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,59:31:130:0.454:2	./.
chr2	130949553	rs1052422	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,32:30:109:0.294:2	0/1:36,21:28:57:0.368:2	./.	0/1:77,31:31:108:0.287:2	0/1:77,16:29:93:0.172:2	0/1:0,49:30:51:1.00:2	0/1:91,24:31:115:0.209:2	./.	./.	./.	./.
chr2	130951375	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,10:19:63:0.159:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130951395	rs188142199	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.
chr2	130951428	rs143310442	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,24:25:179:0.134:2	./.	./.	./.	./.	./.	0/1:110,21:26:131:0.160:2
chr2	130951488	rs2443644	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,37:26:193:0.192:2	./.	./.	./.	./.	./.	0/1:132,41:29:173:0.237:2
chr2	130951548	rs1052319	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,87:32:89:0.978:2	0/1:0,53:31:53:1.00:2	0/1:0,22:32:22:1.00:2	0/1:3,137:32:140:0.979:2	0/1:73,87:31:161:0.544:2	0/1:2,80:31:82:0.976:2	0/1:3,117:32:120:0.975:2	0/1:4,180:32:184:0.978:2	0/1:1,174:33:176:0.994:2	0/1:1,96:32:97:0.990:2	0/1:74,101:32:175:0.577:2
chr2	130951566	rs7340193	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,89:31:92:0.967:2	0/1:1,57:31:58:0.983:2	0/1:0,22:31:22:1.00:2	0/1:3,132:31:135:0.978:2	0/1:75,95:31:170:0.559:2	0/1:2,73:31:75:0.973:2	0/1:4,127:31:131:0.969:2	0/1:4,180:31:184:0.978:2	0/1:1,172:32:173:0.994:2	0/1:1,90:32:91:0.989:2	0/1:70,107:31:178:0.605:2
chr2	130951581	rs1052312	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,20:31:79:0.253:2	0/1:45,19:28:64:0.297:2	./.	0/1:95,28:29:123:0.228:2	0/1:151,17:30:168:0.101:2	0/1:2,36:30:38:0.947:2	0/1:113,20:30:133:0.150:2	./.	./.	0/1:69,20:29:89:0.225:2	./.
chr2	130951584	rs7340507	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,22:27:81:0.272:2	0/1:46,18:27:64:0.281:2	./.	0/1:97,28:29:125:0.224:2	0/1:154,17:29:171:0.099:2	0/1:2,35:29:37:0.946:2	0/1:113,19:29:132:0.144:2	./.	./.	0/1:69,20:29:89:0.225:2	./.
chr2	130951599	rs149164713	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	130951638	rs141240951	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,11:28:133:0.083:2	0/1:93,5:33:98:0.051:2	./.	0/1:148,14:31:162:0.086:2	./.	0/1:139,15:31:155:0.097:2	./.	./.	./.	./.	./.
chr2	130951754	rs13000249	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,55:32:184:0.299:2	0/1:97,23:30:120:0.192:2	./.	0/1:147,39:32:186:0.210:2	0/1:162,35:31:197:0.178:2	0/1:50,122:32:172:0.709:2	0/1:135,53:32:188:0.282:2	./.	./.	./.	./.
chr2	130951848	rs2259488	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,34:31:135:0.252:2	0/1:88,23:31:111:0.207:2	./.	0/1:138,40:32:178:0.225:2	0/1:116,21:30:137:0.153:2	0/1:1,76:32:78:0.987:2	0/1:151,28:31:179:0.156:2	./.	0/1:191,5:33:196:0.026:2	./.	0/1:167,13:31:180:0.072:2
chr2	130951949	rs62165074	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,74:31:179:0.416:2	0/1:73,49:31:122:0.402:2	./.	0/1:101,90:31:192:0.471:2	0/1:127,67:30:194:0.345:2	0/1:2,179:30:181:0.989:2	0/1:122,72:31:195:0.371:2	./.	./.	./.	./.
chr2	130952038	rs13000721	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,28:29:94:0.301:2	0/1:46,36:30:82:0.439:2	./.	0/1:92,36:29:128:0.281:2	0/1:101,33:29:134:0.246:2	0/1:1,83:29:84:0.988:2	0/1:85,30:29:115:0.261:2	./.	./.	./.	./.
chr2	130952718	rs3853852	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,36:32:152:0.237:2	0/1:62,31:31:93:0.333:2	./.	0/1:105,35:31:140:0.250:2	0/1:137,28:32:165:0.170:2	0/1:6,88:31:94:0.936:2	0/1:118,43:32:161:0.267:2	./.	./.	./.	./.
chr2	130952725	rs3863907	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,35:31:141:0.248:2	0/1:59,29:31:88:0.330:2	./.	0/1:101,43:31:144:0.299:2	0/1:135,31:31:166:0.187:2	0/1:2,88:31:90:0.978:2	0/1:117,49:31:166:0.295:2	./.	./.	0/1:103,54:31:157:0.344:2	0/1:183,6:28:189:0.032:2
chr2	130953795	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,9:30:187:0.048:2	0/1:116,8:27:124:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130955921	rs148496168	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,6:30:140:0.043:2	./.	./.	./.	./.	./.	0/1:147,17:30:164:0.104:2
chr2	130955925	rs142819527	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:137,6:32:144:0.042:2	./.	./.	./.	./.	./.	0/1:144,16:31:165:0.100:2
chr2	130955951	rs116389436	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,6:28:136:0.044:2	./.	./.	./.	./.	./.	0/1:131,17:30:148:0.115:2
chr2	131097247	rs55684765	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,64:32:151:0.424:2	0/1:69,48:32:117:0.410:2	./.
chr2	131097253	rs56017827	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,68:31:161:0.422:2	0/1:69,49:29:118:0.415:2	./.
chr2	131100496	rs11542416	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:34:93:0.452:2	0/1:75,56:33:131:0.427:2	./.
chr2	131100734	rs11542411	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,11:31:18:0.611:2	0/1:4,8:31:12:0.667:2	./.
chr2	131103635	rs11542415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,84:30:172:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr2	131128201	rs1533567	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	131128204	rs1533566	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	131130498	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,13:14:104:0.125:2	0/1:76,14:16:90:0.156:2	0/1:81,17:10:98:0.173:2	0/1:86,12:15:98:0.122:2	0/1:64,13:13:77:0.169:2	0/1:56,9:17:65:0.138:2	0/1:72,14:15:86:0.163:2
chr2	131220431	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.
chr2	131220502	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,10:31:40:0.250:2	0/1:19,6:30:25:0.240:2	./.	0/1:34,14:31:48:0.292:2	0/1:46,5:31:51:0.098:2	0/1:37,15:32:52:0.288:2	0/1:35,6:31:41:0.146:2	0/1:37,8:31:45:0.178:2	0/1:44,10:31:54:0.185:2	0/1:37,10:29:47:0.213:2	0/1:45,9:31:54:0.167:2
chr2	131220544	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131220592	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,8:33:104:0.077:2	./.
chr2	131220614	rs201238433	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,7:32:105:0.067:2	0/1:62,7:32:69:0.101:2	./.	0/1:137,20:31:157:0.127:2	0/1:111,41:31:152:0.270:2	0/1:121,33:31:154:0.214:2	0/1:142,26:31:168:0.155:2	0/1:138,13:32:151:0.086:2	0/1:128,13:32:141:0.092:2	0/1:111,10:33:121:0.083:2	./.
chr2	131220699	rs199773105	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,10:32:95:0.105:2	./.	0/1:90,15:30:105:0.143:2	0/1:91,10:31:101:0.099:2	0/1:96,10:32:106:0.094:2	0/1:85,4:33:89:0.045:2	./.	./.
chr2	131220737	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,6:30:90:0.067:2	0/1:88,7:32:95:0.074:2	./.	./.	./.
chr2	131220828	rs190931019	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,4:31:6:0.667:2	0/1:1,2:34:3:0.667:2	./.	0/1:2,6:32:8:0.750:2	0/1:5,5:32:10:0.500:2	./.	0/1:0,5:30:5:1.00:2	0/1:3,3:33:6:0.500:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,4:27:4:1.00:2
chr2	131220830	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:28:10:0.400:2	./.	./.	./.	./.	0/1:3,5:28:8:0.625:2	./.
chr2	131220831	rs201878083	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,4:27:6:0.667:2	0/1:1,3:28:4:0.750:2	./.	0/1:2,8:28:10:0.800:2	0/1:1,9:28:10:0.900:2	0/1:14,4:28:19:0.222:2	0/1:0,4:24:4:1.00:2	0/1:6,4:29:10:0.400:2	./.	0/1:2,7:30:9:0.778:2	0/1:2,4:27:6:0.667:2
chr2	131220864	rs147268452	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,12:31:32:0.387:2	0/1:17,5:32:22:0.227:2	./.	0/1:32,16:32:48:0.333:2	0/1:23,11:30:34:0.324:2	0/1:30,11:30:41:0.268:2	0/1:14,22:31:36:0.611:2	0/1:27,17:31:44:0.386:2	0/1:16,12:32:28:0.429:2	0/1:16,7:27:23:0.304:2	0/1:12,12:30:24:0.500:2
chr2	131220961	.	T	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,19:31:148:0.128:2	0/1:74,7:32:81:0.086:2	./.	0/1:174,19:31:193:0.098:2	0/1:193,7:33:200:0.035:2	0/1:175,20:32:195:0.103:2	0/1:149,41:31:190:0.216:2	0/1:187,8:31:195:0.041:2	0/1:168,14:35:182:0.077:2	./.	./.
chr2	131220971	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,3:33:28:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131221102	rs139258542	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,61:29:98:0.622:2	0/1:27,40:29:67:0.597:2	0/1:4,9:30:13:0.692:2	0/1:64,80:28:144:0.556:2	0/1:42,86:28:128:0.672:2	0/1:58,74:29:132:0.561:2	0/1:54,103:29:159:0.656:2	0/1:71,101:29:172:0.587:2	0/1:49,66:30:115:0.574:2	0/1:28,82:29:110:0.745:2	0/1:61,46:30:107:0.430:2
chr2	131221103	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,6:32:129:0.047:2	./.	./.	./.	./.	0/1:106,6:32:112:0.054:2	./.
chr2	131221170	rs144934754	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,72:31:88:0.818:2	0/1:13,42:31:55:0.764:2	0/1:1,6:30:7:0.857:2	0/1:27,82:31:109:0.752:2	0/1:18,71:31:89:0.798:2	0/1:33,82:30:115:0.713:2	0/1:35,88:31:123:0.715:2	0/1:44,96:31:140:0.686:2	0/1:77,36:31:114:0.319:2	0/1:20,86:31:106:0.811:2	0/1:29,67:31:96:0.698:2
chr2	131221226	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,20:31:135:0.148:2	./.	./.	./.	./.
chr2	131221445	rs201589859	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,49:30:181:0.271:2	0/1:82,43:31:125:0.344:2	0/1:17,5:31:22:0.227:2	0/1:118,48:30:166:0.289:2	0/1:133,34:30:167:0.204:2	0/1:123,47:30:170:0.276:2	0/1:101,44:30:145:0.303:2	0/1:147,34:30:181:0.188:2	0/1:145,33:31:178:0.185:2	0/1:168,24:31:192:0.125:2	0/1:99,51:31:150:0.340:2
chr2	131221499	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,7:33:186:0.038:2	0/1:132,6:34:138:0.043:2	./.	0/1:182,6:31:188:0.032:2	0/1:186,9:31:195:0.046:2	0/1:160,14:34:174:0.080:2	0/1:154,9:34:163:0.055:2	./.	0/1:176,6:34:182:0.033:2	./.	0/1:191,5:33:196:0.026:2
chr2	131221560	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:136,20:32:156:0.128:2	0/1:115,14:32:129:0.109:2	./.	./.	./.	./.	./.	0/1:127,20:32:147:0.136:2	./.	0/1:144,12:32:156:0.077:2	./.
chr2	131221600	rs199697413	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,11:31:62:0.177:2	./.	./.	./.	./.	0/1:79,19:33:98:0.194:2	./.
chr2	131221622	rs201809436	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,32:31:67:0.478:2	./.	./.	./.	./.	0/1:57,60:31:117:0.513:2	./.
chr2	131221626	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:29:78:0.051:2	./.	./.	./.
chr2	131221654	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.
chr2	131221662	rs200726249	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.
chr2	131221663	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:33:56:0.071:2	./.	./.	0/1:14,4:31:18:0.222:2	./.	0/1:106,5:31:111:0.045:2	0/1:7,6:33:13:0.462:2
chr2	131221668	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,5:32:56:0.089:2	./.	./.	./.	./.	./.	0/1:1,3:34:4:0.750:2
chr2	131221687	rs201536060	A	C,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:29:2:1.00:2	./.	./.
chr2	131221692	rs79602835	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:35:4:0.500:2	./.	./.	./.	0/1:54,4:31:58:0.069:2	0/1:8,3:35:11:0.273:2	./.	0/1:8,3:32:11:0.273:2	./.	./.	0/1:2,4:34:6:0.667:2
chr2	131221704	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:28:10:0.600:2	./.	./.	./.	./.	./.
chr2	131232011	rs202069604	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,90:33:196:0.459:2	0/1:138,60:33:198:0.303:2	0/1:63,41:32:105:0.394:2	0/1:134,65:33:199:0.327:2	0/1:118,78:32:196:0.398:2	0/1:127,70:32:197:0.355:2	0/1:126,69:32:195:0.354:2	0/1:118,78:32:196:0.398:2	0/1:131,66:34:197:0.335:2	0/1:131,67:33:198:0.338:2	0/1:122,76:33:198:0.384:2
chr2	131234265	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131234282	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:125,4:33:129:0.031:2	./.	./.	0/1:102,6:32:108:0.056:2	0/1:32,6:32:39:0.158:2	0/1:94,5:32:99:0.051:2	0/1:35,5:31:40:0.125:2	./.	./.	./.	0/1:190,4:34:194:0.021:2
chr2	131245713	rs201745094	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,57:32:185:0.308:2	0/1:144,49:32:194:0.254:2	0/1:76,25:32:101:0.248:2	0/1:145,55:32:200:0.275:2	0/1:101,84:31:185:0.454:2	0/1:147,48:31:195:0.246:2	0/1:182,13:31:195:0.067:2	0/1:173,21:32:194:0.108:2	0/1:156,41:33:197:0.208:2	0/1:100,91:32:191:0.476:2	0/1:150,45:32:195:0.231:2
chr2	131258188	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,9:31:193:0.047:2	0/1:122,11:29:133:0.083:2	0/1:69,6:32:75:0.080:2	0/1:178,10:28:188:0.053:2	0/1:126,13:32:139:0.094:2	0/1:177,10:29:188:0.053:2	0/1:120,6:33:126:0.048:2	0/1:174,15:30:189:0.079:2	0/1:166,24:31:190:0.126:2	0/1:180,10:32:190:0.053:2	0/1:168,23:32:191:0.120:2
chr2	131261429	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:192,5:31:197:0.025:2	./.	./.	0/1:192,6:30:198:0.030:2	./.	./.	./.	./.	./.	./.	0/1:193,5:30:198:0.025:2
chr2	131266502	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,6:30:171:0.035:2
chr2	131266530	rs10737928	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:32:164:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,64:31:65:1.00:2	0/1:1,180:32:182:0.994:2	0/1:46,138:31:187:0.750:2	0/1:0,171:31:172:1.00:2	0/1:1,176:31:178:0.994:2	./.	0/1:1,175:32:176:0.994:2	0/1:52,129:32:181:0.713:2	0/1:1,170:32:171:0.994:2
chr2	131266584	rs28754532	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,17:30:187:0.091:2	./.	./.	./.	./.	0/1:160,24:30:184:0.130:2	./.
chr2	131266613	rs28624496	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,8:29:185:0.043:2	./.
chr2	131266652	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,9:27:180:0.050:2	./.	./.	./.	./.	0/1:180,8:31:189:0.043:2	./.
chr2	131266662	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,11:24:189:0.058:2	./.	./.	./.	./.	0/1:179,9:27:189:0.048:2	./.
chr2	131266724	rs200614085	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:166,6:31:172:0.035:2	./.	./.	./.	0/1:184,6:30:190:0.032:2	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr2	131266746	rs62163654	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,33:30:193:0.171:2	./.	./.	./.	0/1:140,37:33:177:0.209:2	0/1:142,39:31:181:0.215:2	./.
chr2	131280812	rs200159465	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,38:30:144:0.264:2	./.	./.	./.	./.	0/1:83,37:31:120:0.308:2	./.
chr2	131303879	rs377645897	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:25:11:0.700:2	./.	./.	0/1:6,7:29:15:0.538:2	0/1:19,4:31:24:0.174:2	0/1:4,5:30:11:0.556:2	0/1:13,3:29:17:0.188:2	./.	0/1:0,2:34:2:1.00:2	0/1:4,4:28:10:0.500:2	0/1:6,10:30:17:0.625:2
chr2	131328544	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131355106	rs199715380	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,22:31:100:0.220:2	./.	./.	./.	./.	0/1:97,29:31:126:0.230:2	./.
chr2	131369161	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.	./.	./.
chr2	131369168	rs201816861	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,36:29:192:0.188:2	./.	./.	./.	0/1:150,41:32:191:0.215:2	0/1:143,44:31:187:0.235:2	./.
chr2	131369190	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,7:31:170:0.041:2	0/1:174,6:31:180:0.033:2	./.	0/1:179,5:32:184:0.027:2	0/1:182,5:32:188:0.027:2	0/1:179,5:32:185:0.027:2	./.	./.	0/1:185,4:32:189:0.021:2	./.	0/1:158,6:33:164:0.037:2
chr2	131369219	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,6:32:173:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131369252	rs199869890	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,11:26:186:0.059:2	./.	./.	./.	./.	0/1:170,20:26:190:0.105:2	./.
chr2	131369262	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:175,7:29:182:0.038:2	./.	./.	./.	0/1:180,9:30:189:0.048:2	./.	./.	./.	./.	0/1:174,17:31:191:0.089:2	0/1:180,5:30:186:0.027:2
chr2	131369273	.	A	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,17:33:179:0.097:2	0/1:160,13:31:173:0.075:2	0/1:40,4:32:44:0.091:2	0/1:171,15:31:186:0.081:2	./.	0/1:178,10:32:188:0.053:2	0/1:185,6:33:192:0.031:2	0/1:171,13:32:185:0.071:2	0/1:182,4:33:186:0.022:2	./.	0/1:178,11:32:189:0.058:2
chr2	131369330	rs374649517	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:31:182:0.027:2	./.
chr2	131374401	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:172,4:32:176:0.023:2	./.	0/1:180,6:31:186:0.032:2	./.	0/1:190,8:31:198:0.040:2	./.	./.	0/1:189,5:33:194:0.026:2	./.	./.
chr2	131390121	rs202134345	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,58:32:191:0.304:2	0/1:134,58:32:192:0.302:2	0/1:63,17:31:80:0.213:2	0/1:118,73:32:191:0.382:2	0/1:105,74:32:181:0.413:2	0/1:130,55:32:185:0.297:2	0/1:166,30:32:196:0.153:2	0/1:179,14:31:193:0.073:2	0/1:129,64:33:193:0.332:2	0/1:90,105:32:195:0.538:2	0/1:143,57:32:200:0.285:2
chr2	131403752	rs202202280	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:32:194:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:28:196:0.026:2	./.
chr2	131403823	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,67:33:189:0.354:2	0/1:123,59:33:182:0.324:2	0/1:37,26:31:63:0.413:2	0/1:126,68:33:194:0.351:2	0/1:129,54:32:183:0.295:2	0/1:124,65:32:189:0.344:2	0/1:108,61:32:169:0.361:2	0/1:122,73:32:195:0.374:2	0/1:127,59:33:186:0.317:2	0/1:121,69:33:190:0.363:2	0/1:122,65:33:187:0.348:2
chr2	131414158	rs117510452	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,18:33:188:0.096:2	0/1:153,36:33:189:0.190:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131414176	rs62165276	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,106:32:190:0.558:2	0/1:93,90:32:183:0.492:2	0/1:48,41:31:89:0.461:2	0/1:97,94:31:191:0.492:2	0/1:61,122:31:183:0.667:2	0/1:101,99:31:200:0.495:2	0/1:92,93:31:187:0.503:2	0/1:104,92:31:196:0.469:2	0/1:102,96:32:198:0.485:2	0/1:59,124:32:183:0.678:2	0/1:96,102:32:198:0.515:2
chr2	131414239	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,20:33:194:0.104:2	./.
chr2	131414279	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,10:32:196:0.051:2	./.
chr2	131414338	rs201265731	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,40:31:193:0.207:2	./.	./.	./.	./.
chr2	131414380	rs200995491	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,77:31:156:0.497:2	./.	./.	./.	./.	./.	./.
chr2	131414394	rs200109207	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,39:28:187:0.209:2	0/1:134,28:29:162:0.173:2	0/1:30,8:31:38:0.211:2	0/1:151,37:29:188:0.197:2	0/1:112,39:28:151:0.258:2	0/1:162,28:29:190:0.147:2	0/1:159,34:30:195:0.176:2	0/1:151,43:29:194:0.222:2	0/1:137,34:29:171:0.199:2	0/1:90,44:29:134:0.328:2	0/1:141,41:28:182:0.225:2
chr2	131414431	rs201034632	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,13:26:191:0.068:2	0/1:146,13:27:159:0.082:2	./.	0/1:172,9:28:181:0.050:2	0/1:151,17:27:168:0.101:2	0/1:173,6:29:179:0.034:2	0/1:185,7:28:192:0.036:2	./.	0/1:179,8:28:189:0.043:2	0/1:113,16:25:130:0.124:2	0/1:171,15:27:187:0.081:2
chr2	131414669	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,18:32:139:0.129:2	0/1:61,6:32:67:0.090:2	./.	0/1:136,17:31:153:0.111:2	0/1:60,21:31:81:0.259:2	0/1:147,13:31:160:0.081:2	0/1:141,15:32:156:0.096:2	0/1:142,6:31:148:0.041:2	0/1:114,5:31:119:0.042:2	0/1:70,18:31:88:0.205:2	0/1:116,11:30:127:0.087:2
chr2	131414736	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,10:31:108:0.093:2	./.	./.	./.	./.	./.	./.
chr2	131414737	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,56:28:118:0.475:2	0/1:49,28:28:77:0.364:2	./.	0/1:81,67:28:148:0.453:2	0/1:43,63:29:107:0.594:2	0/1:100,69:29:169:0.408:2	0/1:100,49:27:149:0.329:2	0/1:76,57:28:133:0.429:2	0/1:76,53:29:129:0.411:2	0/1:37,39:26:76:0.513:2	0/1:69,27:28:96:0.281:2
chr2	131414878	rs201354416	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:162,14:31:176:0.080:2	0/1:80,4:30:84:0.048:2	./.	0/1:164,18:32:182:0.099:2	0/1:176,13:31:190:0.069:2	0/1:162,13:32:175:0.074:2	0/1:139,36:31:175:0.206:2	0/1:186,9:31:195:0.046:2	0/1:169,15:34:184:0.082:2	./.	./.
chr2	131414975	.	A	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,29:31:96:0.305:2	0/1:34,13:31:47:0.277:2	./.	0/1:79,22:31:102:0.218:2	0/1:65,36:30:101:0.356:2	0/1:64,35:31:99:0.354:2	0/1:80,27:31:107:0.252:2	0/1:62,35:31:97:0.361:2	0/1:57,21:31:78:0.269:2	0/1:38,26:30:64:0.406:2	0/1:71,31:30:102:0.304:2
chr2	131415008	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,20:26:84:0.238:2	0/1:44,14:27:58:0.241:2	./.	0/1:79,13:26:92:0.141:2	0/1:58,22:26:80:0.275:2	0/1:53,22:26:75:0.293:2	0/1:80,11:26:91:0.121:2	0/1:71,19:25:90:0.211:2	0/1:53,16:27:69:0.232:2	0/1:38,16:26:54:0.296:2	0/1:62,20:26:83:0.244:2
chr2	131415011	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,13:31:73:0.178:2	./.	./.	./.	./.	./.
chr2	131415073	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	0/1:86,6:27:92:0.065:2
chr2	131415102	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:105,5:31:110:0.045:2	./.	./.	./.	./.	./.	0/1:119,7:29:126:0.056:2	./.	./.	./.	./.
chr2	131415140	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:147,19:29:166:0.114:2	0/1:102,5:30:107:0.047:2	./.	0/1:147,20:30:167:0.120:2	0/1:156,14:31:170:0.082:2	0/1:157,24:31:181:0.133:2	0/1:174,19:28:193:0.098:2	0/1:177,13:30:191:0.068:2	0/1:172,20:32:192:0.104:2	./.	./.
chr2	131415225	rs201205777	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,24:31:187:0.128:2	0/1:176,15:30:191:0.079:2	./.	0/1:152,41:31:193:0.212:2	0/1:165,30:29:196:0.154:2	0/1:152,39:31:191:0.204:2	0/1:170,20:31:190:0.105:2	0/1:169,23:32:192:0.120:2	0/1:171,24:32:195:0.123:2	0/1:170,24:30:194:0.124:2	./.
chr2	131415247	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:33:194:0.052:2	./.
chr2	131415337	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,45:31:184:0.245:2	0/1:147,35:32:182:0.192:2	0/1:54,16:30:70:0.229:2	0/1:146,44:31:190:0.232:2	0/1:142,52:31:194:0.268:2	0/1:146,46:31:192:0.240:2	0/1:158,37:31:195:0.190:2	0/1:141,54:31:195:0.277:2	0/1:160,35:32:195:0.179:2	0/1:128,65:32:193:0.337:2	0/1:125,64:32:189:0.339:2
chr2	131415363	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,15:31:188:0.080:2	./.	./.
chr2	131487673	rs272128	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,66:32:67:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,91:33:91:1.00:2	0/1:51,45:32:96:0.469:2	0/1:0,59:32:59:1.00:2	0/1:0,60:32:60:1.00:2
chr2	131520178	rs77687733	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	0/1:7,9:30:16:0.563:2	./.	0/1:7,4:31:11:0.364:2	./.
chr2	131520474	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:29:36:0.111:2	./.	./.	./.	./.
chr2	131520574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:134:0.030:2	./.	./.	./.	./.	./.
chr2	131520663	rs1905235	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,43:31:44:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,23:32:23:1.00:2
chr2	131524230	rs272100	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,3:27:3:1.00:2	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2
chr2	131524482	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.
chr2	131524745	rs72854999	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:32:50:0.551:2	0/1:24,19:32:43:0.442:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131672950	rs12464119	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,8:33:15:0.533:2	0/1:3,14:32:17:0.824:2	./.	0/1:0,17:31:17:1.00:2	0/1:9,7:32:16:0.438:2	0/1:0,23:32:23:1.00:2	0/1:0,17:31:17:1.00:2	0/1:9,4:27:13:0.308:2	./.	0/1:0,8:31:8:1.00:2	0/1:0,21:31:21:1.00:2
chr2	131673124	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:29:112:0.036:2	./.	./.	./.	./.
chr2	131673259	rs77678686	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,29:31:61:0.475:2	0/1:18,22:32:40:0.550:2	./.	./.	./.	./.	0/1:43,37:33:80:0.463:2	./.	./.	./.	./.
chr2	131673316	rs3739129	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,15:32:29:0.517:2	0/1:8,10:31:18:0.556:2	./.	0/1:0,39:31:39:1.00:2	0/1:7,8:32:15:0.533:2	0/1:1,43:31:44:0.977:2	0/1:1,44:32:45:0.978:2	0/1:13,18:32:31:0.581:2	./.	0/1:11,14:32:25:0.560:2	0/1:0,33:31:33:1.00:2
chr2	131673577	rs34513288	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,16:34:36:0.444:2	0/1:9,9:34:18:0.500:2	./.	0/1:26,26:33:52:0.500:2	./.	./.	./.	./.	0/1:0,49:34:49:1.00:2	./.	./.
chr2	131673702	rs62178867	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,9:29:33:0.273:2	./.	./.	0/1:26,14:31:40:0.350:2	./.	./.	./.
chr2	131673898	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr2	131674285	rs3739127	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:32:16:0.500:2	0/1:3,3:31:6:0.500:2	./.	0/1:8,7:31:15:0.467:2	0/1:8,7:31:15:0.467:2	0/1:0,13:30:13:1.00:2	0/1:0,14:29:14:1.00:2	0/1:9,7:30:18:0.438:2	./.	0/1:0,12:27:12:1.00:2	0/1:0,14:31:14:1.00:2
chr2	131688587	rs6718816	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,44:31:103:0.427:2	./.	./.	0/1:58,38:32:96:0.396:2	./.	./.	./.
chr2	131688783	rs61750360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:28:6:0.667:2	./.	0/1:58,39:31:97:0.402:2	./.	./.	0/1:64,47:31:111:0.423:2	./.	./.	./.
chr2	131704164	rs201813341	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131884344	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.	./.	./.	./.	./.
chr2	131976006	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:28:187:0.043:2	./.
chr2	131976272	rs62177515	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:31:129:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,102:32:103:0.990:2	0/1:100,71:32:171:0.415:2	0/1:68,51:31:119:0.429:2	0/1:7,113:32:120:0.942:2	0/1:1,132:33:134:0.992:2	0/1:0,99:32:99:1.00:2	0/1:0,106:32:106:1.00:2
chr2	131976353	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:156,30:30:186:0.161:2	0/1:144,24:29:168:0.143:2	./.	0/1:147,45:30:192:0.234:2	0/1:165,19:29:184:0.103:2	0/1:138,54:29:194:0.281:2	0/1:174,21:29:195:0.108:2	0/1:146,46:30:193:0.240:2	0/1:142,45:30:187:0.241:2	0/1:179,7:32:187:0.038:2	./.
chr2	131996938	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,13:30:194:0.067:2	0/1:174,23:32:197:0.117:2	0/1:98,21:32:119:0.176:2	0/1:154,44:32:198:0.222:2	0/1:162,35:32:197:0.178:2	0/1:182,16:31:198:0.081:2	0/1:173,19:33:193:0.099:2	0/1:188,10:33:198:0.051:2	0/1:179,16:33:195:0.082:2	0/1:166,34:31:200:0.170:2	0/1:178,20:33:198:0.101:2
chr2	132003013	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:185,5:31:191:0.026:2	0/1:131,6:33:137:0.044:2	./.	0/1:186,7:31:193:0.036:2	./.	0/1:191,6:31:197:0.030:2	./.	./.	0/1:191,5:33:197:0.026:2	./.	./.
chr2	132010500	rs201546189	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,68:34:198:0.343:2	./.
chr2	132010541	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:182,8:25:190:0.042:2	0/1:185,7:27:192:0.036:2	0/1:111,10:28:121:0.083:2	./.	0/1:186,6:26:192:0.031:2	./.	0/1:177,6:27:183:0.033:2	0/1:184,12:24:197:0.061:2	./.	0/1:186,7:28:193:0.036:2	0/1:175,14:27:189:0.074:2
chr2	132010612	rs201817040	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,10:33:197:0.051:2	0/1:180,15:33:195:0.077:2	0/1:107,7:32:114:0.061:2	0/1:182,9:33:191:0.047:2	0/1:174,9:33:183:0.049:2	0/1:173,18:33:191:0.094:2	0/1:164,12:33:176:0.068:2	0/1:177,10:33:187:0.053:2	0/1:189,7:35:196:0.036:2	0/1:170,12:33:182:0.066:2	0/1:155,33:34:188:0.176:2
chr2	132010624	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.
chr2	132010633	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	0/1:169,5:30:174:0.029:2	./.
chr2	132010634	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.
chr2	132020953	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.	./.	./.	0/1:156,10:34:166:0.060:2	0/1:190,7:33:197:0.036:2	0/1:191,4:35:195:0.021:2	0/1:191,7:32:198:0.035:2	0/1:183,12:33:195:0.062:2
chr2	132020958	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:189,6:31:195:0.031:2	./.	./.	./.	0/1:182,10:31:196:0.052:2	./.	0/1:172,7:33:180:0.039:2	0/1:189,6:33:195:0.031:2	./.	0/1:178,17:32:195:0.087:2	0/1:184,11:29:196:0.056:2
chr2	132020977	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.
chr2	132020982	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:32:195:0.031:2	./.
chr2	132021023	rs201534564	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,23:30:198:0.116:2	./.	./.	./.	./.	0/1:155,40:31:195:0.205:2	./.
chr2	132021085	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:174,17:34:192:0.089:2	0/1:148,26:31:174:0.149:2	./.	./.	./.	./.	./.	0/1:180,17:31:197:0.086:2	./.	0/1:181,16:33:197:0.081:2	./.
chr2	132021146	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:175,8:34:183:0.044:2	./.	./.	./.	0/1:149,6:33:155:0.039:2	0/1:187,9:33:196:0.046:2	0/1:150,4:33:154:0.026:2	./.	0/1:153,4:36:157:0.025:2	0/1:189,4:33:193:0.021:2	./.
chr2	132021200	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,28:31:180:0.156:2	0/1:107,21:31:128:0.164:2	0/1:24,5:30:29:0.172:2	0/1:156,27:29:183:0.148:2	0/1:162,35:30:197:0.178:2	0/1:141,38:30:179:0.212:2	0/1:99,49:30:148:0.331:2	0/1:165,31:30:196:0.158:2	0/1:167,26:31:193:0.135:2	0/1:162,28:31:190:0.147:2	0/1:93,24:30:117:0.205:2
chr2	132021404	rs201570000	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,28:32:163:0.172:2	./.	./.	./.	./.	0/1:108,31:31:139:0.223:2	./.
chr2	132021422	rs200048058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,42:32:125:0.336:2	./.	./.	./.	./.
chr2	132021475	rs11546936	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,12:31:141:0.086:2	./.	0/1:11,5:28:16:0.313:2	0/1:170,15:31:185:0.081:2	0/1:135,58:30:193:0.301:2	0/1:173,14:31:187:0.075:2	0/1:166,29:31:195:0.149:2	0/1:183,6:32:189:0.032:2	0/1:181,9:32:190:0.047:2	0/1:141,36:31:178:0.203:2	0/1:152,10:31:162:0.062:2
chr2	132021542	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	0/1:177,8:32:185:0.043:2	./.
chr2	132021547	rs7425410	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,36:31:188:0.191:2	0/1:94,12:31:106:0.113:2	0/1:29,4:32:33:0.121:2	0/1:132,53:32:185:0.286:2	0/1:152,36:32:189:0.191:2	0/1:157,39:31:196:0.199:2	0/1:165,27:33:192:0.141:2	0/1:159,35:31:194:0.180:2	0/1:169,23:32:192:0.120:2	0/1:154,21:31:175:0.120:2	0/1:133,10:32:143:0.070:2
chr2	132021629	rs7424029	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,28:31:189:0.148:2	0/1:99,16:30:115:0.139:2	./.	0/1:133,52:31:185:0.281:2	0/1:176,18:29:194:0.093:2	0/1:151,39:30:190:0.205:2	0/1:167,26:31:194:0.135:2	0/1:177,18:31:195:0.092:2	0/1:173,13:32:188:0.070:2	./.	./.
chr2	132021715	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:32:189:0.026:2	./.
chr2	132021781	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:115,5:25:120:0.042:2	./.	./.	./.	0/1:149,7:28:156:0.045:2	./.	./.	./.	./.	./.	0/1:123,13:32:136:0.096:2
chr2	132021815	rs369764537	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,7:32:29:0.241:2	./.	0/1:130,20:31:150:0.133:2	0/1:128,5:31:133:0.038:2	0/1:138,4:33:142:0.028:2	0/1:138,4:32:142:0.028:2	./.	0/1:99,31:32:130:0.238:2	./.
chr2	132021817	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	0/1:109,8:31:117:0.068:2
chr2	132021857	rs202106518	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,28:31:131:0.215:2	./.	./.	./.	./.	0/1:85,26:31:112:0.234:2	./.
chr2	132021860	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,4:28:19:0.211:2	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.
chr2	132021888	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,7:28:135:0.052:2	./.	./.	./.	./.	./.	./.	0/1:87,5:26:92:0.054:2
chr2	132021908	rs201238743	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:91,26:31:118:0.222:2	0/1:65,18:30:84:0.217:2	./.	0/1:133,38:30:171:0.222:2	./.	./.	0/1:112,21:30:133:0.158:2	0/1:113,38:29:151:0.252:2	./.	./.	./.
chr2	132021946	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:136,40:32:176:0.227:2	0/1:102,19:31:121:0.157:2	./.	0/1:118,77:31:195:0.395:2	0/1:166,28:30:194:0.144:2	0/1:135,56:30:191:0.293:2	0/1:166,24:32:190:0.126:2	0/1:150,40:31:190:0.211:2	0/1:157,30:32:189:0.160:2	./.	./.
chr2	132022031	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,22:32:185:0.120:2	0/1:174,20:31:194:0.103:2	./.	0/1:150,43:30:193:0.223:2	0/1:151,43:31:194:0.222:2	0/1:146,45:30:191:0.236:2	0/1:175,19:31:194:0.098:2	0/1:171,23:32:194:0.119:2	0/1:174,21:31:195:0.108:2	0/1:170,24:31:195:0.124:2	./.
chr2	132022053	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,22:31:197:0.112:2	./.
chr2	132022143	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,47:31:193:0.244:2	0/1:130,50:31:180:0.278:2	0/1:53,31:32:84:0.369:2	0/1:136,55:30:191:0.288:2	0/1:157,41:31:198:0.207:2	0/1:142,52:30:194:0.268:2	0/1:145,51:31:196:0.260:2	0/1:142,53:30:197:0.272:2	0/1:167,26:32:193:0.135:2	0/1:147,46:32:193:0.238:2	0/1:141,44:31:187:0.238:2
chr2	132022169	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,10:27:191:0.053:2	./.	./.
chr2	132110663	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,69:32:197:0.350:2	./.	./.
chr2	132110828	rs373666409	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,28:32:43:0.651:2	0/1:15,12:32:27:0.444:2	./.	0/1:26,13:31:39:0.333:2	0/1:15,17:30:32:0.531:2	0/1:48,5:29:54:0.094:2	0/1:19,18:32:37:0.486:2	0/1:16,32:31:48:0.667:2	0/1:24,18:32:42:0.429:2	0/1:21,30:31:51:0.588:2	0/1:13,32:31:45:0.711:2
chr2	132120819	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:177,20:31:197:0.102:2	0/1:146,28:31:174:0.161:2	./.	0/1:160,37:30:197:0.188:2	0/1:164,34:30:198:0.172:2	0/1:145,46:31:191:0.241:2	0/1:157,33:31:190:0.174:2	0/1:153,39:31:192:0.203:2	0/1:154,33:31:187:0.176:2	0/1:171,22:29:193:0.114:2	./.
chr2	132120826	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:27:195:0.026:2	./.	./.	./.	./.
chr2	132120842	rs372991765	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.
chr2	132120854	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	./.	./.	./.	./.
chr2	132120914	rs199727320	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,92:33:194:0.474:2	./.
chr2	132121081	rs202135899	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:30:146:0.041:2
chr2	132121350	rs371054387	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	132121404	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.
chr2	132121559	rs6741338	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:26:64:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,20:26:20:1.00:2	0/1:0,135:26:135:1.00:2	0/1:0,138:26:138:1.00:2	0/1:0,158:25:158:1.00:2	0/1:0,128:25:128:1.00:2	0/1:0,139:26:139:1.00:2	0/1:0,121:27:121:1.00:2	0/1:0,78:27:78:1.00:2	0/1:0,71:27:71:1.00:2
chr2	132233740	rs2622026	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,96:29:144:0.671:2	./.	./.	./.	./.	./.	0/1:22,37:30:59:0.627:2
chr2	132233755	rs7561673	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,118:29:182:0.648:2	./.	./.	./.	./.	./.	0/1:30,38:30:68:0.559:2
chr2	132233785	rs7561684	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,120:31:186:0.645:2	./.	./.	./.	./.	./.	0/1:31,48:31:79:0.608:2
chr2	132236921	rs4065352	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,20:33:149:0.134:2	0/1:97,8:32:105:0.076:2	./.	0/1:171,21:32:192:0.109:2	0/1:131,17:30:148:0.115:2	0/1:158,37:31:195:0.190:2	0/1:159,28:31:187:0.150:2	./.	./.	0/1:134,24:32:158:0.152:2	./.
chr2	132236922	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.
chr2	132236963	rs72992284	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:149,35:32:184:0.190:2	0/1:133,25:31:158:0.158:2	./.	0/1:157,35:31:192:0.182:2	0/1:152,35:31:187:0.187:2	0/1:139,50:31:190:0.265:2	0/1:153,40:32:193:0.207:2	./.	./.	./.	./.
chr2	132237643	rs72992288	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:118,18:29:136:0.132:2	0/1:78,20:31:98:0.204:2	./.	0/1:148,40:30:188:0.213:2	0/1:166,28:29:194:0.144:2	0/1:137,43:29:180:0.239:2	0/1:157,30:29:188:0.160:2	./.	./.	./.	./.
chr2	132237693	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.
chr2	132237732	rs145612794	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:176,13:30:193:0.069:2	./.	./.	0/1:183,10:30:193:0.052:2	0/1:169,7:28:176:0.040:2	0/1:180,18:29:198:0.091:2	0/1:183,13:30:196:0.066:2	./.	./.	./.	./.
chr2	132237750	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:173,21:32:194:0.108:2	0/1:128,4:33:132:0.030:2	./.	0/1:183,10:32:193:0.052:2	0/1:178,12:31:190:0.063:2	0/1:179,19:33:198:0.096:2	0/1:187,9:31:196:0.046:2	./.	./.	./.	./.
chr2	132237927	rs200147665	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,26:32:153:0.170:2	0/1:86,27:32:113:0.239:2	./.	0/1:128,31:32:159:0.195:2	0/1:118,25:31:143:0.175:2	0/1:143,51:32:194:0.263:2	0/1:167,25:33:192:0.130:2	./.	./.	./.	./.
chr2	132237983	rs71347110	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:85,33:30:118:0.280:2	0/1:53,30:28:83:0.361:2	./.	0/1:102,56:29:159:0.354:2	0/1:107,8:28:115:0.070:2	0/1:122,57:29:179:0.318:2	./.	./.	./.	./.	0/1:96,11:28:107:0.103:2
chr2	132238082	rs138331264	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,6:29:147:0.041:2	./.	./.	./.	./.	./.	0/1:76,5:28:81:0.062:2
chr2	132238097	rs141085947	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,66:29:182:0.363:2	./.	./.	./.	./.	./.	./.	./.
chr2	132238100	rs140245426	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,65:30:182:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr2	132238169	rs2463337	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,4:33:180:0.022:2	0/1:136,53:32:189:0.280:2	./.	./.	./.	./.	./.	0/1:104,35:33:139:0.252:2
chr2	132238232	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,5:31:165:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	132238286	rs111626841	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,42:30:104:0.404:2	./.	./.	./.	./.	./.	0/1:49,42:32:92:0.462:2
chr2	132238298	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	132238306	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:66,10:15:76:0.132:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,9:17:79:0.114:2	./.
chr2	132238310	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:29:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	132238315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.
chr2	132240243	rs199950748	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,13:29:120:0.109:2	0/1:64,5:32:69:0.072:2	./.	0/1:103,21:31:124:0.169:2	0/1:105,23:29:128:0.180:2	0/1:113,31:29:144:0.215:2	0/1:107,22:29:129:0.171:2	./.	./.	./.	./.
chr2	132240334	rs2272356	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:114,19:32:133:0.143:2	0/1:74,6:32:80:0.075:2	./.	0/1:148,28:31:176:0.159:2	0/1:128,23:32:151:0.152:2	0/1:123,41:31:164:0.250:2	0/1:150,30:32:180:0.167:2	./.	./.	./.	./.
chr2	132240363	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,11:30:108:0.102:2	./.	./.	0/1:127,16:32:143:0.112:2	0/1:106,9:31:115:0.078:2	0/1:125,17:32:142:0.120:2	0/1:135,12:32:147:0.082:2	./.	0/1:150,6:34:156:0.038:2	./.	./.
chr2	132241704	rs11553182	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2
chr2	132241731	rs75021268	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,22:29:67:0.328:2	./.	./.	./.	./.	./.	0/1:28,15:27:43:0.349:2
chr2	132243757	rs6746103	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,45:28:190:0.237:2	./.	./.	./.	./.	./.	0/1:153,39:28:192:0.203:2	./.
chr2	132248336	rs59539470	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,26:32:77:0.342:2	./.	./.	./.	./.	./.	0/1:48,41:27:89:0.461:2
chr2	132248379	rs12469517	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,45:32:94:0.479:2	0/1:26,25:32:51:0.490:2	./.	0/1:62,52:32:114:0.456:2	0/1:31,30:31:61:0.492:2	0/1:50,58:31:108:0.537:2	./.	0/1:93,4:34:97:0.041:2	./.	0/1:95,5:28:100:0.050:2	0/1:45,40:31:85:0.471:2
chr2	132248416	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,5:30:120:0.042:2
chr2	132249600	rs2272357	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,29:31:70:0.414:2	0/1:22,18:32:40:0.450:2	./.	0/1:55,37:29:92:0.402:2	./.	0/1:53,53:31:106:0.500:2	./.	./.	./.	./.	./.
chr2	132249801	rs10178851	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	0/1:18,4:28:22:0.182:2	./.	./.	./.
chr2	132249818	rs1042999	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:24:13:0.385:2	./.	./.	./.	0/1:18,4:28:22:0.182:2	./.	./.	./.
chr2	132249863	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr2	132285564	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.
chr2	132285919	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,30:32:161:0.186:2	0/1:107,34:31:141:0.241:2	0/1:118,47:30:165:0.285:2	0/1:107,36:31:143:0.252:2	./.	./.	0/1:112,29:32:141:0.206:2	./.
chr2	132286046	rs3101992	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,34:32:72:0.472:2	0/1:28,22:31:50:0.440:2	./.	0/1:75,37:32:112:0.330:2	0/1:52,25:30:77:0.325:2	0/1:72,29:32:101:0.287:2	./.	./.	./.	./.	0/1:42,26:32:68:0.382:2
chr2	132286061	rs60469601	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,28:32:59:0.475:2	0/1:25,19:31:44:0.432:2	./.	0/1:68,30:32:98:0.306:2	0/1:49,19:30:68:0.279:2	0/1:67,22:32:89:0.247:2	./.	./.	./.	./.	0/1:42,25:32:67:0.373:2
chr2	132287286	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.
chr2	132287287	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:117:0.034:2	./.	./.	./.	./.
chr2	132288315	rs11547023	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,7:32:28:0.250:2	./.	0/1:132,41:31:173:0.237:2	./.	./.	./.	./.	./.	0/1:100,32:32:132:0.242:2
chr2	132288362	rs201632382	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,59:29:159:0.371:2	0/1:83,34:29:117:0.291:2	./.	0/1:131,63:30:194:0.325:2	0/1:163,36:30:199:0.181:2	0/1:135,55:28:190:0.289:2	0/1:193,6:26:199:0.030:2	0/1:179,17:29:196:0.087:2	0/1:175,19:27:194:0.098:2	0/1:165,29:29:194:0.149:2	0/1:115,47:29:162:0.290:2
chr2	132288398	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	132289293	rs149647165	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,12:33:57:0.211:2	./.	./.	./.	./.	./.	0/1:58,18:32:76:0.237:2
chr2	132289349	rs147297526	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,12:32:61:0.197:2	0/1:19,8:31:27:0.296:2	./.	0/1:62,12:32:74:0.162:2	./.	./.	./.	0/1:147,29:32:176:0.165:2	0/1:125,33:33:158:0.209:2	./.	./.
chr2	132290441	rs76069883	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,9:31:75:0.123:2	0/1:47,5:30:52:0.096:2	0/1:77,12:31:89:0.135:2	./.	./.	./.	./.	./.
chr2	132290464	rs13660	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	0/1:37,15:31:52:0.288:2	./.	./.	./.	./.	./.	0/1:23,35:32:58:0.603:2
chr2	132290865	rs141731446	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,8:31:171:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr2	132290881	rs189219021	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:30:196:0.026:2	./.	./.	./.	./.
chr2	132509178	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,6:30:112:0.054:2	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:32:175:0.029:2	./.	./.
chr2	132524570	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,22:33:45:0.489:2	0/1:15,15:32:30:0.500:2	0/1:1,2:31:3:0.667:2	./.	./.	0/1:20,23:32:43:0.535:2	0/1:29,9:31:38:0.237:2	0/1:29,20:33:49:0.408:2	0/1:48,11:34:59:0.186:2	0/1:36,4:32:40:0.100:2	0/1:43,9:32:52:0.173:2
chr2	132524627	rs199947019	C	G,T	.	PASS	AC=6,1;AF=0.286,0.048;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0/1:32:39:0.132:2	0/1:31:20:0.150:2	./.	0/2:28:51:0.078:2	./.	0/1:32:28:0.259:2	0/1:32:21:0.190:2	0/1:31:29:0.185:2	0/1:34:40:0.225:2	./.	./.
chr2	132524776	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,4:32:27:0.148:2	0/1:139,44:31:183:0.240:2	0/1:143,39:31:182:0.214:2	0/1:64,121:31:185:0.654:2	0/1:101,80:31:181:0.442:2	0/1:90,94:32:184:0.511:2	0/1:92,93:32:185:0.503:2	0/1:122,59:32:181:0.326:2	0/1:131,52:32:183:0.284:2
chr2	132552735	rs200892484	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,16:32:33:0.485:2	0/1:137,59:31:196:0.301:2	0/1:153,43:31:196:0.219:2	0/1:77,105:31:182:0.577:2	0/1:100,97:31:197:0.492:2	0/1:81,118:31:199:0.593:2	0/1:69,85:32:154:0.552:2	0/1:132,65:32:197:0.330:2	0/1:125,66:31:191:0.346:2
chr2	132552884	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,9:27:44:0.209:2	0/1:10,4:33:15:0.286:2	./.	./.	./.	0/1:15,3:32:18:0.167:2	0/1:16,4:33:22:0.200:2	0/1:33,6:31:42:0.154:2	0/1:30,9:29:39:0.231:2	./.	./.
chr2	132552941	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,22:34:44:0.500:2	0/1:16,10:32:26:0.385:2	0/1:4,4:33:8:0.500:2	./.	./.	0/1:16,22:32:38:0.579:2	0/1:23,14:32:37:0.378:2	0/1:39,29:31:69:0.426:2	0/1:36,11:34:47:0.234:2	0/1:22,8:32:30:0.267:2	0/1:37,8:30:45:0.178:2
chr2	132905741	rs111770980	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:124,7:32:131:0.053:2	./.	./.	0/1:124,5:31:129:0.039:2	./.	./.	0/1:141,5:30:146:0.034:2	./.	./.	./.	0/1:131,8:32:139:0.058:2
chr2	132905758	rs62165773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,26:32:67:0.388:2	./.	./.	./.	./.	./.	./.
chr2	132905792	rs189049364	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:93,6:32:99:0.061:2	./.	./.	0/1:86,5:32:91:0.055:2	./.	./.	0/1:48,5:33:53:0.094:2	./.	0/1:82,4:33:86:0.047:2	./.	0/1:110,8:32:118:0.068:2
chr2	132911129	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:187,8:31:195:0.041:2	./.	./.	0/1:191,6:29:197:0.030:2	./.	0/1:189,8:28:197:0.041:2	0/1:189,7:29:196:0.036:2	0/1:195,5:30:200:0.025:2	./.	./.	./.
chr2	132911130	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:189,7:31:196:0.036:2	./.	./.	0/1:190,6:31:196:0.031:2	./.	0/1:189,8:30:197:0.041:2	0/1:190,7:29:197:0.036:2	0/1:193,5:28:198:0.025:2	./.	./.	./.
chr2	132911155	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.
chr2	132912296	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,14:31:178:0.079:2	0/1:153,19:32:172:0.110:2	0/1:51,12:32:63:0.190:2	0/1:158,16:33:174:0.092:2	0/1:173,16:32:189:0.085:2	0/1:165,22:33:187:0.118:2	0/1:170,20:32:190:0.105:2	0/1:151,39:32:190:0.205:2	0/1:168,5:31:173:0.029:2	0/1:160,25:33:185:0.135:2	0/1:166,8:28:174:0.046:2
chr2	132912312	rs199906464	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,7:34:164:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr2	132912316	rs200558206	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,12:33:168:0.071:2	0/1:147,20:32:167:0.120:2	0/1:49,16:31:65:0.246:2	0/1:157,6:30:163:0.037:2	0/1:166,14:32:180:0.078:2	0/1:143,22:32:165:0.133:2	0/1:166,15:30:182:0.083:2	0/1:145,37:31:183:0.203:2	./.	0/1:142,24:31:166:0.145:2	0/1:153,4:31:157:0.025:2
chr2	132912327	rs201025942	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:149,7:27:157:0.045:2	0/1:139,15:28:154:0.097:2	0/1:46,14:29:60:0.233:2	./.	0/1:139,7:27:146:0.048:2	0/1:121,17:27:138:0.123:2	0/1:148,8:26:156:0.051:2	0/1:113,26:26:140:0.187:2	./.	0/1:128,18:26:148:0.123:2	./.
chr2	132919099	rs199974298	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:67,4:30:72:0.056:2	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.
chr2	132919171	rs199695856	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:141,10:28:151:0.066:2	./.	./.	./.	0/1:134,9:27:143:0.063:2	0/1:152,5:30:157:0.032:2	0/1:138,14:30:152:0.092:2	0/1:170,8:28:178:0.045:2	0/1:172,10:28:182:0.055:2	./.	./.
chr2	132919192	rs111295191	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:147,8:32:155:0.052:2	./.	./.	./.	0/1:166,6:31:172:0.035:2	./.	0/1:159,11:31:170:0.065:2	0/1:190,8:28:198:0.040:2	0/1:181,9:32:190:0.047:2	./.	0/1:164,5:31:169:0.030:2
chr2	133014602	rs75245503	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.
chr2	133014612	rs74853538	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.
chr2	133174764	rs2241764	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,74:31:134:0.556:2	0/1:42,39:32:81:0.481:2	0/1:20,15:30:35:0.429:2	0/1:75,97:31:172:0.564:2	./.	0/1:68,77:31:145:0.531:2	0/1:94,68:32:162:0.420:2	./.	0/1:0,155:32:155:1.00:2	0/1:59,42:31:101:0.416:2	0/1:87,66:32:153:0.431:2
chr2	133174999	rs2241763	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,50:30:111:0.450:2	0/1:41,36:30:77:0.468:2	0/1:11,6:30:17:0.353:2	0/1:56,52:30:108:0.481:2	./.	0/1:92,74:29:167:0.446:2	0/1:107,85:29:192:0.443:2	./.	0/1:1,121:31:122:0.992:2	0/1:63,46:30:109:0.422:2	0/1:47,62:30:110:0.569:2
chr2	133403820	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.	./.
chr2	133489401	rs17397142	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,82:32:159:0.516:2	./.	./.	./.	0/1:97,69:32:166:0.416:2	./.	0/1:60,56:32:116:0.483:2	./.
chr2	133489601	rs56284623	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:22,42:32:64:0.656:2	./.	./.	./.	./.	./.	./.	./.
chr2	133538651	rs72989577	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,85:32:190:0.447:2	./.	./.	./.
chr2	133539566	rs6730282	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,82:31:188:0.436:2	0/1:86,68:31:154:0.442:2	0/1:23,17:31:42:0.425:2	0/1:0,179:30:179:1.00:2	0/1:103,85:30:188:0.452:2	0/1:120,78:30:198:0.394:2	0/1:93,100:30:194:0.518:2	0/1:0,185:31:185:1.00:2	./.	0/1:92,87:31:179:0.486:2	./.
chr2	133540605	rs13016342	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,172:31:173:0.994:2	./.	./.	./.
chr2	133541107	rs16841277	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,94:30:174:0.540:2	0/1:57,76:31:133:0.571:2	0/1:7,8:30:15:0.533:2	0/1:3,179:29:182:0.984:2	0/1:71,61:29:132:0.462:2	./.	0/1:80,84:29:164:0.512:2	./.	./.	0/1:75,97:30:172:0.564:2	./.
chr2	133541444	rs12691829	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,54:31:85:0.635:2	0/1:21,36:30:57:0.632:2	./.	0/1:1,74:30:75:0.987:2	0/1:24,14:31:38:0.368:2	0/1:54,47:30:101:0.465:2	0/1:11,27:30:38:0.711:2	0/1:0,73:30:73:1.00:2	./.	0/1:34,42:31:77:0.553:2	./.
chr2	133541454	rs12691830	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,59:33:92:0.641:2	0/1:27,40:32:67:0.597:2	0/1:5,3:32:8:0.375:2	0/1:1,90:32:91:0.989:2	0/1:28,17:31:45:0.378:2	0/1:61,52:32:113:0.460:2	0/1:14,35:33:49:0.714:2	0/1:0,94:33:94:1.00:2	./.	0/1:44,49:33:93:0.527:2	./.
chr2	133541575	rs12611515	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:29:56:0.429:2	./.	0/1:1,61:31:62:0.984:2	./.	0/1:38,27:32:65:0.415:2	./.
chr2	133542014	rs12616282	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,56:29:123:0.455:2	0/1:39,30:30:69:0.435:2	0/1:4,9:30:13:0.692:2	0/1:0,95:30:95:1.00:2	0/1:41,32:28:73:0.438:2	0/1:43,40:29:84:0.482:2	0/1:62,37:29:99:0.374:2	0/1:0,88:29:88:1.00:2	./.	0/1:63,35:30:98:0.357:2	./.
chr2	133542545	rs10191147	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:31:62:0.387:2	./.	0/1:1,56:32:57:0.982:2	./.	./.	./.
chr2	133542574	rs61995744	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,23:32:57:0.404:2	0/1:12,26:31:38:0.684:2	0/1:6,6:30:12:0.500:2	0/1:4,76:31:80:0.950:2	0/1:42,22:31:64:0.344:2	./.	0/1:46,36:31:82:0.439:2	./.	./.	0/1:18,32:31:50:0.640:2	./.
chr2	133542585	rs17325719	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,84:32:85:0.988:2	./.	./.	./.
chr2	133542860	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,12:30:139:0.086:2	./.	./.	./.	./.	./.	./.
chr2	133554288	rs1868076	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,8:32:29:0.276:2	0/1:12,9:31:21:0.429:2	./.	0/1:0,45:33:45:1.00:2	0/1:17,7:33:25:0.292:2	0/1:20,17:32:37:0.459:2	0/1:17,15:32:32:0.469:2	0/1:0,32:33:32:1.00:2	./.	0/1:20,20:33:40:0.500:2	./.
chr2	135206340	rs2230908	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,82:30:150:0.547:2	./.	0/1:65,85:30:151:0.567:2	./.	./.
chr2	135470864	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,4:30:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	135711516	rs3814355	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,24:31:60:0.400:2	0/1:36,20:32:56:0.357:2	0/1:0,4:31:4:1.00:2	0/1:40,16:30:56:0.286:2	0/1:20,13:30:33:0.394:2	0/1:0,53:29:53:1.00:2	0/1:33,18:30:51:0.353:2	0/1:29,23:30:52:0.442:2	0/1:0,54:31:54:1.00:2	0/1:28,30:30:58:0.517:2	0/1:42,30:31:72:0.417:2
chr2	135711657	rs3814354	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,25:31:52:0.481:2	0/1:31,15:32:46:0.326:2	0/1:0,11:31:11:1.00:2	0/1:32,32:31:64:0.500:2	0/1:36,31:31:67:0.463:2	0/1:1,65:30:66:0.985:2	0/1:67,42:31:109:0.385:2	0/1:36,50:31:86:0.581:2	0/1:0,72:32:72:1.00:2	0/1:27,33:31:60:0.550:2	0/1:49,26:31:75:0.347:2
chr2	135738715	rs56284052	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	135740876	rs60969462	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,40:30:81:0.494:2	0/1:27,27:31:54:0.500:2	./.	./.	0/1:42,28:32:70:0.400:2	0/1:53,44:32:97:0.454:2	./.	./.	0/1:68,56:32:124:0.452:2	0/1:48,41:31:89:0.461:2	./.
chr2	135745129	rs16831235	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,49:32:94:0.521:2	0/1:50,42:31:92:0.457:2	./.	./.	./.	0/1:116,62:32:179:0.348:2
chr2	135745304	rs140022497	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.
chr2	135745392	rs11888766	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,21:32:43:0.488:2	0/1:13,7:32:20:0.350:2	./.	./.	0/1:11,12:31:23:0.522:2	0/1:18,14:31:32:0.438:2	./.	./.	0/1:18,10:32:28:0.357:2	0/1:13,19:31:32:0.594:2	./.
chr2	135745545	rs11899779	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:81,61:32:143:0.430:2	0/1:51,44:32:95:0.463:2	./.	./.	0/1:40,69:31:109:0.633:2	0/1:61,82:31:143:0.573:2	./.	0/1:147,7:30:154:0.045:2	0/1:97,73:33:170:0.429:2	0/1:72,60:32:132:0.455:2	./.
chr2	135745722	rs10928526	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,15:33:37:0.405:2	0/1:14,15:32:29:0.517:2	./.	./.	0/1:6,16:31:22:0.727:2	0/1:16,22:32:38:0.579:2	./.	./.	0/1:23,20:33:43:0.465:2	0/1:13,14:32:27:0.519:2	./.
chr2	135781035	rs16831256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,53:33:129:0.411:2
chr2	135887570	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:36:123:0.041:2	./.	./.	./.
chr2	135893372	rs10445686	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:63,43:32:106:0.406:2	0/1:44,19:32:63:0.302:2	./.	0/1:41,29:33:70:0.414:2	./.	0/1:49,42:34:91:0.462:2	./.	./.
chr2	135911422	rs17261772	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,21:28:54:0.389:2	0/1:31,20:28:51:0.392:2	0/1:0,5:28:5:1.00:2	0/1:45,30:29:75:0.400:2	0/1:28,23:28:51:0.451:2	0/1:26,33:29:59:0.559:2	0/1:30,33:29:63:0.524:2	./.	0/1:0,81:29:81:1.00:2	./.	0/1:49,33:28:82:0.402:2
chr2	135960423	rs187035401	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.
chr2	135965376	rs7578111	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:27:51:0.451:2
chr2	135988127	rs59900519	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:65,70:33:135:0.519:2
chr2	135988186	rs58917764	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,104:32:189:0.556:2
chr2	135988416	rs935615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:33:181:0.448:2
chr2	136107663	rs183525970	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,30:32:71:0.423:2	./.	./.	./.	./.	./.
chr2	136107777	rs61744510	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:31:29:0.552:2
chr2	136148401	rs2043757	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:23:37:0.432:2
chr2	136148402	rs2043758	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:28:35:0.457:2
chr2	136393658	rs961360	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,30:32:60:0.500:2	0/1:26,11:31:37:0.297:2	0/1:34,22:31:56:0.393:2	0/1:20,12:31:32:0.375:2	./.	0/1:23,30:32:53:0.566:2	./.	./.
chr2	136396300	rs2278731	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:27:13:0.385:2	0/1:12,7:29:19:0.368:2	0/1:10,8:30:18:0.444:2	0/1:6,7:29:13:0.538:2	./.	0/1:6,10:29:16:0.625:2	./.	./.
chr2	136396476	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,7:32:25:0.280:2	./.	./.	./.	./.	./.	./.	./.
chr2	136403048	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,57:31:107:0.533:2	./.	./.	./.	./.	./.
chr2	136407479	rs1446585	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,38:28:88:0.432:2	0/1:34,27:28:61:0.443:2	0/1:0,4:26:4:1.00:2	0/1:54,52:29:106:0.491:2	0/1:56,52:29:108:0.481:2	0/1:57,62:28:119:0.521:2	0/1:64,56:28:120:0.467:2	0/1:80,75:28:155:0.484:2	0/1:1,124:29:125:0.992:2	./.	0/1:53,59:28:112:0.527:2
chr2	136409574	rs2305165	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	0/1:84,51:30:135:0.378:2	./.	0/1:63,64:29:127:0.504:2
chr2	136511817	rs1050115	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,50:33:130:0.385:2	0/1:27,39:33:66:0.591:2	./.	0/1:53,49:33:102:0.480:2	./.	0/1:78,60:33:138:0.435:2	./.	0/1:67,69:33:136:0.507:2
chr2	136519456	rs201063365	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,93:32:189:0.492:2	./.	./.	./.	./.	./.
chr2	136537911	rs62170084	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:30:97:0.402:2	./.	./.	./.	./.	./.
chr2	136546061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,5:26:147:0.034:2	./.	./.	./.
chr2	136546110	rs2278544	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:30:65:1.00:2	0/1:1,28:30:29:0.966:2	0/1:5,8:31:13:0.615:2	0/1:47,46:30:94:0.495:2	0/1:65,43:30:108:0.398:2	0/1:48,39:30:87:0.448:2	0/1:72,48:30:120:0.400:2	0/1:1,107:30:108:0.991:2	./.	0/1:1,58:28:59:0.983:2	./.
chr2	136555659	rs2322659	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:32,35:32:67:0.522:2	0/1:33,37:32:70:0.529:2	0/1:49,41:33:90:0.456:2	0/1:53,41:33:94:0.436:2	0/1:52,54:32:106:0.509:2	./.	0/1:0,67:32:67:1.00:2	./.
chr2	136561557	rs2304371	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,58:32:58:1.00:2	0/1:6,7:28:13:0.538:2	0/1:63,51:31:114:0.447:2	0/1:77,83:31:160:0.519:2	0/1:0,116:31:116:1.00:2	0/1:89,72:32:161:0.447:2	0/1:0,126:31:126:1.00:2	0/1:68,52:33:120:0.433:2	0/1:0,100:32:100:1.00:2	0/1:63,64:32:127:0.504:2
chr2	136562472	rs3739022	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:30:18:0.611:2	./.	./.	0/1:76,47:30:123:0.382:2	./.	0/1:77,76:31:154:0.497:2	0/1:70,60:32:130:0.462:2	./.	0/1:65,61:30:126:0.484:2
chr2	136567524	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,62:32:127:0.488:2	./.	./.	./.
chr2	136575199	rs6719488	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,65:32:66:0.985:2	0/1:0,25:32:25:1.00:2	./.	0/1:59,41:33:100:0.410:2	0/1:46,60:31:106:0.566:2	0/1:44,33:31:77:0.429:2	0/1:40,46:32:86:0.535:2	0/1:41,39:31:81:0.488:2	./.	0/1:0,66:32:66:1.00:2	./.
chr2	136575534	rs4954449	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,25:31:25:1.00:2
chr2	136590746	rs3754689	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:17,16:29:33:0.485:2	0/1:25,17:30:42:0.405:2	./.	0/1:21,12:30:33:0.364:2	./.	0/1:26,14:32:40:0.350:2	./.	0/1:40,25:31:65:0.385:2
chr2	136594158	rs2236783	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,103:32:104:0.990:2	0/1:1,74:32:75:0.987:2	./.	0/1:107,85:32:192:0.443:2	0/1:90,65:32:155:0.419:2	0/1:119,70:31:189:0.370:2	0/1:89,74:32:163:0.454:2	0/1:105,84:32:189:0.444:2	./.	0/1:5,168:32:173:0.971:2	./.
chr2	136605754	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,20:27:36:0.556:2	./.	./.	./.	./.	./.
chr2	136623841	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:32:74:0.081:2	./.	./.	./.	./.
chr2	136690424	rs567363	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,3:34:26:0.115:2	0/1:11,4:32:15:0.267:2	./.	0/1:12,4:24:16:0.250:2	./.	0/1:18,6:35:24:0.250:2	./.	0/1:20,5:34:25:0.200:2
chr2	136690425	rs371309040	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:32:24:0.500:2	0/1:9,6:31:15:0.400:2	./.	0/1:6,10:31:16:0.625:2	./.	0/1:15,9:32:24:0.375:2	./.	0/1:14,10:33:24:0.417:2
chr2	136719004	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:28:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	136873084	rs2228014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	136873549	rs2680880	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,12:30:28:0.429:2	0/1:4,7:30:11:0.636:2	./.	./.	0/1:0,26:30:26:1.00:2	0/1:14,11:31:25:0.440:2	0/1:10,5:32:15:0.333:2	./.	./.	0/1:0,17:31:17:1.00:2	./.
chr2	137814138	rs60939389	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:32:22:1.00:2	./.	./.	0/1:107,44:32:151:0.291:2	./.	./.	0/1:88,97:33:185:0.524:2	./.	./.
chr2	137814477	rs17727482	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,141:29:144:1.00:2	0/1:0,82:30:82:1.00:2	./.	./.	0/1:84,46:29:130:0.354:2	./.	./.	./.	./.	0/1:0,137:30:137:1.00:2	0/1:0,154:29:154:1.00:2
chr2	137917922	rs4954474	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,142:31:145:0.986:2	0/1:0,70:31:70:1.00:2	./.	./.	./.	./.	0/1:95,81:31:176:0.460:2	0/1:2,170:31:172:0.988:2	./.	0/1:0,143:31:143:1.00:2	0/1:77,75:30:152:0.493:2
chr2	137990678	rs16838413	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,28:31:79:0.354:2	./.	./.
chr2	138375972	rs17692792	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,31:32:84:0.369:2	./.	0/1:48,30:32:78:0.385:2	./.	./.	./.	0/1:40,40:32:80:0.500:2	./.
chr2	138420996	rs10206850	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,40:33:86:0.465:2	0/1:37,19:33:56:0.339:2	0/1:7,12:33:19:0.632:2	0/1:48,52:33:100:0.520:2	0/1:36,32:33:68:0.471:2	0/1:33,51:32:84:0.607:2	0/1:40,40:33:80:0.500:2	0/1:0,112:33:112:1.00:2	0/1:47,52:34:99:0.525:2	0/1:39,36:34:75:0.480:2	0/1:58,63:34:121:0.521:2
chr2	138434130	rs61750799	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,22:34:53:0.415:2	./.	./.	0/1:27,20:33:47:0.426:2	./.	0/1:32,25:34:57:0.439:2	./.	./.
chr2	138759649	rs11558538	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,92:30:193:0.479:2	./.	./.	0/1:96,90:31:186:0.484:2	./.	0/1:107,87:31:194:0.448:2
chr2	139308127	rs35257103	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:31:131:0.427:2	./.	./.
chr2	139326614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr2	139429068	rs10803570	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,28:32:66:0.424:2	0/1:31,21:31:52:0.404:2	0/1:0,8:30:8:1.00:2	0/1:43,26:31:69:0.377:2	0/1:0,62:31:62:1.00:2	0/1:1,65:31:66:0.985:2	0/1:29,30:32:59:0.508:2	0/1:52,55:31:107:0.514:2	0/1:51,34:33:85:0.400:2	0/1:2,56:31:58:0.966:2	./.
chr2	141032088	rs1386356	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,39:31:85:0.459:2	0/1:26,25:32:51:0.490:2	0/1:2,12:31:14:0.857:2	./.	0/1:2,114:31:116:0.983:2	0/1:0,88:31:88:1.00:2	0/1:92,58:31:150:0.387:2	0/1:0,131:32:131:1.00:2	0/1:77,45:32:122:0.369:2	./.	0/1:56,48:32:104:0.462:2
chr2	141214097	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,7:33:48:0.146:2	./.	./.	./.	./.
chr2	141242918	rs34488772	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:31:39:1.00:2	./.	./.	./.
chr2	141245204	rs74789055	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,49:32:53:0.925:2	./.	./.	./.
chr2	141259283	rs35296183	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:30:43:0.535:2	0/1:0,28:31:28:1.00:2	./.	./.	./.	./.	./.	./.
chr2	141259376	rs35164907	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:29:42:0.548:2	0/1:1,34:31:35:0.971:2	./.	./.	0/1:0,43:30:43:1.00:2	./.	./.	./.
chr2	141260668	rs4444457	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,32:33:81:0.395:2	0/1:28,22:32:50:0.440:2	0/1:0,6:32:6:1.00:2	0/1:43,45:32:88:0.511:2	0/1:2,82:31:84:0.976:2	0/1:54,40:31:94:0.426:2	0/1:51,41:33:92:0.446:2	0/1:2,82:31:84:0.976:2	./.	./.	./.
chr2	141274576	rs4954672	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,69:32:72:0.958:2	0/1:2,46:33:48:0.958:2	0/1:0,11:32:11:1.00:2	0/1:0,58:33:58:1.00:2	0/1:1,38:32:39:0.974:2	./.	0/1:0,47:33:47:1.00:2	0/1:48,52:33:100:0.520:2	0/1:1,86:34:87:0.989:2	0/1:0,60:32:61:1.00:2	0/1:0,97:33:97:1.00:2
chr2	141457985	rs13431727	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:30:36:0.389:2	./.	./.	./.	./.	./.	./.
chr2	141458166	rs376156015	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:32:63:0.349:2	0/1:27,15:32:42:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	141571329	rs3749010	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,53:28:126:0.421:2	0/1:43,48:28:91:0.527:2	0/1:13,8:28:21:0.381:2	0/1:63,52:28:115:0.452:2	0/1:0,81:28:81:1.00:2	0/1:0,92:28:92:1.00:2	0/1:0,102:28:102:1.00:2	0/1:3,90:28:93:0.968:2	0/1:0,115:29:115:1.00:2	0/1:0,90:29:90:1.00:2	0/1:70,47:28:117:0.402:2
chr2	141625828	rs200955532	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,7:14:33:0.212:2	./.	0/1:28,5:20:33:0.152:2	./.	0/1:31,8:19:39:0.205:2	./.	0/1:14,8:23:22:0.364:2	0/1:23,7:20:30:0.233:2
chr2	141707868	rs6748626	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,31:30:57:0.544:2	0/1:22,25:31:47:0.532:2	0/1:3,9:32:12:0.750:2	./.	./.	./.	0/1:64,62:31:126:0.492:2	./.	./.	./.	./.
chr2	141709419	rs1429348	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,70:33:159:0.440:2	0/1:51,21:33:72:0.292:2	0/1:11,14:30:25:0.560:2	0/1:108,89:33:197:0.452:2	0/1:1,160:33:161:0.994:2	0/1:0,190:33:190:1.00:2	0/1:107,93:33:200:0.465:2	./.	0/1:111,86:33:197:0.437:2	0/1:2,134:33:136:0.985:2	0/1:3,168:33:171:0.982:2
chr2	141751592	rs13007735	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,78:32:79:0.987:2	0/1:1,43:32:44:0.977:2	./.	0/1:2,133:31:135:0.985:2	./.	0/1:48,47:31:95:0.495:2	./.	0/1:0,163:32:163:1.00:2	0/1:43,38:32:81:0.469:2	0/1:0,73:32:73:1.00:2	0/1:50,55:32:105:0.524:2
chr2	141773397	rs78806080	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	0/1:19,31:31:50:0.620:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.
chr2	141773450	rs75995642	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:33:101:0.505:2	./.	./.	./.	./.
chr2	141806710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.	./.	./.
chr2	141816621	rs1525579	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,27:33:27:1.00:2
chr2	142238074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	142567910	rs12990449	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:29:13:0.615:2	0/1:91,60:30:151:0.397:2	./.	0/1:83,80:30:163:0.491:2	./.	0/1:84,76:28:160:0.475:2	0/1:1,150:30:151:0.993:2	0/1:80,61:29:141:0.433:2	0/1:6,136:29:142:0.958:2
chr2	143798189	rs9013	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,40:30:91:0.440:2	./.	0/1:40,41:30:81:0.506:2	0/1:24,24:31:48:0.500:2	0/1:32,39:30:71:0.549:2	0/1:48,41:30:89:0.461:2	./.	./.
chr2	143913175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	144194565	rs17230746	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,32:31:84:0.381:2	./.	0/1:34,27:31:61:0.443:2	./.	0/1:31,26:32:57:0.456:2	./.	./.	./.
chr2	144699903	rs28521602	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,44:31:76:0.579:2	./.	./.	0/1:46,43:31:89:0.483:2	./.	./.	./.
chr2	144699925	rs79904664	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,43:30:110:0.391:2	./.	./.	./.	./.	./.
chr2	144700007	rs62167033	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,22:32:52:0.423:2	./.	./.	0/1:36,51:31:87:0.586:2	./.	./.	./.
chr2	144700126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.	./.
chr2	144700186	rs12612842	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,30:31:84:0.357:2	./.
chr2	144899559	rs3731958	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,36:32:76:0.474:2	0/1:28,16:33:44:0.364:2	0/1:6,5:31:11:0.455:2	0/1:0,71:31:71:1.00:2	0/1:42,25:29:67:0.373:2	0/1:0,72:31:72:1.00:2	./.	./.	0/1:66,50:33:116:0.431:2	0/1:43,27:32:70:0.386:2	0/1:0,108:32:108:1.00:2
chr2	145147416	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.
chr2	145154026	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr2	145161665	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,32:32:122:0.262:2	./.	./.	./.	./.	./.	./.	./.
chr2	145187383	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,8:19:123:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,11:16:148:0.075:2
chr2	145188171	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.
chr2	148657117	rs1128919	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:31:12:0.500:2	0/1:22,11:30:33:0.333:2	0/1:8,14:33:22:0.636:2	0/1:24,22:32:46:0.478:2	0/1:2,22:33:24:0.917:2	./.	./.	0/1:16,21:33:37:0.568:2	0/1:24,23:33:47:0.489:2
chr2	148676144	rs371059184	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,16:14:50:0.327:2	./.	./.	0/1:33,25:13:58:0.431:2	0/1:30,20:13:50:0.400:2	0/1:28,13:14:42:0.317:2	0/1:34,22:13:56:0.393:2	0/1:28,21:14:49:0.429:2	./.	./.	0/1:32,13:14:45:0.289:2
chr2	148716428	rs2307394	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:55,40:33:95:0.421:2	0/1:52,57:32:109:0.523:2	0/1:42,42:32:84:0.500:2	0/1:2,110:33:112:0.982:2	./.	./.	0/1:63,49:33:112:0.438:2	0/1:60,51:32:111:0.459:2
chr2	148730367	rs2307397	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,73:33:137:0.533:2	./.	./.
chr2	148731020	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,76:32:190:0.400:2	./.	./.	./.	./.
chr2	149227262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr2	149227439	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.
chr2	149227647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.
chr2	149241329	rs188449443	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,33:31:62:0.532:2	./.	./.	./.	./.	./.	./.
chr2	149449185	rs6724787	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,28:30:69:0.412:2	0/1:17,28:30:45:0.622:2	0/1:0,4:31:4:1.00:2	0/1:45,41:30:86:0.477:2	0/1:2,47:29:49:0.959:2	./.	0/1:0,42:29:42:1.00:2	0/1:0,51:29:51:1.00:2	0/1:1,70:31:71:0.986:2	0/1:42,29:30:71:0.408:2	./.
chr2	149528844	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:34:184:0.022:2	./.	./.	./.
chr2	149639422	rs7426241	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:32:9:0.444:2	0/1:34,8:31:42:0.190:2	0/1:31,4:33:35:0.114:2	0/1:51,12:31:63:0.190:2	0/1:32,8:30:40:0.200:2	0/1:59,6:32:65:0.092:2	0/1:62,6:31:68:0.088:2	0/1:36,22:31:58:0.379:2	./.
chr2	149799216	rs61734995	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	0/1:84,77:29:161:0.478:2	./.	./.	./.
chr2	149806388	rs60169973	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,55:32:133:0.414:2	./.	./.	./.
chr2	150426637	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:147:0.027:2	./.	./.	./.	./.	./.
chr2	150432976	rs11545261	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,63:32:145:0.434:2	0/1:76,48:32:124:0.387:2	0/1:0,27:32:27:1.00:2	0/1:0,189:31:189:1.00:2	0/1:0,120:31:120:1.00:2	0/1:92,106:31:198:0.535:2	0/1:0,138:31:138:1.00:2	0/1:3,192:31:195:0.985:2	0/1:0,185:32:185:1.00:2	0/1:0,155:32:155:1.00:2	0/1:1,185:31:186:0.995:2
chr2	150438708	rs61750442	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:29:87:0.471:2	0/1:27,17:30:44:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	150438770	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.
chr2	151326514	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:30:131:0.031:2	./.	./.	./.	./.
chr2	152117957	rs2271813	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,8:28:27:0.296:2	./.	0/1:109,73:26:183:0.401:2	./.	./.	./.	./.	0/1:0,106:27:107:1.00:2	./.
chr2	152118271	rs55775354	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,29:30:61:0.475:2	0/1:21,16:31:37:0.432:2	0/1:2,5:31:7:0.714:2	./.	./.	0/1:46,56:30:103:0.549:2	0/1:4,58:30:62:0.935:2	0/1:1,115:31:116:0.991:2	0/1:47,40:32:87:0.460:2	./.	0/1:21,33:29:54:0.611:2
chr2	152118275	rs56376752	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,28:32:59:0.475:2	0/1:21,15:32:36:0.417:2	0/1:2,5:33:7:0.714:2	./.	./.	0/1:44,55:32:99:0.556:2	0/1:5,54:32:59:0.915:2	0/1:1,112:32:113:0.991:2	0/1:48,39:33:87:0.448:2	./.	0/1:21,31:31:52:0.596:2
chr2	152132130	rs289834	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,17:31:65:0.262:2	0/1:35,28:30:63:0.444:2	./.	./.	./.	0/1:46,52:33:98:0.531:2	./.	0/1:69,64:33:133:0.481:2
chr2	152135415	rs11551174	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,30:32:63:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr2	152138522	rs3771886	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,21:33:56:0.382:2	0/1:25,7:32:32:0.219:2	0/1:3,7:33:10:0.700:2	0/1:35,43:33:78:0.551:2	0/1:24,19:33:43:0.442:2	0/1:41,28:33:69:0.406:2	0/1:0,30:34:30:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,69:34:69:1.00:2	./.	0/1:1,77:32:78:0.987:2
chr2	152139416	rs1048135	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,58:33:108:0.537:2	0/1:22,29:32:51:0.569:2	./.	./.	./.	0/1:79,61:31:140:0.436:2	0/1:0,53:32:53:1.00:2	0/1:0,98:32:98:1.00:2	0/1:76,63:32:139:0.453:2	./.	0/1:101,80:32:181:0.442:2
chr2	152220510	rs75961064	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,82:30:176:0.466:2	./.	./.	./.	./.	./.
chr2	152226570	rs1046668	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,14:28:28:0.500:2	0/1:11,3:30:14:0.214:2	./.	0/1:8,15:30:23:0.652:2	./.	0/1:13,18:29:31:0.581:2	./.	0/1:15,12:30:27:0.444:2	./.	./.	./.
chr2	152226616	rs78264792	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:33:47:0.426:2	./.	./.	./.	./.	./.
chr2	152235888	rs75295519	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,58:31:185:0.314:2	./.	./.	./.	./.	./.	./.	./.
chr2	152311570	rs2444263	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,68:33:124:0.548:2	0/1:37,43:33:80:0.538:2	0/1:7,9:33:16:0.563:2	./.	0/1:72,62:32:134:0.463:2	0/1:91,86:32:177:0.486:2	0/1:0,176:33:176:1.00:2	0/1:0,175:33:175:1.00:2	0/1:111,80:33:191:0.419:2	0/1:97,49:32:146:0.336:2	0/1:96,84:33:180:0.467:2
chr2	152311612	rs61750444	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,36:32:84:0.429:2	./.	./.	./.	./.	./.	./.
chr2	152314385	rs16830047	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,29:32:57:0.509:2	0/1:20,23:32:43:0.535:2	./.	./.	0/1:23,13:31:36:0.361:2	./.	0/1:0,59:31:59:1.00:2	./.	./.	0/1:38,18:31:56:0.321:2	./.
chr2	152319957	rs189603165	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:29:22:0.318:2	./.	./.	./.	./.	./.	./.	./.
chr2	152320118	rs2123465	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,11:32:26:0.423:2	0/1:17,8:32:25:0.320:2	./.	./.	0/1:9,8:31:17:0.471:2	0/1:30,17:30:47:0.362:2	0/1:0,15:31:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:9,13:32:22:0.591:2	./.	0/1:23,14:32:37:0.378:2
chr2	152320128	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.
chr2	152321091	rs61748233	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:30:35:0.486:2	./.	./.	./.	./.	./.	./.
chr2	152322095	rs2444257	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:31:55:1.00:2	0/1:0,34:31:34:1.00:2	0/1:2,5:30:7:0.714:2	./.	0/1:32,18:29:50:0.360:2	0/1:33,28:29:62:0.459:2	0/1:2,35:30:37:0.946:2	0/1:0,50:30:50:1.00:2	0/1:47,26:30:73:0.356:2	0/1:26,18:30:44:0.409:2	0/1:32,42:31:74:0.568:2
chr2	152322115	rs189342229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,53:30:86:0.616:2	./.	./.	./.	./.	./.	./.	./.
chr2	152331418	rs1065177	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,61:32:61:1.00:2	0/1:0,35:32:35:1.00:2	0/1:4,5:33:9:0.556:2	./.	0/1:21,25:32:46:0.543:2	0/1:26,43:32:69:0.623:2	0/1:0,51:31:51:1.00:2	0/1:0,74:32:74:1.00:2	0/1:40,35:33:76:0.467:2	0/1:35,37:32:72:0.514:2	0/1:35,46:32:81:0.568:2
chr2	152346494	rs13031275	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,51:30:126:0.405:2	0/1:31,28:31:59:0.475:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	152346979	rs1061305	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:29:72:0.486:2	0/1:19,9:29:28:0.321:2	./.	./.	./.	0/1:38,31:28:69:0.449:2	./.	0/1:4,106:29:110:0.964:2	0/1:42,28:31:70:0.400:2	./.	0/1:50,36:28:86:0.419:2
chr2	152352843	rs7575451	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,54:33:107:0.505:2	0/1:34,44:32:78:0.564:2	./.	./.	0/1:36,37:32:73:0.507:2	0/1:61,60:32:121:0.496:2	0/1:0,88:33:88:1.00:2	0/1:0,143:32:143:1.00:2	0/1:74,63:33:137:0.460:2	0/1:60,54:32:114:0.474:2	0/1:75,70:33:145:0.483:2
chr2	152354173	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,3:31:35:0.086:2	./.	./.	./.	./.	./.	./.
chr2	152354200	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr2	152362003	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr2	152364589	rs41270201	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	152373006	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.
chr2	152382740	rs76664802	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,16:14:156:0.103:2	./.	./.	./.	./.
chr2	152382759	rs61730765	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,44:31:126:0.349:2	./.	./.	./.	./.	./.	./.
chr2	152385774	rs201979610	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,79:33:144:0.549:2	./.	./.
chr2	152387553	rs4664475	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:76,70:29:147:0.479:2	0/1:40,38:28:78:0.487:2	0/1:12,5:29:17:0.294:2	./.	./.	0/1:86,67:29:153:0.438:2	0/1:0,161:29:161:1.00:2	0/1:4,162:30:166:0.976:2	0/1:107,55:29:164:0.340:2	0/1:82,60:29:142:0.423:2	0/1:94,64:29:159:0.405:2
chr2	152389991	rs114218081	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,51:32:86:0.593:2	./.	./.	./.	./.	./.	./.
chr2	152406159	rs368883773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,76:31:139:0.547:2	./.
chr2	152408283	rs375307136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,83:33:129:0.643:2	./.
chr2	152410342	rs190336010	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,59:27:117:0.504:2	./.	./.	0/1:43,35:27:78:0.449:2	./.
chr2	152422076	rs2288210	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,41:32:99:0.414:2	0/1:27,30:31:57:0.526:2	0/1:5,13:32:18:0.722:2	./.	0/1:57,27:32:84:0.321:2	0/1:45,53:32:98:0.541:2	0/1:1,72:32:75:0.986:2	0/1:1,84:32:85:0.988:2	0/1:52,40:32:92:0.435:2	0/1:45,53:32:98:0.541:2	0/1:76,33:32:109:0.303:2
chr2	152422087	rs2288211	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,42:32:89:0.472:2	0/1:25,26:32:51:0.510:2	./.	./.	./.	./.	0/1:1,53:32:54:0.981:2	./.	./.	0/1:35,43:32:78:0.551:2	./.
chr2	152425801	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr2	152432311	rs33988153	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,22:28:56:0.393:2	0/1:8,16:29:24:0.667:2	./.	0/1:31,23:28:54:0.426:2	0/1:21,13:27:34:0.382:2	./.	./.	./.	0/1:17,36:29:53:0.679:2	0/1:18,13:30:31:0.419:2	0/1:37,22:28:59:0.373:2
chr2	152436012	rs199749747	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:133,58:30:191:0.304:2	0/1:128,45:30:173:0.260:2	./.	./.	./.	./.	0/1:75,114:30:189:0.603:2	./.	./.	0/1:136,58:31:194:0.299:2	./.
chr2	152436106	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,26:31:195:0.133:2	./.	./.	./.	./.	./.	./.
chr2	152438012	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.	0/1:182,8:29:190:0.042:2	./.	0/1:175,22:31:197:0.112:2	0/1:186,10:32:196:0.051:2	./.	0/1:184,11:32:195:0.056:2
chr2	152439037	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,18:30:99:0.182:2	./.	./.	./.	./.	./.
chr2	152439125	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:34:45:0.067:2	./.	./.	./.	./.	./.
chr2	152472538	rs372245772	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr2	152473911	rs149025191	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,64:33:160:0.400:2	./.	./.	./.	./.	./.	./.	0/1:102,63:33:165:0.382:2
chr2	152476028	rs10172023	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,15:33:26:0.577:2	0/1:149,4:33:153:0.026:2	./.	0/1:109,72:32:181:0.398:2	./.	0/1:0,174:33:174:1.00:2	0/1:79,93:33:172:0.541:2	./.	0/1:97,82:33:179:0.458:2
chr2	152483564	rs180847025	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:164:0.025:2	./.	./.	./.	./.
chr2	152484039	rs374760449	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:31:87:0.471:2	./.
chr2	152484226	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,6:32:139:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	152484301	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:138,6:30:144:0.042:2	./.	./.	0/1:151,6:29:157:0.038:2	./.	./.	./.	./.	./.	0/1:126,5:31:131:0.038:2	./.
chr2	152487705	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr2	152496526	rs6713162	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,22:32:51:0.431:2	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	0/1:30,27:33:57:0.474:2	./.
chr2	152496908	rs115784515	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:29:185:0.032:2
chr2	152497088	rs61730771	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:30:188:0.027:2	./.	./.	./.	0/1:72,100:32:172:0.581:2	0/1:178,6:31:184:0.033:2
chr2	152499143	rs35974308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,37:33:82:0.451:2	./.
chr2	152500371	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.	./.
chr2	152500449	rs13013209	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,86:32:181:0.475:2	0/1:76,62:32:138:0.449:2	0/1:0,36:32:36:1.00:2	0/1:112,82:33:194:0.423:2	./.	0/1:2,170:32:172:0.988:2	./.	0/1:6,174:32:180:0.967:2	0/1:92,97:33:189:0.513:2	./.	0/1:2,187:32:189:0.989:2
chr2	152500521	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,6:31:181:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	152500551	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,5:31:182:0.027:2	0/1:131,4:30:135:0.030:2	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.
chr2	152514521	rs140186806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.
chr2	152515683	rs75807392	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,39:29:113:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr2	152521096	rs10170273	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,36:32:106:0.343:2	./.	./.	./.	./.	0/1:50,41:33:91:0.451:2	0/1:37,22:32:59:0.373:2	./.
chr2	152527572	rs7426114	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,181:32:184:0.984:2	0/1:0,152:32:152:1.00:2	0/1:0,53:30:53:1.00:2	0/1:98,92:31:190:0.484:2	0/1:0,183:31:183:1.00:2	0/1:0,177:31:177:1.00:2	0/1:1,167:32:168:0.994:2	0/1:3,182:32:185:0.984:2	0/1:113,83:32:196:0.423:2	0/1:102,98:32:200:0.490:2	0/1:0,183:32:185:1.00:2
chr2	152527608	rs34577613	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,87:32:198:0.439:2	./.	./.	./.	./.	./.	0/1:104,77:32:181:0.425:2	./.
chr2	152527636	rs34800215	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,78:32:182:0.429:2	./.
chr2	152528910	rs35654397	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,86:33:199:0.432:2
chr2	152530992	rs115986826	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,26:32:78:0.333:2	./.	./.	./.	./.	./.	./.
chr2	152531077	rs6711382	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,99:33:100:0.990:2	0/1:1,62:33:63:0.984:2	0/1:0,17:33:17:1.00:2	0/1:55,59:33:114:0.518:2	0/1:0,93:33:93:1.00:2	0/1:2,100:33:102:0.980:2	0/1:0,102:33:102:1.00:2	0/1:4,124:33:128:0.969:2	0/1:1,104:33:105:0.990:2	0/1:33,54:33:87:0.621:2	0/1:1,99:33:100:0.990:2
chr2	152536498	rs6735208	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:32:136:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,25:31:25:1.00:2	0/1:73,83:31:156:0.532:2	0/1:1,136:31:137:0.993:2	0/1:0,132:31:132:1.00:2	0/1:2,128:32:130:0.985:2	0/1:4,122:32:126:0.968:2	0/1:78,68:32:146:0.466:2	0/1:80,69:32:149:0.463:2	0/1:76,76:32:152:0.500:2
chr2	152539234	rs75073923	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,7:22:81:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,15:19:120:0.126:2
chr2	152541487	rs114959904	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,47:31:134:0.351:2	./.	./.	./.	./.	./.
chr2	152551071	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	0/1:177,11:30:188:0.059:2	./.	./.	./.
chr2	152551084	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,11:29:179:0.061:2	./.	./.	./.
chr2	152551105	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:104,5:34:109:0.046:2	./.	./.	./.	./.	./.	0/1:87,5:34:92:0.054:2	0/1:131,11:32:142:0.077:2	./.	./.	./.
chr2	152551140	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:33:43:0.070:2	./.	./.	./.	./.
chr2	152573981	rs4611637	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:30:89:1.00:2	0/1:1,45:30:46:0.978:2	0/1:0,11:31:11:1.00:2	0/1:59,47:30:106:0.443:2	0/1:0,69:29:69:1.00:2	0/1:0,96:30:96:1.00:2	0/1:1,81:30:82:0.988:2	0/1:1,111:30:112:0.991:2	0/1:70,55:31:125:0.440:2	0/1:42,46:30:88:0.523:2	0/1:76,61:29:137:0.445:2
chr2	152579983	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:33:42:0.095:2	./.	./.
chr2	152663365	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.
chr2	152663406	rs61737675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,54:32:111:0.486:2	./.
chr2	152698480	rs1805028	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,67:29:128:0.523:2	./.	./.	./.	./.	./.	./.	./.
chr2	152717331	rs61736804	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:29:52:0.538:2	./.
chr2	153004736	rs72864741	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:70,56:31:126:0.444:2	0/1:27,30:32:57:0.526:2	./.	./.	0/1:97,69:30:166:0.416:2	0/1:98,73:30:171:0.427:2	0/1:95,82:30:177:0.463:2	./.	0/1:118,77:32:195:0.395:2	0/1:104,83:31:187:0.444:2	./.
chr2	153192192	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	153378459	rs4664114	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,28:30:52:0.538:2	0/1:12,17:30:29:0.586:2	./.	0/1:2,78:31:80:0.975:2	0/1:0,39:31:39:1.00:2	0/1:0,65:31:65:1.00:2	0/1:22,17:31:40:0.436:2	0/1:35,44:30:79:0.557:2	0/1:1,72:31:73:0.986:2	./.	0/1:0,93:31:93:1.00:2
chr2	153405594	rs1155779	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,48:31:48:1.00:2	0/1:21,15:30:36:0.417:2	./.	0/1:36,16:31:52:0.308:2	0/1:29,39:31:68:0.574:2	0/1:38,41:32:79:0.519:2	0/1:41,14:32:55:0.255:2	0/1:38,29:32:67:0.433:2
chr2	153415244	rs35066174	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:4,16:32:20:0.800:2	0/1:7,3:31:10:0.300:2	0/1:11,6:31:17:0.353:2	./.	0/1:1,15:29:16:0.938:2	0/1:18,16:33:34:0.471:2	0/1:3,19:32:22:0.864:2	0/1:8,15:30:23:0.652:2
chr2	153435434	rs16831399	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2
chr2	153468107	rs35776654	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	0/1:47,26:31:73:0.356:2	./.	0/1:50,18:31:68:0.265:2	./.	0/1:21,27:32:48:0.563:2	./.
chr2	153476105	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	./.	./.	./.
chr2	153514496	rs372511875	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2	./.	./.	./.	./.
chr2	153532963	rs186386177	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,81:31:162:0.500:2	./.	./.	./.	./.
chr2	153533260	rs11544718	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,87:32:190:0.458:2	./.
chr2	153574092	rs2293680	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.
chr2	154996952	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,3:36:62:0.048:2	./.	./.	./.
chr2	155099399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2
chr2	155555878	rs3111033	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:31:42:0.571:2	./.	./.	./.	./.	./.
chr2	155555879	rs141745529	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:30:35:0.457:2
chr2	155711357	rs17642086	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,24:30:69:0.348:2	0/1:30,20:28:50:0.400:2	./.	0/1:22,31:30:53:0.585:2	./.	./.	0/1:35,22:27:57:0.386:2	./.	0/1:55,27:30:82:0.329:2	0/1:23,40:29:63:0.635:2	0/1:32,51:29:83:0.614:2
chr2	157186262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	157406249	rs2116665	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,26:31:69:0.377:2	0/1:40,25:31:65:0.385:2	0/1:5,6:31:11:0.545:2	0/1:2,109:31:111:0.982:2	0/1:0,90:31:90:1.00:2	0/1:68,52:31:120:0.433:2	0/1:74,61:31:135:0.452:2	0/1:1,114:31:115:0.991:2	0/1:0,92:32:92:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,81:32:81:1.00:2
chr2	157425972	rs17266469	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,30:30:64:0.469:2	./.	./.	./.	./.	./.	./.
chr2	158115129	rs61748237	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:25,21:30:46:0.457:2	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	0/1:34,17:30:51:0.333:2	0/1:35,24:32:59:0.407:2	./.	0/1:17,28:30:45:0.622:2
chr2	158140806	rs6759356	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,42:31:104:0.404:2	./.	0/1:60,55:32:115:0.478:2	0/1:62,47:32:109:0.431:2	./.	./.
chr2	158157361	rs3214040	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,42:32:80:0.525:2	0/1:15,27:31:42:0.643:2	0/1:0,3:30:3:1.00:2	0/1:1,89:31:90:0.989:2	0/1:0,134:31:135:1.00:2	0/1:0,102:31:102:1.00:2	0/1:50,42:31:92:0.457:2	0/1:0,93:31:93:1.00:2	0/1:63,56:33:119:0.471:2	0/1:0,80:32:80:1.00:2	0/1:0,111:32:111:1.00:2
chr2	158272449	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,37:29:125:0.296:2	0/1:40,17:29:57:0.298:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	158291188	rs11904180	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,51:32:110:0.464:2	0/1:49,34:31:83:0.410:2	0/1:0,11:32:11:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,122:32:123:0.992:2	0/1:0,127:33:127:1.00:2	0/1:1,122:31:123:0.992:2	0/1:0,179:32:179:1.00:2
chr2	158390468	rs7594480	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:32:22:0.318:2	0/1:7,10:32:17:0.588:2	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.
chr2	158390503	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:32:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	158443723	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,82:30:175:0.469:2	./.	./.	./.	./.	./.
chr2	158443889	rs4556933	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:31:13:0.692:2	0/1:63,68:30:131:0.519:2	0/1:68,75:30:143:0.524:2	0/1:81,59:30:140:0.421:2	0/1:79,46:30:125:0.368:2	0/1:85,78:30:163:0.479:2	0/1:0,149:31:149:1.00:2	./.	0/1:50,96:30:146:0.658:2
chr2	158626980	rs1146031	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:30:52:0.981:2	0/1:0,43:32:43:1.00:2	0/1:1,10:31:11:0.909:2	0/1:2,78:31:80:0.975:2	0/1:0,63:29:63:1.00:2	0/1:31,45:31:76:0.592:2	0/1:0,88:31:88:1.00:2	0/1:2,92:31:94:0.979:2	0/1:0,76:32:76:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,66:30:66:1.00:2
chr2	158636910	rs2227861	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,31:33:52:0.596:2	0/1:22,23:32:45:0.511:2	0/1:0,10:33:10:1.00:2	0/1:0,82:32:82:1.00:2	0/1:39,27:32:66:0.409:2	0/1:39,45:32:84:0.536:2	0/1:0,81:32:81:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,77:33:77:1.00:2	0/1:38,34:33:72:0.472:2	0/1:0,76:33:76:1.00:2
chr2	159033054	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:29:197:0.025:2	./.	./.	./.
chr2	159166069	rs7559772	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:33:131:1.00:2	0/1:1,78:33:79:0.987:2	0/1:0,17:32:17:1.00:2	0/1:66,71:33:137:0.518:2	0/1:1,110:32:111:0.991:2	0/1:0,124:32:124:1.00:2	0/1:56,81:33:137:0.591:2	0/1:0,140:33:140:1.00:2	0/1:0,160:34:160:1.00:2	0/1:59,53:33:113:0.473:2	0/1:0,155:34:155:1.00:2
chr2	159195282	rs16842890	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:31:53:0.321:2
chr2	159195562	rs61746487	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:30:131:0.427:2	./.	./.	./.
chr2	159196771	rs12620556	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,78:30:195:0.400:2
chr2	159201754	rs4664950	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,74:30:189:0.392:2	./.	./.	./.	./.	./.	0/1:106,81:30:187:0.433:2	0/1:111,70:30:181:0.387:2
chr2	159222561	rs13401538	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,70:29:160:0.438:2
chr2	159434727	rs10933494	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:32:68:0.441:2	./.	./.	0/1:64,51:32:115:0.443:2
chr2	159514812	rs8272	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,48:32:120:0.400:2	./.	./.
chr2	159517857	rs9459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.	./.
chr2	159519588	rs150480813	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.
chr2	159535127	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.	./.
chr2	159535158	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,9:31:191:0.047:2	./.	./.	./.	./.	./.
chr2	159660870	rs17810398	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,18:32:36:0.500:2	0/1:8,16:31:24:0.667:2	./.	0/1:33,26:31:59:0.441:2	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.
chr2	159663599	rs9869	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,35:29:57:0.614:2	0/1:17,16:30:33:0.485:2	./.	./.	0/1:0,38:29:38:1.00:2	0/1:32,25:30:57:0.439:2	./.	0/1:53,45:30:98:0.459:2	0/1:52,24:30:76:0.316:2	./.	0/1:46,29:29:75:0.387:2
chr2	159663615	rs149042644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:34:60:0.067:2	./.	./.
chr2	159663616	rs12535	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:28,15:30:43:0.349:2	0/1:26,27:31:53:0.509:2	0/1:28,20:32:48:0.417:2	./.	0/1:21,36:31:57:0.632:2	0/1:45,30:31:75:0.400:2	./.
chr2	159672251	rs61740880	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,33:31:55:0.600:2	./.	./.	./.	./.	./.	./.
chr2	159672252	rs61740878	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,21:31:55:0.382:2	./.	./.	0/1:34,35:32:69:0.507:2	./.	./.	./.
chr2	159672322	rs138143887	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,16:30:39:0.410:2	./.	./.	./.	./.	./.	./.
chr2	159954175	rs34588551	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,60:32:60:1.00:2	0/1:0,27:32:27:1.00:2	./.	./.	./.	0/1:38,25:31:63:0.397:2	0/1:2,63:32:65:0.969:2	./.	./.	0/1:24,28:32:52:0.538:2	./.
chr2	160005762	rs193207814	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,66:30:146:0.452:2	./.	./.	./.
chr2	160019863	rs12466551	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:32:156:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,194:33:194:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,194:32:194:1.00:2
chr2	160027235	rs201043889	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,49:28:137:0.360:2	./.	./.	./.	./.	./.	./.
chr2	160031488	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:33:56:0.071:2	./.	./.
chr2	160035195	rs12988603	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,109:30:112:0.973:2	0/1:2,65:31:67:0.970:2	./.	./.	./.	0/1:83,69:28:152:0.454:2	0/1:5,118:30:123:0.959:2	./.	./.	0/1:65,44:30:109:0.404:2	0/1:57,58:30:115:0.504:2
chr2	160035207	rs6748288	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:29:107:1.00:2	0/1:0,64:28:64:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,129:28:129:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,115:28:115:1.00:2	0/1:1,134:29:135:0.993:2	0/1:0,116:30:116:1.00:2	0/1:0,105:29:105:1.00:2	0/1:0,96:29:96:1.00:2
chr2	160075854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.
chr2	160084473	rs2288110	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,39:33:40:0.975:2	0/1:11,7:34:18:0.389:2	0/1:31,8:33:39:0.205:2	./.	0/1:12,10:33:22:0.455:2	0/1:12,8:34:20:0.400:2	0/1:12,6:33:18:0.333:2	0/1:16,21:32:37:0.568:2
chr2	160086653	rs4664276	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:32:44:1.00:2	0/1:46,16:31:62:0.258:2	0/1:44,20:32:64:0.313:2	./.	0/1:48,19:32:67:0.284:2	0/1:28,20:33:48:0.417:2	0/1:35,21:31:56:0.375:2	0/1:42,17:33:59:0.288:2
chr2	160086654	rs55738533	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:32:44:1.00:2	0/1:44,16:32:61:0.267:2	0/1:45,20:32:65:0.308:2	./.	0/1:48,19:32:67:0.284:2	0/1:28,19:33:48:0.404:2	0/1:34,21:31:56:0.382:2	0/1:40,18:31:58:0.310:2
chr2	160086692	rs3821296	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,55:29:55:1.00:2	0/1:47,17:29:64:0.266:2	0/1:46,20:29:66:0.303:2	./.	0/1:48,22:29:70:0.314:2	0/1:30,18:30:49:0.375:2	0/1:31,13:28:44:0.295:2	0/1:49,20:28:69:0.290:2
chr2	160112881	rs7591849	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,40:32:40:1.00:2	0/1:0,19:32:19:1.00:2	0/1:1,2:32:3:0.667:2	./.	0/1:24,11:32:35:0.314:2	0/1:23,19:30:42:0.452:2	0/1:0,16:32:16:1.00:2	./.	0/1:37,14:33:51:0.275:2	0/1:30,22:32:52:0.423:2	0/1:29,25:32:54:0.463:2
chr2	160114437	rs3213715	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,62:33:62:1.00:2	0/1:0,38:33:38:1.00:2	0/1:3,4:31:7:0.571:2	./.	0/1:41,23:32:64:0.359:2	0/1:47,37:31:84:0.440:2	0/1:2,35:33:37:0.946:2	./.	0/1:68,44:33:112:0.393:2	0/1:47,46:33:93:0.495:2	0/1:72,72:33:144:0.500:2
chr2	160136337	rs174264	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,142:33:142:1.00:2
chr2	160182302	rs415793	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:32:13:0.692:2	0/1:102,61:31:163:0.374:2	0/1:51,31:32:82:0.378:2	./.	./.	0/1:89,70:32:159:0.440:2	./.	0/1:65,74:32:139:0.532:2	./.
chr2	160182330	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	160205324	rs11679175	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,27:30:67:0.403:2	0/1:13,10:31:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	160289863	rs61733380	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,26:30:65:0.400:2	0/1:36,37:33:73:0.507:2	./.	./.	./.	./.	./.	./.
chr2	160294842	rs3213790	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2	./.	./.	./.	./.	./.	./.
chr2	160294977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.
chr2	160310246	rs10202670	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,20:29:61:0.328:2	./.	./.	./.	./.	./.	./.
chr2	160604372	rs149252951	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,94:33:175:0.537:2	./.	./.	./.	./.	./.	0/1:66,73:33:139:0.525:2	0/1:119,76:33:195:0.390:2
chr2	160604379	rs16844275	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,84:33:196:0.429:2	./.	./.
chr2	160604420	rs147683093	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.	./.
chr2	160604452	rs11555185	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,102:32:102:1.00:2	./.	0/1:0,91:31:91:1.00:2	0/1:41,42:32:83:0.506:2	./.	./.	0/1:36,45:31:81:0.556:2	0/1:83,62:31:145:0.428:2
chr2	160604768	rs141659304	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.	./.
chr2	160604812	rs1427329	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,40:33:40:1.00:2	0/1:0,38:33:38:1.00:2	./.	./.	0/1:20,29:32:49:0.592:2	./.	0/1:13,30:32:43:0.698:2	0/1:30,25:33:55:0.455:2	0/1:43,22:34:65:0.338:2	0/1:18,19:32:37:0.514:2	0/1:39,28:33:67:0.418:2
chr2	160604936	rs13024801	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:32:31:0.355:2	./.	./.	./.	./.	./.	./.
chr2	160605268	rs1365803	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,56:31:56:1.00:2	0/1:2,43:32:45:0.956:2	0/1:0,55:32:55:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,58:32:58:1.00:2
chr2	160605373	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:29:9:0.667:2	0/1:0,8:28:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	160639970	rs2114626	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:27:30:1.00:2	0/1:1,19:27:20:0.950:2	./.	./.	0/1:17,29:28:46:0.630:2	./.	0/1:15,9:28:24:0.375:2	0/1:25,14:27:39:0.359:2	0/1:12,19:29:31:0.613:2	0/1:12,21:29:33:0.636:2	0/1:28,19:28:47:0.404:2
chr2	160673526	rs2059696	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,50:31:51:0.980:2	./.	0/1:2,42:31:44:0.955:2	0/1:24,23:30:47:0.489:2	./.	./.	0/1:21,24:32:45:0.533:2	0/1:31,27:32:58:0.466:2
chr2	160676350	rs17827158	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,22:32:37:0.595:2	./.	./.	./.	./.	./.	./.
chr2	160676427	rs12692566	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,19:32:31:0.613:2	0/1:15,13:32:28:0.464:2	./.	0/1:0,31:31:31:1.00:2	0/1:15,7:31:22:0.318:2	0/1:0,23:31:23:1.00:2	0/1:22,5:32:27:0.185:2	0/1:21,9:32:30:0.300:2	0/1:18,21:32:40:0.538:2	0/1:19,14:33:33:0.424:2	0/1:0,44:32:44:1.00:2
chr2	160710216	rs41264211	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,27:33:47:0.574:2	0/1:15,14:33:29:0.483:2	./.	./.	0/1:29,37:32:66:0.561:2	./.	0/1:31,42:33:73:0.575:2	./.	./.	./.	./.
chr2	160710922	rs2729705	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:1,98:31:99:0.990:2	./.	0/1:0,118:30:118:1.00:2	0/1:59,34:32:93:0.366:2	0/1:1,101:31:102:0.990:2	0/1:79,61:32:140:0.436:2	0/1:0,99:31:99:1.00:2	0/1:69,68:31:137:0.496:2
chr2	160711045	rs3951216	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,110:33:112:0.982:2	0/1:0,52:33:52:1.00:2	./.	./.	0/1:0,70:32:70:1.00:2	./.	0/1:62,44:33:106:0.415:2	./.	0/1:96,69:34:165:0.418:2	./.	0/1:91,61:33:152:0.401:2
chr2	160729005	rs1397706	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:31:78:0.436:2	./.	./.	./.
chr2	160737621	rs11675155	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:30:81:0.407:2	0/1:32,8:30:40:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,37:31:108:0.343:2
chr2	160738677	rs16822581	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2	0/1:29,24:32:53:0.453:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,52:32:114:0.456:2
chr2	160743040	rs2271381	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.
chr2	160808075	rs3828323	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,19:32:20:0.950:2	0/1:1,136:32:137:0.993:2	./.	0/1:3,128:32:131:0.977:2	0/1:63,64:32:127:0.504:2	./.	0/1:81,72:33:153:0.471:2	0/1:0,125:32:125:1.00:2	0/1:92,76:32:168:0.452:2
chr2	160826651	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,15:31:21:0.714:2	./.	./.	./.	./.	./.
chr2	160833188	rs2715918	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:87,64:28:151:0.424:2	0/1:44,28:27:72:0.389:2	0/1:0,15:28:15:1.00:2	./.	0/1:0,122:28:122:1.00:2	0/1:1,137:28:138:0.993:2	0/1:0,126:28:126:1.00:2	0/1:102,64:28:166:0.386:2	0/1:82,86:28:168:0.512:2	0/1:0,130:28:130:1.00:2	0/1:0,175:28:176:1.00:2
chr2	160843680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:29:196:0.026:2
chr2	160876670	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,63:31:126:0.500:2	0/1:33,30:31:63:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	160879259	rs33985939	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2	./.	./.	./.	./.
chr2	160885418	rs35771982	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:0,157:32:157:1.00:2	./.	0/1:2,154:32:157:0.987:2	0/1:82,53:33:135:0.393:2	./.	0/1:96,59:33:155:0.381:2	0/1:0,136:33:136:1.00:2	0/1:103,81:32:184:0.440:2
chr2	160885442	rs3749117	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,126:32:126:1.00:2	./.	0/1:0,116:31:116:1.00:2	0/1:69,49:31:118:0.415:2	./.	0/1:79,41:31:120:0.342:2	0/1:0,94:32:94:1.00:2	0/1:86,72:31:159:0.456:2
chr2	160901517	rs4665143	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,34:28:77:0.442:2	0/1:14,35:30:49:0.714:2	0/1:0,9:31:9:1.00:2	0/1:0,79:29:80:1.00:2	./.	0/1:0,106:28:106:1.00:2	./.	0/1:48,37:28:85:0.435:2	0/1:0,112:29:112:1.00:2	0/1:0,65:27:65:1.00:2	0/1:0,90:28:90:1.00:2
chr2	160918804	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,10:15:52:0.192:2	./.	./.	0/1:88,35:16:123:0.285:2	0/1:58,28:14:86:0.326:2	0/1:67,15:14:82:0.183:2	0/1:70,14:13:84:0.167:2	0/1:105,37:15:142:0.261:2	0/1:60,14:14:74:0.189:2	0/1:54,20:14:74:0.270:2	0/1:26,8:15:34:0.235:2
chr2	160968628	rs16844790	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,91:29:197:0.462:2	./.	./.	./.
chr2	160983060	rs2305819	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,39:31:90:0.433:2	./.	./.	./.	0/1:53,42:32:95:0.442:2	0/1:46,32:32:78:0.410:2	0/1:40,37:32:77:0.481:2	0/1:37,48:31:85:0.565:2
chr2	161029218	rs2305818	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:3,54:30:57:0.947:2	./.	0/1:2,47:29:49:0.959:2	./.	0/1:32,36:30:68:0.529:2	0/1:0,46:31:46:1.00:2	0/1:0,47:30:47:1.00:2	0/1:40,27:29:68:0.403:2
chr2	161157209	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.
chr2	161157239	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	./.
chr2	161159999	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	161174693	rs1430	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:31:18:1.00:2	./.	0/1:0,25:32:25:1.00:2	./.	0/1:0,23:32:23:1.00:2	0/1:15,19:33:34:0.559:2	0/1:14,5:32:19:0.263:2	0/1:21,13:32:34:0.382:2
chr2	162273232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.
chr2	162696414	rs2084543	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:42,44:32:86:0.512:2	0/1:13,15:31:28:0.536:2	./.	./.	./.	./.	./.	0/1:66,71:32:137:0.518:2	./.	./.	0/1:42,41:31:83:0.494:2
chr2	162760646	rs61748242	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,24:31:68:0.353:2	./.	./.	./.	./.	./.
chr2	162762296	rs61761953	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,68:32:159:0.428:2	./.	./.	./.	./.
chr2	162865133	rs41268649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:32:75:0.493:2	./.	./.	./.
chr2	162875324	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.
chr2	162890142	rs56179129	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:31:66:0.455:2	0/1:14,12:31:26:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	162929979	rs17574	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,70:32:72:0.986:2	0/1:0,35:32:35:1.00:2	./.	0/1:58,46:32:104:0.442:2	./.	./.	0/1:86,64:32:150:0.427:2	0/1:50,55:32:105:0.524:2	0/1:40,43:32:83:0.518:2	0/1:33,26:33:59:0.441:2	0/1:57,34:33:91:0.374:2
chr2	163005674	rs5645	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,31:30:83:0.373:2	./.	./.	./.	./.	./.
chr2	163029378	rs80245757	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:33:60:0.533:2	0/1:20,27:31:47:0.574:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	163080982	rs16846391	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.	./.
chr2	163124051	rs1990760	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:32:56:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:36,35:32:71:0.493:2	0/1:4,15:32:19:0.789:2	./.	0/1:1,29:31:30:0.967:2	0/1:3,43:31:46:0.935:2	0/1:0,83:32:83:1.00:2	0/1:34,20:31:54:0.370:2	0/1:53,30:32:83:0.361:2
chr2	163124596	rs35732034	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,44:33:99:0.444:2	0/1:26,31:32:57:0.544:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	163128824	rs3747517	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,163:30:165:0.988:2	0/1:0,109:29:109:1.00:2	0/1:29,8:28:37:0.216:2	0/1:101,89:30:190:0.468:2	0/1:3,190:30:193:0.984:2	0/1:68,113:30:181:0.624:2	0/1:1,176:30:178:0.994:2	0/1:0,184:30:184:1.00:2	0/1:0,181:31:181:1.00:2	0/1:1,183:30:184:0.995:2	0/1:108,75:29:183:0.410:2
chr2	163133396	rs72650663	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:31:116:0.474:2	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	163136505	rs35337543	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,33:33:80:0.418:2	0/1:29,22:32:51:0.431:2	./.	0/1:36,32:33:68:0.471:2	0/1:36,22:30:58:0.379:2	./.	./.	./.	./.	./.	./.
chr2	163137871	rs12479043	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,54:32:138:0.391:2	./.	./.	./.	./.	./.
chr2	163137872	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2
chr2	163137983	rs10930046	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,63:29:135:0.467:2	./.	./.	./.	./.	./.
chr2	163150122	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2
chr2	163208893	rs17783344	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:41,25:32:66:0.379:2	./.	./.	./.	./.	0/1:40,33:33:73:0.452:2	./.
chr2	163228539	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.
chr2	163236480	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2
chr2	163253271	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:34:97:0.041:2
chr2	164466243	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,14:32:102:0.137:2	./.
chr2	165353712	rs8192673	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,34:31:82:0.415:2	0/1:28,19:31:47:0.404:2	0/1:0,14:30:14:1.00:2	0/1:82,43:31:125:0.344:2	0/1:0,87:30:87:1.00:2	0/1:58,40:31:98:0.408:2	0/1:3,105:31:108:0.972:2	0/1:91,50:31:141:0.355:2	0/1:0,91:32:91:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,106:32:106:1.00:2
chr2	165381531	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr2	165476253	rs61748245	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,162:32:163:0.994:2	0/1:0,98:32:98:1.00:2	0/1:8,10:31:18:0.556:2	0/1:93,92:31:185:0.497:2	0/1:1,122:31:124:0.992:2	./.	0/1:99,71:31:170:0.418:2	0/1:113,86:31:199:0.432:2	0/1:1,198:32:199:0.995:2	0/1:0,162:31:162:1.00:2	0/1:118,80:31:198:0.404:2
chr2	165551201	rs7607980	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	0/1:34,40:33:74:0.541:2	./.	0/1:41,32:34:73:0.438:2	0/1:30,38:34:68:0.559:2	./.	./.
chr2	165551404	rs17244632	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,24:32:56:0.429:2	0/1:8,13:32:21:0.619:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	0/1:44,24:30:68:0.353:2	./.	0/1:35,34:32:69:0.493:2
chr2	165552222	rs116305649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,71:32:188:0.378:2	./.	./.	./.	./.
chr2	165586466	rs13392281	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,40:31:105:0.381:2	./.	./.	0/1:60,63:31:123:0.512:2	./.	0/1:63,72:32:135:0.533:2
chr2	165630201	rs355863	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	0/1:13,9:31:22:0.409:2	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.
chr2	165698547	rs2279982	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:32:16:0.625:2	./.	./.	0/1:3,6:32:9:0.667:2
chr2	165793883	rs143997426	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.	./.	./.
chr2	165811232	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.
chr2	165947161	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:145,5:32:150:0.033:2	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.
chr2	165947269	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.
chr2	165947311	rs75324726	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.
chr2	165986505	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.
chr2	165987772	rs62174900	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,49:33:121:0.405:2	0/1:43,43:32:86:0.500:2	./.
chr2	165996107	rs1946892	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:30:8:0.375:2	0/1:51,55:32:106:0.519:2	0/1:49,31:33:80:0.388:2	./.	./.	0/1:82,36:32:118:0.305:2	0/1:52,38:34:90:0.422:2	0/1:0,64:33:64:1.00:2	./.
chr2	165997209	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:31:153:0.039:2	./.	./.	./.
chr2	165997260	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	./.	./.	./.
chr2	166003479	rs16850131	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,43:31:118:0.364:2	0/1:54,58:30:113:0.518:2	./.
chr2	166011088	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.
chr2	166020180	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,5:32:68:0.074:2	./.	./.	./.	./.	./.	./.
chr2	166152389	rs17183814	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,25:32:80:0.313:2	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	./.
chr2	166165679	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,5:31:83:0.060:2	./.	./.	./.
chr2	166179779	rs141815642	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,65:30:145:0.448:2	./.	./.	./.	./.	./.
chr2	166201163	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:106,5:32:111:0.045:2	./.	0/1:162,4:32:166:0.024:2	0/1:150,6:32:156:0.038:2	0/1:173,5:32:178:0.028:2	0/1:108,6:29:114:0.053:2	./.	./.	./.	0/1:185,5:32:193:0.026:2
chr2	166223736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	./.
chr2	166237687	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.
chr2	166243293	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2
chr2	166243333	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,6:31:169:0.036:2	./.	./.	./.	./.	./.	./.
chr2	166243400	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:31:150:0.033:2	./.	./.	./.	./.
chr2	166245167	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.
chr2	166245230	rs2060198	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	0/1:82,60:31:142:0.423:2	./.	./.	./.	./.	./.
chr2	166245762	rs147084515	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2	0/1:129,8:30:137:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	166514393	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,7:18:67:0.104:2	0/1:57,11:18:68:0.162:2	./.	./.
chr2	166535883	rs61738743	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:32:46:0.370:2	./.	./.	./.	./.	./.
chr2	166535918	rs777346	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,60:32:63:0.952:2	0/1:0,45:31:45:1.00:2	0/1:7,5:32:12:0.417:2	0/1:27,34:31:61:0.557:2	0/1:0,42:31:42:1.00:2	./.	0/1:36,26:32:62:0.419:2	0/1:42,25:31:67:0.373:2	0/1:0,71:32:71:1.00:2	./.	./.
chr2	166606326	rs146521644	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,60:31:121:0.496:2	./.	./.	./.	./.	./.	0/1:62,89:32:151:0.589:2
chr2	166618262	rs1968294	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,19:32:19:1.00:2	0/1:2,3:31:5:0.600:2	0/1:21,6:31:27:0.222:2	0/1:0,32:32:32:1.00:2	./.	0/1:14,21:31:35:0.600:2	0/1:0,31:31:31:1.00:2	0/1:1,42:33:43:0.977:2	0/1:19,27:32:46:0.587:2	./.
chr2	166627079	rs149809222	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	./.	./.	./.
chr2	166740469	rs115504901	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,77:32:173:0.445:2
chr2	166770120	rs10176588	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,31:33:78:0.397:2	0/1:21,29:33:50:0.580:2	0/1:10,15:33:25:0.600:2	0/1:37,62:32:99:0.626:2	0/1:43,52:32:95:0.547:2	0/1:0,105:32:105:1.00:2	0/1:1,102:32:103:0.990:2	0/1:2,127:32:130:0.984:2	0/1:57,66:33:123:0.537:2	./.	./.
chr2	166773971	rs6750044	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,53:32:132:0.402:2	0/1:39,47:32:86:0.547:2	0/1:3,10:31:13:0.769:2	0/1:72,52:31:124:0.419:2	0/1:47,39:31:86:0.453:2	0/1:2,103:31:105:0.981:2	0/1:3,85:31:88:0.966:2	0/1:1,116:31:117:0.991:2	0/1:63,56:33:119:0.471:2	./.	./.
chr2	166788336	rs7592429	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:53:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,90:32:90:1.00:2
chr2	166789554	rs74447004	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:33:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	166797646	rs1432273	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,39:30:77:0.506:2	0/1:23,28:31:51:0.549:2	./.	0/1:47,47:31:94:0.500:2	0/1:44,26:31:70:0.371:2	./.	./.	./.	0/1:49,52:31:101:0.515:2	0/1:0,64:31:64:1.00:2	0/1:1,110:31:111:0.991:2
chr2	166810159	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.
chr2	166810161	rs59477041	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:4,8:26:12:0.667:2	./.	./.	./.	./.	./.
chr2	166848163	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.
chr2	166848187	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.
chr2	166848225	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.
chr2	166848346	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.
chr2	166848837	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,6:32:165:0.036:2	./.	./.	./.
chr2	166848838	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,6:31:164:0.037:2	./.	./.	./.
chr2	166848862	rs369650500	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	0/1:129,8:32:137:0.058:2	./.	./.	./.
chr2	166892788	rs2298771	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,73:33:172:0.424:2	0/1:80,46:32:126:0.365:2	0/1:15,12:31:27:0.444:2	0/1:0,157:31:157:1.00:2	0/1:0,138:31:138:1.00:2	0/1:3,148:31:152:0.980:2	0/1:0,123:32:123:1.00:2	0/1:1,151:31:152:0.993:2	0/1:110,78:32:188:0.415:2	0/1:71,80:31:151:0.530:2	0/1:115,79:32:194:0.407:2
chr2	166897864	rs6432860	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,37:30:76:0.487:2	0/1:17,17:30:34:0.500:2	0/1:7,5:29:12:0.417:2	0/1:1,101:30:102:0.990:2	0/1:0,63:30:63:1.00:2	0/1:0,127:29:127:1.00:2	0/1:1,68:30:69:0.986:2	0/1:0,69:30:69:1.00:2	0/1:56,36:32:92:0.391:2	0/1:39,42:30:81:0.519:2	0/1:55,47:29:102:0.461:2
chr2	166903445	rs7580482	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,54:33:91:0.593:2	0/1:28,34:32:62:0.548:2	0/1:3,12:32:15:0.800:2	0/1:0,99:32:99:1.00:2	0/1:0,44:31:44:1.00:2	0/1:1,91:32:93:0.989:2	0/1:0,58:33:58:1.00:2	0/1:0,84:32:84:1.00:2	0/1:51,53:33:104:0.510:2	0/1:48,51:32:99:0.515:2	0/1:61,77:32:139:0.558:2
chr2	166909378	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,5:30:162:0.031:2	./.	./.	./.	./.	./.	./.
chr2	166909417	rs200975276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.	./.	./.	./.	./.	./.
chr2	167055193	rs200785571	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,69:32:136:0.507:2	0/1:50,30:32:80:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	167056311	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:34:146:0.041:2	./.	./.
chr2	167056337	rs149207258	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	0/1:66,22:30:88:0.250:2	./.	./.	./.	./.	./.
chr2	167060696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:31:95:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr2	167060927	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:30:64:0.078:2	./.	./.	./.
chr2	167060957	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.
chr2	167060974	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	0/1:42,4:33:46:0.087:2	./.
chr2	167094638	rs141268327	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,42:33:107:0.393:2	./.	./.	./.	./.
chr2	167099158	rs6746030	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:30:88:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,14:30:14:1.00:2	0/1:1,89:31:90:0.989:2	0/1:41,35:30:76:0.461:2	0/1:0,75:30:75:1.00:2	0/1:1,76:30:77:0.987:2	./.	0/1:0,103:31:103:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,109:30:109:1.00:2
chr2	167108345	rs200160858	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,13:31:54:0.241:2	./.	./.	./.	./.	./.	./.
chr2	167142979	rs58022607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,44:31:99:0.444:2	./.	./.	./.	./.	./.
chr2	167144974	rs6747673	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:2,49:31:51:0.961:2	0/1:3,3:32:6:0.500:2	0/1:39,31:31:70:0.443:2	0/1:30,24:31:54:0.444:2	0/1:60,41:31:101:0.406:2	0/1:41,17:31:58:0.293:2	0/1:0,67:31:67:1.00:2	0/1:54,42:32:96:0.438:2	0/1:42,20:32:62:0.323:2	0/1:0,82:32:82:1.00:2
chr2	167144995	rs13402180	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,42:33:75:0.560:2	0/1:42,19:33:61:0.311:2	0/1:3,5:32:8:0.625:2	0/1:41,43:33:84:0.512:2	./.	./.	0/1:48,22:32:70:0.314:2	0/1:1,87:32:88:0.989:2	0/1:70,53:33:123:0.431:2	0/1:51,27:33:78:0.346:2	0/1:0,101:33:101:1.00:2
chr2	167145106	rs58465962	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:30:30:0.433:2	./.	./.	./.	./.	./.
chr2	167145142	rs13414203	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,8:33:18:0.444:2	0/1:8,6:31:14:0.429:2	./.	0/1:10,8:30:18:0.444:2	./.	./.	0/1:8,7:31:15:0.467:2	0/1:0,18:30:18:1.00:2	0/1:7,9:32:16:0.563:2	./.	0/1:0,15:31:15:1.00:2
chr2	167160593	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:29:71:0.056:2	0/1:88,4:30:92:0.043:2	./.	./.	./.
chr2	167163043	rs9646771	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,40:29:40:1.00:2	0/1:7,6:31:13:0.462:2	0/1:67,47:31:114:0.412:2	0/1:0,61:30:61:1.00:2	0/1:78,35:30:113:0.310:2	0/1:0,47:30:47:1.00:2	0/1:0,86:29:86:1.00:2	0/1:66,40:31:106:0.377:2	./.	0/1:89,50:30:139:0.360:2
chr2	167168093	rs6432901	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:65:1.00:2	0/1:0,32:31:32:1.00:2	0/1:2,5:32:7:0.714:2	0/1:49,39:30:88:0.443:2	0/1:0,56:30:56:1.00:2	0/1:31,45:30:76:0.592:2	0/1:1,73:31:74:0.986:2	0/1:0,88:31:88:1.00:2	0/1:67,23:32:90:0.256:2	./.	0/1:51,64:31:115:0.557:2
chr2	167262088	rs16852112	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,59:33:60:0.983:2	./.	0/1:24,29:32:54:0.547:2	./.
chr2	167262169	rs35344714	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:33:31:0.548:2	./.	./.	./.	./.	0/1:1,190:33:191:0.995:2	./.	0/1:86,99:32:185:0.535:2	./.
chr2	167262353	rs3791251	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	0/1:0,68:32:68:1.00:2	./.	0/1:46,43:33:89:0.483:2	./.
chr2	167262429	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.
chr2	167262882	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr2	167262939	rs33953730	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:32:30:0.400:2	./.	./.	./.	./.	0/1:4,150:32:154:0.974:2	./.	0/1:91,84:33:175:0.480:2	./.
chr2	167269629	rs33922582	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	0/1:8,108:32:116:0.931:2	./.	0/1:76,52:32:128:0.406:2	./.
chr2	167279922	rs6738031	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,11:29:23:0.478:2	0/1:10,6:32:16:0.375:2	0/1:0,2:31:2:1.00:2	0/1:0,28:31:28:1.00:2	0/1:14,11:31:25:0.440:2	./.	0/1:0,15:31:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:20,14:31:34:0.412:2	0/1:0,19:32:19:1.00:2	0/1:0,34:31:34:1.00:2
chr2	167301338	rs35213258	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,59:34:123:0.480:2	./.	./.
chr2	167313451	rs11888208	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:50,49:32:99:0.495:2	./.	./.	./.	0/1:40,70:32:110:0.636:2	./.	0/1:0,107:32:108:1.00:2	0/1:61,51:33:112:0.455:2
chr2	167334085	rs7565062	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,48:32:91:0.527:2	0/1:46,40:31:86:0.465:2	0/1:0,14:31:14:1.00:2	0/1:2,103:31:105:0.981:2	0/1:35,42:31:77:0.545:2	./.	0/1:0,49:32:49:1.00:2	0/1:46,37:31:83:0.446:2	0/1:73,58:32:131:0.443:2	0/1:0,124:31:124:1.00:2	0/1:0,154:32:154:1.00:2
chr2	167992482	rs114147582	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:33:49:0.367:2	./.	./.
chr2	168099726	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.
chr2	168101386	rs76672761	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,29:30:58:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr2	168102774	rs72884678	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	168103016	rs117183838	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.	./.	./.
chr2	168103950	rs116578731	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,53:32:87:0.609:2	./.	./.
chr2	168725741	rs141683896	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,52:32:108:0.481:2	./.	./.
chr2	168726659	rs12466817	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,29:34:29:1.00:2	0/1:7,9:32:16:0.563:2	0/1:12,16:33:28:0.571:2
chr2	169020276	rs201338418	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:137,5:32:142:0.035:2	./.	./.	0/1:156,4:31:160:0.025:2	0/1:90,4:32:94:0.043:2	0/1:112,4:33:116:0.034:2	./.	./.	./.	./.	./.
chr2	169659219	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.
chr2	169681151	rs3732031	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,72:32:193:0.373:2	./.	./.	./.	./.
chr2	169687981	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.
chr2	169721377	rs479661	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,54:31:55:0.982:2	0/1:0,23:31:23:1.00:2	0/1:28,21:31:49:0.429:2	0/1:31,11:32:42:0.262:2	0/1:38,30:30:68:0.441:2	0/1:0,38:32:38:1.00:2	0/1:31,14:31:45:0.311:2	0/1:2,59:31:61:0.967:2
chr2	169721381	rs3931	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:33,24:32:57:0.421:2	./.	0/1:30,20:31:50:0.400:2	0/1:35,13:33:48:0.271:2	./.	./.	./.	0/1:40,20:32:61:0.333:2
chr2	169764176	rs492594	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,59:32:59:1.00:2	./.	0/1:4,175:33:179:0.978:2	0/1:101,88:32:189:0.466:2	./.	0/1:117,79:33:196:0.403:2	./.	./.	./.
chr2	169764491	rs2232326	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	169764546	rs2232328	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.	./.
chr2	169780200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:158:0.025:2
chr2	169789016	rs497692	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,105:29:106:0.991:2	0/1:0,55:28:55:1.00:2	0/1:14,6:28:20:0.300:2	./.	0/1:52,53:30:105:0.505:2	./.	0/1:62,56:29:118:0.475:2	0/1:1,103:28:104:0.990:2	0/1:2,133:30:135:0.985:2	0/1:59,48:30:107:0.449:2	./.
chr2	169828367	rs200687717	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,11:15:134:0.082:2
chr2	169828424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,5:28:141:0.035:2	./.
chr2	169830328	rs2287622	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,80:33:81:0.988:2	0/1:0,52:32:52:1.00:2	0/1:8,4:31:12:0.333:2	./.	0/1:37,33:31:70:0.471:2	0/1:0,96:32:96:1.00:2	0/1:35,46:32:81:0.568:2	0/1:0,107:32:107:1.00:2	0/1:0,107:33:107:1.00:2	./.	0/1:0,142:32:142:1.00:2
chr2	169869901	rs4148777	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:33:101:0.525:2	./.
chr2	169870882	rs4148776	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:34:27:0.556:2	./.
chr2	169948439	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:33:52:0.462:2	0/1:9,16:33:25:0.640:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	169952233	rs1059261	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,28:32:77:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr2	169997051	rs990626	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:32:33:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:21,15:31:36:0.417:2	0/1:11,18:32:29:0.621:2
chr2	170003432	rs4667591	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:106:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,20:32:20:1.00:2	0/1:73,69:32:142:0.486:2	0/1:72,45:32:117:0.385:2	0/1:0,147:32:147:1.00:2	0/1:3,145:32:148:0.980:2	0/1:4,159:32:163:0.975:2	0/1:98,73:33:171:0.427:2	0/1:68,54:32:122:0.443:2	0/1:2,129:32:131:0.985:2
chr2	170009343	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.	./.
chr2	170009391	rs148356370	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,81:33:167:0.485:2	./.	./.
chr2	170009453	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,21:32:83:0.253:2	./.	./.	./.	./.	./.	./.	./.
chr2	170010985	rs2075252	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:30:18:1.00:2	0/1:83,49:30:133:0.371:2	0/1:61,43:30:104:0.413:2	0/1:0,111:30:111:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,110:30:110:1.00:2	./.	0/1:59,39:31:98:0.398:2	0/1:0,134:30:134:1.00:2
chr2	170012877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.
chr2	170013904	rs79723119	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2	./.	./.	./.	./.	./.
chr2	170025080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170025083	rs2229268	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,84:29:187:0.449:2
chr2	170032989	rs2229265	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:31:23:1.00:2	0/1:82,85:31:167:0.509:2	0/1:85,71:31:156:0.455:2	0/1:2,148:31:150:0.987:2	0/1:0,151:32:151:1.00:2	0/1:2,124:31:127:0.984:2	./.	0/1:64,55:32:119:0.462:2	0/1:59,47:31:106:0.443:2
chr2	170053505	rs2228171	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:21,33:32:54:0.611:2	0/1:31,29:31:60:0.483:2	0/1:37,34:31:71:0.479:2	./.	./.	0/1:0,65:33:65:1.00:2	0/1:20,23:33:43:0.535:2	./.
chr2	170060603	rs17848169	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,81:33:179:0.453:2	./.
chr2	170062078	rs13397109	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:33:64:0.469:2	./.
chr2	170070172	rs4667596	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,19:32:74:0.257:2	./.
chr2	170070292	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,62:34:110:0.564:2	./.	./.
chr2	170070348	rs11886219	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170072889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2
chr2	170088351	rs2302694	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.	./.	./.	./.	./.	./.	0/1:38,27:32:65:0.415:2	0/1:63,52:32:115:0.452:2
chr2	170092395	rs2229267	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:22,13:28:35:0.371:2	./.	./.	./.	./.	./.	0/1:0,64:29:64:1.00:2
chr2	170094785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.
chr2	170099473	rs831042	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,43:30:134:0.321:2	./.	./.	./.	./.	0/1:55,41:30:96:0.427:2	0/1:62,39:28:101:0.386:2
chr2	170099557	rs181448146	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:33:76:0.513:2	./.	./.	./.	./.
chr2	170103336	rs831043	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,9:30:26:0.346:2	./.	0/1:95,58:28:153:0.379:2	./.	./.	./.	./.	0/1:80,65:30:145:0.448:2	0/1:88,76:28:164:0.463:2
chr2	170103351	rs2075249	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,116:32:118:0.983:2	0/1:0,62:32:62:1.00:2	0/1:15,6:31:21:0.286:2	./.	0/1:92,53:31:145:0.366:2	./.	./.	./.	0/1:78,69:32:147:0.469:2	./.	./.
chr2	170115588	rs2241190	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:30:18:0.667:2	./.	0/1:67,58:30:125:0.464:2	./.	./.	./.	./.	0/1:79,62:31:141:0.440:2	0/1:0,111:30:111:1.00:2
chr2	170115672	rs33954745	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	0/1:68,53:32:121:0.438:2
chr2	170127562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.
chr2	170129528	rs830994	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,48:32:48:1.00:2	0/1:2,6:27:8:0.750:2	0/1:1,123:31:124:0.992:2	0/1:64,21:29:85:0.247:2	0/1:50,44:30:94:0.468:2	0/1:63,33:31:96:0.344:2	0/1:1,109:31:110:0.991:2	0/1:0,103:32:103:1.00:2	0/1:55,38:31:93:0.409:2	0/1:0,89:31:89:1.00:2
chr2	170129547	rs34291900	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,45:31:78:0.577:2	./.
chr2	170147502	rs34693334	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,17:31:59:0.288:2	./.
chr2	170150671	rs2229266	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,188:32:191:0.984:2	0/1:126,71:32:197:0.360:2	./.	0/1:125,74:32:199:0.372:2	./.	./.	0/1:109,88:33:197:0.447:2	0/1:113,84:32:197:0.426:2
chr2	170163816	rs34104660	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:34:9:0.444:2	./.	./.	0/1:31,32:32:63:0.508:2	./.	./.	0/1:56,43:33:99:0.434:2	./.	./.
chr2	170175334	rs2229263	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,122:33:124:0.984:2	0/1:1,56:32:57:0.982:2	0/1:0,9:32:9:1.00:2	0/1:92,64:33:156:0.410:2	./.	0/1:82,68:32:151:0.453:2	0/1:2,110:33:112:0.982:2	0/1:63,67:32:130:0.515:2	./.	./.	./.
chr2	170218847	rs1559014	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,5:33:5:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:35:2:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,4:30:4:1.00:2
chr2	170366296	rs28730867	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.
chr2	170366752	rs140948035	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.
chr2	170367099	rs28763868	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,31:32:77:0.403:2	./.	0/1:39,34:31:73:0.466:2	./.	./.	0/1:0,101:32:101:1.00:2	./.	./.
chr2	170367144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.
chr2	170371159	rs147650614	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.
chr2	170403030	rs2253680	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,106:31:108:0.981:2	0/1:1,66:30:67:0.985:2	0/1:0,18:30:18:1.00:2	0/1:62,45:30:107:0.421:2	0/1:0,78:30:78:1.00:2	0/1:50,62:29:112:0.554:2	0/1:51,38:30:89:0.427:2	0/1:0,113:30:113:1.00:2	0/1:58,64:30:122:0.525:2	0/1:0,97:30:97:1.00:2	0/1:54,56:30:110:0.509:2
chr2	170411693	rs2683455	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,26:33:28:0.929:2	0/1:0,19:33:19:1.00:2	0/1:0,2:35:2:1.00:2	0/1:12,17:33:29:0.586:2	0/1:0,9:32:9:1.00:2	0/1:13,10:32:23:0.435:2	0/1:2,9:34:11:0.818:2	0/1:0,24:32:24:1.00:2	0/1:8,14:33:22:0.636:2	0/1:0,22:34:22:1.00:2	0/1:0,35:33:35:1.00:2
chr2	170417263	rs148415571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr2	170440962	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:32:46:0.413:2	./.
chr2	170463679	rs6759667	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,3:33:4:0.750:2	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	0/1:3,6:32:9:0.667:2
chr2	170489675	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chr2	170489677	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.	./.
chr2	170489735	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:28:134:0.037:2	./.	./.	./.	0/1:136,5:30:141:0.035:2	./.
chr2	170489752	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.
chr2	170493103	rs1050354	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,33:32:62:0.532:2	0/1:22,10:33:32:0.313:2	0/1:2,6:32:8:0.750:2	0/1:0,48:32:48:1.00:2	0/1:20,9:33:29:0.310:2	0/1:29,29:32:58:0.500:2	0/1:9,15:33:24:0.625:2	0/1:37,20:32:57:0.351:2	./.	./.	0/1:49,27:32:76:0.355:2
chr2	170493863	rs8207	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,16:30:49:0.327:2	./.	0/1:13,27:31:40:0.675:2	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.
chr2	170502668	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.
chr2	170506945	rs186722122	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.	./.	./.
chr2	170550839	rs3820952	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,20:31:39:0.513:2	0/1:9,14:31:23:0.609:2	0/1:3,6:31:9:0.667:2	0/1:3,61:32:64:0.953:2	0/1:39,47:31:86:0.547:2	0/1:26,39:31:65:0.600:2	0/1:57,18:31:75:0.240:2	0/1:37,54:31:91:0.593:2	./.	./.	0/1:28,26:29:54:0.481:2
chr2	170592709	rs2288331	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,18:32:32:0.563:2	0/1:11,13:31:24:0.542:2	./.	./.	0/1:13,18:30:31:0.581:2	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	0/1:20,18:33:38:0.474:2
chr2	170605981	rs4667607	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:31:101:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,117:30:117:1.00:2	0/1:1,115:30:116:0.991:2	0/1:0,95:30:95:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,159:31:159:1.00:2
chr2	170632969	rs11422612	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,74:31:161:0.460:2	0/1:40,35:31:75:0.467:2	0/1:7,12:29:19:0.632:2	0/1:1,107:30:108:0.991:2	0/1:46,29:30:75:0.387:2	0/1:2,107:30:109:0.982:2	0/1:1,85:31:86:0.988:2	0/1:69,49:31:118:0.415:2	0/1:70,36:31:106:0.340:2	0/1:0,104:31:104:1.00:2	0/1:58,49:29:107:0.458:2
chr2	170663305	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:83:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170663339	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:85:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170663353	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170728872	rs56240917	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,8:32:23:0.348:2	./.	./.	0/1:21,9:32:30:0.300:2	./.	./.	0/1:36,10:32:46:0.217:2
chr2	170762566	rs10194785	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:32:51:0.529:2	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170802862	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr2	170865442	rs80239364	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,17:29:37:0.459:2	./.	./.	0/1:52,16:29:68:0.235:2	./.	./.	0/1:42,33:30:75:0.440:2
chr2	170873361	rs10497356	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,59:33:128:0.461:2	./.	./.
chr2	170885930	rs77587723	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:31:29:0.103:2	./.	./.	./.	./.	./.
chr2	170917648	rs10203212	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:46,34:33:80:0.425:2	0/1:22,14:33:36:0.389:2	0/1:7,8:33:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170917657	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,5:33:84:0.060:2	./.	./.	./.	./.	./.
chr2	171055772	rs35745676	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:30:31:0.355:2	./.
chr2	171056696	rs56037828	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,57:34:116:0.496:2	./.	./.
chr2	171070912	rs13385825	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,49:31:98:0.500:2	0/1:25,20:31:45:0.444:2	./.	0/1:55,51:31:106:0.481:2	./.	0/1:46,45:30:91:0.495:2	0/1:89,48:31:138:0.350:2	./.	0/1:74,55:31:129:0.426:2	0/1:0,79:31:79:1.00:2	./.
chr2	171073887	rs2161916	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:32:134:1.00:2	0/1:1,71:31:72:0.986:2	0/1:14,7:31:21:0.333:2	0/1:86,71:31:157:0.452:2	./.	0/1:0,156:31:156:1.00:2	0/1:77,62:32:139:0.446:2	./.	0/1:90,82:32:172:0.477:2	0/1:0,121:32:121:1.00:2	./.
chr2	171225841	rs4668246	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,110:30:112:0.982:2	0/1:1,58:28:59:0.983:2	./.	./.	./.	0/1:1,92:30:93:0.989:2	0/1:38,33:30:71:0.465:2	./.	0/1:0,113:31:113:1.00:2	./.	./.
chr2	171240249	rs11675394	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,56:31:98:0.571:2	./.	./.	0/1:32,19:32:51:0.373:2	./.	0/1:1,86:32:87:0.989:2	0/1:25,35:32:60:0.583:2	./.
chr2	171242761	rs17497636	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,76:31:167:0.458:2
chr2	171260787	rs6736609	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,54:30:54:1.00:2	0/1:1,64:30:65:0.985:2	0/1:0,58:29:58:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,88:30:88:1.00:2
chr2	171260797	rs33962844	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,36:32:85:0.424:2	./.	./.	0/1:28,21:32:49:0.429:2	0/1:43,29:32:72:0.403:2	0/1:1,58:32:60:0.983:2	0/1:41,24:33:65:0.369:2	./.
chr2	171260820	rs6751520	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,46:33:46:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,66:33:67:1.00:2	0/1:0,51:33:51:1.00:2	0/1:1,75:33:76:0.987:2
chr2	171355198	rs6761297	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,59:32:59:1.00:2
chr2	171356274	rs10185178	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,53:32:53:1.00:2
chr2	171570151	rs72885464	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:109,79:32:188:0.420:2	0/1:46,47:32:93:0.505:2	./.	./.	./.	./.	0/1:113,74:32:187:0.396:2	0/1:5,181:32:186:0.973:2	0/1:106,85:32:191:0.445:2	0/1:81,98:32:179:0.547:2	./.
chr2	171572799	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.
chr2	171573509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	171649402	rs3764916	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,54:31:54:1.00:2	0/1:11,9:31:20:0.450:2	./.	0/1:21,27:32:48:0.563:2	./.	0/1:35,14:32:49:0.286:2
chr2	171678625	rs769404	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,5:28:5:1.00:2	0/1:1,2:32:3:0.667:2	0/1:0,51:30:51:1.00:2	0/1:0,45:30:45:1.00:2	0/1:21,17:29:38:0.447:2	./.	./.	0/1:27,21:31:48:0.438:2	./.	0/1:13,17:29:30:0.567:2
chr2	171785882	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr2	171818189	rs77658592	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	0/1:26,18:31:44:0.409:2	./.	./.	./.	./.	./.
chr2	171822466	rs4668356	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:31:70:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,110:31:112:0.991:2	0/1:0,138:30:138:1.00:2	0/1:0,98:30:99:1.00:2	0/1:67,70:31:137:0.511:2	0/1:1,122:31:123:0.992:2	0/1:2,96:31:98:0.980:2	0/1:1,73:31:74:0.986:2	0/1:0,56:30:56:1.00:2
chr2	171862688	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.
chr2	171862699	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:33:197:0.030:2	./.	./.	./.	./.
chr2	171862753	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:32:155:0.039:2	./.	./.	./.	./.
chr2	171910313	rs11553951	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:38,26:32:64:0.406:2	0/1:20,13:32:33:0.394:2	0/1:36,31:32:67:0.463:2	./.	./.	0/1:39,38:33:77:0.494:2	./.	./.
chr2	171913025	rs56111030	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.
chr2	171916495	rs3821087	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:31:36:0.306:2	./.	./.	./.
chr2	172180771	rs10205459	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:30:140:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,134:30:134:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,145:31:145:1.00:2	0/1:2,115:30:117:0.983:2	0/1:0,162:29:163:1.00:2
chr2	172182597	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,8:30:118:0.068:2	./.	./.	0/1:190,8:31:198:0.040:2	./.	./.	./.
chr2	172182638	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,8:29:108:0.074:2	./.	./.	0/1:157,5:32:162:0.031:2	./.	./.	./.
chr2	172188368	rs13023973	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,21:32:54:0.389:2	0/1:18,11:32:29:0.379:2	./.	0/1:35,23:32:58:0.397:2	./.	0/1:0,34:31:34:1.00:2	0/1:22,27:32:49:0.551:2	0/1:30,20:32:50:0.400:2	./.	./.	0/1:38,34:32:73:0.472:2
chr2	172216969	rs3731986	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,71:32:71:1.00:2	./.	0/1:0,115:33:115:1.00:2	./.	0/1:3,82:32:85:0.965:2	0/1:46,35:32:81:0.432:2	0/1:40,56:33:96:0.583:2	./.	./.	0/1:0,122:33:122:1.00:2
chr2	172291616	rs6751956	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,15:32:20:0.750:2	./.	0/1:42,29:32:71:0.408:2	0/1:44,59:32:103:0.573:2	./.	./.	./.	./.	./.
chr2	172329458	rs36112363	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:13:0.500:2	./.	0/1:37,38:30:75:0.507:2	0/1:47,35:30:82:0.427:2	./.	./.	./.	./.	./.
chr2	172330393	rs3731983	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	0/1:31,19:32:50:0.380:2	0/1:85,45:32:130:0.346:2	./.	./.	./.	./.	./.
chr2	172378818	rs868106	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,36:31:36:1.00:2	0/1:1,20:31:21:0.952:2	0/1:0,7:33:7:1.00:2	./.	0/1:1,36:31:37:0.973:2	0/1:11,18:31:29:0.621:2	0/1:27,15:30:42:0.357:2	0/1:36,24:32:60:0.400:2	0/1:0,49:33:49:1.00:2	./.	0/1:0,26:31:26:1.00:2
chr2	172379781	rs960749	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,64:32:64:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:49,24:31:73:0.329:2	0/1:27,18:32:45:0.400:2	0/1:35,44:32:79:0.557:2	0/1:0,69:33:69:1.00:2	./.	0/1:0,71:33:71:1.00:2
chr2	172411111	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.
chr2	172411273	rs10455	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,88:32:90:0.978:2	0/1:1,62:32:63:0.984:2	0/1:0,9:30:9:1.00:2	0/1:1,107:31:108:0.991:2	0/1:59,26:31:85:0.306:2	0/1:66,55:31:121:0.455:2	0/1:0,90:32:90:1.00:2	0/1:0,119:31:119:1.00:2	./.	0/1:56,48:32:106:0.462:2	0/1:1,101:32:102:0.990:2
chr2	172584404	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:29:193:0.026:2	./.	./.	./.	./.	./.	./.
chr2	172585298	rs62184168	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:175,10:30:185:0.054:2	0/1:142,9:28:151:0.060:2	./.	./.	0/1:175,17:28:192:0.089:2	0/1:180,11:27:192:0.058:2	./.	./.	0/1:176,7:29:183:0.038:2	./.	0/1:171,10:30:181:0.055:2
chr2	172585301	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:27:198:0.025:2	./.	./.	./.	./.	./.
chr2	172586317	.	T	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,12:28:100:0.120:2	./.	./.	0/1:134,5:30:139:0.036:2	0/1:114,9:30:123:0.073:2	0/1:139,7:30:146:0.048:2	0/1:125,10:29:136:0.074:2	./.	./.	./.	0/1:121,12:31:133:0.090:2
chr2	172602358	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:32:199:0.025:2	./.	./.	./.
chr2	172604328	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:33:192:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:34:192:0.026:2
chr2	172604356	rs201120526	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,5:31:199:0.025:2	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.
chr2	172690557	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2
chr2	172725301	rs1878583	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,32:32:33:0.970:2	0/1:0,19:31:19:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,55:32:55:1.00:2	0/1:2,45:31:47:0.957:2	0/1:30,25:30:55:0.455:2	0/1:20,39:32:59:0.661:2	0/1:0,63:32:63:1.00:2	0/1:30,28:33:58:0.483:2	0/1:0,46:32:46:1.00:2	0/1:0,63:33:63:1.00:2
chr2	172864845	rs6730085	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:2,3:30:5:0.600:2	./.
chr2	172966250	rs2228184	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:17,8:31:25:0.320:2	./.	./.	0/1:8,8:32:16:0.500:2	./.	0/1:7,21:31:28:0.750:2	0/1:7,8:32:15:0.533:2	./.
chr2	173339808	rs11895564	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,28:31:73:0.384:2	./.	0/1:35,27:31:62:0.435:2	./.	0/1:34,23:31:57:0.404:2	0/1:38,26:31:64:0.406:2	0/1:20,13:31:33:0.394:2	0/1:29,26:32:55:0.473:2
chr2	173352103	rs2293649	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,61:29:107:0.570:2	./.	./.	0/1:68,42:32:110:0.382:2	./.	0/1:64,57:32:121:0.471:2
chr2	173352157	rs2293648	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,34:33:78:0.436:2	0/1:33,29:32:62:0.468:2	./.	0/1:49,51:32:100:0.510:2	./.	./.	0/1:42,38:32:80:0.475:2	./.	./.	./.	./.
chr2	173352458	rs61748247	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,45:32:116:0.388:2	./.	./.	./.	./.
chr2	173451074	rs36014095	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,72:29:136:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr2	173460640	rs12693005	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:28:10:0.600:2	0/1:66,52:29:118:0.441:2	./.	./.	./.	0/1:67,64:30:131:0.489:2	./.	0/1:46,58:28:104:0.558:2	./.
chr2	173686663	rs2258180	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,41:31:74:0.554:2	0/1:28,21:32:49:0.429:2	./.	0/1:47,62:31:109:0.569:2	0/1:0,64:30:64:1.00:2	./.	0/1:38,33:30:71:0.465:2	./.	./.	0/1:37,30:31:67:0.448:2	0/1:61,59:31:120:0.492:2
chr2	173848287	rs17301507	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,34:30:87:0.391:2
chr2	173883523	rs61741759	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,26:33:62:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr2	174055646	rs35853276	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,22:33:38:0.579:2	0/1:5,10:31:15:0.667:2	./.	0/1:0,22:32:22:1.00:2	0/1:11,12:31:23:0.522:2	./.	0/1:10,7:33:17:0.412:2	0/1:15,12:31:27:0.444:2	./.	./.	./.
chr2	174068513	rs11899707	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:33:57:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,80:33:80:1.00:2	0/1:1,44:33:45:0.978:2	0/1:0,67:33:67:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,83:34:83:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,78:33:78:1.00:2
chr2	174128513	rs3769148	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:59,44:31:103:0.427:2	0/1:0,71:32:71:1.00:2	./.	0/1:54,52:32:106:0.491:2	0/1:5,119:32:124:0.960:2	./.	./.	0/1:72,45:32:117:0.385:2
chr2	174131392	rs35608243	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:30:38:0.974:2	0/1:0,19:31:19:1.00:2	./.	0/1:21,41:31:62:0.661:2	./.	0/1:9,19:31:28:0.679:2	./.	./.	./.	./.	0/1:32,21:31:53:0.396:2
chr2	174227996	rs187490983	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,53:32:113:0.469:2	./.	./.	./.	./.
chr2	174777865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:34:180:0.022:2	./.	./.
chr2	174819731	rs199556042	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,11:14:110:0.100:2	./.	./.	./.	0/1:70,11:14:81:0.136:2	0/1:108,15:17:124:0.122:2
chr2	174820750	rs1047640	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,49:32:109:0.450:2	0/1:35,23:33:58:0.397:2	./.	0/1:60,67:33:127:0.528:2	./.	./.	./.	./.	0/1:69,64:32:133:0.481:2	./.	./.
chr2	174943806	rs376640155	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:33:61:0.541:2	./.	./.	./.	./.
chr2	174946760	rs11558990	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,18:33:51:0.353:2	0/1:5,11:32:16:0.688:2	./.	0/1:28,28:32:56:0.500:2	0/1:15,10:32:25:0.400:2	0/1:31,23:32:54:0.426:2	./.	0/1:40,24:32:64:0.375:2	./.	0/1:29,18:33:47:0.383:2	0/1:0,55:31:55:1.00:2
chr2	175087855	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:30:131:0.031:2	./.
chr2	175087864	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,8:32:120:0.067:2	./.
chr2	175094056	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,5:32:180:0.028:2	./.	./.	./.	./.	./.	./.
chr2	175094122	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.
chr2	175111504	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,6:32:138:0.043:2	./.	0/1:114,5:32:119:0.042:2	./.	./.	./.	./.	./.
chr2	175111536	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.
chr2	175199869	rs56000618	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,64:30:147:0.435:2	0/1:6,114:32:120:0.950:2	./.	0/1:0,136:32:136:1.00:2	./.	./.
chr2	175200903	rs35548534	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:32:102:0.471:2	0/1:41,25:32:66:0.379:2	./.	0/1:0,66:33:66:1.00:2	./.	./.
chr2	175201299	rs62174227	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.
chr2	175260355	rs719161	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,66:30:150:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr2	175263063	rs10497410	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:32:35:0.600:2	0/1:8,10:32:18:0.556:2	0/1:17,8:33:25:0.320:2	0/1:0,39:32:39:1.00:2	./.	./.
chr2	175289314	rs17255817	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,39:30:88:0.443:2	0/1:36,18:29:54:0.333:2	./.	./.	0/1:40,39:29:79:0.494:2	./.	0/1:42,39:30:81:0.481:2	./.	./.	./.	./.
chr2	175292504	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	175300997	rs6757461	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:1,31:32:32:0.969:2	0/1:5,4:32:9:0.444:2	0/1:55,51:32:106:0.481:2	0/1:0,35:31:35:1.00:2	0/1:45,25:31:70:0.357:2	0/1:55,29:31:84:0.345:2	0/1:50,26:32:76:0.342:2	./.	0/1:50,44:32:94:0.468:2	0/1:1,76:32:77:0.987:2
chr2	175436576	rs112447307	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:28:35:0.514:2
chr2	175436940	rs4972450	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,41:32:81:0.506:2	0/1:21,26:32:47:0.553:2	0/1:0,14:31:14:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,63:32:63:1.00:2
chr2	175614716	rs2229957	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,106:29:193:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr2	175619102	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.
chr2	175957930	rs61740493	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.
chr2	176032376	rs79402775	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:31:50:0.440:2	./.	./.
chr2	176032383	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr2	176043097	rs8106	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,72:30:187:0.385:2
chr2	176829117	rs34897061	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,23:32:83:0.277:2	./.	./.	./.
chr2	176857067	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	176948153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	./.	./.	./.	./.	./.
chr2	176957822	rs2518053	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:18:3:1.00:2	./.	./.	./.	./.
chr2	176958087	rs187698441	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,58:30:111:0.523:2	./.	./.	./.	./.	./.	./.
chr2	176959245	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.	./.
chr2	176964759	rs201839891	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	176964904	rs847151	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:31:28:1.00:2	0/1:0,14:31:14:1.00:2	./.	./.	0/1:23,9:30:32:0.281:2	0/1:13,9:30:22:0.409:2	0/1:9,8:31:17:0.471:2	0/1:1,23:31:24:0.958:2	0/1:15,12:32:27:0.444:2	0/1:12,10:30:22:0.455:2	./.
chr2	176965086	rs35817516	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,35:29:63:0.556:2	0/1:27,23:30:50:0.460:2	./.	./.	0/1:73,74:29:147:0.503:2	./.	./.	./.	0/1:64,53:29:117:0.453:2	./.	./.
chr2	176973687	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:27:60:0.067:2
chr2	176973807	rs138394594	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:30:43:0.419:2	./.	./.	./.
chr2	176981933	rs149038150	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,56:33:113:0.496:2	./.	./.	./.	./.	./.
chr2	176983923	rs33913965	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,36:31:75:0.480:2	./.
chr2	176988015	rs711821	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,38:31:92:0.413:2	./.	./.	./.	./.	./.	./.	./.
chr2	177016728	rs34727427	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	0/1:12,11:31:24:0.478:2	./.	0/1:16,6:32:22:0.273:2	./.	0/1:19,15:33:34:0.441:2	./.	./.
chr2	177033995	rs141168805	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,54:32:105:0.519:2	./.	./.	./.	./.	./.
chr2	177034121	rs34729309	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,39:31:62:0.629:2	./.	0/1:23,27:32:50:0.540:2	./.	0/1:20,28:31:48:0.583:2	./.	./.
chr2	177036754	rs1051929	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	0/1:1,3:33:4:0.750:2	0/1:5,5:31:10:0.500:2	0/1:0,4:28:4:1.00:2	0/1:1,4:31:5:0.800:2	0/1:0,3:30:3:1.00:2	./.	./.
chr2	177054769	rs6710142	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,37:29:62:0.597:2	./.	./.	./.	0/1:28,49:30:79:0.636:2	./.	./.
chr2	177135147	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.
chr2	178084026	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:33:24:0.208:2	./.	./.
chr2	178096690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr2	178346854	rs115580413	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,38:32:93:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr2	178415550	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	178415566	rs185099655	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	178416283	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:33:170:0.024:2	./.	./.	./.	./.	./.	./.	0/1:177,7:32:184:0.038:2
chr2	178416902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.
chr2	178417142	rs11694988	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,65:32:66:0.985:2	0/1:0,24:31:24:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,53:30:54:0.981:2	0/1:31,26:31:57:0.456:2	0/1:0,53:30:53:1.00:2	0/1:0,53:31:53:1.00:2	0/1:38,29:30:67:0.433:2	0/1:44,33:32:77:0.429:2	0/1:19,21:32:40:0.525:2	0/1:0,74:30:74:1.00:2
chr2	178417225	rs11695035	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,19:30:20:0.950:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,24:30:24:1.00:2	0/1:7,12:30:19:0.632:2	0/1:0,22:30:22:1.00:2	0/1:2,15:30:17:0.882:2	0/1:18,10:29:28:0.357:2	0/1:13,6:32:19:0.316:2	0/1:11,3:32:14:0.214:2	0/1:0,29:30:29:1.00:2
chr2	178417641	rs116634324	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,44:32:122:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr2	178481687	rs199946796	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,5:32:130:0.039:2	./.	./.	./.	./.	./.	./.
chr2	178481818	rs10497497	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:32:183:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,190:32:191:0.995:2	0/1:0,160:31:160:1.00:2	0/1:2,185:31:187:0.989:2	0/1:0,183:32:184:1.00:2	0/1:98,102:31:200:0.510:2	0/1:80,102:32:182:0.560:2	0/1:81,88:32:169:0.521:2	0/1:0,180:32:180:1.00:2
chr2	178482094	rs28630685	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,39:31:43:0.907:2	0/1:1,26:31:27:0.963:2	0/1:0,5:30:5:1.00:2	0/1:0,20:30:21:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,14:30:15:1.00:2	0/1:133,10:30:143:0.070:2	0/1:115,16:32:131:0.122:2	0/1:117,11:31:128:0.086:2	0/1:1,57:31:58:0.983:2
chr2	178482269	rs61743008	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,57:30:112:0.509:2	./.	./.	./.	./.	./.	./.
chr2	178482560	rs61164370	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,71:30:193:0.368:2	0/1:112,83:30:195:0.426:2	./.	./.	./.	./.	./.	./.
chr2	178482594	rs61742858	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,56:31:58:0.966:2	./.	./.	0/1:105,90:31:195:0.462:2	0/1:62,134:32:196:0.684:2	./.	./.	./.	./.
chr2	178482596	rs3813257	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,58:32:199:0.291:2	./.	./.	./.	0/1:113,82:32:195:0.421:2
chr2	178482698	rs3813256	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,74:32:187:0.396:2	./.	./.	./.	./.	./.	./.	./.
chr2	178482771	rs59353759	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,77:30:145:0.531:2	./.	./.	./.	./.	./.	./.	./.
chr2	178483470	rs111468773	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,35:32:83:0.422:2	./.	./.	./.	./.	./.	./.
chr2	178483576	rs80201392	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,30:31:80:0.375:2	./.	./.	./.
chr2	178483577	rs75024536	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,30:31:80:0.375:2	./.	./.	./.
chr2	178483595	rs78801448	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,51:32:87:0.586:2	./.	./.	./.	./.	./.	./.
chr2	178483621	rs73977671	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:32:75:0.520:2	./.	./.	./.	0/1:60,40:29:100:0.400:2
chr2	178528641	rs61306957	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,26:32:73:0.356:2	./.	./.	./.	./.	./.	./.	./.
chr2	178540371	rs113351119	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,47:32:112:0.420:2
chr2	178540394	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2
chr2	178682603	rs6720891	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,36:31:37:0.973:2	0/1:0,25:31:25:1.00:2	./.	0/1:35,21:31:56:0.375:2	./.	./.	0/1:29,10:32:39:0.256:2	./.	0/1:0,46:31:46:1.00:2	./.	0/1:39,16:31:55:0.291:2
chr2	178682655	rs3821010	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:33:49:0.980:2	0/1:0,29:32:29:1.00:2	0/1:7,4:34:11:0.364:2	0/1:34,36:33:70:0.514:2	./.	./.	0/1:36,16:31:52:0.308:2	./.	0/1:0,73:33:73:1.00:2	./.	0/1:53,25:32:78:0.321:2
chr2	178762824	rs71423514	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	0/1:28,19:33:47:0.404:2	./.
chr2	178769917	rs13012088	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,19:32:54:0.352:2	./.
chr2	178936373	rs1435573	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:32:62:0.984:2	0/1:0,40:31:40:1.00:2	0/1:11,7:34:18:0.389:2	0/1:44,26:32:71:0.371:2	0/1:0,67:32:67:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,70:33:70:1.00:2	0/1:37,32:33:69:0.464:2	0/1:0,76:32:76:1.00:2
chr2	178936475	rs78496158	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,12:29:25:0.500:2	./.	./.	./.	./.	./.	./.
chr2	178936614	rs6433711	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,8:33:8:1.00:2	0/1:32,53:32:85:0.624:2	0/1:0,69:32:69:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,82:33:82:1.00:2
chr2	178969039	rs75672043	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,23:30:59:0.390:2	0/1:20,17:29:37:0.459:2	./.	./.	0/1:21,13:29:34:0.382:2	./.	0/1:19,10:29:29:0.345:2	./.	./.	./.	./.
chr2	178969122	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,3:37:101:0.030:2	./.	./.	./.
chr2	178988611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.
chr2	179188959	rs35032920	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:32:75:0.440:2	./.	./.
chr2	179201048	rs16866263	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:33:65:0.492:2	./.	./.
chr2	179203797	rs1434087	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:13,11:32:24:0.458:2	0/1:0,23:32:23:1.00:2	0/1:0,27:32:27:1.00:2	./.	0/1:0,17:33:17:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,31:32:31:1.00:2
chr2	179306397	rs61746229	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:30:122:0.033:2	./.
chr2	179318974	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.	./.
chr2	179325735	rs17304212	C	T,G	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:33:13:0.615:2	./.	./.	./.	0/1:31:42:0.976:2	./.	0/1:33:121:0.504:2	0/1:32:75:0.440:2	./.
chr2	179350414	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.
chr2	179355459	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:156,5:29:161:0.031:2	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.
chr2	179358665	rs2303536	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,74:30:175:0.423:2	0/1:83,48:30:131:0.366:2	./.	./.	./.	./.	0/1:74,62:30:136:0.456:2	0/1:101,75:31:176:0.426:2
chr2	179367086	rs967507	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	0/1:2,5:31:7:0.714:2	0/1:11,11:33:22:0.500:2
chr2	179368518	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:138,5:31:143:0.035:2	./.	./.	0/1:180,6:30:186:0.032:2	0/1:97,4:30:101:0.040:2	./.	0/1:130,5:30:135:0.037:2	./.	0/1:172,5:30:177:0.028:2	0/1:153,5:30:158:0.032:2	0/1:186,9:30:195:0.046:2
chr2	179392298	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	179395067	rs56207956	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:33:25:1.00:2	./.	0/1:23,28:34:51:0.549:2	0/1:19,18:32:37:0.486:2	./.
chr2	179395542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179395554	rs66961115	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,52:31:173:0.301:2
chr2	179395555	rs67254537	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,52:31:173:0.301:2
chr2	179395573	rs56324595	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,67:31:183:0.366:2
chr2	179395958	rs3813250	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,84:29:159:0.528:2	./.	./.	0/1:123,67:30:190:0.353:2	./.	0/1:115,83:30:198:0.419:2	0/1:104,84:30:188:0.447:2
chr2	179396162	rs56308529	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,30:29:48:0.625:2	./.
chr2	179396354	rs3829748	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,42:30:99:0.424:2	./.	./.	0/1:74,42:31:116:0.362:2	./.	0/1:45,38:31:83:0.458:2	./.
chr2	179397561	rs3829747	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,91:31:178:0.511:2	./.	./.	0/1:94,100:31:194:0.515:2	./.	0/1:79,89:31:168:0.530:2	./.
chr2	179397686	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,70:32:148:0.473:2	0/1:52,28:31:80:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179397979	rs72629785	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:34:167:0.024:2	./.	./.
chr2	179398823	rs2857265	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,54:31:143:0.378:2	./.	./.	0/1:105,73:31:178:0.410:2	./.	0/1:69,61:32:131:0.469:2	./.
chr2	179400263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179401742	rs55742743	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,35:32:61:0.574:2	./.
chr2	179403310	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2
chr2	179404402	rs149001703	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	./.	./.
chr2	179406191	rs3731749	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,85:32:185:0.459:2	./.	./.	0/1:108,81:32:189:0.429:2	./.	0/1:112,68:32:181:0.378:2	./.
chr2	179410282	rs62621206	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,90:29:200:0.450:2	./.	./.	./.	./.	./.
chr2	179410693	rs72648259	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,76:32:156:0.487:2	./.	./.	./.	./.	./.
chr2	179412452	rs67665715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,79:32:194:0.407:2
chr2	179413110	rs3731748	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,57:31:127:0.449:2	./.	./.	0/1:59,82:32:141:0.582:2	./.	0/1:43,53:32:96:0.552:2	./.
chr2	179414318	rs747122	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,36:32:70:0.514:2
chr2	179416556	rs11897366	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,43:30:99:0.434:2
chr2	179416659	rs11887722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,35:32:86:0.407:2
chr2	179418346	rs72648237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:29:45:0.489:2	./.	./.	./.	./.	./.
chr2	179419223	rs201241167	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:24,6:20:30:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,10:19:47:0.213:2	0/1:52,7:20:59:0.119:2
chr2	179419226	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,10:15:63:0.159:2
chr2	179421694	rs9808377	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,64:32:130:0.492:2	./.	0/1:152,4:32:156:0.026:2	0/1:82,75:32:157:0.478:2	./.	0/1:46,78:32:124:0.629:2	0/1:81,50:31:131:0.382:2
chr2	179421791	rs183013408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,79:32:148:0.534:2	./.	./.	./.	./.	./.	./.
chr2	179424048	rs55972010	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:60,36:32:96:0.375:2	0/1:35,26:32:61:0.426:2	./.	./.	0/1:28,32:32:60:0.533:2	./.	./.	./.	./.	./.	./.
chr2	179426406	rs73036373	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,68:29:137:0.496:2
chr2	179426477	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2
chr2	179426989	rs148067743	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,43:30:105:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr2	179427186	rs2366751	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,43:30:86:0.500:2	./.	./.	0/1:92,50:30:142:0.352:2	./.	0/1:72,30:30:102:0.294:2	0/1:83,63:29:146:0.432:2
chr2	179427536	rs3829746	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,36:29:62:0.581:2	./.	./.	0/1:29,36:28:65:0.554:2	./.	0/1:25,36:29:61:0.590:2	0/1:57,64:29:122:0.529:2
chr2	179427544	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,27:31:64:0.422:2	./.	./.	./.
chr2	179428061	rs11896637	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,73:32:145:0.503:2
chr2	179429188	rs368443217	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179430596	rs200181804	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,32:32:72:0.444:2	./.	./.	./.	./.	./.
chr2	179430997	rs3731746	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,67:31:105:0.638:2	./.	./.	0/1:68,56:31:124:0.452:2	./.	0/1:58,49:32:107:0.458:2	./.
chr2	179432185	rs12463674	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,23:33:55:0.418:2	0/1:12,12:33:24:0.500:2	0/1:1,5:31:6:0.833:2	./.	./.	./.	./.	0/1:27,27:32:54:0.500:2	./.	./.	0/1:38,35:32:73:0.479:2
chr2	179435337	rs6732060	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,69:29:141:0.489:2
chr2	179436020	rs744426	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,60:32:143:0.420:2	./.	./.	0/1:93,77:31:170:0.453:2	./.	0/1:90,42:32:132:0.318:2	./.
chr2	179436669	rs201797603	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,14:12:94:0.151:2	./.	0/1:109,19:13:128:0.148:2	./.	./.	0/1:78,14:15:93:0.152:2
chr2	179439998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr2	179440029	rs12464787	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,47:31:99:0.480:2	0/1:21,33:31:54:0.611:2	0/1:5,6:31:11:0.545:2	0/1:133,5:31:138:0.036:2	./.	./.	./.	0/1:98,76:31:174:0.437:2	./.	./.	0/1:42,69:31:111:0.622:2
chr2	179441295	rs72646885	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,63:29:121:0.521:2	./.	./.	./.	./.	./.
chr2	179441917	rs72646881	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,59:32:122:0.484:2
chr2	179443404	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.
chr2	179443540	rs10497517	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:32:62:0.419:2
chr2	179443546	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,36:32:63:0.571:2
chr2	179444768	rs4145333	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,119:32:120:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,148:32:148:1.00:2
chr2	179444939	rs2303838	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,28:30:55:0.509:2	./.	./.	0/1:22,38:30:60:0.633:2	./.	0/1:54,17:31:71:0.239:2	./.
chr2	179447848	rs4894029	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,4:33:181:0.022:2	0/1:84,64:29:148:0.432:2	./.	./.	0/1:99,56:29:155:0.361:2	./.	0/1:76,79:30:156:0.510:2	0/1:68,72:29:140:0.514:2
chr2	179451420	rs2042996	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,91:31:188:0.484:2	./.	0/1:189,6:30:195:0.031:2	0/1:102,92:32:194:0.474:2	./.	0/1:81,76:32:157:0.484:2	0/1:93,84:32:177:0.475:2
chr2	179452454	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr2	179454394	rs1560221	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,56:31:101:0.554:2	./.	0/1:116,4:32:120:0.033:2	0/1:72,83:32:155:0.535:2	./.	0/1:56,64:32:120:0.533:2	0/1:87,99:32:186:0.532:2
chr2	179454817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr2	179455207	rs2163009	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,72:31:198:0.364:2	./.	./.	0/1:113,83:30:196:0.423:2	./.	0/1:106,87:29:193:0.451:2	0/1:108,84:30:193:0.438:2
chr2	179455962	rs72646843	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,56:32:119:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr2	179457147	rs16866406	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,29:30:52:0.558:2	./.	./.	0/1:36,36:31:72:0.500:2	./.	0/1:45,33:31:78:0.423:2	./.
chr2	179458591	rs2288569	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,15:30:40:0.375:2	./.	./.	0/1:24,30:31:54:0.556:2	./.	0/1:26,20:31:46:0.435:2	./.
chr2	179462494	rs35833641	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:45,43:29:88:0.489:2	0/1:37,30:30:67:0.448:2	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	0/1:79,55:29:134:0.410:2	./.	./.	0/1:67,71:30:138:0.514:2
chr2	179464527	rs1001238	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,12:28:22:0.545:2	./.	./.	0/1:34,30:29:64:0.469:2	./.	0/1:17,15:28:32:0.469:2	0/1:45,42:29:87:0.483:2
chr2	179472597	rs73036398	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,70:32:150:0.467:2
chr2	179475791	rs372419267	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.	./.	./.
chr2	179482089	rs72677237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,47:31:111:0.423:2	./.	./.	./.	./.	./.
chr2	179484965	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.
chr2	179498042	rs6723526	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,55:32:105:0.524:2	0/1:45,32:33:77:0.416:2	0/1:1,8:33:9:0.889:2	./.	0/1:43,37:31:80:0.463:2	./.	./.	./.	./.	./.	./.
chr2	179516888	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:108,4:36:112:0.036:2	0/1:90,4:34:94:0.043:2	./.	0/1:133,5:33:138:0.036:2	0/1:73,17:33:91:0.189:2	0/1:150,7:33:158:0.045:2	0/1:67,14:34:81:0.173:2	0/1:101,4:30:105:0.038:2	0/1:144,9:36:154:0.059:2	0/1:143,17:33:160:0.106:2	0/1:152,10:31:162:0.062:2
chr2	179517230	rs73038314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,14:32:51:0.275:2
chr2	179523797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,5:30:165:0.030:2	./.	./.	./.	./.	./.	./.
chr2	179528378	rs2163008	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,31:32:49:0.633:2
chr2	179530162	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.
chr2	179537411	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179539046	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.
chr2	179543217	rs35112591	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2	./.	./.	./.	./.	0/1:20,9:33:29:0.310:2	./.
chr2	179545859	rs36051007	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	0/1:16,8:32:24:0.333:2	./.	./.	0/1:24,22:32:46:0.478:2
chr2	179547454	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,16:32:180:0.089:2	./.	./.	./.	./.
chr2	179554294	rs182934463	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,67:30:121:0.554:2	./.	./.	./.
chr2	179554305	rs2244492	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,50:33:92:0.543:2	0/1:34,23:32:57:0.404:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	0/1:60,42:32:102:0.412:2	./.	./.	0/1:0,103:32:103:1.00:2
chr2	179558366	rs2042995	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,28:30:80:0.350:2	./.	./.	0/1:78,57:29:135:0.422:2	./.	0/1:58,49:30:108:0.458:2	0/1:112,79:29:191:0.414:2
chr2	179560847	rs73038324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,68:32:177:0.384:2
chr2	179569400	rs2742344	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:32:68:0.382:2
chr2	179569436	rs2742343	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:33:34:0.412:2
chr2	179574384	rs2742332	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,86:32:190:0.453:2
chr2	179575511	rs72648998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,64:32:135:0.474:2	./.
chr2	179577871	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179578730	rs2562839	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,41:32:105:0.390:2	./.	./.	0/1:56,52:33:108:0.481:2	./.	0/1:39,41:32:80:0.513:2	0/1:78,51:33:129:0.395:2
chr2	179579093	rs12693164	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,40:32:85:0.471:2	./.	./.	0/1:67,54:33:121:0.446:2	./.	0/1:44,51:33:95:0.537:2	./.
chr2	179579212	rs2562838	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,32:32:44:0.727:2	./.	./.	0/1:38,27:32:65:0.415:2	./.	0/1:26,21:31:47:0.447:2	0/1:37,46:33:83:0.554:2
chr2	179579822	rs2562836	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,75:29:182:0.412:2	./.	./.	0/1:97,87:30:184:0.473:2	./.	0/1:98,95:30:193:0.492:2	0/1:98,91:31:190:0.481:2
chr2	179579935	rs141856116	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,54:31:142:0.380:2
chr2	179581897	rs199619070	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,79:33:156:0.506:2	./.	./.
chr2	179582063	rs72648986	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2
chr2	179582327	rs13390491	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,67:31:158:0.424:2	./.	./.	0/1:95,94:31:189:0.497:2	./.	0/1:102,75:31:177:0.424:2	./.
chr2	179582537	rs2627043	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	./.	0/1:12,8:32:20:0.400:2	./.	0/1:14,11:32:25:0.440:2	0/1:10,9:32:19:0.474:2
chr2	179582853	rs72648982	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.	./.	./.	./.	./.
chr2	179583317	rs72648978	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,17:33:38:0.447:2	0/1:19,15:33:34:0.441:2	./.	0/1:25,28:32:53:0.528:2	0/1:27,18:32:45:0.400:2	./.	./.	./.	./.	./.	./.
chr2	179583496	rs16866465	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.	0/1:28,42:33:70:0.600:2	./.	0/1:17,12:32:29:0.414:2	./.
chr2	179585266	rs2562831	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,46:32:46:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,78:32:78:1.00:2
chr2	179586604	rs72648970	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:69,69:33:138:0.500:2	0/1:45,50:32:95:0.526:2	./.	./.	0/1:104,64:32:168:0.381:2	./.	./.	./.	./.	./.	./.
chr2	179587130	rs12693166	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,17:33:25:0.680:2	./.	./.	0/1:6,14:32:20:0.700:2	./.	0/1:8,14:32:22:0.636:2	./.
chr2	179588996	rs72648962	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,55:31:101:0.545:2
chr2	179590329	rs17355460	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:33:58:0.379:2	./.	./.	./.	./.	./.
chr2	179591958	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179592370	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,64:29:118:0.542:2	./.	./.	./.	./.	./.
chr2	179593449	rs72648954	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,59:30:191:0.309:2
chr2	179597808	rs72648935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:32:105:0.452:2
chr2	179598228	rs12993099	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:32:22:0.545:2	./.	./.	./.
chr2	179600563	rs2742348	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,8:30:8:1.00:2	0/1:1,106:31:107:0.991:2	0/1:0,67:31:67:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,128:32:128:1.00:2
chr2	179600648	rs2742347	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,66:32:144:0.458:2	0/1:102,66:32:168:0.393:2
chr2	179604160	rs1883085	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.
chr2	179604366	rs2562829	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	./.
chr2	179604742	rs1883084	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:32:19:0.579:2	./.
chr2	179605180	rs746578	C	A,T	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:30:179:0.425:2	./.	./.	0/2:31:196:0.490:2	./.	0/1:32:187:0.541:2	./.
chr2	179605380	rs34618570	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179605705	rs2742357	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:33:86:0.453:2	./.
chr2	179606538	rs2627037	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:33:40:0.475:2	0/1:42,37:33:79:0.468:2
chr2	179611711	rs66677602	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,53:32:150:0.353:2	./.
chr2	179612383	rs72648907	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,48:33:91:0.527:2	./.	./.
chr2	179612883	rs139669372	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,22:32:61:0.361:2	./.	./.	./.	./.	./.
chr2	179613191	rs140909116	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,100:33:185:0.541:2	./.	./.	./.	./.	./.
chr2	179614952	rs10803917	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,170:33:171:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,192:33:192:1.00:2	0/1:0,181:32:182:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,178:34:178:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,176:33:176:1.00:2
chr2	179615060	rs143253411	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,62:33:163:0.380:2
chr2	179615386	rs116593093	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:33:43:0.419:2
chr2	179615887	rs922984	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:91:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,75:33:75:1.00:2	0/1:1,36:31:37:0.973:2	0/1:0,81:32:81:1.00:2	0/1:0,52:32:52:1.00:2	0/1:2,55:32:57:0.965:2	0/1:0,78:33:78:1.00:2	0/1:30,41:32:71:0.577:2	0/1:69,43:32:112:0.384:2
chr2	179615931	rs922985	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:33:123:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,127:32:128:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,105:33:105:1.00:2	0/1:0,184:33:184:1.00:2
chr2	179615994	rs922986	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:30:109:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,126:29:126:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,147:29:147:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,137:29:137:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,172:29:172:1.00:2
chr2	179620951	rs7585334	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:1,30:31:31:0.968:2	0/1:0,4:31:4:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,44:32:44:1.00:2	0/1:18,10:32:28:0.357:2	0/1:0,43:31:43:1.00:2
chr2	179621184	rs72955212	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,57:31:124:0.463:2
chr2	179621477	rs6433728	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,116:32:117:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,88:31:88:1.00:2
chr2	179621503	rs72955213	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,25:31:85:0.294:2
chr2	179622407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	179623758	rs2291310	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:32:114:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,121:31:121:1.00:2	0/1:3,89:31:92:0.967:2	0/1:0,128:31:128:1.00:2	0/1:0,96:32:97:1.00:2	0/1:3,117:31:120:0.975:2	0/1:0,170:32:170:1.00:2	0/1:69,62:32:131:0.473:2	0/1:3,154:32:157:0.981:2
chr2	179628918	rs34819099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,32:32:51:0.627:2	./.
chr2	179628940	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.	./.	./.	./.
chr2	179629363	rs4894043	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,92:32:92:1.00:2
chr2	179629461	rs2291311	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,90:31:90:1.00:2	0/1:1,78:31:79:0.987:2	0/1:0,77:31:77:1.00:2	0/1:2,84:32:86:0.977:2	0/1:0,83:32:83:1.00:2	0/1:0,78:33:78:1.00:2	0/1:30,21:32:51:0.412:2	0/1:0,86:32:86:1.00:2
chr2	179631214	rs2291312	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,54:32:127:0.425:2	./.
chr2	179634421	rs200875815	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,10:15:64:0.159:2	./.	0/1:6,6:16:12:0.500:2	0/1:37,28:13:65:0.431:2	0/1:52,27:15:79:0.342:2	0/1:51,42:17:93:0.452:2	0/1:54,32:12:86:0.372:2	0/1:46,36:14:82:0.439:2	./.	0/1:43,8:16:51:0.157:2	0/1:54,17:16:73:0.239:2
chr2	179634936	rs2306636	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,66:32:143:0.462:2	./.
chr2	179637861	rs56142888	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,33:32:86:0.384:2	./.
chr2	179638238	rs2291306	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,27:31:50:0.540:2	0/1:16,8:28:24:0.333:2	./.	0/1:22,20:30:42:0.476:2	0/1:29,18:30:47:0.383:2	./.	./.	./.	./.	./.	./.
chr2	179638721	rs4894048	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,39:33:100:0.390:2
chr2	179641975	rs12476289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,29:32:70:0.414:2	./.
chr2	179644035	rs1552280	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,86:31:87:0.989:2	0/1:0,117:31:117:1.00:2
chr2	179644160	rs2291308	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:33:34:0.382:2	./.
chr2	179644855	rs10497520	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:33:117:1.00:2	0/1:1,81:33:82:0.988:2	0/1:0,12:33:12:1.00:2	0/1:0,145:33:145:1.00:2	0/1:33,52:32:85:0.612:2	0/1:0,126:32:127:1.00:2	0/1:0,93:33:93:1.00:2	0/1:2,130:33:132:0.985:2	0/1:0,156:34:156:1.00:2	0/1:70,56:33:126:0.444:2	0/1:111,71:33:182:0.390:2
chr2	179647546	rs55863869	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,46:31:73:0.630:2	./.
chr2	179650408	rs35813871	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,27:30:86:0.314:2	./.	0/1:1,80:30:81:0.988:2	./.	./.	0/1:60,49:32:109:0.450:2	./.	./.
chr2	179650701	rs6715406	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:61,49:30:110:0.445:2	0/1:40,18:31:58:0.310:2	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	0/1:2,145:30:147:0.986:2	./.	./.	0/1:73,48:30:121:0.397:2
chr2	179658175	rs11537855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,3:32:23:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179659892	rs148094198	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,37:33:89:0.416:2	./.	./.	./.	./.	./.	./.	./.
chr2	179659912	rs16866538	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,43:31:99:0.434:2	./.	./.	./.	./.	./.	./.
chr2	179665196	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:145:0.028:2	./.
chr2	179702067	rs369418999	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,38:31:102:0.373:2	./.	./.	./.	./.	./.	./.	./.
chr2	179702073	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.
chr2	179702268	rs1032283	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,73:33:73:1.00:2
chr2	179702437	rs13419085	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,31:33:66:0.470:2	0/1:27,28:32:55:0.509:2	./.	./.	0/1:66,48:32:114:0.421:2	./.	./.	./.	./.	./.	./.
chr2	179721032	rs12464157	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,64:32:116:0.552:2	./.
chr2	179721046	rs17362588	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,12:31:50:0.240:2	./.	0/1:54,59:33:113:0.522:2	0/1:56,39:33:95:0.411:2	./.
chr2	179730505	rs150991367	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,62:32:112:0.554:2	./.	./.	./.
chr2	179730604	rs144766496	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,22:33:77:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr2	179732845	rs12988301	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,41:32:100:0.410:2	./.	./.	./.	./.	0/1:36,46:33:82:0.561:2
chr2	179749747	rs112292444	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,54:32:115:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr2	179751485	rs114129666	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:29:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179753366	rs182748406	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,37:32:105:0.352:2	./.	./.	./.	./.	./.	./.
chr2	179770175	rs34883828	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,51:30:87:0.586:2	./.	./.	0/1:64,52:32:116:0.448:2	./.	./.
chr2	179783470	rs72961212	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,37:34:120:0.308:2	./.	./.
chr2	179826072	rs61744343	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,90:30:199:0.452:2
chr2	179839833	rs10930846	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:30:40:0.400:2	0/1:14,14:30:28:0.500:2	./.	0/1:18,18:31:36:0.500:2	./.	./.	./.	0/1:31,36:30:67:0.537:2
chr2	179914640	rs61397643	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,43:31:99:0.434:2	0/1:19,40:32:59:0.678:2	./.	./.	0/1:49,49:30:98:0.500:2	./.	0/1:63,53:31:116:0.457:2	./.	./.	./.	./.
chr2	179979930	rs2289993	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,47:32:101:0.465:2	0/1:32,20:32:52:0.385:2	./.	0/1:48,70:33:118:0.593:2	0/1:38,46:33:84:0.548:2	./.	./.	./.	./.	./.	./.
chr2	179986553	rs56336305	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,58:32:97:0.598:2	./.	./.	./.	./.	./.	./.
chr2	180047908	rs6757681	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,47:33:47:1.00:2	./.	0/1:0,87:32:87:1.00:2	0/1:0,67:32:67:1.00:2	0/1:46,24:32:70:0.343:2	0/1:0,92:33:92:1.00:2	0/1:0,89:33:89:1.00:2	0/1:43,54:35:97:0.557:2	0/1:44,50:33:94:0.532:2	0/1:53,73:34:126:0.579:2
chr2	180308028	rs2367796	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	./.	0/1:7,7:32:14:0.500:2
chr2	180311444	rs2271761	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,63:33:116:0.543:2	./.
chr2	180725568	rs146754630	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,10:27:48:0.208:2	./.	./.	./.	./.
chr2	180810180	rs6433817	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,129:32:132:0.977:2	0/1:1,84:32:85:0.988:2	0/1:0,25:32:25:1.00:2	0/1:62,38:32:100:0.380:2	0/1:49,37:31:86:0.430:2	0/1:0,101:31:101:1.00:2	0/1:44,23:32:67:0.343:2	0/1:2,106:32:108:0.981:2	./.	0/1:1,124:32:125:0.992:2	0/1:1,168:32:170:0.994:2
chr2	180810202	rs1046356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,59:33:151:0.393:2	./.	./.
chr2	180810264	rs6433818	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,187:32:187:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,33:32:33:1.00:2	0/1:1,193:32:194:0.995:2	0/1:79,53:32:132:0.402:2	0/1:0,181:32:181:1.00:2	0/1:1,115:32:116:0.991:2	0/1:0,190:32:190:1.00:2	0/1:117,78:33:195:0.400:2	0/1:0,191:33:191:1.00:2	0/1:0,186:33:186:1.00:2
chr2	180810358	rs71425650	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.	./.	./.	./.
chr2	180815412	rs17778270	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,46:30:123:0.374:2	./.	./.	./.	./.	./.
chr2	180835792	rs3768837	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:2,43:31:45:0.956:2	0/1:0,4:30:4:1.00:2	0/1:0,53:31:53:1.00:2	0/1:31,14:30:45:0.311:2	0/1:0,48:30:48:1.00:2	0/1:1,46:30:47:0.979:2	0/1:0,67:31:67:1.00:2	./.	0/1:1,37:30:38:0.974:2	0/1:0,54:30:54:1.00:2
chr2	181854692	rs61080739	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,46:31:46:1.00:2	0/1:10,5:30:15:0.333:2	0/1:76,39:30:115:0.339:2	./.	0/1:54,32:30:86:0.372:2	./.	./.	./.	./.	0/1:59,47:31:106:0.443:2
chr2	181922476	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.
chr2	182347072	rs2305588	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,32:32:49:0.653:2	./.	./.	./.	0/1:23,20:31:43:0.465:2	./.	0/1:16,17:32:33:0.515:2	0/1:26,30:32:56:0.536:2
chr2	182374534	rs1143674	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,9:32:9:1.00:2	0/1:6,4:33:10:0.400:2	0/1:4,3:27:7:0.429:2	0/1:0,12:31:12:1.00:2	./.
chr2	182395345	rs1143676	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,77:33:155:0.497:2	0/1:47,35:33:82:0.427:2	0/1:6,12:32:18:0.667:2	0/1:80,65:33:145:0.448:2	0/1:0,140:32:140:1.00:2	0/1:1,151:32:152:0.993:2	0/1:0,142:32:142:1.00:2	0/1:73,64:33:137:0.467:2	0/1:0,140:34:140:1.00:2	0/1:0,159:33:159:1.00:2	./.
chr2	182399097	rs7562325	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:27:10:0.500:2	./.	0/1:2,63:28:65:0.969:2	0/1:4,80:29:84:0.952:2	0/1:1,58:28:59:0.983:2	0/1:88,62:29:150:0.413:2	0/1:64,67:29:131:0.511:2	0/1:0,83:29:83:1.00:2	./.
chr2	182399638	rs2124443	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,99:32:99:1.00:2
chr2	182403851	rs10180793	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,111:31:111:1.00:2
chr2	182413259	rs12997453	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,11:30:13:0.846:2	./.	0/1:0,43:32:44:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,57:33:57:1.00:2	0/1:40,32:32:72:0.444:2	0/1:29,49:33:78:0.628:2	0/1:0,62:32:62:1.00:2	./.
chr2	182413344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.
chr2	182414358	rs12623687	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,51:33:132:0.386:2	0/1:52,31:31:83:0.373:2	./.	0/1:82,77:32:159:0.484:2	./.	./.	./.	./.	0/1:95,97:33:192:0.505:2	./.	./.
chr2	182468803	rs61750041	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,8:32:22:0.364:2	0/1:9,8:32:17:0.471:2	./.	0/1:12,13:30:25:0.520:2	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.	./.
chr2	182521578	rs1473295	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	0/1:4,14:31:18:0.778:2	0/1:0,2:31:2:1.00:2	0/1:17,23:32:40:0.575:2	0/1:20,15:31:35:0.429:2	0/1:17,21:31:38:0.553:2	0/1:22,18:31:40:0.450:2	0/1:12,9:29:21:0.429:2	0/1:0,13:33:13:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,9:32:9:1.00:2
chr2	182543455	rs1801262	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,80:33:156:0.513:2	0/1:52,46:32:98:0.469:2	0/1:15,4:31:19:0.211:2	0/1:96,87:32:184:0.475:2	0/1:84,92:32:176:0.523:2	0/1:0,177:33:177:1.00:2	0/1:92,97:32:189:0.513:2	0/1:87,94:32:181:0.519:2	0/1:0,156:33:156:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,173:32:173:1.00:2
chr2	182756900	rs114985669	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,46:32:86:0.535:2	./.
chr2	182763586	rs3731693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:31:72:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr2	182774700	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,5:25:37:0.135:2	./.	./.	./.	./.	./.	./.
chr2	182780126	rs78774163	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,40:31:104:0.385:2	./.	./.	./.
chr2	182780307	rs75716247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,59:32:128:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr2	182780874	rs17647806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,111:30:114:0.974:2
chr2	182792984	rs2303554	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:30:29:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr2	182850829	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	182926144	rs3754930	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,74:32:138:0.536:2	./.
chr2	182981968	rs1882212	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:29:16:0.375:2	./.	0/1:62,35:29:97:0.361:2	./.	./.	./.	./.	0/1:72,42:29:114:0.368:2	0/1:82,75:29:157:0.478:2
chr2	183051220	rs371846119	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:29:96:0.042:2	./.	./.	./.	./.
chr2	183387033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2
chr2	183584755	rs6729801	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,11:32:21:0.524:2	0/1:7,8:29:15:0.533:2	0/1:0,3:32:3:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,16:32:16:1.00:2	0/1:10,4:32:14:0.286:2	0/1:16,10:32:26:0.385:2	0/1:7,5:31:12:0.417:2	0/1:0,19:32:19:1.00:2
chr2	183593697	rs288280	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,34:31:63:0.540:2	0/1:16,14:32:30:0.467:2	0/1:1,11:31:12:0.917:2	0/1:0,43:31:43:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,64:30:65:1.00:2	0/1:3,37:32:40:0.925:2	0/1:46,22:31:68:0.324:2	0/1:0,77:32:77:1.00:2	0/1:28,20:30:48:0.417:2	0/1:0,71:30:71:1.00:2
chr2	183616913	rs61748254	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,13:33:34:0.382:2	0/1:13,13:33:26:0.500:2	./.	./.	./.	./.	./.	./.	0/1:22,18:34:40:0.450:2	./.	./.
chr2	183622547	rs288334	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	0/1:1,3:31:4:0.750:2	0/1:0,2:31:2:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,16:31:16:1.00:2	0/1:2,5:32:7:0.714:2	0/1:0,11:32:11:1.00:2	0/1:6,5:33:11:0.455:2	0/1:0,20:32:20:1.00:2
chr2	183627504	rs192618	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,90:33:168:0.536:2	0/1:34,42:32:76:0.553:2	0/1:0,26:33:26:1.00:2	0/1:0,164:33:164:1.00:2	0/1:1,147:32:149:0.993:2	0/1:2,182:32:184:0.989:2	0/1:3,132:33:135:0.978:2	0/1:98,84:32:182:0.462:2	0/1:0,189:34:189:1.00:2	0/1:69,85:33:154:0.552:2	0/1:0,164:33:164:1.00:2
chr2	183699584	rs7775	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,57:32:138:0.413:2	0/1:42,27:32:70:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	183699682	rs112094045	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:31:51:0.549:2	./.	./.	./.
chr2	183703336	rs288326	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:30:7:0.571:2	0/1:24,30:31:54:0.556:2	./.	0/1:26,26:31:52:0.500:2	0/1:37,33:31:70:0.471:2	0/1:43,21:31:64:0.328:2	./.	./.	0/1:51,37:32:88:0.420:2
chr2	183731104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.
chr2	183799558	rs9288088	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,67:33:67:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:61,52:32:113:0.460:2	0/1:3,44:31:47:0.936:2	0/1:59,41:31:100:0.410:2	0/1:1,47:32:48:0.979:2	0/1:0,62:32:62:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,102:32:102:1.00:2
chr2	183806814	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,6:32:141:0.043:2	./.	./.	./.	./.
chr2	183806826	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,7:30:160:0.044:2	./.	./.	./.	./.
chr2	183806852	rs148488585	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:31:153:0.039:2	./.	./.	./.	./.
chr2	183826987	rs184228927	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.
chr2	183850877	rs41270217	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:51,34:30:85:0.400:2	./.	0/1:43,34:31:77:0.442:2	./.	./.	./.	./.	./.
chr2	183948210	rs16823717	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,27:29:70:0.386:2	./.	./.	./.	./.
chr2	185800905	rs12476147	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,36:30:37:0.973:2	./.	0/1:19,16:30:35:0.457:2	0/1:19,11:30:30:0.367:2	0/1:2,35:31:37:0.946:2	./.	0/1:42,17:32:59:0.288:2
chr2	185801365	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:30:88:0.068:2	./.
chr2	185801559	rs35676856	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,24:33:59:0.407:2	0/1:18,10:32:29:0.357:2	./.	./.	./.	0/1:35,28:31:63:0.444:2	./.	./.	./.	./.	0/1:42,35:32:77:0.455:2
chr2	185801597	rs61739290	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,27:29:76:0.355:2	0/1:20,14:27:34:0.412:2	./.	./.	./.	0/1:59,58:28:117:0.496:2	./.	./.	./.	./.	0/1:70,57:28:127:0.449:2
chr2	185801747	rs4667001	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:31:33:1.00:2	0/1:1,20:30:21:0.952:2	./.	0/1:11,8:30:19:0.421:2	0/1:16,12:31:28:0.429:2	0/1:0,35:32:35:1.00:2	./.	0/1:33,14:29:47:0.298:2
chr2	185801755	rs4667002	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,16:30:39:0.410:2	0/1:19,12:30:31:0.387:2	0/1:1,10:29:11:0.909:2	0/1:0,33:31:33:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,23:29:23:1.00:2	0/1:16,15:30:31:0.484:2	0/1:0,34:29:34:1.00:2	./.	0/1:0,45:30:46:1.00:2
chr2	185801756	rs61739288	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,16:32:38:0.421:2	0/1:18,12:32:30:0.400:2	./.	./.	./.	0/1:23,7:32:30:0.233:2	./.	./.	./.	./.	0/1:20,27:33:47:0.574:2
chr2	185801917	rs728534	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:33:28:0.607:2	0/1:16,25:31:41:0.610:2	./.	./.	./.	0/1:15,16:34:31:0.516:2	./.	./.
chr2	185802243	rs1366842	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:31:10:0.300:2	0/1:0,52:31:52:1.00:2	0/1:0,31:30:31:1.00:2	./.	0/1:25,23:31:48:0.479:2	0/1:35,27:32:62:0.435:2	0/1:0,57:32:57:1.00:2	./.	0/1:35,22:32:57:0.386:2
chr2	185802363	rs12477430	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,16:30:49:0.327:2	0/1:15,20:31:35:0.571:2	0/1:0,2:30:2:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,33:31:33:1.00:2	0/1:32,12:32:44:0.273:2	0/1:30,16:30:46:0.348:2	0/1:24,25:30:49:0.510:2	0/1:0,49:32:49:1.00:2	./.	0/1:0,58:30:58:1.00:2
chr2	185803126	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:32:75:0.493:2	./.	./.	./.	./.
chr2	185803364	rs3731834	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:30:16:0.563:2	0/1:32,41:33:73:0.562:2	0/1:49,57:32:106:0.538:2	./.	./.	0/1:54,61:32:115:0.530:2	./.	./.	./.
chr2	185803445	rs112183442	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:30:47:0.489:2	./.	./.	./.	./.	./.
chr2	186670104	rs7576532	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,89:32:89:1.00:2	0/1:2,66:31:68:0.971:2	0/1:0,78:32:78:1.00:2	0/1:1,85:32:87:0.988:2	0/1:0,91:32:91:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,129:32:129:1.00:2
chr2	186670780	rs16827154	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,10:32:31:0.323:2	0/1:6,6:31:12:0.500:2	./.	./.	0/1:1,18:30:19:0.947:2	0/1:0,33:30:33:1.00:2	0/1:11,7:32:18:0.389:2	0/1:14,4:31:18:0.222:2	0/1:18,10:32:28:0.357:2	./.	./.
chr2	186670979	rs4666689	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,75:32:76:0.987:2	0/1:2,57:32:59:0.966:2	0/1:2,89:32:91:0.978:2	0/1:0,74:32:74:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,126:33:126:1.00:2	./.	0/1:0,107:32:107:1.00:2
chr2	186671357	rs17826534	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,19:32:37:0.514:2	0/1:14,4:32:18:0.222:2	./.	./.	0/1:0,21:31:21:1.00:2	0/1:0,43:31:43:1.00:2	0/1:18,11:32:29:0.379:2	0/1:8,16:31:24:0.667:2	0/1:32,25:33:57:0.439:2	./.	./.
chr2	186671912	rs1862066	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,45:33:88:0.511:2	0/1:28,36:32:64:0.563:2	0/1:6,4:32:10:0.400:2	./.	0/1:1,50:31:51:0.980:2	0/1:0,66:31:66:1.00:2	0/1:46,33:32:79:0.418:2	0/1:62,39:32:101:0.386:2	0/1:55,51:32:106:0.481:2	./.	./.
chr2	186672527	rs72900086	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,27:30:68:0.397:2	0/1:17,13:32:30:0.433:2	./.	./.	0/1:0,62:31:62:1.00:2	0/1:22,34:31:56:0.607:2	0/1:32,21:31:53:0.396:2	./.	./.	./.	./.
chr2	186672897	rs4666690	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,60:33:124:0.484:2	0/1:43,43:32:86:0.500:2	0/1:11,6:33:17:0.353:2	0/1:0,136:33:136:1.00:2	./.	./.	0/1:41,52:33:93:0.559:2	0/1:63,64:33:127:0.504:2	0/1:63,77:34:140:0.550:2	./.	0/1:1,159:33:160:0.994:2
chr2	186678633	rs17826666	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,146:31:150:0.973:2	./.	./.	./.	./.	0/1:94,68:32:162:0.420:2	./.	0/1:87,95:32:182:0.522:2
chr2	186680189	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:29:94:0.053:2	./.	./.	./.	./.	./.
chr2	186697876	rs1468999	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,48:34:48:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,59:34:59:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,73:33:74:1.00:2
chr2	187370246	rs373154978	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:32:59:0.356:2	./.	./.	./.	./.
chr2	187371492	rs184966157	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:31:53:0.509:2	./.	./.	./.	./.
chr2	187465108	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.
chr2	187487160	rs9333288	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,27:31:27:1.00:2	0/1:9,6:30:15:0.400:2	0/1:3,60:30:63:0.952:2	0/1:0,34:29:34:1.00:2	0/1:27,21:30:48:0.438:2	0/1:26,19:31:45:0.422:2	0/1:0,45:31:45:1.00:2	0/1:31,34:32:65:0.523:2	./.	0/1:51,49:30:100:0.490:2
chr2	187498107	rs9333289	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,18:33:56:0.321:2	0/1:25,23:32:48:0.479:2	./.	./.	./.	./.	0/1:23,19:33:42:0.452:2	./.	0/1:60,33:33:93:0.355:2	0/1:1,60:33:61:0.984:2	0/1:60,50:32:110:0.455:2
chr2	187532417	rs2230616	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,119:31:119:1.00:2
chr2	187558960	rs2276562	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,19:29:19:1.00:2	./.	./.	0/1:8,4:27:12:0.333:2	0/1:4,12:29:16:0.750:2	./.	./.
chr2	187559047	rs144403657	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:47,9:32:56:0.161:2	./.	0/1:39,8:33:47:0.170:2	./.	./.
chr2	187626338	rs13026081	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:83,78:31:162:0.484:2	0/1:49,35:31:84:0.417:2	./.	./.	./.	./.	0/1:72,52:30:124:0.419:2	./.	0/1:87,70:31:157:0.446:2	0/1:0,129:31:129:1.00:2	0/1:95,80:31:175:0.457:2
chr2	187627337	rs17855087	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,22:32:59:0.373:2	./.	0/1:31,44:31:75:0.587:2	./.	./.	./.	./.	./.
chr2	187692908	rs17852916	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,64:30:137:0.467:2	./.	./.	0/1:41,31:29:72:0.431:2	0/1:93,64:29:157:0.408:2	./.	0/1:2,111:29:113:0.982:2	./.
chr2	187692939	rs202052356	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,12:21:135:0.090:2	./.	./.	0/1:137,12:16:149:0.081:2	./.	0/1:105,12:14:118:0.103:2	./.	./.	./.	0/1:94,20:17:114:0.175:2	0/1:121,23:13:144:0.160:2
chr2	187692941	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,9:18:128:0.071:2
chr2	187692983	rs17856918	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,69:30:141:0.489:2	./.	./.	0/1:42,37:30:79:0.468:2	0/1:94,58:30:152:0.382:2	./.	0/1:1,91:31:92:0.989:2	./.
chr2	187693003	rs10195632	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,63:30:125:0.504:2	./.	./.	0/1:38,32:30:70:0.457:2	0/1:86,47:30:133:0.353:2	./.	0/1:1,92:29:93:0.989:2	./.
chr2	187693044	rs17852915	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:30:83:0.470:2	./.	./.	0/1:31,21:30:52:0.404:2	0/1:55,24:30:79:0.304:2	./.	0/1:1,71:31:72:0.986:2	./.
chr2	187693104	rs10172225	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,23:30:64:0.359:2	./.	./.	0/1:25,11:29:36:0.306:2	0/1:34,16:29:50:0.320:2	./.	0/1:0,60:31:60:1.00:2	./.
chr2	187693155	rs10195758	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,11:32:32:0.344:2	./.	./.	0/1:7,5:32:12:0.417:2	0/1:17,6:31:23:0.261:2	./.	0/1:0,30:32:30:1.00:2	./.
chr2	187697883	rs10164815	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,92:32:194:0.474:2	./.	./.	0/1:69,47:33:116:0.405:2	0/1:95,72:33:167:0.431:2	./.	0/1:4,165:33:169:0.976:2	./.
chr2	187698707	rs6434197	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,25:29:43:0.581:2	./.	./.	0/1:35,23:30:58:0.397:2	0/1:20,51:30:72:0.718:2	./.	0/1:0,48:30:48:1.00:2	./.
chr2	187698751	rs7559533	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,13:32:27:0.481:2	0/1:8,7:33:15:0.467:2	./.	0/1:12,5:33:17:0.294:2	./.	0/1:0,39:32:39:1.00:2	./.	./.	./.	./.	0/1:31,26:33:57:0.456:2
chr2	187702055	rs149540467	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,46:31:139:0.331:2	./.	./.	./.
chr2	187709416	rs113850014	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr2	187713866	rs6725956	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,31:31:60:0.517:2	./.	./.	0/1:21,29:31:50:0.580:2	0/1:22,23:32:45:0.511:2	./.	0/1:0,28:31:28:1.00:2	./.
chr2	187713922	rs6726153	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:29:12:0.500:2	./.	./.	0/1:0,4:28:4:1.00:2	0/1:5,4:31:9:0.444:2	./.	0/1:0,6:29:6:1.00:2	./.
chr2	188211112	rs3771095	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:30:33:0.394:2	./.	./.	./.	./.	./.	0/1:0,32:31:32:1.00:2	./.
chr2	188250301	rs698577	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,9:31:9:1.00:2	0/1:1,85:30:86:0.988:2	0/1:0,53:30:53:1.00:2	0/1:0,76:30:77:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,141:31:141:1.00:2
chr2	188331711	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.
chr2	188343497	rs7586970	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:33:18:0.444:2	./.	./.	0/1:36,27:33:63:0.429:2	0/1:0,39:32:39:1.00:2	./.	0/1:55,46:33:101:0.455:2	./.	./.
chr2	189599497	rs72902678	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,79:32:174:0.454:2	./.	./.	./.
chr2	189849956	rs180938313	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,63:32:152:0.414:2	./.	./.	./.
chr2	189862048	rs7579815	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:33:60:0.400:2	./.	./.	./.	./.
chr2	189862097	rs7579903	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	./.	./.	./.	./.
chr2	189863389	rs13306272	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:31:30:1.00:2	./.	0/1:2,158:31:160:0.988:2	0/1:112,84:31:197:0.429:2	./.	0/1:117,81:31:198:0.409:2	./.	0/1:97,95:31:193:0.495:2	./.
chr2	189864080	rs1800255	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:29:10:0.900:2	./.	0/1:0,29:29:29:1.00:2	0/1:29,15:29:44:0.341:2	./.	0/1:27,26:29:53:0.491:2	./.	0/1:32,28:30:60:0.467:2	./.
chr2	189864582	rs1801184	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	0/1:80,60:32:140:0.429:2	./.	./.	./.	./.
chr2	189866199	rs2271682	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,63:32:63:1.00:2	0/1:48,28:31:76:0.368:2	0/1:0,95:32:95:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,99:31:99:1.00:2
chr2	189868535	rs28763878	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,14:31:44:0.318:2	./.
chr2	189871644	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,13:32:122:0.107:2	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	189875421	rs1516446	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,98:33:98:1.00:2	0/1:2,103:33:105:0.981:2	0/1:0,94:34:94:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,95:32:95:1.00:2
chr2	189898846	rs147420365	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,53:33:105:0.505:2
chr2	189898847	rs78905646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:31:102:0.471:2	./.	./.	./.	./.	./.
chr2	189904203	rs10208525	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:32,27:30:59:0.458:2	./.
chr2	189904233	rs10197596	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	0/1:21,18:30:39:0.462:2	./.
chr2	189907937	rs6434312	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,5:30:5:1.00:2	0/1:1,44:30:45:0.978:2	0/1:0,35:30:35:1.00:2	./.	0/1:0,40:29:40:1.00:2	0/1:30,21:29:52:0.412:2	0/1:0,45:30:45:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,52:29:52:1.00:2
chr2	189918622	rs116298748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,71:32:142:0.504:2	./.	./.	./.	./.	./.
chr2	189921776	rs73978812	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:32:100:0.500:2	./.	./.	./.	./.	./.
chr2	189931144	rs35852101	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,26:32:38:0.684:2	./.	./.	./.	./.	./.
chr2	189932764	rs35830636	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2	0/1:24,14:32:38:0.368:2	./.	./.	./.	./.	./.	0/1:51,39:30:90:0.433:2	0/1:36,36:32:72:0.500:2	./.	./.
chr2	189932831	rs2229495	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:31:52:0.981:2	0/1:0,40:30:40:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,71:31:72:1.00:2	0/1:0,53:30:53:1.00:2	0/1:1,63:30:64:0.984:2	0/1:1,63:30:64:0.984:2	0/1:35,26:31:61:0.426:2	0/1:0,61:31:61:1.00:2	0/1:0,31:30:31:1.00:2	0/1:1,76:30:77:0.987:2
chr2	189943304	rs73978832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,34:31:74:0.459:2	./.	./.	./.	./.	./.
chr2	189948696	rs56310996	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,22:30:22:1.00:2	./.	./.	./.	0/1:14,12:31:26:0.462:2	./.
chr2	189953508	rs58106884	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.	./.	0/1:2,125:31:129:0.984:2	./.	./.	./.	0/1:83,60:32:143:0.420:2	./.
chr2	189963501	rs148220961	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,7:33:16:0.438:2	./.	./.	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.
chr2	189964891	rs56380683	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	0/1:1,143:32:144:0.993:2	./.	./.	./.	0/1:65,40:33:105:0.381:2	./.
chr2	189974958	rs4128539	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,22:32:22:1.00:2	0/1:1,22:30:23:0.957:2	0/1:25,19:32:44:0.432:2	0/1:0,48:32:48:1.00:2	0/1:1,27:32:28:0.964:2	0/1:0,29:32:29:1.00:2
chr2	189975075	rs76511879	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,35:29:95:0.368:2	./.	./.	./.
chr2	190313570	rs28760459	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,59:30:189:0.312:2	./.	./.	./.	./.	./.
chr2	190314052	rs10196323	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:32:19:0.389:2	./.	./.	./.	./.	./.
chr2	190316625	rs13389403	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:29:25:0.320:2	./.	./.	./.	./.	./.
chr2	190320083	rs6737615	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,44:32:83:0.530:2	./.	./.	./.	./.	./.
chr2	190323530	rs1157910	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,135:28:138:0.978:2	0/1:0,78:28:78:1.00:2	./.	0/1:5,147:28:152:0.967:2	0/1:1,147:29:148:0.993:2	./.	0/1:86,79:28:165:0.479:2	0/1:103,95:28:198:0.480:2	0/1:3,163:29:167:0.982:2	./.	0/1:76,81:28:157:0.516:2
chr2	190329873	rs13429203	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,60:29:122:0.492:2	./.	./.	./.	./.	./.
chr2	190430177	rs2304704	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,78:32:80:0.987:2	0/1:0,50:32:50:1.00:2	0/1:5,6:33:11:0.545:2	0/1:1,89:32:90:0.989:2	0/1:0,60:32:60:1.00:2	0/1:61,42:32:103:0.408:2	./.	0/1:48,57:32:105:0.543:2	0/1:0,90:33:90:1.00:2	0/1:37,24:32:61:0.393:2	0/1:39,46:32:85:0.541:2
chr2	190445194	rs11568351	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,65:30:109:0.602:2	0/1:49,33:27:82:0.402:2	./.	0/1:36,32:30:68:0.471:2	./.
chr2	190531031	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.
chr2	190531426	rs1437880	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,67:33:67:1.00:2
chr2	190531615	rs3828267	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,22:32:45:0.489:2	./.	./.	0/1:17,25:32:42:0.595:2	0/1:35,25:32:60:0.417:2	./.	./.	./.
chr2	190531645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,6:31:89:0.067:2
chr2	190561060	rs113995284	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,34:31:113:0.304:2	./.	./.	./.	./.	./.
chr2	190571776	rs16831887	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:31:66:0.470:2	./.
chr2	190595258	rs1225090	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,80:32:81:1.00:2
chr2	190602513	rs1225099	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,26:27:26:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,53:27:53:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,76:28:76:1.00:2
chr2	190606152	rs143926631	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:34:79:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr2	190617643	rs2243876	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:30:140:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,159:31:159:1.00:2	0/1:1,163:30:165:0.994:2	0/1:1,172:30:173:0.994:2	0/1:0,158:30:158:1.00:2	0/1:1,160:30:161:0.994:2	0/1:0,163:30:163:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,172:30:172:1.00:2
chr2	190617700	rs16831960	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:28:88:0.466:2	./.	./.	./.	0/1:47,28:28:75:0.373:2	./.
chr2	190620216	rs75321854	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,38:31:86:0.442:2	./.
chr2	190708712	rs2066459	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	./.	./.	./.	./.
chr2	190719607	rs151325573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,19:30:25:0.760:2	./.	./.	./.	./.	./.
chr2	190722170	rs735558	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,115:31:115:1.00:2	./.	./.	./.	./.	./.
chr2	190925077	rs1805086	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:33:60:0.450:2	./.	./.
chr2	191064753	rs6753459	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,32:31:78:0.410:2	0/1:40,21:32:61:0.344:2	./.	0/1:66,46:31:112:0.411:2	0/1:63,29:30:92:0.315:2	./.	./.	0/1:67,48:30:115:0.417:2	./.	./.	./.
chr2	191065595	rs2271270	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,20:32:33:0.606:2	0/1:12,10:32:22:0.455:2	./.	0/1:10,9:32:19:0.474:2	0/1:7,6:32:13:0.462:2	./.	./.	0/1:8,16:31:24:0.667:2	./.	./.	./.
chr2	191066683	rs4853685	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,48:32:103:0.466:2	0/1:24,24:32:48:0.500:2	./.	0/1:78,52:32:130:0.400:2	0/1:42,37:31:79:0.468:2	./.	./.	0/1:93,49:31:142:0.345:2	./.	./.	./.
chr2	191066769	rs4853686	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,78:31:78:1.00:2	0/1:1,52:30:53:0.981:2	0/1:0,96:31:96:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,120:31:120:1.00:2
chr2	191066913	rs3749015	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,41:33:80:0.513:2	0/1:29,6:32:35:0.171:2	./.	0/1:26,26:33:52:0.500:2	0/1:29,24:31:53:0.453:2	./.	./.	0/1:45,32:33:77:0.416:2	./.	./.	./.
chr2	191066970	rs3749016	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,52:32:111:0.468:2	0/1:44,14:31:58:0.241:2	./.	0/1:47,45:32:92:0.489:2	0/1:42,32:30:74:0.432:2	./.	./.	0/1:69,52:31:121:0.430:2	./.	./.	./.
chr2	191067233	rs55815425	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,38:31:87:0.437:2	0/1:34,29:32:64:0.460:2	./.	0/1:73,33:33:106:0.311:2	0/1:38,37:32:75:0.493:2	./.	./.	0/1:82,52:32:134:0.388:2	./.	./.	./.
chr2	191067824	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,4:34:171:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr2	191068061	rs11216	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,54:32:99:0.545:2	0/1:25,30:32:55:0.545:2	./.	0/1:79,52:32:131:0.397:2	0/1:71,36:32:107:0.336:2	./.	./.	0/1:68,48:32:116:0.414:2	./.	./.	./.
chr2	191125911	rs74832989	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	0/1:10,11:31:21:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	191161622	rs1058180	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,90:30:178:0.506:2	0/1:74,48:29:122:0.393:2	0/1:0,24:31:24:1.00:2	0/1:110,72:30:182:0.396:2	0/1:87,55:30:142:0.387:2	0/1:2,176:30:178:0.989:2	0/1:1,156:30:157:0.994:2	0/1:118,67:30:185:0.362:2	0/1:0,181:31:181:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,184:30:185:1.00:2
chr2	191184475	rs291466	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,67:29:131:0.511:2	0/1:39,36:29:75:0.480:2	0/1:0,13:27:13:1.00:2	0/1:86,87:29:173:0.503:2	0/1:95,86:30:181:0.475:2	0/1:0,167:29:167:1.00:2	0/1:4,150:30:155:0.974:2	0/1:89,87:29:176:0.494:2	0/1:95,71:29:166:0.428:2	0/1:0,152:30:152:1.00:2	0/1:1,145:30:146:0.993:2
chr2	191208795	rs760307	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	0/1:0,3:22:3:1.00:2	./.	./.	./.
chr2	191224981	rs4656	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,14:33:34:0.412:2	0/1:12,11:32:23:0.478:2	./.	0/1:25,20:32:45:0.444:2	./.	./.	0/1:18,13:32:31:0.419:2	0/1:22,22:33:44:0.500:2	./.	./.	0/1:26,21:32:47:0.447:2
chr2	191227433	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,54:32:114:0.474:2
chr2	191231458	rs11544940	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,27:32:74:0.365:2	0/1:35,18:33:53:0.340:2	0/1:5,3:28:8:0.375:2	0/1:41,35:32:76:0.461:2	./.	0/1:48,34:32:82:0.415:2	0/1:0,60:32:60:1.00:2	0/1:39,30:32:69:0.435:2	0/1:50,61:33:111:0.550:2	./.	0/1:41,34:32:75:0.453:2
chr2	191231503	rs10931450	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,32:31:71:0.451:2	0/1:39,21:31:60:0.350:2	./.	0/1:48,41:30:89:0.461:2	./.	./.	./.	0/1:61,41:30:103:0.402:2	./.	./.	./.
chr2	191235610	rs7592352	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:32:61:0.541:2	./.	./.	./.	./.
chr2	191235901	rs1882891	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,11:31:31:0.355:2	0/1:16,11:29:27:0.407:2	0/1:0,6:32:6:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,50:30:50:1.00:2	0/1:18,11:30:29:0.379:2	0/1:0,28:31:28:1.00:2	0/1:0,37:31:37:1.00:2
chr2	191301368	rs9646748	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,44:32:79:0.557:2	0/1:2,52:32:54:0.963:2	./.	0/1:3,54:32:57:0.947:2	./.	0/1:0,62:33:62:1.00:2	./.	0/1:0,87:32:87:1.00:2
chr2	191354530	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:27:123:0.041:2	./.
chr2	191379268	rs4586658	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,16:32:31:0.516:2	0/1:1,167:32:168:0.994:2	0/1:99,73:32:173:0.424:2	0/1:90,65:32:155:0.419:2	0/1:4,155:32:159:0.975:2	0/1:89,73:32:162:0.451:2	0/1:89,88:33:177:0.497:2	0/1:80,85:32:165:0.515:2	0/1:73,76:32:149:0.510:2
chr2	191383495	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,8:16:82:0.098:2
chr2	191383544	rs187554649	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	./.	./.
chr2	191850391	rs191364028	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,31:33:52:0.596:2	0/1:17,15:33:32:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	191874667	rs2066802	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,28:32:77:0.364:2	0/1:60,76:32:136:0.559:2	./.	./.	./.	0/1:39,43:33:82:0.524:2	./.
chr2	191900999	rs77509921	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,7:15:40:0.175:2	./.	./.	./.	./.	./.	./.	./.
chr2	191922841	rs3024866	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,29:33:61:0.475:2	0/1:16,19:32:35:0.543:2	./.	0/1:37,17:32:54:0.315:2	0/1:0,38:31:38:1.00:2	0/1:1,59:31:60:0.983:2	0/1:25,28:32:53:0.528:2	0/1:33,31:32:64:0.484:2	./.	0/1:1,66:32:67:0.985:2	0/1:41,43:32:84:0.512:2
chr2	192160839	rs17854823	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,64:33:154:0.416:2	0/1:36,56:32:92:0.609:2	0/1:75,78:32:153:0.510:2	0/1:0,85:32:85:1.00:2	./.	0/1:79,85:33:164:0.518:2	0/1:65,56:32:121:0.463:2	0/1:102,87:32:189:0.460:2
chr2	192160875	rs4853575	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,34:32:103:0.330:2	0/1:26,39:32:65:0.600:2	0/1:59,55:31:114:0.482:2	0/1:0,56:32:56:1.00:2	./.	0/1:51,64:33:115:0.557:2	0/1:49,39:32:88:0.443:2	0/1:86,76:32:162:0.469:2
chr2	192214966	rs59642822	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,27:33:27:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:5,10:32:15:0.667:2	0/1:20,6:33:26:0.231:2	./.	0/1:24,10:33:34:0.294:2	0/1:21,8:33:29:0.276:2	./.	0/1:28,16:33:44:0.364:2
chr2	192250726	rs13018796	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:32:167:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,186:31:186:1.00:2	0/1:1,188:31:189:0.995:2	0/1:0,186:31:186:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,180:31:180:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,182:31:182:1.00:2
chr2	192257891	rs148788532	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:31:97:0.402:2	./.	./.	./.
chr2	192279327	rs2271767	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,39:32:40:0.975:2	0/1:0,47:33:47:1.00:2	0/1:43,28:33:71:0.394:2	0/1:0,43:33:43:1.00:2	0/1:1,50:32:51:0.980:2	0/1:0,74:32:74:1.00:2
chr2	192283494	rs143293753	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:30:14:0.286:2	./.	./.	./.	./.	./.	0/1:3,6:29:9:0.667:2	./.
chr2	192701393	rs10167187	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,35:31:35:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:0,41:30:41:1.00:2	0/1:30,25:30:55:0.455:2	0/1:31,29:31:60:0.483:2	0/1:39,20:31:59:0.339:2	0/1:0,77:32:77:1.00:2	0/1:21,24:31:45:0.533:2	0/1:39,34:31:73:0.466:2
chr2	192701407	rs61735649	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,13:33:43:0.302:2	./.	./.	./.
chr2	192711442	rs61735648	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,86:32:194:0.443:2	./.	./.	./.	./.
chr2	193044347	rs55693184	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,45:31:101:0.446:2	./.	./.	./.	./.	./.
chr2	196605581	rs187206738	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:29:31:0.516:2	./.	./.	./.	./.
chr2	196673533	rs13411834	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,65:32:65:1.00:2	0/1:1,76:33:77:0.987:2
chr2	196720705	rs16841018	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,29:33:29:1.00:2	./.	./.	0/1:12,7:30:19:0.368:2	./.
chr2	196729450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.
chr2	196746551	rs371684985	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:34:180:0.022:2	./.	./.	./.	./.	./.
chr2	196749504	rs60214909	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,27:32:28:0.964:2	./.	./.	0/1:16,14:32:30:0.467:2	./.
chr2	196762426	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,22:31:56:0.393:2	0/1:35,18:32:53:0.340:2	./.	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.	./.	./.	./.
chr2	196791276	rs1489802	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,26:33:27:0.963:2	0/1:0,24:32:24:1.00:2	0/1:0,6:32:6:1.00:2	0/1:2,56:32:58:0.966:2	0/1:2,27:32:29:0.931:2	0/1:24,19:32:43:0.442:2	./.	0/1:0,34:32:34:1.00:2	0/1:2,41:33:43:0.953:2	0/1:16,20:33:36:0.556:2	0/1:47,34:32:81:0.420:2
chr2	196822004	rs62623378	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,111:32:199:0.558:2	./.	./.	./.	./.	0/1:107,77:33:184:0.418:2
chr2	196825256	rs115124743	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:31:77:0.442:2	./.	./.	./.	./.	0/1:49,47:32:96:0.490:2
chr2	196825402	rs6719500	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,122:33:124:0.984:2	./.	./.	0/1:45,43:33:88:0.489:2	./.
chr2	196851911	rs10931715	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,35:31:35:1.00:2	0/1:30,20:31:50:0.400:2	./.	0/1:1,54:31:55:0.982:2	0/1:4,76:33:80:0.950:2	0/1:30,20:32:50:0.400:2	0/1:51,46:32:97:0.474:2
chr2	196866420	rs6434811	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:1,29:32:30:0.967:2	0/1:0,10:32:10:1.00:2	0/1:0,97:32:97:1.00:2	0/1:2,74:32:76:0.974:2	0/1:2,68:32:70:0.971:2	0/1:0,58:32:58:1.00:2	0/1:2,90:32:92:0.978:2	0/1:0,94:34:94:1.00:2	0/1:1,86:33:88:0.989:2	0/1:0,89:33:89:1.00:2
chr2	196889180	rs186738601	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	196892695	rs62203391	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,50:33:88:0.568:2	0/1:13,23:32:36:0.639:2	0/1:6,9:33:15:0.600:2	./.	0/1:0,43:31:43:1.00:2	./.	./.	./.	./.	./.	./.
chr2	196915991	rs10174065	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,36:33:36:1.00:2	0/1:1,27:32:28:0.964:2	0/1:20,19:32:39:0.487:2	./.	0/1:0,43:32:43:1.00:2	0/1:1,57:33:58:0.983:2	0/1:25,12:32:37:0.324:2	0/1:32,36:32:68:0.529:2
chr2	197004439	rs1054537	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,104:33:104:1.00:2	0/1:1,73:32:74:0.986:2	0/1:63,39:32:102:0.382:2	./.	0/1:1,112:32:113:0.991:2	0/1:1,133:33:134:0.993:2	0/1:45,27:33:72:0.375:2	0/1:70,84:33:154:0.545:2
chr2	197021276	rs10931726	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:32:55:0.982:2	0/1:1,41:32:43:0.976:2	0/1:0,4:32:4:1.00:2	0/1:0,66:33:66:1.00:2	0/1:2,40:31:42:0.952:2	0/1:47,29:32:76:0.382:2	./.	0/1:2,70:31:72:0.972:2	0/1:1,72:33:73:0.986:2	0/1:31,36:32:67:0.537:2	0/1:72,49:31:121:0.405:2
chr2	197021372	rs12478353	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:30:23:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:1,29:28:30:0.967:2	0/1:0,11:28:11:1.00:2	0/1:22,10:28:32:0.313:2	./.	0/1:0,25:29:25:1.00:2	0/1:0,36:30:36:1.00:2	0/1:14,10:29:24:0.417:2	0/1:17,30:30:47:0.638:2
chr2	197080642	rs17310196	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,17:32:40:0.425:2	./.	./.	./.	./.	0/1:29,15:32:44:0.341:2	./.	./.
chr2	197118729	rs4850690	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,88:33:88:1.00:2
chr2	197172742	rs61752161	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,54:31:96:0.563:2	./.	./.	0/1:39,34:31:73:0.466:2
chr2	197183856	rs61744819	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,43:28:95:0.453:2	./.	./.	./.	./.	./.
chr2	197184321	rs1531111	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,100:32:100:1.00:2	0/1:64,91:32:155:0.587:2	0/1:2,126:33:128:0.984:2	0/1:1,125:32:126:0.992:2	0/1:0,139:32:139:1.00:2
chr2	197504545	rs1879128	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,44:31:44:1.00:2	0/1:6,7:33:13:0.538:2	0/1:49,51:31:100:0.510:2	0/1:40,37:32:77:0.481:2	./.	0/1:38,17:32:55:0.309:2	0/1:51,31:31:82:0.378:2	0/1:30,53:33:84:0.639:2	0/1:27,24:32:51:0.471:2	./.
chr2	197531465	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:171:0.024:2	./.
chr2	197541296	rs17271281	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:31:18:0.444:2	0/1:113,77:31:190:0.405:2	0/1:113,75:31:188:0.399:2	0/1:92,85:31:177:0.480:2	0/1:135,59:32:194:0.304:2	./.	0/1:123,71:32:194:0.366:2	0/1:118,67:32:185:0.362:2	0/1:0,179:32:179:1.00:2
chr2	197577448	rs80183667	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,101:29:177:0.574:2
chr2	197629320	rs61741430	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,40:32:72:0.556:2
chr2	197654052	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.	./.	./.
chr2	197737259	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.
chr2	197863698	rs17385301	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:31:36:0.528:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	197866470	rs12478175	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,18:32:18:1.00:2	0/1:1,6:32:7:0.857:2	0/1:1,44:31:45:0.978:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,16:30:16:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,28:33:28:1.00:2	0/1:22,9:33:31:0.290:2	0/1:0,43:33:43:1.00:2
chr2	197872574	rs61752170	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,46:32:119:0.387:2
chr2	197890001	rs62185248	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,21:30:61:0.344:2	./.	0/1:36,27:31:63:0.429:2	0/1:47,43:31:90:0.478:2	./.	./.	./.
chr2	197986072	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:31:191:0.031:2	./.	./.	./.	./.
chr2	197990741	rs35338671	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,53:32:145:0.366:2	./.	./.	0/1:45,61:33:106:0.575:2	./.
chr2	198001319	rs3731569	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,12:29:22:0.545:2	./.	0/1:28,20:29:48:0.417:2	./.	0/1:38,14:30:52:0.269:2	0/1:23,24:30:47:0.511:2	./.
chr2	198175297	rs10931780	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,3:24:7:0.429:2	0/1:1,2:32:3:0.667:2	0/1:0,5:31:5:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,11:32:11:1.00:2	0/1:3,17:31:20:0.850:2	./.	0/1:1,6:33:7:0.857:2	./.	./.
chr2	198257036	rs150226353	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,3:34:57:0.053:2	./.	./.	./.	./.	./.	./.
chr2	198257159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.
chr2	198257795	rs4685	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,95:32:190:0.500:2	0/1:64,53:32:117:0.453:2	./.	0/1:82,108:33:190:0.568:2	0/1:3,184:31:187:0.984:2	0/1:5,184:32:189:0.974:2	0/1:4,187:32:191:0.979:2	0/1:2,184:32:186:0.989:2	0/1:87,95:33:182:0.522:2	0/1:0,184:32:184:1.00:2	0/1:0,184:32:186:1.00:2
chr2	198265486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.
chr2	198265526	rs788018	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,48:33:96:0.500:2	0/1:30,26:32:56:0.464:2	./.	0/1:62,37:33:100:0.374:2	0/1:2,71:33:74:0.973:2	0/1:0,105:33:105:1.00:2	0/1:1,65:33:67:0.985:2	0/1:3,98:32:101:0.970:2	0/1:54,56:34:111:0.509:2	0/1:0,61:32:61:1.00:2	0/1:1,125:32:126:0.992:2
chr2	198283305	rs788023	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,50:30:115:0.435:2	0/1:31,31:33:62:0.500:2	./.	0/1:49,57:32:106:0.538:2	0/1:0,114:32:114:1.00:2	0/1:1,105:32:106:0.991:2	0/1:0,114:32:114:1.00:2	0/1:1,102:32:103:0.990:2	0/1:56,46:33:102:0.451:2	0/1:0,112:32:112:1.00:2	0/1:0,113:32:113:1.00:2
chr2	198283616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.
chr2	198327314	rs3754822	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,19:33:54:0.352:2	0/1:16,18:32:34:0.529:2	./.	./.	0/1:27,20:31:47:0.426:2	0/1:32,31:31:63:0.492:2	0/1:36,19:32:55:0.345:2	./.	./.	./.	0/1:66,47:32:113:0.416:2
chr2	198338579	rs61745365	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,20:32:58:0.345:2	./.	./.	./.	./.	./.	./.
chr2	198338598	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:29:70:0.057:2	./.	./.	./.	./.
chr2	198351906	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:34:59:0.068:2	./.	./.
chr2	198353093	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:27:193:0.031:2	./.	./.	./.	./.	./.
chr2	198353095	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:31:195:0.031:2	./.	./.	./.	./.	./.
chr2	198353099	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	0/1:181,5:33:186:0.027:2	./.	./.	./.	./.
chr2	198358157	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.
chr2	198362018	rs8539	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,31:33:74:0.419:2	0/1:31,14:32:45:0.311:2	./.	0/1:47,37:32:84:0.440:2	0/1:0,44:32:44:1.00:2	0/1:0,75:32:75:1.00:2	0/1:3,62:32:65:0.954:2	0/1:1,66:32:67:0.985:2	0/1:53,44:33:97:0.454:2	0/1:1,67:32:68:0.985:2	0/1:2,106:33:108:0.981:2
chr2	198362090	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2
chr2	198363406	rs200514123	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,4:33:115:0.035:2	./.	./.	0/1:117,7:33:124:0.056:2	0/1:71,4:32:75:0.053:2	0/1:107,4:30:111:0.036:2	0/1:93,6:33:99:0.061:2	0/1:129,6:32:135:0.044:2	0/1:124,5:32:129:0.039:2	0/1:134,4:33:138:0.029:2	./.
chr2	198363501	rs201599915	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,6:30:197:0.030:2	0/1:156,8:33:165:0.049:2	0/1:186,9:31:195:0.046:2	0/1:187,8:30:195:0.041:2	0/1:186,9:30:195:0.046:2	0/1:177,9:32:186:0.048:2	0/1:177,7:32:185:0.038:2	./.
chr2	198363504	rs1050347	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:79,73:32:152:0.480:2	0/1:50,51:32:101:0.505:2	./.	./.	0/1:114,57:31:171:0.333:2	0/1:122,68:32:190:0.358:2	0/1:109,84:32:193:0.435:2	./.	./.	./.	0/1:89,90:32:179:0.503:2
chr2	198400311	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.	./.	./.
chr2	198400329	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.	./.
chr2	198405150	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,5:33:102:0.049:2	./.	./.	./.	./.	./.
chr2	198508951	rs10497806	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:102,84:32:186:0.452:2	0/1:69,60:32:129:0.465:2	./.	0/1:102,87:31:189:0.460:2	0/1:3,152:31:155:0.981:2	0/1:88,100:30:188:0.532:2	0/1:6,181:32:187:0.968:2	0/1:111,82:32:193:0.425:2	0/1:86,95:33:181:0.525:2	0/1:0,184:32:184:1.00:2	0/1:3,168:32:171:0.982:2
chr2	198572461	rs7592344	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,43:30:83:0.518:2	0/1:27,26:32:53:0.491:2	0/1:44,33:31:77:0.429:2	./.	./.	0/1:47,50:31:97:0.515:2
chr2	198948960	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,10:32:136:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr2	198949344	rs113185553	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,49:28:94:0.521:2	./.	./.	./.	./.	./.	0/1:49,51:28:100:0.510:2
chr2	198950029	rs2228135	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:33:45:0.545:2	0/1:17,5:33:22:0.227:2	0/1:28,20:32:48:0.417:2	./.	./.	0/1:35,23:33:58:0.397:2
chr2	198950240	rs1064213	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,29:31:56:0.518:2	0/1:13,20:32:33:0.606:2	./.	0/1:26,25:31:51:0.490:2	0/1:0,38:29:38:1.00:2	./.	0/1:11,17:30:28:0.607:2	0/1:31,14:30:45:0.311:2	0/1:27,32:31:59:0.542:2	0/1:0,33:30:33:1.00:2	0/1:34,19:32:53:0.358:2
chr2	198950516	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.
chr2	200193432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,3:33:62:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr2	200213684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2
chr2	200776353	rs62178345	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:32:9:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,13:30:13:1.00:2	./.	./.	./.	./.	0/1:9,4:33:13:0.308:2	0/1:2,2:35:4:0.500:2
chr2	200790356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.
chr2	200813044	rs191659363	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,22:32:47:0.468:2	0/1:24,7:32:31:0.226:2	./.	./.	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	./.
chr2	201171060	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,3:36:104:0.029:2	./.	./.	./.	./.	./.	./.
chr2	201171129	rs74340199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,37:32:103:0.359:2	./.	./.
chr2	201171191	rs10931898	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,33:30:68:0.485:2	0/1:25,21:31:46:0.457:2	./.	0/1:0,107:32:107:1.00:2	0/1:66,41:32:107:0.383:2	./.	0/1:77,46:32:123:0.374:2	0/1:57,47:33:104:0.452:2	0/1:0,80:33:80:1.00:2	0/1:46,31:31:77:0.403:2	0/1:61,27:32:88:0.307:2
chr2	201171207	rs12614621	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,33:31:71:0.465:2	0/1:28,23:33:51:0.451:2	./.	0/1:0,113:32:113:1.00:2	0/1:71,53:32:124:0.427:2	./.	0/1:86,49:32:137:0.363:2	0/1:56,50:32:106:0.472:2	0/1:0,93:33:93:1.00:2	0/1:51,37:32:88:0.420:2	0/1:58,29:33:87:0.333:2
chr2	201253956	rs842823	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:28:14:0.500:2	./.	./.	0/1:1,69:29:70:0.986:2	./.	./.	./.	./.	./.
chr2	201337667	rs6723687	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,30:34:86:0.349:2	./.	./.
chr2	201354935	rs3795969	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	0/1:42,42:32:84:0.500:2	./.	./.	0/1:33,47:33:80:0.588:2	0/1:0,60:31:60:1.00:2	0/1:24,27:31:51:0.529:2
chr2	201355106	rs13018579	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:30:57:0.526:2	0/1:1,94:30:96:0.989:2	./.	./.	0/1:28,33:29:61:0.541:2
chr2	201397724	rs1036533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,45:32:118:0.381:2	./.	./.
chr2	201434573	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,5:27:108:0.046:2	./.	./.	./.
chr2	201436555	rs17448235	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,73:32:73:1.00:2	./.	./.	./.	./.	./.
chr2	201437048	rs17532665	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,65:32:66:0.985:2	./.	./.	./.	./.	./.
chr2	201437214	rs17532679	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,35:33:50:0.700:2	0/1:13,24:32:37:0.649:2	0/1:6,7:32:13:0.538:2	0/1:21,49:31:70:0.700:2	./.	./.	0/1:27,34:32:61:0.557:2	./.	./.	./.	0/1:2,76:32:78:0.974:2
chr2	201437328	rs35987478	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,11:32:27:0.407:2	0/1:14,9:31:23:0.391:2	./.	0/1:26,5:31:31:0.161:2	0/1:28,11:29:39:0.282:2	./.	0/1:13,14:31:27:0.519:2	./.	./.	0/1:18,7:31:25:0.280:2	./.
chr2	201437334	rs12052989	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,29:30:30:0.967:2	0/1:0,24:30:24:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,31:30:31:1.00:2	0/1:27,13:29:40:0.325:2	0/1:0,40:30:40:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:32,20:31:52:0.385:2	0/1:0,25:31:25:1.00:2	0/1:0,66:31:66:1.00:2
chr2	201450887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2
chr2	201468732	rs2293525	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.	./.	0/1:23,15:34:38:0.395:2	0/1:23,12:32:35:0.343:2	./.
chr2	201485441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.
chr2	201507439	rs56199635	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:34:80:0.050:2	./.
chr2	201526330	rs55754655	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,43:33:74:0.581:2	0/1:24,22:32:46:0.478:2	0/1:6,11:33:17:0.647:2	./.	./.	./.	0/1:85,36:33:121:0.298:2	0/1:76,52:33:128:0.406:2	./.	./.	0/1:66,66:33:132:0.500:2
chr2	201526368	rs41270243	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,34:33:68:0.500:2	0/1:31,13:32:44:0.295:2	0/1:3,11:32:14:0.786:2	./.	./.	./.	0/1:73,35:32:108:0.324:2	0/1:57,37:32:94:0.394:2	./.	./.	0/1:66,50:32:116:0.431:2
chr2	201534389	rs3731722	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,67:30:120:0.558:2
chr2	201541621	rs11678615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,80:31:181:0.442:2
chr2	201680418	rs200597625	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.
chr2	201682696	rs118194562	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	201683017	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.
chr2	201686936	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	0/1:36,3:33:39:0.077:2	./.	./.	./.	./.	./.	0/1:70,4:34:74:0.054:2	./.	./.	./.
chr2	201722827	rs17383109	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,46:32:125:0.368:2	./.	./.
chr2	201724410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.
chr2	201736166	rs7562391	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:71,56:33:128:0.441:2	0/1:52,42:32:94:0.447:2	./.	./.	./.	./.	./.	0/1:95,73:32:168:0.435:2	./.	./.	0/1:73,86:33:159:0.541:2
chr2	201768238	rs7917	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:97,64:33:161:0.398:2	0/1:63,49:32:112:0.438:2	0/1:1,29:31:30:0.967:2	./.	0/1:105,72:31:177:0.407:2	./.	./.	0/1:112,87:31:199:0.437:2	0/1:110,86:32:196:0.439:2	./.	0/1:116,81:32:197:0.411:2
chr2	201785731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.
chr2	201785837	rs2307362	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,17:31:35:0.486:2	0/1:14,7:31:21:0.333:2	0/1:2,5:29:7:0.714:2	./.	0/1:22,16:31:38:0.421:2	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	0/1:15,16:32:31:0.516:2
chr2	201806005	rs2307359	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:33:62:0.452:2	./.	./.
chr2	201846502	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:33:77:0.494:2	./.	./.
chr2	202005070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr2	202006096	rs10190751	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,37:31:89:0.416:2	0/1:41,27:32:68:0.397:2	0/1:0,9:31:9:1.00:2	./.	0/1:45,23:30:68:0.338:2	./.	./.	0/1:74,51:32:125:0.408:2	0/1:72,46:33:118:0.390:2	./.	0/1:89,54:32:143:0.378:2
chr2	202025621	rs1594	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,21:30:54:0.389:2	0/1:16,15:30:31:0.484:2	0/1:0,13:30:13:1.00:2	0/1:49,35:30:84:0.417:2	0/1:53,42:30:95:0.442:2	0/1:36,27:31:63:0.429:2	0/1:66,44:29:110:0.400:2	0/1:2,105:30:107:0.981:2	0/1:0,50:31:50:1.00:2	./.	0/1:1,63:30:64:0.984:2
chr2	202050677	rs3900115	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,25:30:45:0.556:2	0/1:21,20:29:41:0.488:2	0/1:0,6:30:6:1.00:2	0/1:35,31:30:66:0.470:2	0/1:27,21:29:48:0.438:2	0/1:20,26:29:46:0.565:2	0/1:29,24:30:54:0.453:2	0/1:3,58:29:61:0.951:2	0/1:0,50:31:50:1.00:2	./.	0/1:2,74:30:76:0.974:2
chr2	202068433	rs17860401	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	0/1:71,56:33:128:0.441:2	./.	./.
chr2	202068480	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:34:104:0.038:2	./.
chr2	202074207	rs17860405	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:33:86:0.523:2
chr2	202082459	rs13006529	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,46:32:98:0.469:2	0/1:31,28:31:59:0.475:2	0/1:5,3:30:8:0.375:2	0/1:51,43:32:94:0.457:2	0/1:37,32:31:70:0.464:2	0/1:56,63:31:119:0.529:2	0/1:33,30:31:63:0.476:2	0/1:1,101:31:102:0.990:2	0/1:75,66:32:141:0.468:2	./.	0/1:0,128:32:128:1.00:2
chr2	202122995	rs3769823	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,47:32:47:1.00:2	0/1:1,9:34:10:0.900:2	0/1:28,28:33:56:0.500:2	0/1:0,39:31:39:1.00:2	0/1:47,31:31:78:0.397:2	0/1:0,35:32:35:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,79:32:79:1.00:2
chr2	202149589	rs1045485	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,54:31:84:0.643:2	0/1:71,49:32:120:0.408:2
chr2	202149696	rs1045487	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:33:63:0.492:2	./.
chr2	202154200	rs17468277	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,81:33:162:0.500:2	0/1:119,80:32:199:0.402:2
chr2	202212950	rs116547819	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:17,3:32:20:0.150:2	0/1:13,4:32:17:0.235:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	202215492	rs13014235	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:25,15:33:40:0.375:2	0/1:0,16:33:16:1.00:2	0/1:16,12:32:28:0.429:2	0/1:0,12:33:12:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,45:33:45:1.00:2	0/1:25,23:33:48:0.479:2	0/1:0,42:33:42:1.00:2
chr2	202245423	rs34594680	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	0/1:41,38:31:79:0.481:2	./.	./.	./.
chr2	202252539	rs2244438	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,63:29:129:0.488:2	./.	0/1:99,53:30:153:0.349:2	./.	./.	./.	0/1:74,48:30:122:0.393:2	./.
chr2	202260049	rs2256584	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,121:31:121:1.00:2
chr2	202264098	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:23:26:0.154:2	./.	./.	./.	./.
chr2	202264156	rs13022344	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:30:60:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,5:30:5:1.00:2	0/1:52,30:30:82:0.366:2	0/1:2,67:30:69:0.971:2	0/1:44,39:30:83:0.470:2	0/1:0,76:30:76:1.00:2	0/1:4,68:30:72:0.944:2	0/1:0,82:31:82:1.00:2	./.	0/1:1,72:31:73:0.986:2
chr2	202265826	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.
chr2	202334704	rs192324264	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr2	202337730	rs1019299	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,183:30:186:0.984:2	0/1:2,139:29:141:0.986:2	0/1:19,14:29:33:0.424:2	0/1:102,81:30:183:0.443:2	0/1:0,181:30:181:1.00:2	0/1:98,86:30:184:0.467:2	0/1:0,172:30:172:1.00:2	0/1:0,172:30:172:1.00:2	0/1:80,109:31:189:0.577:2	0/1:86,97:31:183:0.530:2	0/1:2,153:30:155:0.987:2
chr2	202340410	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.
chr2	202340421	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.
chr2	202340443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.
chr2	202342402	rs12990557	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,155:32:183:0.847:2	0/1:11,104:32:115:0.904:2	0/1:19,7:31:26:0.269:2	0/1:114,65:31:179:0.363:2	0/1:131,58:31:189:0.307:2	0/1:109,86:31:195:0.441:2	0/1:31,159:31:190:0.837:2	0/1:133,53:32:186:0.285:2	0/1:108,79:32:187:0.422:2	./.	0/1:17,168:32:185:0.908:2
chr2	202342456	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:158,14:33:172:0.081:2	./.	./.	./.	0/1:171,9:33:180:0.050:2	0/1:177,7:33:184:0.038:2	./.	./.	./.	./.	./.
chr2	202343106	rs143801737	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,6:31:135:0.044:2	./.	./.	./.	./.	./.
chr2	202343153	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:30:186:0.032:2	./.	./.	./.	./.	./.
chr2	202343187	rs200083822	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,20:32:187:0.107:2	0/1:157,15:30:172:0.087:2	./.	./.	./.	0/1:187,13:31:200:0.065:2	0/1:161,37:31:198:0.187:2	0/1:170,27:32:197:0.137:2	0/1:182,15:30:197:0.076:2	0/1:169,24:32:193:0.124:2	./.
chr2	202352363	rs34138250	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:33:38:0.395:2	./.
chr2	202410300	rs10804117	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,50:31:52:0.962:2	0/1:0,32:31:32:1.00:2	./.	./.	0/1:46,27:30:73:0.370:2	./.	0/1:0,40:31:40:1.00:2	0/1:44,32:31:76:0.421:2	0/1:55,31:32:86:0.360:2	./.	0/1:64,47:31:111:0.423:2
chr2	202430584	rs73991652	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:31:42:0.429:2	./.	./.	./.
chr2	202436684	rs55872838	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:33:81:0.407:2	./.	./.	./.
chr2	202469361	rs12474206	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,25:30:25:1.00:2
chr2	202490774	rs77570029	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.
chr2	202490812	rs73989521	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,61:32:129:0.473:2	./.	./.	./.
chr2	202494491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.
chr2	202514354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.
chr2	202545608	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.
chr2	202557702	rs6725443	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,105:33:105:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,92:32:92:1.00:2
chr2	202563295	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.
chr2	202575821	rs3219168	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,20:30:20:1.00:2	0/1:1,21:32:22:0.955:2	0/1:12,8:32:20:0.400:2	0/1:0,31:33:31:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,26:32:26:1.00:2
chr2	202580514	rs34946105	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,90:32:175:0.514:2	0/1:60,64:32:124:0.516:2	./.	./.	./.	0/1:75,89:32:164:0.543:2	./.	./.	./.	0/1:83,108:32:191:0.565:2	./.
chr2	202598113	rs2276615	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,22:31:68:0.324:2	0/1:18,18:32:36:0.500:2	./.	0/1:0,74:29:74:1.00:2	0/1:27,13:30:40:0.325:2	0/1:38,19:30:57:0.333:2	0/1:1,36:30:37:0.973:2	./.	0/1:0,77:30:77:1.00:2	./.	0/1:72,45:30:117:0.385:2
chr2	202606499	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.
chr2	202625615	rs3219156	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:31:136:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,170:31:170:1.00:2	0/1:0,148:30:148:1.00:2	0/1:0,169:30:169:1.00:2	0/1:2,133:31:135:0.985:2	0/1:1,182:31:183:0.995:2	0/1:0,156:31:156:1.00:2	0/1:2,146:31:148:0.986:2	0/1:0,177:31:177:1.00:2
chr2	202630513	rs10194619	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,48:32:108:0.449:2	0/1:32,21:32:53:0.396:2	0/1:0,27:32:27:1.00:2	./.	0/1:45,39:31:84:0.464:2	0/1:53,52:32:105:0.495:2	./.	0/1:75,48:32:123:0.390:2	./.	0/1:1,90:32:91:0.989:2	./.
chr2	202633582	rs3219153	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,23:31:59:0.390:2	0/1:12,12:32:24:0.500:2	0/1:0,8:32:8:1.00:2	./.	0/1:23,34:32:57:0.596:2	0/1:37,26:32:63:0.413:2	./.	0/1:35,29:31:64:0.453:2	./.	0/1:0,61:32:61:1.00:2	./.
chr2	202899481	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:31:38:0.079:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2
chr2	202899499	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	202900348	rs148824946	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.
chr2	202900409	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.
chr2	202900826	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2	./.	./.	./.	./.	./.	./.
chr2	202901235	rs13034206	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,10:28:35:0.286:2	./.	0/1:13,7:32:20:0.350:2	./.
chr2	202901279	rs13034579	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,12:31:39:0.308:2	./.	0/1:14,4:32:18:0.222:2	./.
chr2	202901388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.
chr2	202939654	rs10221698	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,26:32:53:0.491:2	0/1:23,22:33:45:0.489:2	0/1:5,4:32:9:0.444:2	./.	0/1:0,77:32:77:1.00:2	0/1:0,52:32:52:1.00:2	0/1:32,35:32:67:0.522:2	0/1:64,41:32:105:0.390:2	./.	0/1:0,61:31:61:1.00:2	./.
chr2	202939790	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2
chr2	202964380	rs2882486	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,50:31:95:0.526:2	0/1:19,34:32:53:0.642:2	0/1:0,12:32:12:1.00:2	0/1:60,52:32:112:0.464:2	0/1:73,54:31:127:0.425:2	./.	./.	0/1:1,151:31:152:0.993:2	./.	0/1:1,100:32:102:0.990:2	./.
chr2	202964517	rs10197514	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,23:32:35:0.657:2	0/1:0,31:31:31:1.00:2	0/1:27,17:30:44:0.386:2	./.	./.	./.	0/1:18,21:32:39:0.538:2
chr2	202974360	rs12615065	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,5:32:16:0.313:2	0/1:11,7:31:18:0.389:2	./.	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.	0/1:28,13:32:41:0.317:2	./.	0/1:14,20:31:34:0.588:2
chr2	203019512	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.
chr2	203052895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:29:39:0.103:2	./.	./.	./.	./.	./.
chr2	203052947	rs35468542	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.
chr2	203084762	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:32:100:0.040:2	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.
chr2	203103192	rs189758392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:31:57:0.421:2	./.	./.	./.	./.
chr2	203139844	rs80282360	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,42:31:100:0.420:2	0/1:35,34:29:69:0.493:2	./.	0/1:47,38:30:85:0.447:2	0/1:37,27:29:64:0.422:2	./.	./.	0/1:39,32:29:71:0.451:2	./.	./.	./.
chr2	203155936	rs3731700	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,22:33:54:0.407:2	0/1:17,12:33:29:0.414:2	./.	0/1:29,34:33:63:0.540:2	0/1:13,10:33:23:0.435:2	./.	./.	0/1:48,22:33:70:0.314:2	./.	./.	./.
chr2	203168173	rs1054446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,56:32:128:0.438:2	./.
chr2	203421199	rs1061157	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,14:30:31:0.452:2	0/1:12,6:31:18:0.333:2	./.	0/1:16,11:30:27:0.407:2	0/1:19,12:30:31:0.387:2	./.	./.	0/1:27,11:29:38:0.289:2	./.	./.	./.
chr2	203644285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.
chr2	203676480	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.
chr2	203680632	rs149686236	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:33:33:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr2	203765756	rs35212307	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,23:30:42:0.548:2	0/1:0,53:29:53:1.00:2	0/1:26,17:29:43:0.395:2	./.	./.	./.	./.
chr2	203817297	rs115268453	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,10:32:27:0.370:2	0/1:16,7:31:23:0.304:2	./.	./.	./.	./.	./.
chr2	203846817	rs72932557	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,30:30:61:0.492:2	0/1:2,70:30:72:0.972:2	0/1:47,31:31:78:0.397:2	./.	./.	./.	./.
chr2	203914678	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.
chr2	203949202	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:34:142:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	203990789	rs72934556	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,69:32:151:0.457:2	0/1:1,142:32:143:0.993:2	0/1:78,59:33:137:0.431:2	./.	./.	./.	./.
chr2	204062061	rs4675323	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,72:30:72:1.00:2	0/1:1,67:29:68:0.985:2	0/1:0,97:28:97:1.00:2
chr2	204066437	rs201986939	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.
chr2	204111530	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.
chr2	204116690	rs2043449	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,51:31:51:1.00:2
chr2	204131294	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.	./.	./.	./.
chr2	204154552	rs1048013	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,156:32:159:0.987:2	0/1:3,76:32:80:0.962:2	./.	0/1:77,57:31:134:0.425:2	./.	./.	0/1:80,59:32:139:0.424:2	0/1:0,132:31:132:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,94:31:96:1.00:2	0/1:3,188:32:191:0.984:2
chr2	204304214	rs2465520	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,42:30:72:0.583:2	./.	./.	./.	./.
chr2	204305093	rs3814365	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,47:27:47:1.00:2	0/1:0,23:28:23:1.00:2	./.	0/1:1,54:27:55:0.982:2	./.	./.	0/1:18,31:29:49:0.633:2	0/1:3,60:28:63:0.952:2	0/1:31,19:27:50:0.380:2	0/1:0,40:29:40:1.00:2	0/1:1,53:28:54:0.981:2
chr2	204305362	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr2	204322298	rs2469953	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:33:38:0.974:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,40:33:40:1.00:2	./.	./.	0/1:18,11:34:29:0.379:2	0/1:1,32:31:33:0.970:2	0/1:21,16:35:37:0.432:2	0/1:0,13:32:13:1.00:2	0/1:0,41:33:41:1.00:2
chr2	204354729	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,7:32:146:0.048:2
chr2	204591513	rs56087636	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:32:43:0.488:2	./.	./.	./.	./.
chr2	204732714	rs231775	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,83:33:181:0.459:2	0/1:53,25:33:78:0.321:2	0/1:17,15:33:32:0.469:2	./.	0/1:93,97:32:190:0.511:2	0/1:114,75:33:189:0.397:2	./.	./.	./.	./.	0/1:0,189:32:189:1.00:2
chr2	204735573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.
chr2	204820684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.	./.	./.	./.	./.	./.
chr2	204824283	rs10172036	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,37:32:73:0.507:2	0/1:31,16:32:47:0.340:2	./.	./.	./.	0/1:49,27:32:76:0.355:2	./.	./.	0/1:1,93:34:94:0.989:2	0/1:30,37:33:67:0.552:2	0/1:38,58:33:96:0.604:2
chr2	204824324	rs10183087	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,16:31:61:0.262:2	./.	./.	0/1:42,29:34:73:0.408:2	./.	./.
chr2	205829991	rs236843	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,30:32:77:0.390:2	0/1:29,22:33:51:0.431:2	0/1:0,13:32:13:1.00:2	0/1:46,43:33:89:0.483:2	0/1:36,26:32:62:0.419:2	0/1:35,28:32:63:0.444:2	0/1:39,35:33:74:0.473:2	0/1:47,47:32:94:0.500:2	0/1:51,42:33:93:0.452:2	0/1:0,70:32:70:1.00:2	0/1:0,75:32:75:1.00:2
chr2	205912403	rs1510765	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,13:29:36:0.361:2	0/1:15,14:28:29:0.483:2	./.	./.	0/1:0,28:30:28:1.00:2	0/1:33,31:30:64:0.484:2	./.	0/1:30,26:28:56:0.464:2	0/1:42,26:30:68:0.382:2	0/1:0,39:30:39:1.00:2	0/1:0,58:28:58:1.00:2
chr2	205969220	rs2289025	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,11:31:32:0.344:2	0/1:7,15:32:22:0.682:2	./.	0/1:23,15:31:38:0.395:2	0/1:19,12:31:31:0.387:2	0/1:0,29:31:29:1.00:2	0/1:10,9:31:19:0.474:2	0/1:1,27:31:28:0.964:2	0/1:20,27:32:47:0.574:2	0/1:0,24:31:24:1.00:2	0/1:0,27:32:27:1.00:2
chr2	205986321	rs2289023	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:40,26:33:66:0.394:2	0/1:25,15:32:40:0.375:2	./.	./.	0/1:24,21:32:45:0.467:2	0/1:44,13:31:57:0.228:2	./.	./.	./.	0/1:0,76:32:76:1.00:2	0/1:36,38:32:74:0.514:2
chr2	205986505	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:30:73:0.068:2	./.
chr2	205990353	rs2276676	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:31:15:0.467:2	0/1:28,47:32:75:0.627:2	./.	0/1:69,64:32:133:0.481:2	0/1:61,43:33:104:0.413:2	0/1:115,45:33:160:0.281:2	./.	./.	./.
chr2	206305156	rs10185378	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:66,57:31:123:0.463:2	0/1:43,28:32:71:0.394:2	./.	./.	./.	./.	0/1:79,66:31:145:0.455:2	./.	./.	./.	./.
chr2	206305262	rs61741390	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,42:31:108:0.389:2
chr2	206305364	rs200838968	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,6:22:45:0.133:2	./.	./.	./.	./.	./.	./.	0/1:48,10:13:58:0.172:2	./.	./.	0/1:48,13:21:61:0.213:2
chr2	206364737	rs10197347	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:28:10:1.00:2	0/1:37,42:29:79:0.532:2	./.	0/1:49,33:29:82:0.402:2	0/1:44,27:29:71:0.380:2	./.	0/1:39,35:31:74:0.473:2	./.	0/1:33,27:29:60:0.450:2
chr2	206418114	rs368688012	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:34:64:0.063:2	./.	./.
chr2	206480393	rs17682782	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:31:101:0.475:2	./.	0/1:41,29:30:70:0.414:2	./.
chr2	206581033	rs849541	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:58:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,41:33:41:1.00:2	0/1:1,66:32:67:0.985:2
chr2	206581049	rs35678298	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,66:31:66:1.00:2	./.	./.	./.
chr2	206590686	rs2228639	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,69:29:153:0.451:2	0/1:55,35:29:90:0.389:2	./.	./.	./.	./.	./.	./.	0/1:89,97:31:186:0.522:2	./.	./.
chr2	206592695	rs849526	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,24:30:55:0.436:2	0/1:23,7:29:30:0.233:2	0/1:0,7:31:7:1.00:2	./.	0/1:32,25:30:57:0.439:2	./.	0/1:0,66:30:66:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,74:30:74:1.00:2	0/1:25,30:30:55:0.545:2	0/1:42,41:28:83:0.494:2
chr2	206608039	rs849568	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,29:30:29:1.00:2
chr2	206610502	rs849563	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:28:81:0.420:2	./.	./.	0/1:42,31:30:73:0.425:2	./.	./.
chr2	206874339	rs817991	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,44:32:95:0.463:2	0/1:21,24:32:45:0.533:2	0/1:8,10:33:18:0.556:2	./.	0/1:45,54:32:99:0.545:2	./.	./.	0/1:0,101:32:101:1.00:2	./.	0/1:47,30:32:77:0.390:2	0/1:46,44:32:90:0.489:2
chr2	206911228	rs2909111	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:11,6:32:17:0.353:2	0/1:6,9:32:15:0.600:2	0/1:0,2:31:2:1.00:2	./.	0/1:5,8:31:13:0.615:2	./.	./.	0/1:0,23:31:23:1.00:2	./.	0/1:10,9:31:19:0.474:2	0/1:9,20:32:29:0.690:2
chr2	206921090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.
chr2	206921451	rs818009	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,85:33:86:0.988:2	0/1:0,48:32:48:1.00:2	./.	0/1:66,54:32:120:0.450:2	0/1:0,116:32:116:1.00:2	0/1:73,69:32:142:0.486:2	0/1:1,111:33:112:0.991:2	0/1:0,124:33:124:1.00:2	0/1:59,54:34:113:0.478:2	0/1:67,42:33:109:0.385:2	0/1:78,64:33:142:0.451:2
chr2	206921562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:198:0.020:2	./.	./.	./.	./.
chr2	207006676	rs1801318	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:32:11:0.364:2	0/1:60,45:33:105:0.429:2	./.	0/1:38,35:31:73:0.479:2	./.	./.	0/1:54,48:33:102:0.471:2	0/1:41,33:32:74:0.446:2	0/1:41,39:32:80:0.488:2
chr2	207008763	rs1127566	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,30:32:48:0.625:2	0/1:13,15:32:28:0.536:2	./.	0/1:0,40:32:40:1.00:2	0/1:11,9:32:20:0.450:2	0/1:0,36:32:36:1.00:2	0/1:14,12:32:26:0.462:2	./.	0/1:21,24:33:45:0.533:2	0/1:21,13:31:34:0.382:2	0/1:31,24:31:55:0.436:2
chr2	207025367	rs367973620	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.	./.
chr2	207026100	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.
chr2	207026113	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.
chr2	207026125	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:30:135:0.030:2	./.	./.
chr2	207026141	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:29:110:0.036:2
chr2	207041053	rs3732083	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:0,97:32:97:1.00:2	0/1:30,41:32:71:0.577:2	0/1:1,91:32:93:0.989:2	0/1:46,48:33:94:0.511:2	./.	0/1:38,32:32:70:0.457:2	0/1:52,39:32:91:0.429:2	0/1:62,62:32:124:0.500:2
chr2	207041441	rs3732082	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:39,21:30:60:0.350:2	./.	0/1:35,32:29:67:0.478:2	./.	./.	0/1:51,44:32:95:0.463:2	0/1:32,28:30:60:0.467:2	0/1:52,43:30:95:0.453:2
chr2	207169731	rs10932150	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,38:32:85:0.447:2	0/1:27,13:31:40:0.325:2	./.	./.	0/1:0,36:31:36:1.00:2	0/1:26,25:30:51:0.490:2	0/1:26,20:31:46:0.435:2	0/1:36,25:30:61:0.410:2	./.	./.	./.
chr2	207172627	rs7582864	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,64:33:64:1.00:2	0/1:1,38:33:39:0.974:2	./.	./.	0/1:2,56:32:58:0.966:2	0/1:1,51:32:52:0.981:2	0/1:0,45:32:45:1.00:2	0/1:37,45:32:82:0.549:2	./.	0/1:41,25:31:66:0.379:2	./.
chr2	207173390	rs79484112	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2
chr2	207174316	rs3732084	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,25:32:26:0.962:2	0/1:0,16:33:16:1.00:2	./.	./.	0/1:0,20:32:20:1.00:2	0/1:3,40:31:43:0.930:2	0/1:0,16:33:16:1.00:2	0/1:24,20:31:44:0.455:2	./.	0/1:18,11:32:29:0.379:2	./.
chr2	207175070	rs138061259	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,44:31:97:0.454:2	./.	./.	./.	./.	./.	./.	0/1:68,36:31:104:0.346:2
chr2	207175177	rs149538903	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,12:33:40:0.300:2	./.	./.
chr2	207452797	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	207459463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.	./.
chr2	207459467	rs3732079	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,87:32:194:0.448:2	./.	./.	0/1:114,80:34:194:0.412:2	./.	./.
chr2	207527840	rs2115591	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,178:32:183:0.978:2	0/1:5,184:32:189:0.974:2	0/1:37,19:31:56:0.339:2	./.	0/1:95,91:31:186:0.489:2	0/1:126,73:31:199:0.367:2	0/1:3,174:32:177:0.983:2	0/1:111,87:31:198:0.439:2	0/1:113,83:32:196:0.423:2	0/1:108,82:31:190:0.432:2	0/1:100,94:31:194:0.485:2
chr2	207569623	rs116768218	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,38:33:62:0.613:2	./.	./.
chr2	207570529	rs56067462	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	0/1:2,43:30:45:0.956:2	./.	./.	./.	./.
chr2	207572133	rs67248530	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,84:29:169:0.497:2	./.	./.	0/1:66,64:29:130:0.492:2
chr2	207603221	rs2287632	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,38:33:103:0.369:2	0/1:43,41:32:84:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,72:33:176:0.409:2
chr2	207603234	rs2287631	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,85:32:86:0.988:2	0/1:0,75:32:75:1.00:2	./.	./.	./.	0/1:42,36:31:78:0.462:2	./.	./.	./.	./.	0/1:102,66:33:168:0.393:2
chr2	207619779	rs59358632	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,46:29:83:0.561:2	0/1:22,24:28:46:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,50:28:99:0.505:2
chr2	207620138	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.
chr2	207621759	rs1990849	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:1,31:32:32:0.969:2	0/1:0,5:31:5:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,59:32:59:1.00:2
chr2	207631446	rs147727753	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:33:53:0.453:2	0/1:16,18:32:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	207631461	rs3762568	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,30:32:51:0.588:2	0/1:21,21:32:42:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,54:32:111:0.486:2
chr2	207820231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr2	207820276	rs13420911	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,33:32:80:0.413:2	0/1:18,15:31:33:0.455:2	./.	0/1:48,19:31:67:0.284:2	./.	./.	0/1:0,58:31:58:1.00:2	0/1:51,36:31:87:0.414:2	0/1:40,31:31:71:0.437:2	0/1:27,23:32:50:0.460:2	0/1:0,75:31:75:1.00:2
chr2	207824384	rs11903403	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,45:32:93:0.484:2	0/1:20,28:32:48:0.583:2	./.	0/1:53,67:32:120:0.558:2	./.	./.	0/1:1,94:32:95:0.989:2	0/1:66,53:32:119:0.445:2	0/1:70,65:33:135:0.481:2	0/1:58,38:32:96:0.396:2	0/1:1,169:32:170:0.994:2
chr2	207825656	rs13397039	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,45:33:98:0.459:2	0/1:26,27:30:53:0.509:2	./.	0/1:81,60:32:141:0.426:2	./.	./.	0/1:0,106:32:106:1.00:2	0/1:87,53:30:140:0.379:2	0/1:65,68:33:133:0.511:2	0/1:64,59:32:123:0.480:2	0/1:0,117:32:117:1.00:2
chr2	207827189	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:154:0.026:2	./.	./.
chr2	207827220	rs62617140	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,66:31:126:0.524:2	./.
chr2	207833983	rs7582305	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,49:28:122:0.402:2	0/1:23,20:28:43:0.465:2	0/1:8,3:34:11:0.273:2	0/1:89,72:29:161:0.447:2	./.	./.	0/1:0,142:29:142:1.00:2	./.	0/1:55,79:29:134:0.590:2	0/1:77,58:29:135:0.430:2	0/1:59,61:29:120:0.508:2
chr2	207953187	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.
chr2	207988613	rs2700166	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:30:126:0.992:2	0/1:0,64:31:64:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,151:30:151:1.00:2	0/1:0,155:30:155:1.00:2	0/1:0,156:30:156:1.00:2	0/1:0,154:30:154:1.00:2	0/1:0,173:30:173:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,141:30:141:1.00:2
chr2	208030273	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.	./.	./.	./.	./.
chr2	208030291	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.	./.	./.	./.
chr2	208134114	rs116237969	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.
chr2	208442334	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.
chr2	208477852	rs2551949	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,56:32:120:0.467:2	0/1:36,41:32:77:0.532:2	0/1:0,12:31:12:1.00:2	0/1:78,50:32:128:0.391:2	0/1:61,44:31:105:0.419:2	0/1:2,142:31:144:0.986:2	0/1:0,86:31:86:1.00:2	0/1:82,83:32:165:0.503:2	0/1:75,67:32:142:0.472:2	0/1:0,108:32:108:1.00:2	0/1:0,189:32:189:1.00:2
chr2	208477956	rs2709416	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,37:31:57:0.649:2	0/1:18,14:32:32:0.438:2	0/1:0,5:31:5:1.00:2	0/1:35,23:31:58:0.397:2	0/1:21,26:31:47:0.553:2	0/1:0,51:31:51:1.00:2	0/1:1,49:31:50:0.980:2	0/1:29,27:31:56:0.482:2	0/1:34,35:32:69:0.507:2	0/1:0,43:30:43:1.00:2	0/1:0,69:31:69:1.00:2
chr2	208478055	rs17520056	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,22:33:46:0.478:2	0/1:14,11:33:25:0.440:2	./.	0/1:14,25:32:39:0.641:2	0/1:22,12:32:34:0.353:2	0/1:7,15:33:22:0.682:2	./.	./.	0/1:23,15:34:38:0.395:2	./.	0/1:31,24:32:55:0.436:2
chr2	208589572	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:31:178:0.028:2	0/1:186,4:33:190:0.021:2
chr2	208589594	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:28:155:0.032:2	./.
chr2	208589601	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:32:145:0.034:2	./.
chr2	208632817	rs35994626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	./.	./.	./.
chr2	208633233	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.	./.
chr2	208633413	rs4675711	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:0,2:30:2:1.00:2
chr2	208633627	rs55717133	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,18:32:30:0.600:2	0/1:15,12:32:27:0.444:2	./.	0/1:17,7:31:24:0.292:2	0/1:4,4:33:8:0.500:2	./.	./.	./.	0/1:0,34:32:34:1.00:2	./.	0/1:20,19:32:39:0.487:2
chr2	208811097	rs10932215	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,17:32:17:1.00:2	0/1:3,7:31:10:0.700:2	0/1:29,27:31:56:0.482:2	0/1:29,11:30:40:0.275:2	0/1:0,52:31:52:1.00:2	0/1:20,21:32:41:0.512:2	0/1:33,24:31:57:0.421:2	0/1:0,39:32:39:1.00:2	0/1:0,42:32:42:1.00:2	0/1:49,12:33:61:0.197:2
chr2	208841964	rs4441448	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,55:28:106:0.519:2	0/1:46,35:27:81:0.432:2	./.	0/1:0,116:28:116:1.00:2	0/1:0,136:28:136:1.00:2	0/1:1,140:28:142:0.993:2	0/1:68,72:28:140:0.514:2	0/1:98,90:28:188:0.479:2	0/1:68,76:29:144:0.528:2	0/1:0,106:29:106:1.00:2	0/1:71,58:27:129:0.450:2
chr2	208842276	rs115156379	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:30:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	208986637	rs2305430	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,47:31:47:1.00:2
chr2	208988907	rs150857132	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2
chr2	208988958	rs140206746	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	./.	./.
chr2	208989037	rs2242074	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,16:31:42:0.381:2	0/1:21,22:29:43:0.512:2	0/1:11,5:29:16:0.313:2	0/1:47,38:29:85:0.447:2	0/1:1,71:28:72:0.986:2	0/1:0,91:30:91:1.00:2	0/1:61,34:29:95:0.358:2	0/1:0,80:29:80:1.00:2	0/1:0,60:30:60:1.00:2	0/1:46,30:30:76:0.395:2	0/1:31,17:30:48:0.354:2
chr2	208989169	rs113206037	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:2,4:34:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	208992957	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.
chr2	209007559	rs796287	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:32:157:1.00:2	0/1:0,84:32:84:1.00:2	0/1:15,15:33:30:0.500:2	0/1:1,163:33:164:0.994:2	0/1:2,147:32:149:0.987:2	0/1:2,167:32:169:0.988:2	0/1:93,68:33:161:0.422:2	0/1:0,161:33:161:1.00:2	0/1:2,166:34:168:0.988:2	0/1:87,75:33:162:0.463:2	0/1:0,164:32:164:1.00:2
chr2	209010558	rs2854723	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:27:40:1.00:2	0/1:1,17:29:18:0.944:2	./.	0/1:27,30:28:57:0.526:2	0/1:0,47:28:47:1.00:2	0/1:1,50:27:51:0.980:2	0/1:19,38:29:57:0.667:2	0/1:0,69:28:69:1.00:2	0/1:0,52:29:52:1.00:2	0/1:25,16:28:41:0.390:2	0/1:1,36:28:37:0.973:2
chr2	209010823	rs184047772	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,27:29:87:0.310:2	0/1:90,30:30:120:0.250:2	./.	./.	0/1:70,40:31:110:0.364:2	./.	./.
chr2	209010824	rs188633178	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,27:30:86:0.314:2	0/1:93,30:30:123:0.244:2	./.	./.	0/1:72,40:31:112:0.357:2	./.	./.
chr2	209010825	rs192997184	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,27:30:85:0.318:2	0/1:92,30:31:122:0.246:2	./.	./.	0/1:72,40:32:112:0.357:2	./.	./.
chr2	209030572	rs6721025	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,22:30:33:0.667:2	0/1:9,12:30:21:0.571:2	0/1:1,4:29:5:0.800:2	0/1:0,34:30:34:1.00:2	0/1:20,13:31:33:0.394:2	0/1:0,40:30:40:1.00:2	0/1:21,8:30:29:0.276:2	0/1:0,39:30:39:1.00:2	0/1:0,52:31:52:1.00:2	0/1:14,15:32:29:0.517:2	0/1:32,22:31:54:0.407:2
chr2	209030578	rs796281	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,20:32:29:0.690:2	./.	./.	0/1:14,14:32:28:0.500:2	./.
chr2	209036712	rs10804166	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:33:133:1.00:2	0/1:0,50:32:50:1.00:2	0/1:13,8:33:21:0.381:2	0/1:0,118:33:118:1.00:2	0/1:54,57:32:111:0.514:2	0/1:2,122:32:124:0.984:2	0/1:0,147:32:147:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,154:32:154:1.00:2
chr2	209036778	rs6435421	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:30:96:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,86:30:86:1.00:2	0/1:1,113:30:114:0.991:2	0/1:0,110:31:110:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,129:29:129:1.00:2
chr2	209108317	rs34218846	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:30:47:0.511:2	./.
chr2	209113192	rs11554137	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,75:29:167:0.449:2	./.
chr2	209179939	rs16840913	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,54:30:118:0.458:2	./.	./.	./.
chr2	209184980	rs10932258	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,97:32:97:1.00:2
chr2	209184999	rs10932259	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,111:33:111:1.00:2
chr2	209189694	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr2	209190330	rs2363468	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,58:28:58:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,68:30:68:1.00:2
chr2	209190519	rs893254	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,44:32:44:1.00:2
chr2	209190528	rs893253	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,42:33:42:1.00:2
chr2	209190632	rs999890	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:28:66:0.485:2	./.	0/1:33,19:28:52:0.365:2	./.
chr2	209190649	rs999891	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:33:80:0.488:2	./.	0/1:34,27:32:61:0.443:2	./.
chr2	209191082	rs1529979	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:32:118:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,150:31:150:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,177:32:177:1.00:2
chr2	209191099	rs1529978	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:29:117:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,137:29:137:1.00:2	0/1:0,153:30:153:1.00:2	0/1:1,153:30:154:0.994:2	0/1:0,184:30:184:1.00:2	0/1:0,171:30:171:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,170:30:170:1.00:2
chr2	209207335	rs35784095	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:32:71:0.394:2	./.	./.
chr2	209209827	rs2304544	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:31:127:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,110:30:110:1.00:2	0/1:3,75:29:79:0.962:2	0/1:0,90:30:90:1.00:2	0/1:1,60:30:61:0.984:2	0/1:0,86:29:87:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,150:30:150:1.00:2
chr2	209212707	rs2304545	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,159:33:159:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,184:33:184:1.00:2	0/1:0,169:32:170:1.00:2	0/1:1,186:32:187:0.995:2	0/1:0,175:33:175:1.00:2	0/1:108,78:33:186:0.419:2	0/1:0,173:34:173:1.00:2	0/1:93,90:33:183:0.492:2	0/1:0,173:32:173:1.00:2
chr2	209214770	rs2118297	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,161:30:161:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,24:28:24:1.00:2	0/1:1,176:30:177:0.994:2	0/1:0,78:29:78:1.00:2	0/1:0,181:30:181:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,188:30:188:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,159:30:159:1.00:2	0/1:2,182:30:184:0.989:2
chr2	209215571	rs13020468	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,57:32:133:0.429:2	./.	./.	./.
chr2	209215586	rs994697	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,121:33:121:1.00:2	0/1:2,138:32:140:0.986:2	0/1:0,113:34:113:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,128:32:128:1.00:2
chr2	209215663	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.
chr2	209218868	rs150413712	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:32:64:0.453:2	./.	./.	./.
chr2	209353800	rs16841294	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,93:32:189:0.492:2	./.	0/1:70,70:32:140:0.500:2	./.
chr2	209358027	rs3820900	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:31:121:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,160:31:160:1.00:2	0/1:92,69:31:161:0.429:2	0/1:88,81:31:169:0.479:2	0/1:2,137:31:139:0.986:2	0/1:3,173:31:176:0.983:2	0/1:81,97:32:178:0.545:2	0/1:1,120:31:121:0.992:2	0/1:0,152:30:152:1.00:2
chr2	210545505	rs201319995	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,43:31:87:0.494:2	./.	./.	./.	./.	./.	./.
chr2	210559865	rs35927101	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,34:32:65:0.523:2	./.	./.	./.	./.	./.	./.
chr2	210561352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.
chr2	210636854	rs145528914	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	210637855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2
chr2	210705348	rs10178675	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:33:14:0.214:2	./.	./.	./.	0/1:81,67:32:148:0.453:2	./.	./.	./.	./.
chr2	210787018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.
chr2	210810599	rs10178327	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:29:95:0.474:2	0/1:92,47:28:140:0.338:2	./.	./.	./.
chr2	210810644	rs10202111	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,46:32:104:0.442:2	0/1:85,46:32:131:0.351:2	./.	./.	./.
chr2	210818971	rs16843977	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,31:31:75:0.413:2	0/1:48,44:29:92:0.478:2	./.	./.	./.
chr2	210843383	rs2075117	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,79:31:79:1.00:2	0/1:51,44:30:96:0.463:2	0/1:0,74:31:74:1.00:2	0/1:47,40:31:88:0.460:2	0/1:37,49:31:86:0.570:2	0/1:0,65:32:65:1.00:2	0/1:30,30:31:60:0.500:2	0/1:33,27:31:60:0.450:2
chr2	211060050	rs2286963	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:33:110:0.418:2	0/1:0,76:33:76:1.00:2	0/1:49,48:33:97:0.495:2
chr2	211074909	rs3764913	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:34:98:0.402:2	0/1:0,65:33:65:1.00:2	0/1:37,30:33:67:0.448:2
chr2	211085491	rs61731470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:32:27:0.296:2
chr2	211342502	rs17552879	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:2,16:32:18:0.889:2	0/1:5,6:31:11:0.545:2	0/1:27,26:31:53:0.491:2	0/1:0,23:31:23:1.00:2	0/1:36,11:31:47:0.234:2	./.	0/1:2,47:31:49:0.959:2	0/1:0,58:32:59:1.00:2	0/1:0,52:32:52:1.00:2	0/1:50,29:32:79:0.367:2
chr2	211454890	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	211456637	rs1047883	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,27:30:55:0.491:2	./.	0/1:0,51:30:51:1.00:2	0/1:0,42:30:42:1.00:2	./.	./.	0/1:37,14:30:51:0.275:2	0/1:0,50:29:50:1.00:2
chr2	211456639	rs2229589	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:30:54:0.500:2	./.	0/1:0,51:32:51:1.00:2	0/1:0,42:31:42:1.00:2	./.	./.	0/1:37,13:30:50:0.260:2	0/1:0,51:31:51:1.00:2
chr2	211481257	rs2287599	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,36:33:71:0.507:2	0/1:34,29:32:63:0.460:2	0/1:2,51:31:53:0.962:2	0/1:0,40:32:40:1.00:2	./.	./.	0/1:32,29:33:61:0.475:2	0/1:0,56:32:56:1.00:2
chr2	211532934	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,8:30:37:0.216:2	./.	./.
chr2	211539650	rs140578009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,62:32:150:0.413:2	./.	./.
chr2	211540507	rs1047891	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:57,47:31:105:0.452:2	0/1:29,30:30:59:0.508:2	0/1:5,6:32:11:0.545:2	./.	./.	0/1:64,66:31:130:0.508:2	0/1:71,97:31:168:0.577:2	0/1:99,86:31:185:0.465:2	./.	./.	./.
chr2	212251864	rs3748962	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,73:33:139:0.525:2	0/1:54,82:31:136:0.603:2	0/1:66,73:32:139:0.525:2	0/1:71,50:32:121:0.413:2	./.	./.	./.	./.
chr2	212288902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	212530074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2
chr2	212566843	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,51:32:133:0.383:2	0/1:54,36:32:90:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	213403248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,4:29:46:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr2	214012508	rs6709554	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,79:31:159:0.497:2	./.	./.	0/1:63,59:31:122:0.484:2	0/1:67,56:32:123:0.455:2	./.	./.	0/1:86,60:32:147:0.411:2
chr2	214228792	rs12469417	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,53:32:54:0.981:2	0/1:0,70:33:70:1.00:2	0/1:55,36:32:91:0.396:2	0/1:0,121:32:121:1.00:2
chr2	214354714	rs10167688	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:31:69:0.478:2	./.
chr2	214727221	rs2042791	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,119:32:120:0.992:2	./.	0/1:34,48:32:82:0.585:2	./.	0/1:61,59:31:120:0.492:2	./.	0/1:42,57:32:99:0.576:2	0/1:51,55:32:106:0.519:2
chr2	214794743	rs12623569	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	0/1:50,43:32:93:0.462:2	0/1:62,51:33:113:0.451:2	./.	0/1:88,69:32:157:0.439:2	0/1:85,69:33:154:0.448:2	0/1:59,58:32:117:0.496:2	./.
chr2	215617178	rs28997576	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.
chr2	215632255	rs2070094	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:60,29:32:89:0.326:2	0/1:20,17:32:37:0.459:2	./.	./.	./.	./.	./.	0/1:88,54:30:142:0.380:2	0/1:1,111:32:112:0.991:2	0/1:52,38:32:90:0.422:2	0/1:0,103:32:104:1.00:2
chr2	215632256	rs113211432	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,28:32:89:0.315:2	0/1:20,17:32:37:0.459:2	0/1:0,7:29:7:1.00:2	0/1:63,58:28:121:0.479:2	0/1:92,42:28:134:0.313:2	0/1:67,54:28:121:0.446:2	0/1:71,66:29:137:0.482:2	0/1:88,54:31:142:0.380:2	0/1:0,112:33:112:1.00:2	0/1:50,39:31:89:0.438:2	0/1:0,104:32:104:1.00:2
chr2	215645464	rs2229571	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,103:33:105:0.981:2	0/1:0,50:32:50:1.00:2	./.	./.	./.	0/1:53,58:33:111:0.523:2	0/1:36,61:33:97:0.629:2	0/1:72,57:32:129:0.442:2	0/1:0,132:33:132:1.00:2	0/1:0,95:32:96:1.00:2	0/1:0,110:33:111:1.00:2
chr2	215645545	rs2070096	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,43:30:82:0.524:2	0/1:11,28:29:39:0.718:2	./.	./.	./.	./.	./.	./.
chr2	215645584	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2	./.	./.	./.	./.	./.	./.
chr2	215645989	rs28997574	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:31:50:0.500:2	./.
chr2	215674224	rs1048108	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.	0/1:2,7:30:9:0.778:2	0/1:8,4:31:12:0.333:2	./.	0/1:1,14:30:15:0.933:2
chr2	215798867	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.
chr2	215807702	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	./.	./.
chr2	215813331	rs726070	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,24:32:69:0.348:2	./.	./.	./.	./.	./.	./.	./.
chr2	215820013	rs10498027	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:69,71:32:140:0.507:2	0/1:57,43:32:100:0.430:2	0/1:11,14:32:25:0.560:2	./.	./.	./.	0/1:95,61:32:156:0.391:2	0/1:123,65:32:189:0.346:2	0/1:109,84:33:193:0.435:2	0/1:81,58:32:139:0.417:2	0/1:97,90:32:187:0.481:2
chr2	215839570	rs16853022	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,33:33:58:0.569:2	./.	./.	./.	./.
chr2	215840548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr2	215845268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.	./.
chr2	215851303	rs34351934	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:32:65:0.523:2	0/1:1,41:32:42:0.976:2	./.	./.	0/1:24,32:33:56:0.571:2	0/1:21,33:33:54:0.611:2
chr2	215854156	rs71428357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,39:32:81:0.481:2	0/1:37,30:33:67:0.448:2	./.	./.	0/1:40,47:33:87:0.540:2	./.
chr2	215854314	rs80181772	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,8:19:121:0.067:2
chr2	215865575	rs10498030	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,75:29:159:0.472:2	0/1:1,107:29:108:0.991:2	./.	./.	./.	./.	0/1:66,66:30:132:0.500:2	./.
chr2	215876166	rs7560008	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,23:30:24:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,51:30:51:1.00:2
chr2	215876371	rs10198064	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,61:29:124:0.492:2	0/1:5,114:29:119:0.958:2	./.	./.	./.	0/1:70,66:30:136:0.485:2
chr2	215882749	rs148979792	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,41:32:69:0.594:2
chr2	215891581	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2
chr2	215901774	rs17501837	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:31:47:0.532:2	./.	0/1:18,11:31:29:0.379:2	./.	0/1:1,46:30:47:0.979:2	./.	./.	0/1:0,71:31:71:1.00:2
chr2	215910724	rs11890512	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,36:33:73:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr2	216176824	rs28366035	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2
chr2	216190020	rs2372536	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,45:32:90:0.500:2	0/1:29,20:32:49:0.408:2	0/1:1,10:31:11:0.909:2	./.	./.	0/1:46,39:31:85:0.459:2	./.	0/1:45,46:31:91:0.505:2	0/1:51,54:33:105:0.514:2	0/1:48,31:32:80:0.392:2	./.
chr2	216211604	rs112288749	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:33:112:0.455:2	./.
chr2	216226709	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	./.	./.
chr2	216229692	rs11651	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:26,23:30:49:0.469:2	0/1:19,24:29:43:0.558:2	0/1:0,11:29:11:1.00:2	./.	./.	0/1:49,61:30:110:0.555:2	./.	0/1:72,71:30:143:0.497:2	0/1:73,58:31:132:0.443:2	0/1:49,58:31:107:0.542:2	0/1:65,55:29:120:0.458:2
chr2	216235089	rs1250209	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,133:31:133:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,166:32:166:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,146:33:146:1.00:2
chr2	216236711	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,63:33:132:0.477:2	./.	./.
chr2	216236712	rs17449032	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,48:30:114:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr2	216242917	rs1132741	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,14:32:35:0.400:2	0/1:10,15:31:25:0.600:2	./.	0/1:29,10:32:39:0.256:2	./.	0/1:39,16:31:56:0.291:2	0/1:24,12:32:36:0.333:2	0/1:21,25:30:46:0.543:2
chr2	216249587	rs13652	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,160:31:160:1.00:2	0/1:1,113:32:114:0.991:2	0/1:21,21:31:42:0.500:2	0/1:116,82:31:198:0.414:2	0/1:0,197:31:197:1.00:2	0/1:0,192:30:192:1.00:2	0/1:120,77:31:197:0.391:2	0/1:97,98:31:195:0.503:2	0/1:0,197:32:197:1.00:2	0/1:0,196:31:196:1.00:2	0/1:0,193:31:193:1.00:2
chr2	216251538	rs139078629	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:30:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	216256463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr2	216269209	rs1053238	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,80:32:80:1.00:2	0/1:0,60:32:60:1.00:2	./.	./.	0/1:87,46:32:133:0.346:2	0/1:62,57:32:119:0.479:2	./.	./.	0/1:55,58:33:113:0.513:2	0/1:69,39:33:108:0.361:2	./.
chr2	216269254	rs7589580	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,79:32:79:1.00:2	0/1:0,54:32:54:1.00:2	./.	./.	0/1:80,41:32:121:0.339:2	0/1:73,56:32:129:0.434:2	./.	./.	0/1:51,55:32:106:0.519:2	0/1:68,40:31:108:0.370:2	./.
chr2	216271892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr2	216272020	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr2	216272900	rs2577301	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:32:3:1.00:2	0/1:1,44:32:45:0.978:2	0/1:0,34:32:34:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,55:32:55:1.00:2
chr2	216272907	rs7596677	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:31:45:0.511:2	0/1:18,17:30:35:0.486:2	0/1:30,16:30:46:0.348:2	0/1:29,27:30:56:0.482:2	./.	0/1:24,14:30:38:0.368:2	0/1:23,14:30:37:0.378:2	0/1:32,30:30:62:0.484:2
chr2	216286916	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.
chr2	216298084	rs2289202	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.	0/1:91,77:32:170:0.458:2	./.	./.	0/1:67,60:32:127:0.472:2
chr2	216300482	rs1250259	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,46:31:46:1.00:2	0/1:16,20:31:36:0.556:2	0/1:0,25:32:25:1.00:2	0/1:0,32:32:32:1.00:2	0/1:22,4:31:26:0.154:2	0/1:10,8:31:18:0.444:2	0/1:1,20:32:21:0.952:2
chr2	216878008	rs1864253	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:36,35:29:71:0.493:2	0/1:36,36:29:72:0.500:2	0/1:0,67:29:67:1.00:2	0/1:27,20:30:47:0.426:2	0/1:41,33:29:74:0.446:2	0/1:32,14:31:46:0.304:2	0/1:0,44:29:44:1.00:2	0/1:3,15:29:18:0.833:2
chr2	216904019	rs9288513	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:31:38:0.289:2	./.
chr2	216908679	rs2303842	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	0/1:88,80:32:168:0.476:2	0/1:57,76:33:133:0.571:2	./.	./.	./.	./.
chr2	216916258	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.
chr2	216923679	rs1429148	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:32:94:0.436:2	./.
chr2	216982452	rs28371548	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,39:32:95:0.411:2	0/1:30,21:33:51:0.412:2	./.	./.	0/1:90,65:32:155:0.419:2	./.	./.	./.	./.	./.	./.
chr2	217001831	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,12:30:196:0.061:2	./.
chr2	217012901	rs207906	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,36:29:83:0.434:2	0/1:30,22:30:52:0.423:2	0/1:4,5:29:9:0.556:2	0/1:0,93:30:93:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,93:30:93:1.00:2	0/1:41,29:30:70:0.414:2	0/1:61,47:30:108:0.435:2	0/1:0,106:31:106:1.00:2	0/1:0,81:31:81:1.00:2	0/1:56,63:30:119:0.529:2
chr2	217069876	rs2287561	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,75:30:194:0.387:2	0/1:96,84:29:180:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,71:29:195:0.364:2
chr2	217142568	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.	./.
chr2	217148417	rs876771	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,68:32:68:1.00:2	0/1:1,39:32:40:0.975:2	./.	./.	0/1:35,43:32:78:0.551:2	0/1:0,80:32:80:1.00:2	0/1:56,47:32:103:0.456:2	./.	0/1:46,35:34:81:0.432:2	./.	0/1:1,49:33:50:0.980:2
chr2	217279850	rs35907255	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,59:30:118:0.500:2	./.	./.	./.
chr2	217285104	rs2066522	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,59:32:113:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr2	217315787	rs2066527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,43:29:56:0.768:2
chr2	217342982	rs184390693	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.
chr2	217363613	rs78831740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,87:30:180:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr2	217364013	rs137960636	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:30:53:0.396:2	./.	./.	./.
chr2	217541495	rs138757825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,68:30:197:0.345:2	./.	./.	./.	./.	./.	./.
chr2	217541524	rs149264992	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,54:32:113:0.478:2
chr2	217541582	rs2160549	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:32:158:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,159:33:159:1.00:2	0/1:1,178:33:179:0.994:2	0/1:0,165:34:165:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,140:32:140:1.00:2
chr2	217559193	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.
chr2	217559421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.
chr2	217559493	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	218669225	rs61741262	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:80,74:33:154:0.481:2	0/1:47,43:32:90:0.478:2	0/1:16,14:35:30:0.467:2	./.	./.	./.	0/1:103,88:34:192:0.461:2	0/1:81,108:33:189:0.571:2	0/1:109,81:34:190:0.426:2	./.	./.
chr2	218672782	rs34831382	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,91:32:186:0.489:2	./.	0/1:109,77:32:186:0.414:2	./.	./.	0/1:101,92:32:193:0.477:2
chr2	218674614	rs13417442	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,84:31:164:0.519:2	./.	0/1:64,82:32:146:0.562:2
chr2	218674697	rs918949	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,33:32:69:0.485:2	0/1:42,15:32:57:0.263:2	0/1:0,10:32:10:1.00:2	0/1:56,57:32:113:0.504:2	./.	0/1:36,34:31:70:0.486:2	0/1:3,83:32:86:0.965:2	0/1:0,110:32:110:1.00:2	0/1:0,82:33:82:1.00:2	./.	0/1:2,85:32:87:0.977:2
chr2	218682474	rs12694422	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:17,16:27:33:0.485:2	0/1:14,9:27:23:0.391:2	0/1:4,3:26:7:0.429:2	./.	./.	0/1:37,33:28:70:0.471:2	0/1:1,64:28:65:0.985:2	0/1:2,69:28:71:0.972:2	0/1:0,61:28:61:1.00:2	0/1:21,18:27:39:0.462:2	0/1:0,45:28:45:1.00:2
chr2	218682771	rs3796026	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,8:31:36:0.222:2	0/1:16,12:29:28:0.429:2	0/1:1,2:31:3:0.667:2	./.	./.	0/1:17,8:26:26:0.320:2	0/1:3,25:29:28:0.893:2	0/1:1,38:30:39:0.974:2	0/1:0,30:29:30:1.00:2	0/1:13,6:29:19:0.316:2	0/1:1,27:28:28:0.964:2
chr2	218683139	rs34291329	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	./.	0/1:18,9:30:27:0.333:2
chr2	218683154	rs2571445	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,15:28:26:0.577:2	0/1:9,10:29:19:0.526:2	0/1:0,4:30:4:1.00:2	0/1:23,20:29:43:0.465:2	./.	0/1:26,23:29:49:0.469:2	0/1:1,30:30:31:0.968:2	0/1:1,37:29:38:0.974:2	0/1:0,37:29:37:1.00:2	0/1:11,12:29:23:0.522:2	0/1:0,19:30:19:1.00:2
chr2	218683257	rs2571442	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,41:33:84:0.488:2	0/1:36,26:32:62:0.419:2	./.	./.	./.	0/1:78,52:32:130:0.400:2	0/1:5,88:31:93:0.946:2	0/1:0,125:32:125:1.00:2	0/1:1,117:33:118:0.992:2	0/1:50,29:32:80:0.367:2	0/1:0,79:32:79:1.00:2
chr2	218683294	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	218683368	rs34144104	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,51:32:102:0.500:2	0/1:23,17:32:40:0.425:2	./.	./.	./.	0/1:52,57:31:109:0.523:2	0/1:74,66:31:140:0.471:2	0/1:1,137:31:138:0.993:2	./.	0/1:43,41:31:84:0.488:2	0/1:48,54:30:102:0.529:2
chr2	218694551	rs16858298	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,73:30:137:0.533:2	0/1:39,42:29:81:0.519:2	./.	./.	./.	0/1:110,79:30:189:0.418:2	0/1:110,85:29:196:0.436:2	0/1:92,102:29:194:0.526:2	./.	0/1:68,86:30:154:0.558:2	0/1:106,67:29:173:0.387:2
chr2	218695102	rs3796028	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,12:32:35:0.343:2	0/1:8,7:31:15:0.467:2	./.	0/1:18,10:29:28:0.357:2	0/1:28,25:30:53:0.472:2	./.	./.	./.	./.	./.	./.
chr2	218712306	rs1004814	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,32:32:59:0.542:2	0/1:15,15:30:30:0.500:2	./.	./.	./.	0/1:29,31:32:60:0.517:2	./.	0/1:31,24:31:55:0.436:2
chr2	218712606	rs1364641	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:31:22:0.318:2	0/1:19,10:31:29:0.345:2	./.	0/1:34,5:33:39:0.128:2	./.	0/1:17,21:32:38:0.553:2	./.	0/1:15,9:30:24:0.375:2
chr2	218712726	rs1364642	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,28:32:62:0.452:2	0/1:33,22:31:55:0.400:2	./.	./.	./.	0/1:22,30:33:52:0.577:2	./.	0/1:29,26:32:55:0.473:2
chr2	218712918	rs3796031	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:24,17:30:41:0.415:2	0/1:22,19:30:41:0.463:2	0/1:21,32:30:53:0.604:2	./.	0/1:29,27:31:56:0.482:2	0/1:20,10:32:30:0.333:2	./.	0/1:0,29:31:29:1.00:2
chr2	218712936	rs3796032	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:29:5:0.600:2	0/1:30,18:29:48:0.375:2	0/1:21,20:28:41:0.488:2	./.	./.	./.	0/1:23,11:30:34:0.324:2	./.	0/1:17,15:31:32:0.469:2
chr2	218713282	rs3796033	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,11:31:24:0.458:2	0/1:92,62:31:154:0.403:2	0/1:61,63:31:125:0.508:2	./.	./.	./.	0/1:81,59:31:140:0.421:2	./.	0/1:53,46:31:99:0.465:2
chr2	218745685	rs10199795	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,22:32:22:1.00:2	0/1:2,3:32:5:0.600:2	0/1:0,76:32:76:1.00:2	0/1:47,53:32:100:0.530:2	0/1:0,71:32:71:1.00:2	0/1:4,88:32:92:0.957:2	0/1:53,27:31:80:0.338:2	0/1:0,78:32:78:1.00:2	0/1:40,28:32:68:0.412:2	0/1:18,26:32:44:0.591:2
chr2	218745717	rs138239490	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:30:70:0.400:2	./.	./.	0/1:18,15:30:33:0.455:2
chr2	218762616	rs41272679	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,89:30:194:0.459:2	./.	./.	./.	./.	0/1:93,63:30:156:0.404:2	./.
chr2	218940259	rs7423696	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,22:29:34:0.647:2	0/1:31,23:30:54:0.426:2	./.	./.	0/1:0,52:32:52:1.00:2	./.	./.
chr2	218940418	rs4674246	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,48:31:105:0.457:2	0/1:41,25:32:66:0.379:2	./.	./.	./.	0/1:89,91:31:180:0.506:2	./.	./.	./.	./.	./.
chr2	218940430	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.
chr2	218947964	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,11:16:135:0.081:2	./.	./.	./.
chr2	218999695	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:29:191:0.026:2	./.	./.	./.	./.
chr2	218999698	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.
chr2	218999794	rs200819332	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,5:30:182:0.027:2	./.	./.	./.	./.	./.	./.
chr2	218999917	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.
chr2	219000001	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.
chr2	219000002	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.
chr2	219000292	rs11574750	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:31:94:0.436:2	./.	./.	./.	./.	./.
chr2	219000310	rs2230054	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,38:31:76:0.500:2	0/1:13,12:32:25:0.480:2	0/1:0,7:30:7:1.00:2	0/1:28,32:32:60:0.533:2	0/1:39,43:31:82:0.524:2	0/1:44,41:31:85:0.482:2	0/1:44,28:31:72:0.389:2	0/1:2,76:31:78:0.974:2	./.	0/1:29,41:31:70:0.586:2	0/1:22,25:32:47:0.532:2
chr2	219000378	rs201881186	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,3:35:74:0.041:2	./.
chr2	219000734	rs1126579	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,40:33:113:0.357:2	0/1:29,31:33:61:0.517:2	0/1:0,15:32:15:1.00:2	0/1:84,86:32:171:0.506:2	0/1:91,68:32:159:0.428:2	0/1:0,119:32:119:1.00:2	0/1:103,46:33:149:0.309:2	0/1:0,136:33:136:1.00:2	./.	0/1:86,55:32:141:0.390:2	0/1:69,73:33:142:0.514:2
chr2	219000962	rs17844765	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:31:78:0.532:2	./.	./.	./.	./.	./.
chr2	219000966	rs1126580	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,20:28:44:0.455:2	0/1:10,5:31:15:0.333:2	0/1:0,10:29:10:1.00:2	0/1:28,41:30:69:0.594:2	0/1:18,30:29:48:0.625:2	0/1:41,30:29:71:0.423:2	0/1:31,20:30:51:0.392:2	0/1:0,57:31:57:1.00:2	./.	0/1:32,22:31:54:0.407:2	0/1:48,35:31:83:0.422:2
chr2	219000992	rs11384701	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,8:20:24:0.333:2	./.	./.	./.	0/1:10,5:19:15:0.333:2	./.	./.	./.	./.	./.	./.
chr2	219001018	rs200622623	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219001756	rs201967136	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,52:33:90:0.578:2	./.	./.	./.	./.	./.	./.
chr2	219029108	rs2234671	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.	./.	./.	0/1:93,69:31:162:0.426:2	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2
chr2	219029553	rs5021150	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.
chr2	219029554	rs5021151	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.
chr2	219029932	rs55808468	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:30:21:0.524:2	./.	./.
chr2	219103403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219128506	rs2292549	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,76:32:76:1.00:2	0/1:2,84:32:86:0.977:2	0/1:0,76:32:76:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,74:32:74:1.00:2
chr2	219128580	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.
chr2	219129252	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,40:30:76:0.526:2	0/1:24,15:31:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219140288	rs2292550	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:30:13:1.00:2	0/1:64,48:30:112:0.429:2	0/1:65,46:30:111:0.414:2	0/1:61,31:30:92:0.337:2	0/1:79,44:30:123:0.358:2	0/1:2,135:30:137:0.985:2	./.	0/1:38,27:31:65:0.415:2	0/1:42,44:31:86:0.512:2
chr2	219143229	rs2292551	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:40,31:30:71:0.437:2	0/1:50,37:31:87:0.425:2	0/1:39,30:30:69:0.435:2	0/1:35,42:30:77:0.545:2	0/1:0,96:31:96:1.00:2	./.	0/1:42,28:31:70:0.400:2	0/1:44,23:31:67:0.343:2
chr2	219144089	rs12987180	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:29,21:32:50:0.420:2	0/1:23,27:32:50:0.540:2	0/1:18,19:32:37:0.514:2	0/1:19,34:32:53:0.642:2	0/1:2,47:31:49:0.959:2	./.	0/1:15,12:32:27:0.444:2	0/1:15,16:32:31:0.516:2
chr2	219144815	rs2045435	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:63:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,171:30:171:1.00:2	0/1:0,109:30:109:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,72:29:72:1.00:2
chr2	219146797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,52:31:105:0.495:2	./.	./.	./.	./.	./.
chr2	219146803	rs2292553	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,52:32:53:0.981:2	0/1:0,33:32:33:1.00:2	./.	0/1:50,38:33:88:0.432:2	0/1:38,55:32:93:0.591:2	0/1:57,50:31:107:0.467:2	0/1:15,28:32:43:0.651:2	./.	0/1:0,80:32:80:1.00:2	0/1:28,40:31:68:0.588:2	0/1:39,43:30:82:0.524:2
chr2	219204600	rs202190131	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:15:21:0.476:2	./.	./.	./.	0/1:17,8:14:25:0.320:2	./.	./.	./.
chr2	219221846	rs4324314	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	0/1:32,23:33:55:0.418:2	0/1:43,40:32:83:0.482:2	0/1:47,40:33:87:0.460:2	0/1:22,26:33:48:0.542:2	./.	0/1:13,30:34:43:0.698:2
chr2	219231807	rs3845833	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,62:31:63:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,61:32:61:1.00:2
chr2	219249013	rs2276631	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:30:7:0.571:2	0/1:47,34:31:81:0.420:2	0/1:33,41:31:74:0.554:2	0/1:21,31:31:52:0.596:2	./.	0/1:33,26:31:59:0.441:2	0/1:2,73:32:75:0.973:2	./.	0/1:47,48:31:96:0.505:2
chr2	219249077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.
chr2	219252630	rs17221959	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:31:96:0.463:2	0/1:36,19:30:55:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219254622	rs2695342	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:28:118:1.00:2	0/1:0,72:27:72:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,174:28:174:1.00:2	0/1:0,169:27:169:1.00:2	0/1:2,154:28:156:0.987:2	0/1:0,197:28:197:1.00:2	0/1:0,194:28:194:1.00:2	0/1:0,174:29:174:1.00:2	0/1:0,145:28:145:1.00:2	0/1:0,130:27:130:1.00:2
chr2	219266423	rs2227251	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,21:31:43:0.488:2	0/1:25,16:31:41:0.390:2	./.	0/1:60,4:33:64:0.063:2	0/1:36,25:32:61:0.410:2	./.	./.	./.	0/1:35,23:32:58:0.397:2	./.	0/1:20,20:32:41:0.500:2
chr2	219267781	rs2227255	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,10:31:18:0.556:2	0/1:76,90:30:166:0.542:2	0/1:95,100:30:195:0.513:2	0/1:0,195:30:195:1.00:2	0/1:4,192:31:196:0.980:2	0/1:0,195:30:195:1.00:2	0/1:79,82:31:161:0.509:2	0/1:1,114:32:115:0.991:2	0/1:78,79:31:157:0.503:2
chr2	219288523	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2
chr2	219294599	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr2	219319657	rs6436058	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,63:30:63:1.00:2
chr2	219433715	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,10:17:178:0.056:2	./.	./.	0/1:153,20:12:174:0.116:2	./.	./.	./.
chr2	219492924	rs612874	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:28:12:0.250:2	0/1:0,85:28:85:1.00:2	0/1:27,34:28:61:0.557:2	0/1:60,51:28:111:0.459:2	0/1:0,94:29:94:1.00:2	0/1:56,57:29:113:0.504:2	0/1:0,118:29:118:1.00:2	0/1:0,82:29:82:1.00:2	0/1:50,39:28:89:0.438:2
chr2	219503113	rs1803383	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:32:178:0.028:2	./.	./.	./.
chr2	219507166	rs114603798	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,16:27:28:0.571:2	./.
chr2	219508372	rs3770213	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,39:32:40:0.975:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:18,17:31:35:0.486:2	0/1:26,13:31:39:0.333:2	./.	0/1:27,23:32:50:0.460:2	./.	./.	0/1:23,31:32:54:0.574:2
chr2	219508988	rs3770214	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:1,137:32:138:0.993:2	0/1:65,52:32:117:0.444:2	0/1:85,71:32:156:0.455:2	0/1:1,98:32:99:0.990:2	0/1:70,71:32:141:0.504:2	0/1:2,161:33:163:0.988:2	0/1:0,114:32:114:1.00:2	0/1:118,62:32:180:0.344:2
chr2	219509608	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,11:17:162:0.068:2	0/1:138,10:18:148:0.068:2	./.	./.	./.	./.	./.	./.
chr2	219509618	rs2230115	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:28:19:0.421:2	0/1:0,153:29:153:1.00:2	0/1:81,61:30:143:0.430:2	0/1:67,83:29:151:0.553:2	0/1:1,130:30:133:0.992:2	0/1:73,67:30:140:0.479:2	0/1:0,147:30:148:1.00:2	0/1:1,135:30:136:0.993:2	0/1:59,56:30:115:0.487:2
chr2	219513782	rs4674322	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,27:28:51:0.529:2	0/1:29,19:29:48:0.396:2	./.	0/1:13,35:30:48:0.729:2	./.	./.	0/1:31,19:30:50:0.380:2
chr2	219521110	rs61733649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,35:32:56:0.625:2
chr2	219540127	rs148800637	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219553423	rs45586733	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,66:29:141:0.468:2	0/1:50,46:28:96:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219555262	rs1344642	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,37:33:38:0.974:2	0/1:0,25:33:25:1.00:2	./.	./.	0/1:33,22:33:55:0.400:2	0/1:14,21:32:35:0.600:2	./.	0/1:31,21:33:52:0.404:2	./.	./.	0/1:27,31:32:58:0.534:2
chr2	219558006	rs145980892	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,71:30:160:0.444:2	./.	./.
chr2	219562675	rs1863704	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,92:32:93:0.989:2	0/1:0,48:31:48:1.00:2	0/1:5,11:32:16:0.688:2	./.	0/1:65,49:31:114:0.430:2	0/1:94,57:31:151:0.377:2	./.	0/1:83,61:31:144:0.424:2	./.	./.	0/1:72,74:32:146:0.507:2
chr2	219562683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2
chr2	219602499	rs3731877	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,54:33:54:1.00:2	0/1:1,40:32:41:0.976:2	0/1:3,5:31:8:0.625:2	./.	0/1:30,26:32:56:0.464:2	0/1:38,29:31:67:0.433:2	./.	0/1:46,44:31:90:0.489:2	./.	./.	0/1:43,48:33:91:0.527:2
chr2	219602819	rs3731876	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:32:30:1.00:2	0/1:0,22:32:22:1.00:2	./.	./.	0/1:12,13:31:25:0.520:2	0/1:15,14:32:29:0.483:2	./.	0/1:18,13:32:31:0.419:2	./.	./.	0/1:15,19:32:34:0.559:2
chr2	219610433	rs586194	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,68:32:68:1.00:2	0/1:0,42:32:42:1.00:2	0/1:3,3:33:6:0.500:2	./.	0/1:40,31:32:71:0.437:2	0/1:46,46:32:92:0.500:2	./.	0/1:63,50:32:113:0.442:2	./.	./.	0/1:48,43:32:91:0.473:2
chr2	219617915	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:29:81:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr2	219678877	rs41272687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,42:32:81:0.519:2	./.	./.	./.	./.	./.	./.
chr2	219691801	rs33985460	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	./.	0/1:55,50:32:105:0.476:2	./.
chr2	219736472	rs13417214	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,66:31:152:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr2	219736532	rs143354443	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,81:32:179:0.453:2	./.	./.	./.
chr2	219826572	rs142258539	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219878668	rs148224341	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,62:32:125:0.496:2	./.	./.	./.	./.
chr2	219883755	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,19:12:135:0.141:2	./.	./.	./.	./.	./.	./.	./.
chr2	219883763	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:90,13:19:103:0.126:2	./.	./.	./.	./.	./.	0/1:123,18:13:141:0.128:2	./.	0/1:166,14:14:180:0.078:2	0/1:101,19:13:120:0.158:2	0/1:126,21:13:147:0.143:2
chr2	219884332	rs145661891	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,90:32:174:0.517:2	./.	./.	./.	./.	./.
chr2	219892233	rs61749573	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,22:29:50:0.440:2	0/1:14,16:31:30:0.533:2	0/1:0,5:30:5:1.00:2	0/1:0,42:30:42:1.00:2	0/1:41,28:30:69:0.406:2	./.	./.	0/1:27,22:30:49:0.449:2	./.	./.	./.
chr2	219893096	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,12:16:117:0.103:2	0/1:113,13:15:127:0.103:2	0/1:112,17:20:129:0.132:2	0/1:121,17:17:138:0.123:2	0/1:120,11:20:131:0.084:2	0/1:123,16:16:139:0.115:2	./.	0/1:79,11:14:91:0.122:2
chr2	219895444	rs377478314	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:34:148:0.027:2	./.	./.
chr2	219895548	rs56411706	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:32:49:0.367:2	./.	./.	0/1:21,22:33:44:0.512:2
chr2	219895883	rs150728769	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,59:31:84:0.702:2	./.	./.	./.
chr2	219900068	rs17852959	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	./.	./.	0/1:38,24:32:62:0.387:2
chr2	219903258	rs6736922	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,44:32:92:0.478:2	0/1:40,23:32:63:0.365:2	0/1:0,15:32:15:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,95:31:95:1.00:2	./.	0/1:95,81:33:176:0.460:2	0/1:2,133:33:135:0.985:2	0/1:0,104:34:104:1.00:2	./.	0/1:50,47:32:98:0.485:2
chr2	219903723	rs4674354	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,31:31:68:0.456:2	0/1:21,19:30:40:0.475:2	0/1:0,8:30:8:1.00:2	0/1:1,51:30:52:0.981:2	0/1:0,18:29:18:1.00:2	./.	0/1:17,17:29:34:0.500:2	0/1:1,51:30:52:0.981:2	0/1:0,70:30:70:1.00:2	./.	0/1:44,29:29:73:0.397:2
chr2	219905247	rs3736403	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,78:33:192:0.406:2	./.	./.	0/1:108,84:33:192:0.438:2
chr2	219905296	rs72966102	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,7:29:26:0.269:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219920037	rs394452	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,33:30:76:0.434:2	0/1:36,23:31:59:0.390:2	0/1:0,10:33:10:1.00:2	0/1:1,79:32:80:0.988:2	0/1:0,100:31:100:1.00:2	./.	0/1:0,81:32:81:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,60:32:60:1.00:2	0/1:50,24:32:74:0.324:2	0/1:48,42:32:91:0.467:2
chr2	219920412	rs3731881	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,23:33:49:0.469:2	0/1:22,9:33:31:0.290:2	0/1:0,20:33:20:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,107:32:107:1.00:2	./.	0/1:49,39:33:89:0.443:2	0/1:59,55:33:114:0.482:2	0/1:0,83:33:83:1.00:2	./.	./.
chr2	219920565	rs3731878	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	0/1:6,5:31:11:0.455:2
chr2	219941063	rs897477	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,18:30:36:0.500:2	0/1:11,13:32:24:0.542:2	0/1:0,5:30:5:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,36:30:36:1.00:2	./.	0/1:26,17:31:43:0.395:2	0/1:0,61:30:61:1.00:2	0/1:0,38:31:38:1.00:2	./.	0/1:27,30:31:57:0.526:2
chr2	220028245	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.	./.	./.
chr2	220033830	rs3795986	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,59:31:59:1.00:2	./.	0/1:43,32:33:75:0.427:2	./.	0/1:33,41:34:74:0.554:2	0/1:36,26:32:62:0.419:2	./.
chr2	220037393	rs4674361	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,49:32:49:1.00:2
chr2	220037444	rs17655123	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,118:31:119:0.992:2	./.	./.	0/1:22,39:33:61:0.639:2
chr2	220037608	rs151183191	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	./.	./.
chr2	220037666	rs1127102	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,6:34:6:1.00:2	0/1:1,37:32:38:0.974:2	0/1:0,56:32:56:1.00:2	./.	./.	./.	0/1:32,10:32:42:0.238:2	0/1:13,15:33:28:0.536:2	./.
chr2	220037756	rs1043160	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,45:32:45:1.00:2	./.	./.	./.	0/1:20,9:34:29:0.310:2	0/1:12,4:34:16:0.250:2	./.
chr2	220040330	rs1127101	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:29:155:1.00:2	0/1:0,68:28:68:1.00:2	0/1:0,15:29:15:1.00:2	0/1:1,188:30:189:0.995:2	0/1:4,151:30:155:0.974:2	./.	./.	./.	0/1:115,73:30:188:0.388:2	0/1:93,93:29:186:0.500:2	./.
chr2	220045454	rs2293072	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,76:32:172:0.444:2	./.	./.	0/1:104,79:31:183:0.432:2	./.
chr2	220045902	rs2293073	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:32:53:0.528:2	./.	0/1:40,33:32:73:0.452:2
chr2	220046431	rs144808050	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,30:31:112:0.268:2	./.	./.	./.	./.	./.	./.
chr2	220046840	rs3210652	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,26:31:73:0.356:2	0/1:6,75:31:81:0.926:2	./.	./.	0/1:35,39:31:74:0.527:2
chr2	220046975	rs3731900	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:31:30:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:30:9:1.00:2	0/1:1,60:30:61:0.984:2	0/1:0,57:30:57:1.00:2	./.	./.	./.	0/1:29,31:31:60:0.517:2	0/1:20,22:30:42:0.524:2	./.
chr2	220072431	rs61750009	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,32:31:68:0.478:2	0/1:9,24:30:33:0.727:2	./.	./.	./.	./.	./.	./.	0/1:47,36:30:83:0.434:2	./.	./.
chr2	220073376	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:28:27:0.593:2	./.	./.	./.	./.
chr2	220078652	rs147445258	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,21:32:48:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr2	220079130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.
chr2	220080839	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,6:21:47:0.128:2	./.	./.
chr2	220081416	rs57467915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,57:31:94:0.606:2	./.	./.	./.	./.	./.	./.	./.
chr2	220083279	rs1109866	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,112:31:112:1.00:2	0/1:3,75:30:79:0.962:2	0/1:0,92:30:92:1.00:2	./.	0/1:1,102:30:103:0.990:2	0/1:0,88:31:88:1.00:2	0/1:0,72:31:72:1.00:2	0/1:21,30:31:51:0.588:2
chr2	220085845	rs2276633	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,57:28:57:1.00:2	0/1:2,42:28:44:0.955:2	0/1:0,81:30:81:1.00:2	0/1:1,58:31:59:0.983:2	0/1:0,53:29:53:1.00:2	0/1:0,58:29:58:1.00:2
chr2	220087088	rs146429396	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,22:29:37:0.595:2	./.	./.	./.	./.	./.	./.
chr2	220087441	rs2276635	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,123:32:125:0.984:2	./.	./.	./.	./.
chr2	220100258	rs189875478	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,46:31:88:0.523:2	./.	./.	./.	0/1:34,30:32:64:0.469:2	./.
chr2	220100787	rs2293079	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,41:30:44:0.932:2	./.	./.	0/1:34,23:31:57:0.404:2
chr2	220103033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.
chr2	220108300	rs11552796	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,145:33:148:0.980:2	./.	./.	./.	./.
chr2	220111285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.
chr2	220113242	rs7601549	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,98:32:98:1.00:2	0/1:1,113:32:114:0.991:2	0/1:0,89:33:89:1.00:2	0/1:1,67:33:68:0.985:2	0/1:0,82:32:82:1.00:2
chr2	220115406	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.
chr2	220115422	rs147351423	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,6:32:199:0.030:2	./.	./.	./.
chr2	220115780	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,4:30:41:0.098:2	0/1:185,4:32:189:0.021:2	0/1:186,7:31:193:0.036:2	0/1:178,10:32:188:0.053:2	0/1:173,9:32:182:0.049:2	0/1:186,8:30:194:0.041:2	0/1:175,9:31:184:0.049:2	0/1:167,15:32:182:0.082:2	./.
chr2	220116412	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.
chr2	220117458	rs1024131	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,29:29:30:0.967:2	./.	./.	./.	./.
chr2	220118531	rs939574	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,118:32:118:1.00:2	0/1:1,106:31:107:0.991:2	0/1:0,152:31:152:1.00:2	./.	0/1:2,108:31:110:0.982:2	0/1:0,106:32:106:1.00:2	0/1:0,88:31:88:1.00:2	0/1:63,36:32:100:0.364:2
chr2	220149449	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,8:22:164:0.049:2	./.	./.	./.	./.	./.	./.
chr2	220161222	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	220162015	rs17847406	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:31:63:0.492:2	./.	./.	0/1:19,19:32:38:0.500:2
chr2	220162619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2	./.
chr2	220172576	rs7591986	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,40:32:98:0.408:2	./.	./.	0/1:53,40:33:93:0.430:2
chr2	220197321	rs2385405	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,48:30:48:1.00:2	0/1:0,77:31:77:1.00:2	./.	./.	0/1:0,47:30:47:1.00:2
chr2	220197388	rs2385404	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,60:28:60:1.00:2	0/1:0,84:29:84:1.00:2	./.	./.	0/1:0,36:29:36:1.00:2
chr2	220197424	rs2385403	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	0/1:0,29:30:30:1.00:2	0/1:22,25:30:47:0.532:2	./.	./.	0/1:11,5:29:17:0.313:2
chr2	220250147	rs17856013	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,149:29:149:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,153:29:154:1.00:2	0/1:0,174:29:174:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,84:29:85:1.00:2
chr2	220250232	rs115897075	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,56:28:127:0.441:2	./.	./.	./.	./.	./.	./.
chr2	220283259	rs1318299	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,5:28:5:1.00:2	./.	0/1:1,4:28:5:0.800:2	./.	0/1:0,3:26:3:1.00:2	./.
chr2	220283277	rs2017800	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,4:33:4:1.00:2	0/1:1,9:32:10:0.900:2	0/1:0,2:34:2:1.00:2	0/1:0,7:33:7:1.00:2	./.
chr2	220283536	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:34:123:0.033:2	./.	./.
chr2	220283592	rs111828114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,27:27:64:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr2	220284876	rs41272699	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,46:31:129:0.357:2	./.	./.	./.	./.
chr2	220285002	rs75882680	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:27:76:0.513:2
chr2	220285309	rs1058261	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,38:30:86:0.447:2	0/1:34,28:31:62:0.452:2	./.	./.	0/1:91,92:29:183:0.503:2	./.	0/1:94,64:30:158:0.405:2	0/1:2,141:30:143:0.986:2	./.	./.	0/1:63,50:31:113:0.442:2
chr2	220285666	rs12920	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,19:33:31:0.613:2	0/1:16,11:32:27:0.407:2	./.	./.	0/1:38,32:31:70:0.457:2	./.	0/1:52,35:33:87:0.402:2	0/1:1,62:33:63:0.984:2	./.	./.	0/1:18,22:32:40:0.550:2
chr2	220286142	rs1058284	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,19:30:53:0.358:2	0/1:17,11:31:28:0.393:2	./.	./.	0/1:74,49:31:123:0.398:2	./.	0/1:59,65:31:124:0.524:2	0/1:1,99:31:100:0.990:2	./.	./.	0/1:36,24:30:60:0.400:2
chr2	220309685	rs55821435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	220315970	rs10932806	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,20:31:40:0.500:2	0/1:15,12:32:27:0.444:2	./.	0/1:41,19:30:60:0.317:2	0/1:29,33:30:62:0.532:2	0/1:32,13:31:45:0.289:2	0/1:48,21:32:69:0.304:2	0/1:40,30:30:70:0.429:2	0/1:24,22:31:46:0.478:2	0/1:0,35:32:35:1.00:2	0/1:24,22:32:46:0.478:2
chr2	220330804	rs1567487	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:24:24:0.542:2	0/1:18,7:27:25:0.280:2	0/1:1,3:26:4:0.750:2	0/1:46,31:23:77:0.403:2	0/1:59,32:23:91:0.352:2	0/1:34,25:26:59:0.424:2	0/1:43,20:23:63:0.317:2	0/1:56,33:25:89:0.371:2	0/1:40,26:24:66:0.394:2	0/1:0,33:25:33:1.00:2	0/1:21,10:22:31:0.323:2
chr2	220333950	rs10167209	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,134:30:134:1.00:2	0/1:1,119:29:120:0.992:2	0/1:0,122:30:122:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,90:30:90:1.00:2	0/1:1,64:30:65:0.985:2	0/1:0,58:30:58:1.00:2
chr2	220342004	rs45519033	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,20:31:37:0.541:2	0/1:8,7:31:15:0.467:2	./.	0/1:34,24:30:58:0.414:2	./.	./.	./.	./.	./.	0/1:18,21:32:39:0.538:2	./.
chr2	220342509	rs200886963	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,7:19:69:0.101:2	./.	./.
chr2	220348751	rs10755037	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:31:26:0.538:2	0/1:22,17:31:39:0.436:2	0/1:17,12:32:29:0.414:2	0/1:15,11:30:26:0.423:2	0/1:0,25:32:25:1.00:2	0/1:15,10:33:25:0.400:2	0/1:9,10:30:19:0.526:2	0/1:11,8:32:19:0.421:2
chr2	220353013	rs875098	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,11:31:37:0.297:2	0/1:17,13:29:30:0.433:2	0/1:16,12:28:29:0.429:2	0/1:19,20:30:39:0.513:2	0/1:3,54:30:57:0.947:2	0/1:16,18:32:34:0.529:2	0/1:15,21:32:36:0.583:2	0/1:13,17:28:30:0.567:2
chr2	220353532	rs13026308	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,12:30:14:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	220354108	rs55760516	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,7:33:14:0.500:2	0/1:5,3:33:8:0.375:2	./.	0/1:1,16:31:17:0.941:2	0/1:4,7:31:11:0.636:2	0/1:3,8:32:11:0.727:2	0/1:5,4:33:9:0.444:2	0/1:2,10:31:12:0.833:2	0/1:6,6:31:12:0.500:2	0/1:0,7:33:7:1.00:2	0/1:8,7:29:16:0.467:2
chr2	220354177	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:23:25:0.167:2	./.	./.	./.	./.	./.	./.
chr2	220354365	rs56132883	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:30:33:0.394:2	0/1:12,12:30:24:0.500:2	0/1:9,24:30:33:0.727:2	0/1:11,16:31:27:0.593:2	0/1:0,21:31:21:1.00:2	0/1:14,15:33:29:0.517:2	0/1:18,16:31:34:0.471:2	0/1:15,5:29:20:0.250:2
chr2	220354542	rs55969678	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,21:32:36:0.583:2	0/1:12,17:32:29:0.586:2	./.	0/1:40,26:31:66:0.394:2	./.	./.	./.	./.	./.	0/1:24,27:32:51:0.529:2	./.
chr2	220355529	rs12464085	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,31:30:66:0.470:2	0/1:24,17:30:41:0.415:2	./.	0/1:2,85:29:88:0.977:2	0/1:75,39:28:114:0.342:2	0/1:61,30:28:92:0.330:2	0/1:72,55:29:127:0.433:2	0/1:0,121:28:121:1.00:2	0/1:61,44:29:105:0.419:2	0/1:0,58:29:58:1.00:2	0/1:47,45:28:92:0.489:2
chr2	220356520	rs12473286	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,21:32:53:0.396:2	0/1:19,20:32:39:0.513:2	0/1:24,13:33:37:0.351:2	0/1:13,28:33:41:0.683:2	0/1:0,47:32:47:1.00:2	0/1:10,20:35:30:0.667:2	0/1:19,12:34:31:0.387:2	0/1:8,11:33:19:0.579:2
chr2	220362557	rs12474050	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,26:31:57:0.456:2	0/1:27,20:31:47:0.426:2	./.	0/1:0,84:30:84:1.00:2	0/1:30,31:30:61:0.508:2	0/1:47,28:29:75:0.373:2	0/1:33,24:31:57:0.421:2	0/1:1,78:31:79:0.987:2	0/1:44,28:32:72:0.389:2	0/1:1,49:31:50:0.980:2	0/1:23,18:31:41:0.439:2
chr2	220362899	rs2029251	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,22:32:22:1.00:2
chr2	220371035	rs1046474	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,47:30:97:0.485:2	./.	0/1:67,62:30:129:0.481:2	./.	./.	0/1:27,29:29:56:0.518:2
chr2	220379560	rs3731909	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:32:15:0.467:2	0/1:5,6:30:11:0.545:2	./.	./.	0/1:12,9:31:21:0.429:2	0/1:8,10:31:18:0.556:2	0/1:11,8:33:19:0.421:2	0/1:8,9:25:17:0.529:2	0/1:12,12:32:24:0.500:2	./.	0/1:16,8:23:24:0.333:2
chr2	220399951	rs2276643	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,14:29:44:0.318:2	0/1:15,5:29:20:0.250:2	0/1:0,8:29:8:1.00:2	0/1:18,20:30:38:0.526:2	./.	./.	./.	./.	./.	0/1:14,11:29:25:0.440:2	./.
chr2	220402665	rs6436153	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,9:33:22:0.409:2	0/1:7,7:33:14:0.500:2	./.	0/1:8,14:33:22:0.636:2	./.	./.	./.	./.	./.	0/1:12,10:33:22:0.455:2	./.
chr2	220402671	rs11689281	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,13:32:27:0.481:2	0/1:8,7:32:15:0.467:2	./.	0/1:15,11:31:26:0.423:2	0/1:1,14:31:15:0.933:2	0/1:0,27:31:27:1.00:2	0/1:13,7:33:20:0.350:2	0/1:0,20:32:20:1.00:2	0/1:0,17:33:17:1.00:2	0/1:11,14:33:25:0.560:2	0/1:0,25:32:25:1.00:2
chr2	220402680	rs11695248	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,14:30:29:0.483:2	0/1:8,8:30:16:0.500:2	./.	0/1:16,14:30:30:0.467:2	0/1:0,18:29:18:1.00:2	0/1:0,30:28:30:1.00:2	0/1:13,12:30:25:0.480:2	0/1:1,23:30:24:0.958:2	0/1:0,20:30:20:1.00:2	0/1:9,15:28:24:0.625:2	0/1:0,29:30:29:1.00:2
chr2	220404381	rs1976616	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:31:97:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,83:31:83:1.00:2	0/1:1,74:31:75:0.987:2
chr2	220404648	rs1043833	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,59:29:124:0.476:2	0/1:42,26:31:68:0.382:2	0/1:0,31:30:31:1.00:2	0/1:95,93:29:188:0.495:2	./.	./.	0/1:84,77:29:161:0.478:2	./.	./.	0/1:64,55:29:119:0.462:2	./.
chr2	220404726	rs1043832	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,37:31:64:0.578:2	0/1:20,13:31:33:0.394:2	0/1:0,23:31:23:1.00:2	0/1:37,30:30:67:0.448:2	./.	./.	0/1:16,23:31:39:0.590:2	./.	./.	0/1:23,30:31:53:0.566:2	./.
chr2	220404914	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.
chr2	220405230	rs6436154	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,19:31:30:0.633:2	0/1:6,13:30:19:0.684:2	0/1:0,7:30:7:1.00:2	0/1:17,26:31:43:0.605:2	./.	./.	0/1:7,16:31:23:0.696:2	./.	./.	0/1:13,8:31:21:0.381:2	./.
chr2	220405321	rs6436155	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:26:13:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,13:28:13:1.00:2
chr2	220406722	rs3731912	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,4:33:4:1.00:2	0/1:1,13:33:14:0.929:2	0/1:0,34:32:34:1.00:2	0/1:0,23:32:23:1.00:2	0/1:8,10:32:18:0.556:2	0/1:0,19:32:19:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,4:32:4:1.00:2
chr2	220412256	rs8179770	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,25:34:25:1.00:2	0/1:0,176:33:176:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,157:33:157:1.00:2	0/1:0,145:33:145:1.00:2	0/1:0,111:32:111:1.00:2
chr2	220412282	rs145979116	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,83:32:186:0.446:2	0/1:84,102:31:186:0.548:2	./.	./.	./.
chr2	220412657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.
chr2	220414016	rs6436156	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:30:86:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,131:31:131:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,119:31:119:1.00:2
chr2	220414019	rs13023533	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,28:30:93:0.301:2	0/1:14,29:29:43:0.674:2	0/1:2,11:29:13:0.846:2	0/1:61,41:30:102:0.402:2	./.	./.	0/1:61,52:30:113:0.460:2	./.	./.	0/1:38,29:29:67:0.433:2	./.
chr2	220417266	rs59332477	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.
chr2	220419236	rs10932813	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,158:31:158:1.00:2	0/1:0,164:30:164:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,151:30:151:1.00:2	0/1:0,177:30:177:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,86:30:86:1.00:2
chr2	220419339	rs10932814	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,154:29:154:1.00:2	0/1:0,149:28:149:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,154:28:154:1.00:2	0/1:0,152:28:152:1.00:2	0/1:0,117:30:117:1.00:2	0/1:2,105:29:107:0.981:2	0/1:0,76:28:76:1.00:2
chr2	220420785	rs3087971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,92:31:138:0.667:2	./.	./.	./.	./.
chr2	220420956	rs10932816	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:26:59:1.00:2	0/1:0,29:26:29:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,93:26:93:1.00:2	0/1:0,134:26:134:1.00:2	0/1:0,113:27:113:1.00:2	0/1:0,134:27:135:1.00:2	0/1:2,134:27:136:0.985:2	0/1:0,85:28:85:1.00:2	0/1:0,57:26:57:1.00:2	0/1:0,84:26:84:1.00:2
chr2	220420990	rs183329050	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:197:0.020:2	./.	./.	./.
chr2	220421417	rs1983210	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,155:31:156:0.994:2	0/1:0,83:32:83:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,189:32:189:1.00:2	0/1:1,174:32:175:0.994:2	0/1:0,166:32:166:1.00:2	0/1:105,79:32:184:0.429:2	0/1:4,166:32:170:0.976:2	0/1:0,162:33:163:1.00:2	0/1:2,179:32:181:0.989:2	0/1:2,140:31:142:0.986:2
chr2	220422605	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,4:21:16:0.250:2	./.	./.	./.	./.	./.	./.
chr2	220422774	rs2278201	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,29:25:68:0.426:2	0/1:22,16:29:38:0.421:2	0/1:0,9:27:9:1.00:2	0/1:40,51:26:91:0.560:2	./.	./.	0/1:46,28:26:74:0.378:2	./.	./.	0/1:44,33:27:78:0.429:2	./.
chr2	220423030	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.
chr2	220427154	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,18:32:20:0.900:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	220427193	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:30:159:0.031:2	./.	./.	./.	./.
chr2	220427347	rs10804275	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,31:31:51:0.608:2	./.	./.	./.	./.
chr2	220427395	rs3183099	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,18:29:27:0.667:2	./.	./.	./.	./.
chr2	220430203	rs1039898	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,8:27:8:1.00:2	./.	0/1:0,23:31:23:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,18:29:18:1.00:2	0/1:7,9:30:16:0.563:2
chr2	220431631	rs1043537	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,87:32:185:0.470:2	0/1:4,169:32:173:0.977:2	./.	./.	0/1:47,69:32:116:0.595:2
chr2	220431802	rs115194510	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,57:31:129:0.442:2	./.	./.	./.	./.	./.
chr2	220432014	rs61732787	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:31:181:0.448:2	0/1:4,112:31:116:0.966:2	./.	./.	0/1:41,39:30:80:0.488:2
chr2	220432499	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.
chr2	220435034	rs10180675	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,9:33:9:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,12:31:12:1.00:2	./.
chr2	220439678	rs12720063	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,11:32:37:0.297:2	./.	./.	./.	./.
chr2	220439916	rs12720062	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,61:31:127:0.484:2	./.	./.	./.	./.	./.
chr2	220462640	rs681747	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:30:59:0.983:2	0/1:0,45:31:45:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,89:30:89:1.00:2	0/1:1,108:30:109:0.991:2	0/1:0,70:31:70:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,69:28:69:1.00:2
chr2	220466199	rs620698	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:31:75:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,81:31:82:0.988:2	0/1:1,112:31:113:0.991:2	0/1:0,107:30:107:1.00:2	0/1:0,88:31:89:1.00:2	0/1:0,133:31:133:1.00:2	0/1:0,107:32:108:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,121:31:121:1.00:2
chr2	220473355	rs673951	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,77:31:160:0.481:2	0/1:55,42:32:97:0.433:2	./.	./.	./.	0/1:2,181:31:183:0.989:2	./.	./.	0/1:107,83:32:190:0.437:2	0/1:1,141:31:142:0.993:2	./.
chr2	220473929	rs35240018	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:31:93:0.430:2
chr2	220476443	rs627530	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:31:75:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,72:30:73:0.986:2	0/1:0,81:31:81:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,63:31:63:1.00:2
chr2	220479232	rs200702532	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr2	220479312	rs624773	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:32:119:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,187:31:187:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,183:32:184:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,144:32:144:1.00:2
chr2	220494118	rs597306	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:32:9:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,12:31:12:1.00:2
chr2	220500423	rs589767	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,39:34:39:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,43:31:43:1.00:2
chr2	220500426	rs639214	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:27:26:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,41:27:41:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,43:26:43:1.00:2
chr2	220502367	rs635311	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,30:33:59:0.508:2	0/1:18,20:32:38:0.526:2	0/1:0,5:32:5:1.00:2	0/1:27,28:32:55:0.509:2	0/1:0,60:33:60:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,60:32:60:1.00:2	0/1:43,35:32:78:0.449:2	0/1:0,52:33:52:1.00:2	0/1:0,38:32:38:1.00:2	0/1:49,30:32:79:0.380:2
chr2	220504366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:28:73:0.055:2	./.	./.	./.	./.
chr2	220505265	rs684428	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,48:32:113:0.425:2	0/1:28,33:32:61:0.541:2	0/1:0,27:33:27:1.00:2	0/1:84,80:32:164:0.488:2	0/1:1,156:32:157:0.994:2	0/1:1,137:32:138:0.993:2	0/1:0,142:33:142:1.00:2	0/1:84,83:32:167:0.497:2	0/1:0,150:33:152:1.00:2	0/1:1,95:32:96:0.990:2	0/1:0,109:32:109:1.00:2
chr2	222290829	rs35860178	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,70:32:182:0.385:2	0/1:126,63:32:189:0.333:2	./.	./.
chr2	222322643	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2
chr2	222367238	rs56263717	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,25:31:44:0.568:2	0/1:15,18:30:33:0.545:2	./.	./.	./.	./.	0/1:44,36:30:80:0.450:2	./.	./.	./.	./.
chr2	223161889	rs12623857	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,9:29:9:1.00:2	0/1:1,71:29:72:0.986:2	0/1:75,42:27:117:0.359:2	0/1:0,91:29:91:1.00:2	0/1:1,94:27:95:0.989:2	0/1:0,83:28:84:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,52:25:52:1.00:2
chr2	223169150	rs10210219	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,35:28:77:0.455:2	./.	./.	0/1:32,43:28:75:0.573:2	0/1:57,32:29:89:0.360:2	./.	./.	./.
chr2	223169551	rs78245860	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,19:30:39:0.487:2	./.	./.	./.	./.	./.	./.
chr2	223389692	rs111981491	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,62:32:181:0.343:2	./.	./.	./.	0/1:94,95:33:189:0.503:2	./.	./.	./.
chr2	223423362	rs4674664	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,180:29:180:1.00:2	0/1:0,148:28:149:1.00:2	0/1:0,34:30:34:1.00:2	0/1:120,73:30:193:0.378:2	0/1:0,188:29:188:1.00:2	0/1:2,184:30:187:0.989:2	0/1:1,184:30:185:0.995:2	0/1:0,185:29:185:1.00:2	0/1:1,185:30:186:0.995:2	0/1:1,185:29:186:0.995:2	0/1:0,185:29:185:1.00:2
chr2	223436607	rs7185	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:30:136:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,33:30:33:1.00:2	0/1:106,83:31:189:0.439:2	0/1:2,95:30:97:0.979:2	0/1:0,189:30:189:1.00:2	0/1:88,47:30:135:0.348:2	0/1:0,166:30:166:1.00:2	0/1:2,188:31:190:0.989:2	0/1:0,147:31:147:1.00:2	0/1:0,167:31:167:1.00:2
chr2	223489143	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.	./.
chr2	223559089	rs1868024	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:33:8:1.00:2	0/1:61,58:33:119:0.487:2	0/1:55,29:31:84:0.345:2	0/1:63,44:31:107:0.411:2	0/1:26,27:32:53:0.509:2	./.	./.	0/1:48,49:33:97:0.505:2	./.
chr2	223783841	rs13000358	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,73:31:137:0.533:2	./.	./.	./.	./.	./.	0/1:50,43:31:93:0.462:2	./.
chr2	223785740	rs6756323	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,57:30:111:0.514:2	0/1:40,44:29:84:0.524:2	./.	./.	0/1:57,37:29:94:0.394:2	./.	0/1:66,46:29:112:0.411:2	0/1:74,51:28:125:0.408:2	0/1:71,69:30:140:0.493:2	./.	0/1:83,84:29:167:0.503:2
chr2	223789254	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.
chr2	223917617	rs12720447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:32:24:0.417:2
chr2	223917629	rs3795886	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,17:30:33:0.515:2	0/1:26,15:29:41:0.366:2	./.	0/1:0,65:28:65:1.00:2	0/1:0,54:29:54:1.00:2	./.	0/1:19,37:28:56:0.661:2	0/1:42,40:28:82:0.488:2	0/1:1,73:28:74:0.986:2	0/1:0,56:28:56:1.00:2	0/1:23,21:30:44:0.477:2
chr2	223917645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr2	223917812	rs10201907	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:0,27:25:27:1.00:2	0/1:5,5:29:10:0.500:2	0/1:0,34:27:34:1.00:2	0/1:0,31:27:31:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,45:27:45:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,30:26:30:1.00:2
chr2	223917983	rs12621643	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,14:32:26:0.538:2	0/1:11,16:32:27:0.593:2	./.	0/1:2,41:32:43:0.953:2	0/1:1,60:32:61:0.984:2	./.	0/1:25,34:33:59:0.576:2	0/1:47,20:32:67:0.299:2	0/1:0,40:33:40:1.00:2	0/1:0,28:33:28:1.00:2	0/1:33,18:33:51:0.353:2
chr2	223917997	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.
chr2	223918019	rs17221840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:31:51:0.373:2	./.	./.	./.	./.	./.
chr2	223918080	rs10189762	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,29:29:29:1.00:2	./.	0/1:0,39:31:39:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,26:29:27:1.00:2
chr2	223918363	rs3795884	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,38:33:38:1.00:2	0/1:6,6:33:12:0.500:2	0/1:0,94:32:94:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,66:34:66:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,81:33:81:1.00:2
chr2	223920253	rs41311847	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:33:63:0.349:2
chr2	223920323	rs41311849	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:34:13:0.385:2
chr2	224462310	rs36043001	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.	./.
chr2	224463054	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:28:70:0.486:2	0/1:24,19:28:43:0.442:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	224640647	rs373837062	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,72:32:168:0.429:2
chr2	224642579	rs116107386	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:33:39:0.487:2	./.	./.	./.	0/1:31,21:33:52:0.404:2	./.	./.	./.
chr2	224743373	rs571111	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,36:31:59:0.610:2	0/1:13,19:32:32:0.594:2	0/1:0,9:30:9:1.00:2	0/1:40,32:33:72:0.444:2	0/1:42,27:31:69:0.391:2	0/1:30,35:32:65:0.538:2	0/1:49,45:32:94:0.479:2	0/1:0,78:32:78:1.00:2	0/1:1,79:33:80:0.988:2	0/1:40,30:32:70:0.429:2	0/1:38,47:33:85:0.553:2
chr2	224770710	rs139858004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:30:22:0.500:2	./.	./.	./.	./.	./.
chr2	224824617	rs11546405	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,71:33:151:0.470:2	./.	./.	./.	0/1:55,59:32:114:0.518:2	./.	./.	./.
chr2	224856650	rs6712954	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,51:32:106:0.481:2	0/1:28,36:32:64:0.563:2	./.	./.	./.	./.	./.	./.	0/1:67,76:33:143:0.531:2	0/1:50,75:32:125:0.600:2	0/1:70,70:32:140:0.500:2
chr2	224862842	rs12457	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,70:28:72:0.972:2	0/1:1,45:28:46:0.978:2	0/1:6,4:28:10:0.400:2	0/1:49,45:28:94:0.479:2	0/1:40,34:27:74:0.459:2	./.	./.	0/1:51,42:29:93:0.452:2	0/1:42,34:29:76:0.447:2	0/1:31,31:29:62:0.500:2	0/1:67,28:27:95:0.295:2
chr2	225244352	rs61732371	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:43,54:32:97:0.557:2	0/1:37,19:31:56:0.339:2	./.	./.	./.	./.	0/1:29,26:31:55:0.473:2	./.	0/1:34,31:32:65:0.477:2	./.	./.
chr2	225244888	rs3738954	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:31:31:0.516:2	0/1:28,10:29:38:0.263:2	./.	./.	./.	0/1:25,20:33:45:0.444:2
chr2	225244923	rs3738953	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:30:29:0.517:2	0/1:16,12:32:28:0.429:2	./.	./.	./.	0/1:27,14:33:41:0.341:2
chr2	225346646	rs2070127	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	0/1:33,24:32:57:0.421:2
chr2	225362478	rs3738952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:30:31:0.581:2	./.	./.	./.	./.
chr2	225642935	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,6:33:118:0.051:2	./.	./.	./.
chr2	225659728	rs113265459	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,74:32:145:0.510:2	./.	./.	./.
chr2	225661852	rs76100309	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,47:32:124:0.379:2	0/1:63,46:31:109:0.422:2	./.	./.	./.	./.	./.	./.
chr2	225670901	rs4674941	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:33:16:0.714:2	./.	./.	./.	./.	./.	0/1:33,29:33:62:0.468:2	./.	0/1:63,32:33:95:0.337:2
chr2	225672460	rs12328236	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	0/1:32,32:32:64:0.500:2	./.	0/1:21,22:33:43:0.512:2
chr2	225684166	rs7572725	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:33:21:0.429:2	./.	./.	./.	./.	./.	0/1:51,46:34:97:0.474:2	./.	0/1:64,40:33:104:0.385:2
chr2	225695337	rs200129332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:35:170:0.024:2	./.	./.
chr2	225709926	rs7577271	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	0/1:33,34:30:67:0.507:2	./.	0/1:65,29:29:94:0.309:2
chr2	225709930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:34:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr2	225719693	rs16866236	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	225727431	rs7589474	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	0/1:87,76:34:163:0.466:2	./.	0/1:89,75:32:164:0.457:2
chr2	225729627	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.
chr2	225750861	rs2304336	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:33:60:0.433:2	./.	0/1:17,26:30:43:0.605:2
chr2	225811581	rs13021295	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,32:32:97:0.330:2	./.	0/1:53,49:31:102:0.480:2
chr2	225811592	rs78257220	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,33:33:99:0.333:2	./.	./.
chr2	226273689	rs2048936	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:75:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,82:28:83:1.00:2	0/1:3,54:28:57:0.947:2	0/1:48,47:29:95:0.495:2	0/1:0,89:28:89:1.00:2	0/1:0,117:29:117:1.00:2	0/1:0,113:29:113:1.00:2	0/1:0,75:28:75:1.00:2	0/1:2,89:29:91:0.978:2
chr2	226273737	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr2	226273749	rs61747063	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,25:31:54:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr2	226447369	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:31:53:0.434:2	./.	./.	./.
chr2	226447735	rs3828256	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,15:31:15:1.00:2	0/1:16,16:31:32:0.500:2	0/1:14,11:30:25:0.440:2	./.	0/1:0,19:31:19:1.00:2	0/1:0,36:33:36:1.00:2	0/1:5,11:33:16:0.688:2	0/1:9,8:31:17:0.471:2
chr2	226491770	rs3748993	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:89:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,86:32:87:1.00:2	0/1:56,49:32:105:0.467:2	0/1:0,123:32:123:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,111:32:111:1.00:2
chr2	227660544	rs1801278	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,24:31:36:0.686:2	0/1:12,29:32:41:0.707:2	0/1:14,25:31:39:0.641:2	0/1:26,30:32:56:0.536:2	./.	./.	./.
chr2	227660776	rs35909627	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:30:58:0.483:2	./.	./.	./.	./.
chr2	227660967	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.
chr2	227661451	rs34909077	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,51:31:119:0.429:2	./.
chr2	227661463	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	227662557	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:14:21:0.524:2	./.
chr2	227662753	rs2234931	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,45:30:112:0.402:2	0/1:49,42:30:92:0.462:2	0/1:69,50:31:119:0.420:2	0/1:66,37:31:103:0.359:2	./.	./.	./.
chr2	227872182	rs2228557	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:50,47:32:97:0.485:2	0/1:45,21:32:66:0.318:2	0/1:15,5:31:20:0.250:2	./.	./.	0/1:68,64:31:132:0.485:2	./.	0/1:93,60:31:153:0.392:2	0/1:72,55:33:127:0.433:2	./.	0/1:82,65:32:147:0.442:2
chr2	227872995	rs2228555	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,101:32:102:0.990:2	0/1:0,59:31:59:1.00:2	0/1:14,11:32:25:0.440:2	./.	0/1:87,68:31:155:0.439:2	0/1:99,66:32:165:0.400:2	./.	0/1:78,58:32:136:0.426:2	0/1:93,58:33:151:0.384:2	0/1:2,132:32:135:0.985:2	0/1:85,58:32:143:0.406:2
chr2	227886773	rs3752895	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,32:30:64:0.500:2	0/1:15,11:32:26:0.423:2	0/1:2,3:33:5:0.600:2	./.	./.	0/1:31,28:32:59:0.475:2	./.	0/1:41,20:31:61:0.328:2	0/1:27,23:31:50:0.460:2	./.	0/1:38,23:32:61:0.377:2
chr2	227886828	rs75398993	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,44:33:88:0.500:2	./.
chr2	227892619	rs2228556	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:34:22:0.500:2	0/1:2,7:32:9:0.778:2	./.	./.	./.	0/1:13,19:32:32:0.594:2	./.	0/1:10,15:33:25:0.600:2	0/1:14,20:33:34:0.588:2	./.	0/1:11,11:33:22:0.500:2
chr2	227892720	rs2229813	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:30:10:0.500:2	0/1:3,8:31:11:0.727:2	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	0/1:3,12:32:15:0.800:2	./.	0/1:14,7:31:21:0.333:2
chr2	227896886	rs2229812	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:15,13:32:28:0.464:2	0/1:11,7:32:18:0.389:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:15,20:32:35:0.571:2	./.	0/1:17,7:32:24:0.292:2	0/1:25,19:31:44:0.432:2	./.	0/1:20,13:30:33:0.394:2
chr2	227896976	rs10203363	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:31:27:0.407:2	0/1:9,6:31:15:0.400:2	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	0/1:15,6:31:21:0.286:2	0/1:27,8:30:35:0.229:2	./.	0/1:9,7:29:16:0.438:2
chr2	227915832	rs1800517	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,69:33:69:1.00:2	0/1:0,34:32:34:1.00:2	0/1:8,3:32:11:0.273:2	./.	0/1:34,31:32:65:0.477:2	0/1:41,34:32:75:0.453:2	./.	0/1:36,39:33:75:0.520:2	0/1:47,43:34:90:0.478:2	0/1:1,56:33:57:0.982:2	0/1:37,32:33:69:0.464:2
chr2	227915847	rs13027659	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,34:31:67:0.507:2	./.	0/1:29,32:31:61:0.525:2	./.	./.	./.	./.	./.
chr2	227942764	rs145806603	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2
chr2	227946893	rs1800516	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,24:33:55:0.436:2	0/1:21,18:33:39:0.462:2	./.	./.	0/1:27,29:32:56:0.518:2	./.	./.	./.	./.	0/1:0,63:33:63:1.00:2	./.
chr2	227954599	rs2229814	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:72,62:32:136:0.463:2	0/1:49,32:32:81:0.395:2	0/1:11,10:31:21:0.476:2	./.	0/1:44,33:32:77:0.429:2	0/1:67,68:32:135:0.504:2	./.	0/1:99,70:32:169:0.414:2	0/1:102,67:33:169:0.396:2	0/1:2,116:32:118:0.983:2	0/1:95,80:32:176:0.457:2
chr2	228102723	rs13424243	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,9:30:28:0.321:2	./.	0/1:12,11:29:23:0.478:2	0/1:44,21:30:65:0.323:2	./.	./.	./.
chr2	228102752	rs1882435	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,29:31:30:0.967:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:8,9:29:17:0.529:2	0/1:19,19:31:38:0.500:2	./.	./.	0/1:30,20:31:50:0.400:2	0/1:20,18:31:38:0.474:2	0/1:45,25:31:70:0.357:2
chr2	228111435	rs10178458	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,61:30:61:1.00:2	0/1:43,23:30:66:0.348:2	0/1:43,43:29:86:0.500:2	0/1:0,52:30:52:1.00:2	0/1:33,20:29:53:0.377:2	0/1:0,89:29:89:1.00:2
chr2	228113175	rs6436669	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,34:33:34:1.00:2	0/1:12,20:33:32:0.625:2	0/1:27,38:33:65:0.585:2	0/1:0,32:34:32:1.00:2	0/1:17,16:33:33:0.485:2	0/1:0,56:32:56:1.00:2
chr2	228121101	rs55703767	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,34:30:35:0.971:2	./.	./.	./.	./.	0/1:44,20:32:64:0.313:2	0/1:18,11:32:29:0.379:2	0/1:51,20:31:71:0.282:2
chr2	228128540	rs10205042	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,25:33:57:0.439:2	0/1:14,17:32:31:0.548:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,32:31:32:1.00:2	0/1:25,35:32:60:0.583:2	0/1:22,20:34:42:0.476:2	./.	0/1:29,31:32:60:0.517:2
chr2	228128568	rs34505188	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	0/1:1,31:30:33:0.969:2	0/1:24,26:30:50:0.520:2	./.	./.	./.	./.	./.
chr2	228131169	rs11677877	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:30:16:0.688:2	./.	0/1:1,95:29:96:0.990:2	0/1:89,75:30:164:0.457:2	./.	./.	./.	./.	./.
chr2	228131752	rs34019152	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	0/1:3,30:31:33:0.909:2	0/1:6,16:30:22:0.727:2	./.	./.	./.	./.	./.
chr2	228135631	rs28381984	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:32:59:0.441:2	0/1:42,23:31:65:0.354:2	0/1:31,27:34:58:0.466:2	./.	0/1:40,38:33:78:0.487:2
chr2	228194480	rs3211097	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:33:14:0.214:2	./.	./.	./.	0/1:83,39:32:122:0.320:2	0/1:1,97:32:98:0.990:2	0/1:120,60:33:180:0.333:2	./.	0/1:108,44:33:152:0.289:2
chr2	228194481	rs3211098	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	0/1:78,40:31:118:0.339:2	0/1:1,97:31:98:0.990:2	0/1:123,60:32:183:0.328:2	./.	0/1:104,45:32:149:0.302:2
chr2	228197237	rs200360134	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr2	228197238	rs11557342	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:30:15:0.400:2	./.	0/1:35,36:32:71:0.507:2	0/1:50,61:31:111:0.550:2	./.	./.	./.	./.	./.
chr2	228217223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.
chr2	228217260	rs140009845	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:61,36:32:97:0.371:2	0/1:23,26:32:49:0.531:2	./.	./.	./.	./.	./.	./.	./.	0/1:66,72:31:138:0.522:2	./.
chr2	228221725	rs74713223	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,15:34:30:0.500:2	0/1:2,7:33:9:0.778:2	./.	./.	0/1:9,11:33:20:0.550:2	0/1:17,7:33:24:0.292:2	0/1:7,12:33:19:0.632:2	./.	./.	./.	./.
chr2	228230945	rs76547437	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,42:33:89:0.472:2	0/1:29,30:32:59:0.508:2	./.	./.	0/1:41,26:31:67:0.388:2	0/1:48,49:31:97:0.505:2	0/1:35,26:31:61:0.426:2	./.	./.	./.	./.
chr2	228243902	rs138536526	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,49:32:108:0.454:2	./.	./.	./.
chr2	228243905	rs7574414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,85:31:89:0.955:2	./.	./.	./.	./.	./.	./.	./.
chr2	228384735	rs1135969	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,44:33:102:0.431:2	./.	./.	./.	./.	./.
chr2	228396878	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr2	228398422	rs13015491	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	0/1:71,48:30:119:0.403:2	./.	./.
chr2	228416712	rs13426457	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,134:29:135:0.993:2	0/1:1,66:29:67:0.985:2	0/1:17,7:28:24:0.292:2	./.	0/1:3,167:29:170:0.982:2	0/1:0,180:29:180:1.00:2	0/1:102,85:29:187:0.455:2	0/1:1,187:29:188:0.995:2	0/1:99,84:30:183:0.459:2	0/1:0,117:29:117:1.00:2	0/1:1,143:28:144:0.993:2
chr2	228476140	rs2176186	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:102,93:32:195:0.477:2	0/1:85,57:32:142:0.401:2	./.	0/1:96,103:31:199:0.518:2	./.	0/1:0,194:31:194:1.00:2	./.	0/1:193,4:32:197:0.020:2	0/1:2,187:33:189:0.989:2	0/1:103,89:32:192:0.464:2	0/1:97,95:32:193:0.495:2
chr2	228476253	rs2138402	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:32:164:1.00:2	0/1:1,114:31:115:0.991:2	0/1:0,27:32:27:1.00:2	0/1:1,161:32:162:0.994:2	0/1:0,180:32:180:1.00:2	0/1:1,161:32:162:0.994:2	0/1:0,171:32:172:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,149:33:149:1.00:2	0/1:0,158:32:158:1.00:2	0/1:83,90:32:173:0.520:2
chr2	228493211	rs28739019	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,96:31:96:1.00:2	./.	./.	0/1:71,71:32:142:0.500:2	./.	./.	0/1:97,43:32:140:0.307:2
chr2	228563675	rs12185721	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,72:30:139:0.518:2	./.
chr2	228681077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2
chr2	228758554	rs1715828	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,12:32:13:0.923:2	./.	./.	0/1:47,69:32:116:0.595:2	./.	./.	./.	./.	./.
chr2	228758580	rs16824157	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,30:32:88:0.341:2	./.	./.	./.	./.	0/1:44,36:32:80:0.450:2
chr2	228762923	rs150979373	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.
chr2	228776996	rs3748862	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,32:31:65:0.492:2	0/1:22,31:31:53:0.585:2	./.	0/1:33,32:31:65:0.492:2	./.	0/1:0,70:30:70:1.00:2	0/1:53,39:31:92:0.424:2	0/1:50,31:30:81:0.383:2	0/1:51,33:32:84:0.393:2	0/1:16,15:31:31:0.484:2	0/1:0,67:32:67:1.00:2
chr2	228855866	rs16824283	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,28:32:54:0.519:2	./.	0/1:37,29:31:66:0.439:2	0/1:40,26:32:66:0.394:2	0/1:47,27:32:74:0.365:2	0/1:0,74:32:74:1.00:2	0/1:43,22:31:65:0.338:2	./.
chr2	228855993	rs61752221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,68:31:149:0.456:2	./.	./.	./.	./.	./.
chr2	228882970	rs3828161	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,76:28:176:0.432:2	0/1:2,148:28:150:0.987:2	./.	0/1:125,5:28:130:0.038:2	0/1:179,6:30:185:0.032:2	./.	./.	0/1:106,85:29:191:0.445:2
chr2	228883029	rs3811515	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:121,73:32:194:0.376:2	0/1:75,61:33:136:0.449:2	0/1:15,8:32:23:0.348:2	./.	./.	./.	0/1:90,60:33:150:0.400:2	./.	./.	./.	./.
chr2	228883721	rs3811514	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,52:30:95:0.547:2	0/1:17,22:29:39:0.564:2	0/1:0,17:30:17:1.00:2	0/1:41,35:29:76:0.461:2	0/1:0,64:29:64:1.00:2	./.	0/1:43,43:30:86:0.500:2	0/1:49,53:29:102:0.520:2	./.	0/1:53,54:31:107:0.505:2	0/1:50,40:30:90:0.444:2
chr2	229890660	rs34351298	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,65:32:137:0.474:2	./.	./.	./.	./.	0/1:66,57:31:123:0.463:2
chr2	230020595	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2
chr2	230253070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:28:78:0.051:2	./.	./.	./.
chr2	230377505	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.
chr2	230450646	rs72987941	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,13:29:34:0.394:2	0/1:27,16:28:43:0.372:2	./.	./.	0/1:48,40:29:88:0.455:2	./.	./.	./.	./.	./.	./.
chr2	230632268	rs6687	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,43:31:113:0.381:2	./.	./.	./.	./.	0/1:46,32:31:78:0.410:2	./.
chr2	230668858	rs13018957	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:97,87:29:184:0.473:2	0/1:52,52:29:104:0.500:2	0/1:17,9:31:26:0.346:2	./.	0/1:58,52:30:110:0.473:2	0/1:106,94:30:200:0.470:2	0/1:56,63:30:119:0.529:2	0/1:115,83:30:198:0.419:2	0/1:112,86:31:198:0.434:2	0/1:78,87:30:165:0.527:2	./.
chr2	230670459	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.
chr2	230670510	rs148271689	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:32:20:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	230723777	rs544480	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:27:16:0.375:2	./.	./.	./.	0/1:66,56:29:123:0.459:2	./.	./.	./.	0/1:1,91:28:92:0.989:2
chr2	230840974	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	230861519	rs1035834	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,87:32:87:1.00:2	0/1:1,45:32:46:0.978:2	./.	./.	0/1:56,38:31:94:0.404:2	./.	0/1:2,63:32:65:0.969:2	./.	0/1:91,52:32:144:0.364:2	0/1:73,45:31:118:0.381:2	./.
chr2	230910965	rs75457118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:30:41:0.415:2
chr2	230914601	rs200955444	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,14:11:87:0.161:2	0/1:72,10:14:82:0.122:2	./.	./.	./.	./.	./.
chr2	230914604	rs201907506	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,19:20:75:0.253:2	./.	./.	0/1:69,23:16:92:0.250:2	0/1:67,31:13:98:0.316:2	0/1:69,23:16:92:0.250:2	0/1:77,27:13:104:0.260:2	0/1:91,34:14:125:0.272:2	0/1:107,15:16:122:0.123:2	0/1:49,21:20:70:0.300:2	0/1:65,36:19:101:0.356:2
chr2	230923913	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:29:79:0.051:2	./.	./.	./.	./.	./.	./.
chr2	231036866	rs13018234	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,30:30:75:0.400:2	./.	./.	./.	0/1:2,118:30:120:0.983:2	./.	./.	./.
chr2	231042276	rs1135791	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,23:29:43:0.535:2	0/1:112,84:29:196:0.429:2	./.	0/1:113,86:28:199:0.432:2	0/1:103,64:28:167:0.383:2	0/1:3,190:29:193:0.984:2	./.	./.	0/1:102,88:28:190:0.463:2
chr2	231050715	rs3948464	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,166:29:166:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,26:29:26:1.00:2	0/1:92,104:30:196:0.531:2	0/1:0,159:29:159:1.00:2	0/1:1,188:29:190:0.995:2	0/1:0,161:30:161:1.00:2	./.	0/1:0,192:30:192:1.00:2	0/1:101,79:29:180:0.439:2	0/1:1,183:29:184:0.995:2
chr2	231072709	rs1365776	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,62:32:64:0.969:2	0/1:1,40:33:41:0.976:2	0/1:5,4:32:9:0.444:2	0/1:0,57:32:57:1.00:2	0/1:0,35:32:35:1.00:2	0/1:39,22:32:61:0.361:2	./.	./.	0/1:0,60:33:60:1.00:2	0/1:0,54:33:54:1.00:2	0/1:53,40:33:93:0.430:2
chr2	231077112	rs28930679	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:101,63:32:164:0.384:2	0/1:50,31:32:81:0.383:2	0/1:12,9:31:22:0.429:2	./.	0/1:1,129:31:130:0.992:2	./.	./.	./.	0/1:108,77:32:185:0.416:2	./.	./.
chr2	231077154	rs41309096	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:86,41:32:128:0.323:2	0/1:31,28:33:59:0.475:2	0/1:5,4:32:9:0.444:2	./.	0/1:0,80:32:80:1.00:2	./.	./.	./.	0/1:79,63:33:142:0.444:2	./.	./.
chr2	231077683	rs41309088	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,61:31:127:0.480:2	0/1:39,36:31:75:0.480:2	./.	./.	./.	./.	./.	./.	0/1:90,89:32:179:0.497:2	./.	./.
chr2	231077698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:34:176:0.023:2	./.	./.
chr2	231077725	rs1129411	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:30:92:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,15:31:15:1.00:2	0/1:66,71:30:137:0.518:2	0/1:0,136:30:136:1.00:2	0/1:0,122:30:122:1.00:2	0/1:2,147:30:149:0.987:2	0/1:160,9:31:169:0.053:2	0/1:0,152:31:152:1.00:2	0/1:41,62:31:103:0.602:2	0/1:0,127:30:127:1.00:2
chr2	231110582	rs28445040	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,36:32:71:0.507:2	./.	./.	./.	./.	./.	./.
chr2	231118041	rs3820975	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:34:14:0.571:2	0/1:68,42:33:110:0.382:2	./.	./.	./.	./.	0/1:83,46:34:129:0.357:2	0/1:45,44:33:90:0.494:2	./.
chr2	231120256	rs200772144	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2
chr2	231120257	rs201513131	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,9:24:29:0.310:2	./.	./.	./.	./.	0/1:26,15:23:41:0.366:2
chr2	231149094	rs370248892	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,48:32:123:0.390:2	0/1:36,21:31:57:0.368:2	./.	./.	./.	./.	./.	./.	0/1:75,52:32:127:0.409:2	./.	./.
chr2	231149097	rs4972945	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,99:30:196:0.505:2	./.	./.	./.	./.	0/1:54,74:30:129:0.578:2	0/1:52,75:30:127:0.591:2	./.
chr2	231149108	rs4972946	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:31:134:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,188:31:188:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,149:31:149:1.00:2	0/1:0,98:31:98:1.00:2	0/1:71,90:31:161:0.559:2	0/1:0,134:32:134:1.00:2	0/1:0,132:31:132:1.00:2	0/1:0,167:31:167:1.00:2
chr2	231175549	rs200258126	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,17:30:60:0.283:2	./.	0/1:142,53:29:195:0.272:2	0/1:153,42:27:195:0.215:2	0/1:133,57:28:191:0.300:2	./.	./.	./.	0/1:137,48:28:187:0.259:2
chr2	231176196	rs201144938	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,49:31:194:0.253:2	./.	./.	./.	./.	0/1:155,45:31:200:0.225:2	0/1:148,49:31:197:0.249:2	./.
chr2	231222570	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.
chr2	231222655	rs10498250	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,27:32:51:0.529:2	./.	./.	./.	./.	0/1:35,30:32:65:0.462:2	0/1:20,18:31:38:0.474:2	./.
chr2	231222675	rs4973318	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:28:37:0.459:2	./.	./.	./.	./.	0/1:27,17:27:44:0.386:2	0/1:13,12:28:25:0.480:2	./.
chr2	231248261	rs28497362	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,76:31:154:0.494:2	0/1:99,90:32:189:0.476:2
chr2	231249970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:86:0.047:2	./.
chr2	231256812	rs7559665	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,87:29:87:1.00:2	0/1:1,42:28:43:0.977:2	./.	0/1:39,48:30:87:0.552:2	./.	./.	0/1:29,28:30:57:0.491:2	./.	0/1:70,52:31:122:0.426:2	./.	./.
chr2	231256876	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.
chr2	231256878	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:31:128:0.039:2	./.	./.	./.
chr2	231256921	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:77,11:14:88:0.125:2	./.	./.	0/1:71,10:15:81:0.123:2	./.	0/1:69,9:17:78:0.115:2	0/1:45,14:13:59:0.237:2	./.	./.	0/1:58,7:21:65:0.108:2	./.
chr2	231258150	rs7590429	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:32:22:1.00:2	./.	0/1:15,12:32:27:0.444:2	0/1:27,19:32:46:0.413:2
chr2	231265761	rs374897131	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,20:28:75:0.267:2	./.	0/1:149,42:27:191:0.220:2	0/1:141,52:29:194:0.269:2	0/1:141,49:27:191:0.258:2	./.	./.	./.	0/1:139,47:28:186:0.253:2
chr2	231266408	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,50:30:198:0.254:2	./.	./.	./.	./.	0/1:152,47:32:199:0.236:2	0/1:151,46:32:198:0.234:2	./.
chr2	231314093	rs62193406	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,42:32:111:0.378:2	./.	./.	./.
chr2	231326065	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.
chr2	231327220	rs75519436	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:32:81:0.469:2	0/1:15,21:32:36:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	231331896	rs1050224	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,13:33:33:0.394:2	0/1:17,11:32:28:0.393:2	0/1:2,3:33:5:0.600:2	0/1:32,31:31:63:0.492:2	0/1:23,30:31:53:0.566:2	0/1:0,46:32:46:1.00:2	0/1:31,30:32:61:0.492:2	0/1:0,48:31:48:1.00:2	./.	0/1:17,11:32:28:0.393:2	0/1:0,50:32:50:1.00:2
chr2	231333763	rs12724	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:31:17:0.588:2	0/1:45,30:32:75:0.400:2	0/1:17,15:32:32:0.469:2	0/1:0,61:32:61:1.00:2	./.	./.	./.	0/1:39,36:32:76:0.480:2	0/1:2,83:33:86:0.976:2
chr2	231333834	rs1649873	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:18,11:31:29:0.379:2	0/1:5,3:30:8:0.375:2	0/1:0,22:31:22:1.00:2	./.	./.	./.	0/1:4,12:32:16:0.750:2	0/1:0,35:31:35:1.00:2
chr2	231334508	rs72983752	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,8:33:9:0.889:2
chr2	231379968	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:32:46:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	231405644	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2
chr2	231406012	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.
chr2	231406070	rs17275036	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,35:31:89:0.393:2	./.	./.	./.	0/1:31,41:31:72:0.569:2	0/1:55,52:31:107:0.486:2
chr2	231406680	rs836237	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:29:68:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,14:30:14:1.00:2	0/1:2,85:30:87:0.977:2	0/1:41,17:30:58:0.293:2	0/1:0,83:30:83:1.00:2	0/1:34,33:30:67:0.493:2	0/1:2,91:30:93:0.978:2	0/1:0,97:31:97:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,134:30:134:1.00:2
chr2	231738168	rs2289235	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,76:30:163:0.466:2	0/1:81,68:30:149:0.456:2	0/1:83,68:30:151:0.450:2	0/1:83,89:30:172:0.517:2	0/1:4,180:29:184:0.978:2	./.	0/1:0,98:30:99:1.00:2	0/1:59,43:27:102:0.422:2
chr2	231738263	rs2289234	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,72:31:154:0.468:2	0/1:86,49:31:135:0.363:2	0/1:87,51:30:138:0.370:2	0/1:75,56:30:131:0.427:2	0/1:4,136:30:140:0.971:2	./.	0/1:0,95:32:95:1.00:2	0/1:83,78:31:162:0.484:2
chr2	231738269	rs2289233	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,67:31:139:0.486:2	0/1:78,46:31:124:0.371:2	0/1:80,48:30:128:0.375:2	0/1:73,59:31:132:0.447:2	0/1:3,125:30:129:0.977:2	./.	0/1:0,84:32:84:1.00:2	0/1:76,68:31:144:0.472:2
chr2	231774844	rs2396777	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,42:31:81:0.519:2	./.	./.	./.	./.	./.	./.
chr2	231775094	rs3749073	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,46:31:103:0.447:2	./.	./.	./.	./.	./.	./.
chr2	231775297	rs1992186	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,13:33:30:0.433:2	0/1:12,10:30:22:0.455:2	./.	0/1:27,21:32:48:0.438:2	0/1:21,13:33:34:0.382:2	0/1:17,25:32:42:0.595:2	./.	./.	./.	./.	./.
chr2	231861044	rs13005918	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,65:30:65:1.00:2	0/1:43,29:31:72:0.403:2	0/1:0,50:31:50:1.00:2	0/1:94,21:30:115:0.183:2	./.	0/1:44,15:32:59:0.254:2	0/1:40,16:31:56:0.286:2
chr2	231861071	rs61738380	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,30:33:54:0.556:2	0/1:31,38:33:69:0.551:2	0/1:52,18:32:71:0.257:2	0/1:29,31:33:60:0.517:2	0/1:110,14:32:124:0.113:2	./.	0/1:55,10:32:65:0.154:2	0/1:50,12:32:62:0.194:2
chr2	231864529	rs6436986	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,14:32:38:0.368:2	0/1:7,6:33:13:0.462:2	0/1:0,6:32:6:1.00:2	0/1:16,22:33:38:0.579:2	0/1:0,27:31:27:1.00:2	0/1:21,15:32:36:0.417:2	0/1:0,32:33:32:1.00:2	0/1:23,18:30:41:0.439:2	./.	0/1:11,24:32:35:0.686:2	0/1:19,20:31:39:0.513:2
chr2	231865090	rs2271376	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,62:31:126:0.492:2	0/1:42,43:31:85:0.506:2	0/1:0,29:32:29:1.00:2	0/1:98,75:32:173:0.434:2	0/1:2,107:31:109:0.982:2	0/1:109,63:31:172:0.366:2	0/1:1,49:32:50:0.980:2	0/1:153,46:31:199:0.231:2	./.	0/1:74,57:31:131:0.435:2	0/1:74,35:31:109:0.321:2
chr2	231865144	rs12105962	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,89:33:159:0.560:2	./.	0/1:85,99:32:184:0.538:2	./.	./.	./.	0/1:63,84:33:147:0.571:2	0/1:48,60:31:108:0.556:2
chr2	231944264	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.
chr2	231988460	rs189218498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,85:31:167:0.509:2	./.	./.	./.
chr2	232018335	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,55:30:140:0.393:2	./.	./.
chr2	232072912	rs11558174	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,45:32:106:0.425:2	0/1:30,14:32:44:0.318:2	./.	0/1:87,79:32:166:0.476:2	./.	./.	0/1:57,29:33:87:0.337:2	./.	./.	./.	0/1:97,65:32:162:0.401:2
chr2	232081483	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,5:28:149:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	232087474	rs1626450	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:32:9:1.00:2	0/1:2,59:32:61:0.967:2	0/1:0,16:31:16:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,28:32:29:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,111:33:111:1.00:2
chr2	232087475	rs1626451	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:2,59:31:61:0.967:2	0/1:0,16:31:16:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,73:33:73:1.00:2	0/1:1,69:32:70:0.986:2	0/1:0,111:31:111:1.00:2
chr2	232146762	rs115969543	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,38:31:87:0.437:2	./.	./.	./.	./.	./.
chr2	232156084	rs148296188	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	./.	./.	./.	./.	./.
chr2	232196564	rs1669083	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,47:31:110:0.427:2	./.	0/1:59,40:32:99:0.404:2	0/1:66,48:32:114:0.421:2	0/1:60,58:32:118:0.492:2	./.	./.
chr2	232196597	rs1669084	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,22:32:62:0.355:2	./.	0/1:43,28:32:71:0.394:2	0/1:35,35:33:70:0.500:2	0/1:40,39:33:79:0.494:2	./.	./.
chr2	232263127	rs2290130	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:29:24:0.417:2	./.	0/1:80,56:28:136:0.412:2	./.	./.	./.	0/1:71,82:31:153:0.536:2	./.	./.
chr2	232326417	rs1131171	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:190,4:32:194:0.021:2	./.	0/1:25,32:32:57:0.561:2	./.	./.	0/1:98,98:31:196:0.500:2	./.	./.	./.	0/1:103,87:32:190:0.458:2	0/1:98,97:32:195:0.497:2
chr2	232378231	rs6750795	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:68,58:32:126:0.460:2	0/1:37,31:32:68:0.456:2	0/1:0,6:32:6:1.00:2	./.	0/1:66,61:31:127:0.480:2	0/1:62,85:32:148:0.578:2	0/1:48,58:32:106:0.547:2	0/1:80,84:32:164:0.512:2	0/1:78,76:33:154:0.494:2	0/1:55,57:32:112:0.509:2	0/1:81,82:33:163:0.503:2
chr2	232392957	rs150482580	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:32:77:0.519:2	0/1:25,23:31:48:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	232457857	rs17199614	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:29:44:0.409:2	0/1:26,27:30:53:0.509:2
chr2	232457880	rs74460533	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:32:50:0.620:2	./.	./.	./.
chr2	232457983	rs149451630	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.
chr2	232458443	rs10933378	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,25:31:25:1.00:2	0/1:1,29:33:30:0.967:2	0/1:1,31:32:32:0.969:2	0/1:0,25:33:25:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,13:30:13:1.00:2
chr2	232458482	rs150621017	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:32:45:0.533:2	./.	./.	./.	./.	./.
chr2	232578033	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:34:195:0.036:2	./.
chr2	232653358	rs11557625	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,21:33:60:0.350:2
chr2	232656436	rs115875756	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:31:182:0.473:2	./.	./.	./.	./.	./.
chr2	232656741	rs117887698	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,40:30:116:0.345:2	./.	./.	0/1:67,54:30:121:0.446:2	./.	./.	./.	./.
chr2	232790229	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2
chr2	232879671	rs723044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,20:31:29:0.690:2	./.	./.	./.
chr2	232995439	rs184764939	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,48:31:91:0.539:2	./.	./.
chr2	233075081	rs17272089	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,64:32:126:0.508:2	0/1:32,28:32:60:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	233127939	rs148474013	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	233199107	rs75782436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:32:102:0.461:2	./.	./.	./.
chr2	233199346	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,8:30:151:0.053:2	0/1:74,13:30:88:0.149:2	0/1:28,4:34:32:0.125:2	0/1:170,19:30:189:0.101:2	0/1:184,9:30:195:0.047:2	./.	0/1:183,15:31:198:0.076:2	0/1:183,11:31:194:0.057:2	0/1:170,12:31:182:0.066:2	./.	0/1:111,5:27:116:0.043:2
chr2	233199380	rs201503361	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,9:29:169:0.054:2	0/1:88,13:30:101:0.129:2	0/1:27,5:32:32:0.156:2	0/1:172,19:30:191:0.099:2	0/1:184,10:31:194:0.052:2	./.	0/1:171,17:31:188:0.090:2	0/1:176,13:30:190:0.069:2	0/1:181,14:30:195:0.072:2	./.	0/1:125,5:29:130:0.038:2
chr2	233201328	rs3811578	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:29:15:0.467:2	./.	./.	./.
chr2	233243586	rs1130335	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,32:30:98:0.327:2	./.	./.	./.	./.	./.
chr2	233243981	rs13026692	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,38:31:100:0.380:2	0/1:32,30:31:62:0.484:2	0/1:5,8:31:13:0.615:2	0/1:0,136:31:136:1.00:2	./.	./.	0/1:0,130:31:130:1.00:2	0/1:108,75:31:183:0.410:2	0/1:0,135:32:136:1.00:2	./.	./.
chr2	233244230	rs1130341	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr2	233244586	rs2853374	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:28:76:1.00:2	0/1:0,60:27:60:1.00:2	0/1:10,6:28:16:0.375:2	0/1:0,105:28:105:1.00:2	0/1:0,111:28:111:1.00:2	0/1:0,138:28:138:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,133:28:133:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,95:27:95:1.00:2	0/1:0,49:27:49:1.00:2
chr2	233244616	rs74337556	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.
chr2	233244930	rs1048988	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,78:33:182:0.429:2	0/1:60,36:32:96:0.375:2	./.	./.	./.	0/1:119,70:32:189:0.370:2	./.	0/1:103,78:33:181:0.431:2	0/1:184,6:33:190:0.032:2	0/1:105,84:32:189:0.444:2	0/1:93,83:33:176:0.472:2
chr2	233244937	rs1048989	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,12:31:190:0.063:2	0/1:100,6:32:106:0.057:2	./.	./.	./.	0/1:176,16:32:192:0.083:2	./.	0/1:185,8:31:193:0.041:2	0/1:185,6:32:191:0.031:2	0/1:175,20:30:195:0.103:2	0/1:175,12:30:187:0.064:2
chr2	233245020	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:29:122:0.041:2	./.	./.	./.
chr2	233245026	rs2853378	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,5:27:100:0.050:2	./.	0/1:62,50:28:113:0.446:2	0/1:81,15:29:96:0.156:2	./.	./.	./.	./.
chr2	233245141	rs2260309	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,91:30:154:0.591:2	0/1:35,42:30:77:0.545:2	0/1:3,8:31:11:0.727:2	0/1:0,119:30:119:1.00:2	./.	0/1:63,127:30:190:0.668:2	0/1:7,185:30:192:0.964:2	0/1:83,114:30:197:0.579:2	0/1:0,152:30:152:1.00:2	0/1:103,89:30:192:0.464:2	0/1:65,95:30:160:0.594:2
chr2	233245210	rs13034594	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,55:30:160:0.344:2	0/1:88,27:32:115:0.235:2	./.	./.	./.	0/1:126,57:30:183:0.311:2	./.	0/1:128,49:31:177:0.277:2	0/1:134,49:31:183:0.268:2	0/1:90,59:30:150:0.396:2	0/1:136,54:30:190:0.284:2
chr2	233246055	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:188:0.021:2	./.	./.	./.
chr2	233271628	rs61730279	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.	./.	./.
chr2	233271669	rs139018608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:32:103:0.049:2	./.	./.	./.	./.	./.
chr2	233271687	rs200991140	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,9:29:105:0.086:2	./.	./.	./.	./.	./.
chr2	233271799	rs146369944	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	0/1:56,10:31:66:0.152:2	0/1:64,11:27:75:0.147:2	0/1:57,6:33:63:0.095:2	./.	0/1:48,10:31:58:0.172:2	0/1:47,7:30:54:0.130:2	0/1:37,4:31:41:0.098:2
chr2	233272091	rs146482704	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,50:31:125:0.400:2	./.	./.	./.	./.	./.
chr2	233273011	rs75920311	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,50:28:190:0.263:2	./.	./.	0/1:113,45:28:158:0.285:2	./.	./.	./.	./.
chr2	233273018	rs75080031	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:175,19:31:194:0.098:2	./.	./.	0/1:139,49:31:189:0.261:2	./.	0/1:179,16:30:196:0.082:2	0/1:117,44:31:162:0.273:2	0/1:174,23:30:197:0.117:2	./.	0/1:175,18:31:193:0.093:2	0/1:170,22:27:192:0.115:2
chr2	233273081	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,4:31:155:0.026:2	./.	./.	./.	./.	./.	./.
chr2	233273102	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.
chr2	233273107	rs1130346	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:32:64:0.063:2	0/1:46,7:32:54:0.132:2	./.	./.	./.	0/1:56,6:32:62:0.097:2	./.	0/1:88,11:32:99:0.111:2	0/1:61,13:32:74:0.176:2	0/1:0,23:31:23:1.00:2	0/1:36,4:27:41:0.100:2
chr2	233273207	rs2945421	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,7:29:51:0.137:2	./.	./.	0/1:107,12:30:119:0.101:2	./.	0/1:79,20:30:99:0.202:2	0/1:114,23:30:137:0.168:2	0/1:66,23:30:89:0.258:2	0/1:53,26:31:79:0.329:2	0/1:0,4:32:5:1.00:2	0/1:58,6:31:65:0.094:2
chr2	233273244	rs17416141	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,6:33:64:0.095:2	0/1:33,4:25:37:0.108:2	./.	0/1:91,60:31:152:0.397:2	./.	0/1:0,95:31:95:1.00:2	0/1:85,106:31:191:0.555:2	0/1:92,25:32:117:0.214:2	0/1:93,19:32:112:0.170:2	0/1:0,11:32:11:1.00:2	0/1:80,6:31:86:0.070:2
chr2	233273291	rs186417264	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,8:31:141:0.057:2	0/1:122,4:30:126:0.032:2	0/1:1,15:30:16:0.938:2	0/1:71,4:30:75:0.053:2
chr2	233273504	rs183793479	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:1,3:32:4:0.750:2	./.	0/1:2,26:31:28:0.929:2	0/1:0,26:30:26:1.00:2	0/1:0,19:30:19:1.00:2	0/1:1,19:29:20:0.950:2	0/1:2,7:32:9:0.778:2	0/1:2,12:29:14:0.857:2	./.	./.
chr2	233274145	rs2090543	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:29:47:0.979:2	0/1:0,40:28:40:1.00:2	0/1:23,7:29:30:0.233:2	0/1:1,86:28:87:0.989:2	0/1:0,83:28:83:1.00:2	0/1:1,63:29:64:0.984:2	0/1:0,59:29:59:1.00:2	0/1:2,31:28:33:0.939:2	0/1:1,46:29:47:0.979:2	0/1:0,10:32:10:1.00:2	./.
chr2	233274509	rs1048995	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr2	233321641	rs61732032	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,93:30:191:0.487:2	0/1:94,97:31:192:0.508:2	./.	./.	./.	0/1:63,69:30:132:0.523:2
chr2	233322958	rs41265121	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,83:29:167:0.500:2	0/1:82,42:30:125:0.339:2	./.	./.	./.	0/1:37,24:29:62:0.393:2
chr2	233346498	rs142492002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	233347590	rs1190429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,54:32:137:0.394:2	./.	./.	./.	./.
chr2	233347804	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,12:14:153:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr2	233348878	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,7:20:126:0.056:2	./.	./.	./.	./.
chr2	233348883	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,22:9:119:0.185:2	./.	0/1:93,29:7:122:0.238:2	./.	./.	./.	./.
chr2	233349588	rs1529874	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:29:54:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,132:29:133:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,80:29:81:1.00:2	0/1:0,51:30:51:1.00:2
chr2	233390937	rs2245601	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:30:22:1.00:2	./.	0/1:0,189:29:189:1.00:2	./.	./.	0/1:3,184:29:187:0.984:2	./.	0/1:89,52:29:141:0.369:2	./.
chr2	233392181	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:33:24:0.167:2	./.	./.	./.	./.	./.	./.
chr2	233399919	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.
chr2	233410294	rs2099489	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,79:30:79:1.00:2	./.	0/1:61,57:31:118:0.483:2	./.	./.	./.	./.	0/1:1,66:31:67:0.985:2
chr2	233412820	rs4973539	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	233413648	rs72991949	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr2	233413771	rs6752614	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:32:9:1.00:2	0/1:9,9:32:18:0.500:2	0/1:8,11:31:19:0.579:2	./.	0/1:11,5:33:16:0.313:2	./.	0/1:5,7:33:12:0.583:2	0/1:0,28:33:28:1.00:2
chr2	233414341	rs4973540	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	0/1:6,5:31:11:0.455:2	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	0/1:0,8:33:8:1.00:2
chr2	233414660	rs4973541	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:33:35:1.00:2	./.	0/1:13,13:31:26:0.500:2	./.	./.	./.	./.	0/1:0,26:32:26:1.00:2
chr2	233414721	rs11683262	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:31:35:1.00:2	./.	0/1:22,16:29:38:0.421:2	./.	./.	./.	./.	0/1:0,28:31:28:1.00:2
chr2	233414832	rs11689217	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:34:10:1.00:2	./.	0/1:3,6:33:9:0.667:2	./.	./.	./.	./.	0/1:0,18:33:18:1.00:2
chr2	233438786	rs2293338	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	0/1:36,65:32:101:0.644:2	./.	./.	0/1:45,57:32:102:0.559:2	./.	./.	./.
chr2	233470843	rs7571133	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:31:74:0.986:2	0/1:0,35:31:35:1.00:2	0/1:12,5:30:17:0.294:2	0/1:85,75:29:160:0.469:2	./.	./.	0/1:3,89:30:92:0.967:2	./.	0/1:1,116:31:117:0.991:2	./.	0/1:67,38:29:106:0.362:2
chr2	233498669	rs2276557	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	./.	./.	./.	./.	./.
chr2	233537094	rs201148325	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,90:32:192:0.469:2	./.	./.	./.
chr2	233537125	rs11550699	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,46:33:102:0.451:2	0/1:25,24:32:49:0.490:2	0/1:6,13:32:19:0.684:2	./.	0/1:1,153:32:154:0.994:2	0/1:80,70:32:150:0.467:2	0/1:109,87:32:196:0.444:2	0/1:91,92:32:183:0.503:2	./.	0/1:58,56:33:114:0.491:2	./.
chr2	233599904	rs11555646	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,18:32:48:0.375:2	0/1:40,43:32:83:0.518:2	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.
chr2	233633460	rs1801251	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,12:31:15:0.800:2	./.	0/1:43,52:30:95:0.547:2	0/1:75,69:30:144:0.479:2	./.	0/1:99,71:30:170:0.418:2	./.	./.	./.
chr2	233653267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.
chr2	233660900	rs200311449	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.
chr2	233708806	rs3816334	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:0,56:33:56:1.00:2	0/1:6,13:32:19:0.684:2	0/1:0,111:33:111:1.00:2	0/1:68,50:33:119:0.424:2	0/1:53,58:32:111:0.523:2	0/1:5,96:33:101:0.950:2	0/1:102,96:33:198:0.485:2	0/1:1,124:33:125:0.992:2	0/1:0,132:33:132:1.00:2	0/1:1,135:33:136:0.993:2
chr2	233708812	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:39:130:0.031:2	./.	./.	./.	./.	./.
chr2	233709215	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:34:38:0.105:2	./.	./.
chr2	233712227	rs66736190	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:30:10:0.800:2	./.	./.	./.	0/1:8,3:28:11:0.273:2	./.	0/1:0,6:32:6:1.00:2	./.	./.	0/1:0,9:32:9:1.00:2	./.
chr2	233712248	rs12328151	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,9:27:13:0.692:2	0/1:7,11:31:18:0.611:2	./.	0/1:6,4:28:10:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr2	233740227	rs778338	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,20:32:60:0.333:2	0/1:24,8:31:32:0.250:2	./.	0/1:2,57:31:59:0.966:2	./.	0/1:47,32:32:79:0.405:2	0/1:2,64:31:66:0.970:2	./.	./.	./.	0/1:0,65:32:65:1.00:2
chr2	233750074	rs2292725	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,17:30:33:0.515:2	0/1:13,18:30:31:0.581:2	./.	0/1:2,96:29:98:0.980:2	./.	0/1:33,46:29:79:0.582:2	./.	./.	./.	./.	./.
chr2	233757679	rs748002	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,163:32:166:0.982:2	./.	./.	./.	0/1:0,135:32:135:1.00:2
chr2	233757697	rs895432	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,168:30:168:1.00:2	0/1:0,133:31:133:1.00:2	0/1:1,125:30:126:0.992:2	0/1:0,130:31:130:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,119:31:119:1.00:2
chr2	233785015	rs778354	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,19:32:19:1.00:2	./.	0/1:0,16:31:16:1.00:2	0/1:0,23:32:23:1.00:2	./.	./.	./.	0/1:0,21:32:21:1.00:2
chr2	233834975	rs4973588	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,142:29:144:0.993:2	0/1:0,76:29:76:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,134:29:134:1.00:2	0/1:1,140:29:141:0.993:2	0/1:3,148:29:151:0.980:2	0/1:1,131:29:132:0.992:2	0/1:0,156:29:156:1.00:2	0/1:0,149:30:149:1.00:2	0/1:0,158:29:158:1.00:2	0/1:91,106:29:197:0.538:2
chr2	233877865	rs111339824	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:35:119:0.034:2	./.	./.	./.
chr2	233899126	rs2233391	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,44:30:44:1.00:2	0/1:0,35:30:35:1.00:2	./.	./.	0/1:33,35:29:68:0.515:2	0/1:46,28:29:74:0.378:2	./.	0/1:2,64:28:66:0.970:2	./.	0/1:20,11:30:31:0.355:2	0/1:23,20:29:43:0.465:2
chr2	233925239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2
chr2	234106812	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2
chr2	234113057	rs7346	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.
chr2	234115337	rs3792117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,11:31:37:0.297:2	./.	./.	./.	./.	./.	./.	./.
chr2	234171812	rs13011156	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,35:33:83:0.422:2	0/1:30,22:33:52:0.423:2	./.	./.	0/1:70,48:33:118:0.407:2	./.	./.	./.	./.	./.	./.
chr2	234183368	rs2241880	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:32:120:1.00:2	0/1:0,69:33:69:1.00:2	0/1:19,9:33:28:0.321:2	0/1:89,77:33:166:0.464:2	0/1:66,53:33:119:0.445:2	0/1:102,75:32:177:0.424:2	0/1:89,69:32:158:0.437:2	0/1:98,95:33:193:0.492:2	0/1:2,155:33:158:0.987:2	0/1:0,114:33:115:1.00:2	./.
chr2	234186290	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:198:0.020:2	./.	./.	./.
chr2	234191361	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:34:185:0.022:2	./.	./.
chr2	234217866	rs200078242	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,36:31:94:0.383:2	./.	./.	./.
chr2	234227523	rs2304777	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,122:31:123:0.992:2	0/1:3,51:29:54:0.944:2	0/1:11,9:31:20:0.450:2	0/1:90,90:30:180:0.500:2	0/1:66,68:29:134:0.507:2	0/1:77,73:30:150:0.487:2	0/1:4,149:30:153:0.974:2	0/1:86,75:29:161:0.466:2	0/1:0,130:31:130:1.00:2	0/1:0,139:31:139:1.00:2	0/1:59,86:30:145:0.593:2
chr2	234229295	rs72976383	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.
chr2	234235820	rs2304773	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,53:33:126:0.421:2	./.	./.	./.	./.	./.	./.	0/1:68,49:33:117:0.419:2
chr2	234250959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2
chr2	234255547	rs1046974	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,58:32:58:1.00:2	0/1:1,46:31:47:0.979:2	0/1:6,7:30:13:0.538:2	./.	./.	0/1:48,40:31:88:0.455:2	0/1:3,50:31:53:0.943:2	0/1:52,48:32:100:0.480:2	./.	0/1:0,66:31:66:1.00:2	0/1:0,100:31:100:1.00:2
chr2	234255548	rs1046976	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:35:80:0.413:2	./.	./.
chr2	234294644	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:30:22:0.136:2	./.	./.	./.	./.	./.	./.	./.
chr2	234350586	rs73995951	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.
chr2	234354320	rs2305541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,81:30:173:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr2	234356807	rs10208953	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,26:33:73:0.356:2	./.	./.	./.	./.	./.	./.	./.
chr2	234368468	rs61752229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234371351	rs2228939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:33:50:0.480:2	./.	./.	./.	./.	0/1:20,21:33:41:0.512:2	./.	0/1:28,20:32:48:0.417:2
chr2	234372874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.
chr2	234386134	rs2971863	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:30:11:0.364:2	0/1:35,29:31:65:0.453:2	./.	0/1:28,17:29:45:0.378:2	./.	./.	./.	0/1:19,8:28:27:0.296:2	0/1:26,24:29:50:0.480:2
chr2	234394487	rs1048603	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:30:10:0.700:2	0/1:0,93:31:93:1.00:2	./.	0/1:50,56:31:107:0.528:2	./.	0/1:59,59:32:118:0.500:2	0/1:65,54:32:119:0.454:2	0/1:42,34:32:76:0.447:2	0/1:0,92:31:92:1.00:2
chr2	234394569	rs2603547	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,16:31:44:0.364:2	./.	0/1:22,22:29:44:0.500:2	./.	./.	./.	0/1:21,16:31:37:0.432:2	0/1:20,16:28:36:0.444:2
chr2	234396605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:35:47:0.085:2	./.	./.
chr2	234432017	rs838543	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:33:13:0.385:2	0/1:59,58:31:117:0.496:2	./.	0/1:61,60:31:121:0.496:2	./.	./.	./.	0/1:51,42:32:93:0.452:2	0/1:53,63:33:116:0.543:2
chr2	234432061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:32:110:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr2	234433124	rs838549	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,12:30:31:0.387:2	./.	0/1:25,23:31:48:0.479:2	./.	./.	./.	0/1:13,16:32:29:0.552:2	0/1:20,26:32:46:0.565:2
chr2	234449316	rs2167884	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:100:1.00:2	0/1:0,57:32:57:1.00:2	0/1:21,11:31:32:0.344:2	0/1:78,85:31:163:0.521:2	0/1:0,84:31:84:1.00:2	0/1:72,74:31:146:0.507:2	0/1:0,92:31:92:1.00:2	0/1:0,156:31:156:1.00:2	0/1:0,128:32:128:1.00:2	0/1:73,72:31:145:0.497:2	0/1:86,68:31:154:0.442:2
chr2	234469664	rs6753062	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:33:74:0.986:2	0/1:0,37:32:37:1.00:2	0/1:4,4:32:8:0.500:2	0/1:41,32:32:73:0.438:2	0/1:0,59:31:59:1.00:2	0/1:39,56:32:95:0.589:2	0/1:0,44:32:44:1.00:2	0/1:52,31:32:83:0.373:2	0/1:0,67:32:68:1.00:2	0/1:26,32:32:58:0.552:2	0/1:46,55:32:101:0.545:2
chr2	234526794	rs1042591	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:33:65:0.476:2	./.
chr2	234526871	rs1042597	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:31:15:0.400:2	0/1:55,29:31:86:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr2	234527118	rs1042605	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,49:29:93:0.527:2	./.	0/1:46,50:29:97:0.521:2	0/1:67,48:29:115:0.417:2	./.	./.	0/1:58,57:29:115:0.496:2
chr2	234527183	rs17863762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:30:67:0.373:2	./.	./.	./.	./.	./.
chr2	234545294	rs11683356	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:32:109:0.477:2	./.	./.
chr2	234545802	rs139087628	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,6:32:168:0.036:2	./.	0/1:155,5:32:161:0.031:2	./.
chr2	234545816	rs140439109	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,6:32:147:0.041:2	./.	0/1:130,5:30:136:0.037:2	./.
chr2	234545861	rs17854828	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,13:32:58:0.224:2	./.	0/1:29,25:32:54:0.463:2	./.	./.	./.	0/1:68,56:33:124:0.452:2
chr2	234580588	rs145084767	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:32:81:0.407:2	0/1:19,22:31:41:0.537:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234581384	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:30:137:0.036:2	./.	./.	./.
chr2	234590616	rs7577677	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,31:30:80:0.388:2	0/1:36,9:31:45:0.200:2	./.	0/1:45,63:30:108:0.583:2	0/1:54,55:30:109:0.505:2	0/1:64,59:30:123:0.480:2	./.	0/1:80,60:31:140:0.429:2	0/1:0,146:31:146:1.00:2	0/1:55,57:31:112:0.509:2	./.
chr2	234590970	rs17868323	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,12:32:35:0.343:2	0/1:10,6:34:16:0.375:2	./.	0/1:32,6:32:38:0.158:2	0/1:0,12:29:12:1.00:2	0/1:29,4:32:33:0.121:2	0/1:11,5:29:16:0.313:2	0/1:1,15:31:16:0.938:2	0/1:0,20:31:20:1.00:2	0/1:19,6:33:25:0.240:2	0/1:26,14:31:40:0.350:2
chr2	234590974	rs17863778	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,10:31:34:0.294:2	0/1:12,3:31:15:0.200:2	./.	0/1:30,6:31:36:0.167:2	0/1:0,12:31:12:1.00:2	0/1:29,4:31:33:0.121:2	0/1:11,5:28:16:0.313:2	0/1:1,14:30:15:0.933:2	0/1:0,20:31:20:1.00:2	0/1:18,5:32:23:0.217:2	0/1:27,13:31:40:0.325:2
chr2	234590975	rs17868324	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,10:31:32:0.313:2	0/1:12,3:32:15:0.200:2	./.	0/1:30,6:31:36:0.167:2	0/1:0,12:31:12:1.00:2	0/1:29,4:31:33:0.121:2	0/1:11,5:26:16:0.313:2	0/1:1,14:31:15:0.933:2	0/1:0,20:31:20:1.00:2	0/1:18,5:32:23:0.217:2	0/1:26,13:30:39:0.333:2
chr2	234591205	rs11692021	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,75:29:143:0.524:2	0/1:42,35:29:77:0.455:2	./.	0/1:79,81:29:160:0.506:2	0/1:26,45:27:71:0.634:2	0/1:57,59:29:116:0.509:2	./.	0/1:70,102:29:172:0.593:2	0/1:2,160:29:162:0.988:2	0/1:54,66:28:120:0.550:2	./.
chr2	234591339	rs17864686	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,11:31:36:0.306:2	./.	0/1:26,13:30:39:0.333:2	./.	./.	./.	0/1:32,28:31:60:0.467:2
chr2	234601669	rs6759892	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,23:29:58:0.397:2	0/1:21,22:29:43:0.512:2	./.	0/1:48,32:30:80:0.400:2	0/1:30,30:29:60:0.500:2	0/1:26,36:29:62:0.581:2	./.	0/1:40,28:30:68:0.412:2	0/1:0,79:30:79:1.00:2	0/1:30,36:30:66:0.545:2	./.
chr2	234601965	rs1105880	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,36:33:63:0.571:2	0/1:14,19:32:33:0.576:2	./.	0/1:34,21:33:55:0.382:2	0/1:22,16:32:38:0.421:2	./.	./.	0/1:31,22:33:53:0.415:2	0/1:0,53:33:53:1.00:2	0/1:26,20:33:46:0.435:2	./.
chr2	234602191	rs2070959	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,36:33:81:0.444:2	0/1:17,25:33:42:0.595:2	./.	0/1:63,49:33:112:0.438:2	0/1:47,46:33:93:0.495:2	./.	./.	0/1:56,49:33:105:0.467:2	0/1:0,115:34:115:1.00:2	0/1:48,38:33:86:0.442:2	./.
chr2	234602202	rs1105879	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,39:32:89:0.438:2	0/1:18,24:32:42:0.571:2	./.	0/1:59,51:33:110:0.464:2	0/1:42,46:33:88:0.523:2	./.	./.	0/1:58,47:32:105:0.448:2	0/1:2,128:33:130:0.985:2	0/1:57,41:33:98:0.418:2	./.
chr2	234621780	rs3755323	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:30:78:0.364:2
chr2	234621787	rs3755322	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,28:32:79:0.354:2
chr2	234621825	rs3755321	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,42:29:114:0.368:2
chr2	234622061	rs3755320	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	0/1:114,79:32:193:0.409:2
chr2	234622110	rs12475068	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,86:32:182:0.475:2
chr2	234622282	rs17868333	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,67:31:169:0.396:2
chr2	234622294	rs17863790	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,58:32:163:0.356:2
chr2	234622310	rs17862867	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,51:30:162:0.315:2
chr2	234622379	rs2012736	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,12:31:118:0.102:2
chr2	234622382	rs17862868	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,13:33:114:0.114:2
chr2	234622412	rs3892170	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,17:28:106:0.160:2
chr2	234622420	rs17862869	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,19:29:106:0.179:2
chr2	234622429	rs2012734	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,51:31:101:0.505:2	0/1:36,34:32:70:0.486:2	./.	0/1:61,69:32:130:0.531:2	0/1:63,54:30:117:0.462:2	0/1:72,53:30:125:0.424:2	./.	0/1:1,141:31:142:0.993:2	0/1:0,121:32:121:1.00:2	0/1:49,58:31:107:0.542:2	0/1:77,22:31:99:0.222:2
chr2	234622486	rs149208140	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,39:31:85:0.459:2	./.	./.	./.	./.
chr2	234627536	rs6755571	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,80:30:159:0.503:2	./.	./.	./.	./.	./.
chr2	234627608	rs2011425	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:29:49:0.429:2
chr2	234627846	rs147555582	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr2	234627914	rs12468274	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	0/1:116,79:33:195:0.405:2
chr2	234627937	rs2011404	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,89:30:184:0.486:2	0/1:94,93:30:187:0.497:2	0/1:19,17:30:36:0.472:2	0/1:1,190:30:191:0.995:2	0/1:0,175:29:175:1.00:2	0/1:103,82:30:185:0.443:2	0/1:105,91:30:196:0.464:2	0/1:0,182:30:182:1.00:2	0/1:0,186:31:186:1.00:2	0/1:110,79:30:190:0.418:2	0/1:110,80:30:190:0.421:2
chr2	234628225	rs112157197	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:34:162:0.025:2	./.	./.	./.	./.	./.	./.
chr2	234628249	rs138347224	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:32:148:0.041:2
chr2	234628270	rs3732217	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,45:30:107:0.421:2
chr2	234637803	rs3821242	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,56:27:142:0.394:2	0/1:48,49:30:98:0.505:2	./.	0/1:103,81:30:184:0.440:2	0/1:93,83:31:176:0.472:2	0/1:86,79:30:165:0.479:2	./.	0/1:94,77:30:172:0.450:2	0/1:1,143:30:144:0.993:2	0/1:91,65:29:156:0.417:2	0/1:76,69:30:145:0.476:2
chr2	234637853	rs6706232	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,48:31:120:0.400:2	0/1:42,40:32:82:0.488:2	./.	0/1:79,65:30:144:0.451:2	0/1:102,72:30:174:0.414:2	0/1:55,54:30:109:0.495:2	./.	0/1:2,131:31:133:0.985:2	0/1:1,136:32:137:0.993:2	0/1:82,54:30:136:0.397:2	0/1:63,61:31:125:0.492:2
chr2	234637912	rs6431625	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,34:32:77:0.442:2	0/1:23,33:32:56:0.589:2	./.	0/1:61,55:32:116:0.474:2	0/1:86,60:31:146:0.411:2	0/1:51,42:32:94:0.452:2	./.	0/1:5,127:32:132:0.962:2	0/1:1,86:32:87:0.989:2	0/1:52,41:31:93:0.441:2	./.
chr2	234638006	rs17868336	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:30:102:0.461:2	./.	./.	./.	./.	./.
chr2	234638168	rs146432524	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,94:33:160:0.588:2	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.
chr2	234638249	rs7574296	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:85,102:29:187:0.545:2	0/1:57,65:29:122:0.533:2	./.	0/1:108,78:29:186:0.419:2	0/1:87,79:30:166:0.476:2	0/1:90,93:29:183:0.508:2	./.	0/1:2,175:29:177:0.989:2	0/1:2,184:30:186:0.989:2	0/1:113,83:29:196:0.423:2	0/1:95,81:29:176:0.460:2
chr2	234638522	rs115983652	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,11:29:156:0.071:2
chr2	234638547	rs149324549	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,9:30:136:0.066:2
chr2	234638580	rs45449995	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,44:30:98:0.449:2	0/1:29,29:30:58:0.500:2	./.	./.	./.	./.	./.	./.	0/1:73,57:30:130:0.438:2	./.	./.
chr2	234652308	rs34622615	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,38:30:59:0.644:2	0/1:16,16:31:32:0.500:2	./.	./.	./.	./.	./.	./.	0/1:19,14:30:33:0.424:2	./.	./.
chr2	234652347	rs13009407	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,34:28:67:0.507:2	0/1:27,24:26:51:0.471:2	./.	./.	0/1:26,15:25:41:0.366:2	0/1:33,22:27:55:0.400:2	0/1:27,28:26:55:0.509:2	./.
chr2	234652482	rs62191918	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:31:93:0.430:2
chr2	234652642	rs76063448	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr2	234676520	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.
chr2	234676992	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,52:28:108:0.481:2	./.	./.	./.	./.	./.	./.
chr2	234688036	rs6431631	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,15:30:30:0.500:2	0/1:2,179:31:181:0.989:2	0/1:1,143:31:144:0.993:2	0/1:86,88:31:174:0.506:2	0/1:89,58:30:147:0.395:2	0/1:0,160:31:160:1.00:2	0/1:0,180:31:180:1.00:2	0/1:76,54:31:130:0.415:2	0/1:1,190:32:191:0.995:2
chr2	234688327	rs17863803	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,101:33:197:0.513:2	./.	./.	0/1:88,91:34:179:0.508:2
chr2	234688360	rs17868345	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,77:32:167:0.461:2	./.	./.	./.	./.
chr2	234702459	rs1500481	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:32:35:0.400:2	0/1:2,145:32:147:0.986:2	0/1:0,181:32:181:1.00:2	./.	0/1:92,83:32:175:0.474:2	0/1:85,67:32:152:0.441:2	0/1:95,65:33:160:0.406:2	0/1:77,58:31:135:0.430:2	0/1:61,68:32:130:0.527:2
chr2	234703136	rs6431634	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:29:78:0.474:2	0/1:1,82:27:83:0.988:2	./.	0/1:68,26:29:94:0.277:2	0/1:47,36:27:85:0.434:2	0/1:43,20:30:63:0.317:2	0/1:40,22:28:64:0.355:2	0/1:33,24:27:57:0.421:2
chr2	234704318	rs2361503	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,88:32:153:0.575:2	0/1:0,179:32:179:1.00:2	./.	0/1:95,102:32:197:0.518:2	0/1:68,80:32:148:0.541:2	0/1:93,74:34:167:0.443:2	0/1:40,49:32:89:0.551:2	0/1:67,49:31:116:0.422:2
chr2	234704607	rs1076454	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,82:30:192:0.427:2	./.	./.	0/1:90,106:30:197:0.541:2	./.	./.	./.	./.
chr2	234704690	rs759173	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,45:28:106:0.425:2	0/1:57,41:27:98:0.418:2	0/1:0,17:28:17:1.00:2	0/1:1,109:27:110:0.991:2	0/1:0,146:27:146:1.00:2	./.	0/1:0,139:27:139:1.00:2	0/1:0,126:27:126:1.00:2	0/1:0,110:28:110:1.00:2	0/1:77,60:28:137:0.438:2	0/1:0,107:27:107:1.00:2
chr2	234707460	rs11563247	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,73:30:146:0.500:2	./.	0/1:61,55:30:116:0.474:2	./.	./.	0/1:68,76:31:144:0.528:2	./.	0/1:89,80:30:170:0.473:2
chr2	234708428	rs13013882	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,42:30:76:0.553:2	0/1:34,18:31:52:0.346:2	0/1:0,5:30:5:1.00:2	0/1:0,93:29:93:1.00:2	0/1:52,37:28:89:0.416:2	0/1:0,102:28:102:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,83:29:83:1.00:2	0/1:1,116:30:117:0.991:2	0/1:45,20:29:65:0.308:2	0/1:0,96:29:96:1.00:2
chr2	234708868	rs11563246	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:32:63:0.492:2	./.	./.	./.
chr2	234710831	rs10929306	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:30:9:0.444:2	0/1:29,27:32:56:0.482:2	0/1:38,22:32:60:0.367:2	0/1:49,20:32:69:0.290:2	0/1:67,24:32:93:0.264:2	./.	./.	./.	./.
chr2	234712127	rs182734868	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234713706	rs4430949	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:24,19:32:43:0.442:2	0/1:26,18:33:44:0.409:2	0/1:11,23:31:34:0.676:2	0/1:10,18:33:28:0.643:2	./.	./.	./.	./.
chr2	234713751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,6:32:70:0.086:2	./.	./.	./.
chr2	234716426	rs11563241	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:32:25:0.360:2	0/1:111,71:32:182:0.390:2	0/1:109,80:32:189:0.423:2	0/1:108,76:32:184:0.413:2	0/1:112,83:33:195:0.426:2	./.	./.	./.	./.
chr2	234725427	rs115274498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,24:32:67:0.364:2	./.	./.	./.	./.
chr2	234725502	rs726016	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:29:43:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,5:30:5:1.00:2	0/1:32,30:29:63:0.484:2	0/1:29,12:28:41:0.293:2	0/1:0,63:30:63:1.00:2	0/1:1,65:29:66:0.985:2	0/1:0,78:29:78:1.00:2	0/1:0,70:29:70:1.00:2	0/1:24,18:28:42:0.429:2	0/1:42,40:29:82:0.488:2
chr2	234727410	rs11563102	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,21:31:51:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr2	234727986	rs6754859	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,25:30:69:0.362:2	0/1:13,26:31:39:0.667:2	0/1:0,17:30:17:1.00:2	./.	./.	0/1:1,102:31:103:0.990:2	0/1:109,81:31:190:0.426:2	0/1:1,170:31:171:0.994:2	0/1:1,131:32:132:0.992:2	0/1:58,53:31:111:0.477:2	0/1:54,52:32:106:0.491:2
chr2	234728078	rs1500480	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,36:30:76:0.474:2	0/1:10,11:32:21:0.524:2	0/1:0,13:33:13:1.00:2	./.	0/1:71,57:31:128:0.445:2	0/1:3,97:32:100:0.970:2	0/1:0,130:31:130:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,115:33:115:1.00:2	0/1:49,49:32:98:0.500:2	0/1:35,32:32:67:0.478:2
chr2	234730807	rs6734083	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	./.	0/1:37,35:29:72:0.486:2	./.	./.	./.	./.
chr2	234731582	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.
chr2	234732311	rs17868361	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,69:31:69:1.00:2	0/1:37,45:31:82:0.549:2	0/1:41,23:30:64:0.359:2	./.	./.	./.	0/1:23,23:31:46:0.500:2	0/1:17,26:31:43:0.605:2
chr2	234732317	rs11676792	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:32:59:1.00:2	0/1:0,71:32:71:1.00:2	0/1:38,23:32:61:0.377:2	0/1:28,34:32:62:0.548:2	./.	./.	0/1:19,24:31:43:0.558:2	0/1:0,42:32:42:1.00:2
chr2	234737372	rs7564261	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,52:31:52:1.00:2	0/1:0,70:32:70:1.00:2	0/1:24,35:31:59:0.593:2	0/1:24,30:31:54:0.556:2	0/1:24,29:31:53:0.547:2	./.	0/1:0,51:31:51:1.00:2	./.
chr2	234737380	rs72970235	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,30:31:49:0.612:2	./.	./.	./.	./.	./.	./.	./.
chr2	234738356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.
chr2	234740136	rs879665	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,59:31:142:0.415:2	./.	0/1:100,54:31:154:0.351:2	0/1:98,64:31:162:0.395:2	./.	0/1:71,58:32:129:0.450:2	./.
chr2	234740157	rs879664	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,42:31:131:0.321:2	0/1:84,58:30:142:0.408:2	./.	./.	./.
chr2	234741783	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,26:32:61:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr2	234741808	rs2270856	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,43:32:70:0.614:2	./.	./.	./.	./.	0/1:43,25:32:68:0.368:2	./.
chr2	234749258	rs10511	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,51:32:139:0.367:2	0/1:83,75:32:158:0.475:2	./.	./.	./.
chr2	234749354	rs12582	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:31:51:0.529:2	0/1:43,42:30:85:0.494:2	./.	./.	./.
chr2	234749780	rs3821238	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:32:80:0.413:2	0/1:38,48:32:86:0.558:2	./.	./.	./.
chr2	234749783	rs17863822	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2	0/1:14,19:33:33:0.576:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234750542	rs3732215	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:32:15:0.400:2	0/1:3,143:33:148:0.979:2	./.	0/1:0,168:32:168:1.00:2	0/1:91,87:33:178:0.489:2	0/1:70,62:33:132:0.470:2	./.	./.	0/1:88,63:33:151:0.417:2
chr2	234750831	rs3806589	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,57:28:105:0.543:2	0/1:27,24:28:51:0.471:2	0/1:4,7:31:11:0.636:2	0/1:1,100:29:101:0.990:2	0/1:38,39:29:77:0.506:2	0/1:0,95:28:95:1.00:2	0/1:50,35:28:85:0.412:2	0/1:3,115:28:118:0.975:2	./.	0/1:38,45:29:83:0.542:2	0/1:55,47:28:102:0.461:2
chr2	234758500	rs529963	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:2,3:32:5:0.600:2	./.	0/1:2,8:31:10:0.800:2	./.	0/1:10,5:32:15:0.333:2	./.	./.	0/1:5,7:33:12:0.583:2	0/1:5,9:32:14:0.643:2
chr2	234761225	rs2286430	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:31:30:1.00:2	./.	0/1:1,30:31:31:0.968:2	0/1:34,11:33:45:0.244:2	0/1:22,25:32:47:0.532:2	./.	./.	0/1:57,34:33:93:0.374:2
chr2	234762480	rs626110	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,69:32:135:0.511:2	0/1:32,49:32:81:0.605:2	0/1:6,15:31:21:0.714:2	0/1:1,152:31:153:0.993:2	0/1:87,83:31:170:0.488:2	0/1:0,194:31:194:1.00:2	0/1:0,188:31:188:1.00:2	0/1:98,96:31:195:0.495:2	./.	0/1:74,56:31:131:0.431:2	0/1:1,131:31:132:0.992:2
chr2	234854540	rs13004520	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.	0/1:18,21:31:39:0.538:2	./.	./.	./.	./.
chr2	234854550	rs11562975	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:34:10:0.500:2	./.	0/1:30,13:32:43:0.302:2	./.	./.	./.	./.	./.	./.
chr2	234854552	rs17868387	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,31:32:62:0.500:2	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.
chr2	234863788	rs7593557	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,39:31:111:0.351:2	./.	./.	0/1:65,60:31:125:0.480:2	0/1:85,56:31:141:0.397:2	./.	./.	./.
chr2	234905078	rs11563208	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,60:31:117:0.513:2	0/1:47,48:32:95:0.505:2	0/1:14,10:31:24:0.417:2	0/1:95,88:31:183:0.481:2	0/1:103,74:31:177:0.418:2	./.	./.	./.	./.	./.	./.
chr2	234915540	rs11563071	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:32:75:0.493:2	./.	./.	./.	./.
chr2	234926008	rs28902237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234959703	rs150764101	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	./.
chr2	234967539	rs593668	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,41:32:41:1.00:2	./.	0/1:1,72:31:73:0.986:2	0/1:0,59:31:59:1.00:2	./.	0/1:2,57:32:59:0.966:2	0/1:0,85:32:85:1.00:2	0/1:48,33:33:81:0.407:2	0/1:24,18:33:42:0.429:2	0/1:42,48:31:91:0.533:2
chr2	234978658	rs6716659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:32:60:0.400:2
chr2	235949877	rs3731644	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:29:29:0.345:2	./.	0/1:15,15:27:30:0.500:2	./.	./.	./.	./.	./.
chr2	235949920	rs3731645	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,16:28:30:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr2	235950002	rs3731646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,33:32:73:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr2	235950187	rs1469375	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:30:6:0.500:2	0/1:0,32:28:32:1.00:2	0/1:22,15:29:37:0.405:2	0/1:13,16:25:29:0.552:2	0/1:0,53:28:53:1.00:2	0/1:30,29:29:59:0.492:2	./.	0/1:21,14:29:35:0.400:2	0/1:0,40:29:40:1.00:2
chr2	235950284	rs3731648	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,17:29:60:0.283:2	./.	./.	./.	./.	./.	./.	./.
chr2	235950391	rs35039245	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:29:33:0.364:2	./.
chr2	235950451	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:31:18:0.556:2	./.
chr2	235951819	rs3795962	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,19:32:20:0.950:2	0/1:0,162:32:162:1.00:2	0/1:0,96:32:96:1.00:2	0/1:78,86:32:164:0.524:2	0/1:0,160:32:160:1.00:2	0/1:93,78:32:171:0.456:2	./.	0/1:55,59:32:114:0.518:2	0/1:0,130:32:130:1.00:2
chr2	236433161	rs62191529	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.	./.	0/1:72,43:32:115:0.374:2	0/1:49,63:32:112:0.563:2	0/1:4,133:32:137:0.971:2	./.	0/1:2,83:32:85:0.976:2	0/1:53,42:33:95:0.442:2
chr2	236433187	rs115022664	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,38:28:69:0.551:2
chr2	236617869	rs8178995	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,46:32:94:0.489:2
chr2	236685678	rs62190872	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,52:32:98:0.531:2	0/1:59,71:33:130:0.546:2
chr2	236691982	rs1878154	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:80,66:32:146:0.452:2	0/1:35,37:32:72:0.514:2	0/1:9,8:32:17:0.471:2	./.	./.	0/1:2,127:32:129:0.984:2	0/1:87,55:33:142:0.387:2	./.	./.	./.	./.
chr2	236708166	rs2292708	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,17:33:40:0.425:2	0/1:19,8:32:27:0.296:2	0/1:4,3:33:7:0.429:2	./.	./.	0/1:0,57:32:57:1.00:2	0/1:25,21:32:46:0.457:2	./.	./.	./.	./.
chr2	236761396	rs13006916	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:94,85:32:179:0.475:2	0/1:63,59:32:122:0.484:2	0/1:21,17:30:38:0.447:2	./.	./.	0/1:0,158:31:158:1.00:2	0/1:1,148:32:149:0.993:2	./.	0/1:0,160:32:160:1.00:2	0/1:75,55:32:130:0.423:2	./.
chr2	236817542	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2
chr2	236877171	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,7:20:67:0.109:2	./.	./.	./.
chr2	236877183	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:25:49:0.102:2	./.	./.	./.	./.	./.
chr2	236957822	rs2034648	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,54:31:110:0.495:2	0/1:58,31:32:89:0.348:2	0/1:1,16:31:17:0.941:2	0/1:65,78:30:143:0.545:2	0/1:122,67:31:190:0.354:2	0/1:103,70:31:173:0.405:2	0/1:178,5:31:183:0.027:2	0/1:91,91:31:182:0.500:2	0/1:2,135:32:137:0.985:2	0/1:71,60:31:131:0.458:2	0/1:85,65:31:150:0.433:2
chr2	237032607	rs11895915	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,23:30:57:0.404:2	0/1:0,61:30:61:1.00:2	./.	./.	0/1:0,38:30:38:1.00:2	./.	./.
chr2	237032703	rs8178994	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,67:32:142:0.472:2	0/1:1,100:31:102:0.990:2	./.	./.	0/1:0,78:33:78:1.00:2	./.	./.
chr2	237075031	rs113549935	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:30:56:0.393:2	0/1:18,23:31:41:0.561:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	237076096	rs112186240	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:34:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:36:5:0.600:2	./.	./.
chr2	237103548	rs10177825	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,39:32:80:0.488:2	0/1:34,17:31:51:0.333:2	0/1:8,8:32:16:0.500:2	./.	./.	0/1:62,32:30:94:0.340:2	./.	./.	0/1:52,46:32:98:0.469:2	0/1:73,52:32:125:0.416:2	./.
chr2	237103623	rs10166966	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:53,40:32:93:0.430:2	0/1:32,19:32:51:0.373:2	0/1:8,8:32:16:0.500:2	./.	./.	0/1:89,40:32:129:0.310:2	./.	./.	0/1:62,52:33:114:0.456:2	0/1:77,59:32:136:0.434:2	./.
chr2	237103697	rs10177957	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:30,21:30:51:0.412:2	0/1:19,15:32:34:0.441:2	0/1:6,7:30:13:0.538:2	./.	./.	0/1:66,37:30:103:0.359:2	./.	./.	0/1:34,29:32:63:0.460:2	0/1:46,38:31:84:0.452:2	./.
chr2	237149941	rs6756597	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,56:30:104:0.538:2	0/1:1,72:30:73:0.986:2	0/1:36,32:30:68:0.471:2	0/1:55,42:30:97:0.433:2	0/1:1,121:31:122:0.992:2	./.	0/1:29,38:31:68:0.567:2	./.
chr2	237246905	rs115960780	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,41:30:80:0.513:2	0/1:15,10:30:25:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	237252380	rs188950411	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,17:31:51:0.333:2	./.
chr2	237300677	rs10204742	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,54:33:122:0.443:2	./.
chr2	237374309	rs35432941	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,57:32:104:0.548:2	0/1:54,53:31:107:0.495:2	./.	./.	0/1:86,65:31:151:0.430:2
chr2	237402432	rs143813700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:33:50:0.520:2	./.	./.
chr2	237406091	rs113638946	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:31:8:0.375:2	0/1:34,22:32:56:0.393:2	./.	./.	./.	./.	./.	./.	./.
chr2	237489297	rs35767135	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,42:32:90:0.467:2	0/1:23,31:32:54:0.574:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	237489904	rs1045879	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:65,58:31:123:0.472:2	0/1:56,25:31:81:0.309:2	./.	0/1:99,79:31:178:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr2	237995822	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	0/1:145,4:34:149:0.027:2	./.	./.
chr2	237996106	rs6740125	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:32:93:0.430:2
chr2	237997230	rs57864418	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,35:31:92:0.380:2
chr2	238005457	rs73999622	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,51:31:99:0.515:2
chr2	238166147	rs4377288	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,18:33:33:0.545:2	0/1:9,11:33:20:0.550:2	./.	0/1:0,31:33:31:1.00:2	./.	0/1:15,19:32:34:0.559:2	0/1:14,12:32:26:0.462:2	0/1:7,14:33:21:0.667:2	./.	./.	0/1:0,40:33:40:1.00:2
chr2	238233410	rs4663722	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.	./.	./.	0/1:43,14:31:57:0.246:2	./.	./.	0/1:20,20:33:40:0.500:2
chr2	238233483	rs13032404	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,17:28:33:0.515:2	0/1:0,19:29:19:1.00:2	0/1:8,18:30:26:0.692:2	0/1:8,20:29:28:0.714:2	./.	0/1:7,9:32:16:0.563:2	./.
chr2	238243285	rs2270671	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,30:32:60:0.500:2	0/1:20,18:32:38:0.474:2	./.	0/1:51,48:32:99:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr2	238243292	rs1131296	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,36:31:70:0.514:2	0/1:23,19:32:42:0.452:2	0/1:8,3:30:11:0.273:2	./.	0/1:61,39:31:100:0.390:2	0/1:0,104:31:104:1.00:2	0/1:79,57:32:136:0.419:2	0/1:70,57:31:127:0.449:2	./.	./.	0/1:42,35:32:77:0.455:2
chr2	238243464	rs2270669	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,54:32:54:1.00:2	0/1:14,7:32:21:0.333:2	0/1:2,149:32:151:0.987:2	0/1:0,101:32:101:1.00:2	0/1:0,124:32:125:1.00:2	0/1:0,125:32:125:1.00:2	0/1:67,60:32:127:0.472:2	0/1:0,115:33:115:1.00:2	./.	0/1:72,59:31:131:0.450:2
chr2	238244781	rs11690358	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,34:29:82:0.415:2	0/1:49,53:30:102:0.520:2	./.	0/1:64,59:30:123:0.480:2	./.	0/1:0,78:30:79:1.00:2	./.	./.
chr2	238244923	rs11683438	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,25:31:44:0.568:2	0/1:21,22:31:43:0.512:2	./.	0/1:26,18:32:44:0.409:2	./.	0/1:0,41:32:41:1.00:2	./.	./.
chr2	238244963	rs6728818	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,48:27:48:1.00:2	0/1:0,24:28:24:1.00:2	./.	0/1:0,45:29:45:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,48:28:48:1.00:2	0/1:16,23:28:39:0.590:2	0/1:0,50:29:50:1.00:2	./.	0/1:27,17:27:44:0.386:2
chr2	238249108	rs61729844	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,31:30:68:0.456:2	0/1:17,29:29:46:0.630:2	./.	0/1:24,25:31:49:0.510:2	./.	0/1:1,53:31:54:0.981:2	./.	./.
chr2	238249630	rs4433949	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:68,95:32:163:0.583:2	0/1:68,53:32:121:0.438:2	0/1:16,11:31:27:0.407:2	./.	0/1:97,94:31:191:0.492:2	0/1:2,193:31:195:0.990:2	0/1:107,88:31:195:0.451:2	0/1:94,98:32:192:0.510:2	./.	./.	0/1:111,81:32:192:0.422:2
chr2	238249717	rs34558385	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,73:28:137:0.537:2	0/1:80,83:28:164:0.509:2	./.	0/1:62,86:28:150:0.581:2	./.	./.	./.	./.
chr2	238253149	rs2646258	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:104,75:32:179:0.419:2	0/1:81,57:32:138:0.413:2	./.	0/1:98,81:32:179:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr2	238253152	rs34181055	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,85:31:172:0.494:2	0/1:113,61:32:174:0.351:2	./.	./.	./.	0/1:90,94:32:184:0.511:2	./.	./.
chr2	238253403	rs150165484	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:33:12:0.667:2	./.	./.	./.	./.	./.
chr2	238257013	rs2646265	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,20:32:30:0.667:2	0/1:9,11:32:20:0.550:2	./.	0/1:19,10:32:29:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr2	238258814	rs3790993	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,30:32:71:0.423:2	0/1:21,11:34:32:0.344:2	0/1:5,3:32:8:0.375:2	./.	0/1:30,23:32:53:0.434:2	0/1:0,49:32:49:1.00:2	0/1:26,35:31:61:0.574:2	0/1:55,32:32:87:0.368:2	./.	./.	0/1:19,19:30:38:0.500:2
chr2	238267717	rs2646254	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:63,44:31:107:0.411:2	0/1:40,38:31:78:0.487:2	./.	0/1:49,55:30:104:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr2	238277573	rs2645774	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,22:27:43:0.524:2	0/1:12,16:31:28:0.571:2	./.	0/1:19,22:29:42:0.537:2	0/1:16,7:24:23:0.304:2	./.	./.	0/1:22,10:29:32:0.313:2	0/1:17,22:27:39:0.564:2	./.	./.
chr2	238277795	rs2646260	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,13:31:19:0.684:2	0/1:6,5:31:11:0.455:2	./.	0/1:13,11:31:24:0.458:2	0/1:13,10:30:23:0.435:2	./.	0/1:11,7:28:18:0.389:2	0/1:14,10:32:24:0.417:2	0/1:12,11:31:23:0.478:2	./.	./.
chr2	238280330	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:33:26:0.538:2
chr2	238280553	rs35114079	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,23:30:65:0.354:2	./.	./.	./.	./.	./.	./.	./.
chr2	238283605	rs12622093	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,16:31:41:0.390:2	0/1:7,14:32:21:0.667:2	./.	0/1:37,19:30:56:0.339:2	0/1:31,24:30:55:0.436:2	./.	./.	0/1:34,26:31:60:0.433:2	0/1:28,11:32:39:0.282:2	./.	./.
chr2	238290066	rs112896869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:32:11:0.727:2	./.	./.	./.
chr2	238303832	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	238343299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:35:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	238427194	rs3751109	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,104:29:176:0.591:2	./.	0/1:101,85:30:186:0.457:2	./.	./.	./.
chr2	238427251	rs3751107	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,60:31:117:0.513:2	./.	0/1:56,49:30:105:0.467:2	./.	./.	./.
chr2	238434249	rs2292881	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,56:30:56:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	238434434	rs11883500	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	0/1:37,27:30:64:0.422:2	./.	0/1:27,34:31:61:0.557:2	./.	./.	./.
chr2	238443226	rs2292884	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,148:29:151:0.980:2	./.	0/1:96,76:30:173:0.442:2	./.	0/1:97,95:29:192:0.495:2	./.	./.	./.
chr2	238449007	rs3817362	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,103:30:105:0.981:2	./.	./.	./.	./.	./.	./.	./.
chr2	238449023	rs3817363	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,104:29:106:0.981:2	./.	./.	./.	./.	./.	./.	./.
chr2	238449107	rs2271809	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:31:42:1.00:2	./.	0/1:38,39:32:77:0.506:2	./.	0/1:35,42:32:77:0.545:2	./.	./.	./.
chr2	238451284	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,58:32:114:0.509:2	./.	./.	./.
chr2	238483164	rs6766	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	0/1:42,26:31:68:0.382:2	./.	0/1:60,44:31:105:0.423:2	./.	./.	./.
chr2	238483671	rs59945834	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	0/1:38,84:31:122:0.689:2	./.	./.	./.
chr2	238483729	rs2280289	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:34:11:0.455:2	./.	./.	./.	./.	0/1:74,72:32:146:0.493:2	./.	./.	./.
chr2	238484028	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.	./.	./.	./.	./.
chr2	238485251	rs72990117	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:25:11:0.455:2	./.	./.	./.	./.	0/1:61,60:29:121:0.496:2	./.	./.	./.
chr2	238485256	rs75983679	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,62:30:113:0.554:2	./.	./.	./.	./.	./.
chr2	238486767	rs11542159	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:30:60:0.383:2	./.	./.	./.	./.	./.
chr2	238494136	rs2325809	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,5:23:35:0.143:2	./.	./.	./.
chr2	238494161	rs13414922	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:30:12:0.667:2	0/1:26,54:30:80:0.675:2	./.	0/1:24,49:30:73:0.671:2	./.	./.	./.	./.	./.
chr2	238494681	rs34052613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,61:32:155:0.394:2	./.	./.	./.
chr2	238494742	rs3751112	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:50,53:32:103:0.515:2	./.	0/1:39,35:30:74:0.473:2	./.	./.	./.	./.	./.
chr2	238499866	rs114742872	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,14:29:80:0.175:2	./.	0/1:95,21:29:116:0.181:2	./.	./.	./.	0/1:65,7:31:72:0.097:2	./.
chr2	238499874	rs2292870	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,36:32:133:0.271:2	./.	0/1:73,37:32:110:0.336:2	./.
chr2	238500642	rs10084167	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:31:27:0.593:2	./.	0/1:4,10:31:14:0.714:2	./.	0/1:12,7:30:19:0.368:2	./.	0/1:5,4:32:9:0.444:2	./.
chr2	238500653	rs191483018	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.
chr2	238503559	rs2325806	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,12:28:37:0.324:2	./.	0/1:3,126:29:129:0.977:2	0/1:100,60:29:161:0.375:2	0/1:126,51:29:178:0.288:2	0/1:84,99:29:183:0.541:2	0/1:108,77:29:185:0.416:2	0/1:94,76:29:170:0.447:2	0/1:105,77:29:182:0.423:2
chr2	238503561	rs75477617	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,11:30:37:0.306:2	./.	0/1:80,51:29:131:0.389:2	0/1:101,61:29:162:0.377:2	0/1:129,50:29:179:0.279:2	./.	./.	./.	./.
chr2	238503624	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:32:108:0.056:2
chr2	238626378	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.
chr2	238641002	rs6720481	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,63:32:175:0.360:2	./.	./.	./.	./.	./.	./.
chr2	238642460	rs201910589	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,48:32:87:0.552:2	./.
chr2	238643907	rs3769078	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:30:12:0.667:2	./.	./.	./.	./.	./.	./.	0/1:34,22:31:56:0.393:2	./.
chr2	238668783	rs3213869	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,26:30:60:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr2	238668802	rs3213868	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:31:18:0.444:2	0/1:35,28:30:63:0.444:2	./.	./.	./.	./.	./.	0/1:35,34:30:69:0.493:2	./.
chr2	238671290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.
chr2	238671328	rs868119	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:34:21:0.476:2	./.	./.	./.	./.	./.	./.	0/1:110,83:33:194:0.430:2	./.
chr2	238672425	rs11680012	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,74:29:155:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr2	238672703	rs3739038	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:33:10:0.400:2	0/1:55,49:33:104:0.471:2	./.	./.	./.	./.	./.	0/1:41,39:32:80:0.488:2	./.
chr2	238729962	rs185367509	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,11:29:39:0.282:2	./.	./.	./.	./.	./.
chr2	238733016	rs4663795	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	0/1:54,20:32:74:0.270:2	./.
chr2	238820379	rs61758799	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,91:31:160:0.569:2	./.	./.	./.	./.	./.	./.
chr2	238820380	rs61752232	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,48:33:107:0.449:2	0/1:42,27:32:69:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	238903399	rs12615308	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,50:30:112:0.446:2	0/1:80,34:31:114:0.298:2	./.	0/1:49,40:31:89:0.449:2	0/1:55,45:31:100:0.450:2	./.
chr2	238911983	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chr2	238969964	rs2250185	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,18:32:46:0.391:2	0/1:18,12:31:30:0.400:2	./.	./.	0/1:41,11:29:52:0.212:2	0/1:30,24:29:54:0.444:2	0/1:30,20:30:50:0.400:2	./.	0/1:23,31:31:54:0.574:2	0/1:34,23:28:57:0.404:2	./.
chr2	238990388	rs3210400	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:25:7:0.429:2	0/1:0,104:31:104:1.00:2	0/1:80,79:31:159:0.497:2	./.	0/1:64,72:31:136:0.529:2	0/1:57,64:30:121:0.529:2	./.	0/1:62,40:31:102:0.392:2	0/1:42,48:31:90:0.533:2
chr2	238991663	rs112310414	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:31:16:0.688:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	238991733	rs2243417	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,33:32:62:0.532:2	0/1:22,16:32:38:0.421:2	./.	./.	0/1:36,39:32:75:0.520:2	0/1:35,35:31:70:0.500:2	0/1:26,31:31:57:0.544:2	./.	0/1:39,25:32:64:0.391:2	0/1:34,13:31:47:0.277:2	./.
chr2	238991796	rs2278742	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,68:29:137:0.496:2	0/1:41,33:30:74:0.446:2	0/1:1,15:28:17:0.938:2	0/1:3,141:29:144:0.979:2	0/1:66,67:28:133:0.504:2	0/1:79,83:28:162:0.512:2	0/1:91,61:29:152:0.401:2	0/1:2,146:29:149:0.986:2	./.	0/1:70,58:29:128:0.453:2	0/1:95,73:28:169:0.435:2
chr2	238999883	rs1128552	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:73,67:30:140:0.479:2	0/1:65,41:29:106:0.387:2	0/1:14,7:31:21:0.333:2	./.	./.	0/1:104,95:30:199:0.477:2	./.	0/1:99,89:30:188:0.473:2	0/1:105,83:31:188:0.441:2	./.	0/1:109,83:29:192:0.432:2
chr2	239006879	rs12993309	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	0/1:4,12:32:16:0.750:2
chr2	239006891	rs35544137	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,17:29:27:0.630:2	./.	./.	./.	./.	./.	./.	./.
chr2	239007991	rs15787	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:0,61:31:61:1.00:2	0/1:26,20:31:46:0.435:2	./.	0/1:23,20:32:43:0.465:2	0/1:24,23:31:47:0.489:2	0/1:30,31:33:61:0.508:2	0/1:23,28:33:51:0.549:2	0/1:0,80:32:81:1.00:2
chr2	239009336	rs61744770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	239010623	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:26:48:0.083:2	./.	./.
chr2	239010690	rs34878344	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.
chr2	239010719	rs36066915	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	0/1:7,4:30:11:0.364:2	0/1:0,6:32:6:1.00:2	./.	./.
chr2	239016539	rs935415	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:33:145:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,27:31:27:1.00:2	0/1:1,157:33:160:0.994:2	0/1:107,89:32:196:0.454:2	0/1:0,171:32:171:1.00:2	0/1:116,74:32:190:0.389:2	0/1:1,174:32:175:0.994:2	0/1:0,176:33:176:1.00:2	0/1:94,73:32:167:0.437:2	0/1:1,155:32:157:0.994:2
chr2	239025630	rs11904159	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,48:26:100:0.480:2	./.	0/1:56,47:27:103:0.456:2	./.	./.	./.	./.
chr2	239025645	rs11897736	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,38:30:82:0.463:2	./.	0/1:37,29:30:66:0.439:2	./.	./.	./.	./.
chr2	239036270	rs13382446	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,88:32:196:0.449:2	./.	0/1:122,70:32:192:0.365:2	./.	./.	./.	./.
chr2	239037438	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,13:31:15:0.867:2	./.	./.	./.
chr2	239038912	rs57813708	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,53:32:108:0.491:2	./.	0/1:46,29:32:75:0.387:2
chr2	239039057	rs13033248	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,2:33:3:0.667:2	0/1:0,2:33:2:1.00:2	./.	0/1:1,3:31:4:0.750:2	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.
chr2	239039075	rs13006204	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,4:33:7:0.571:2	0/1:0,2:33:2:1.00:2	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	0/1:1,2:32:3:0.667:2	0/1:4,2:35:6:0.333:2	0/1:1,2:32:3:0.667:2	./.
chr2	239039183	rs73102303	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:32:30:0.567:2	./.	./.	./.	./.
chr2	239039312	rs76758152	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.
chr2	239039637	rs4663845	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:24:4:1.00:2	0/1:0,3:26:3:1.00:2	./.	./.	0/1:4,9:27:13:0.692:2	0/1:9,6:28:15:0.400:2	0/1:0,6:27:6:1.00:2	0/1:6,5:28:11:0.455:2	./.	./.	./.
chr2	239039841	rs10172220	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:27:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239039896	rs10182906	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:33,29:30:62:0.468:2	0/1:40,53:30:93:0.570:2	0/1:18,40:30:58:0.690:2	0/1:0,83:30:83:1.00:2	0/1:42,50:30:92:0.543:2	0/1:36,42:31:78:0.538:2	0/1:14,15:30:29:0.517:2	0/1:17,15:28:32:0.469:2
chr2	239039981	rs149541007	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,42:32:91:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr2	239040187	rs12692215	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	./.	0/1:5,9:33:14:0.643:2	0/1:1,7:33:8:0.875:2	0/1:6,5:33:11:0.455:2	0/1:13,16:32:29:0.552:2	0/1:1,4:33:5:0.800:2	./.
chr2	239040218	rs73102309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.
chr2	239040343	rs73102311	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,34:31:87:0.391:2	./.	./.	./.	./.
chr2	239049540	rs2241985	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,17:31:34:0.500:2	0/1:7,8:31:15:0.533:2	./.	0/1:18,11:32:29:0.379:2	0/1:15,5:32:20:0.250:2	./.	./.	0/1:9,10:32:19:0.526:2	0/1:0,32:33:32:1.00:2	0/1:10,12:30:22:0.545:2	0/1:5,10:31:15:0.667:2
chr2	239049602	rs147827992	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,31:29:87:0.356:2	0/1:20,17:31:37:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239049822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,6:30:96:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr2	239050033	rs12692216	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:26:5:0.600:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.
chr2	239051550	rs935411	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:29:102:1.00:2	0/1:0,68:29:68:1.00:2	0/1:15,12:28:27:0.444:2	0/1:1,178:30:179:0.994:2	0/1:102,86:29:188:0.457:2	0/1:99,86:29:185:0.465:2	0/1:0,120:29:120:1.00:2	0/1:114,78:28:192:0.406:2	0/1:1,176:30:177:0.994:2	0/1:0,149:30:149:1.00:2	0/1:0,119:29:120:1.00:2
chr2	239059484	rs7605194	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,25:31:56:0.446:2	0/1:11,14:30:25:0.560:2	./.	0/1:0,67:30:67:1.00:2	0/1:102,33:30:135:0.244:2	0/1:44,31:31:75:0.413:2	0/1:41,13:28:54:0.241:2	0/1:78,51:29:129:0.395:2	0/1:0,66:31:66:1.00:2	0/1:30,5:31:35:0.143:2	0/1:19,12:31:31:0.387:2
chr2	239077013	rs192936436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,59:31:135:0.437:2	./.	./.	./.	./.	./.	./.	./.
chr2	239079542	rs2278737	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,39:32:77:0.506:2	0/1:19,29:32:48:0.604:2	0/1:3,7:34:10:0.700:2	./.	0/1:51,53:32:104:0.510:2	0/1:51,62:32:113:0.549:2	0/1:34,35:33:69:0.507:2	0/1:75,62:32:137:0.453:2	./.	0/1:49,56:32:105:0.533:2	./.
chr2	239098594	rs34371548	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:33:85:0.365:2	./.	./.	./.	./.
chr2	239133980	rs7558525	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,32:32:68:0.471:2	0/1:19,16:32:35:0.457:2	./.	0/1:41,40:31:81:0.494:2	0/1:21,33:31:54:0.611:2	0/1:0,87:31:87:1.00:2	0/1:30,23:31:53:0.434:2	0/1:1,72:32:73:0.986:2	0/1:0,71:32:71:1.00:2	./.	0/1:16,21:31:37:0.568:2
chr2	239134056	rs7572285	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,28:31:62:0.452:2	0/1:14,10:29:24:0.417:2	./.	0/1:76,40:32:116:0.345:2	0/1:60,54:31:114:0.474:2	0/1:0,96:31:96:1.00:2	0/1:82,32:31:114:0.281:2	0/1:4,86:32:90:0.956:2	0/1:1,89:32:90:0.989:2	./.	0/1:0,78:31:78:1.00:2
chr2	239134063	rs7584376	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,27:31:63:0.429:2	0/1:13,10:32:23:0.435:2	./.	0/1:72,39:31:111:0.351:2	0/1:57,51:31:108:0.472:2	0/1:1,91:30:92:0.989:2	0/1:75,33:30:108:0.306:2	0/1:3,89:31:92:0.967:2	0/1:0,93:32:93:1.00:2	./.	0/1:41,35:31:76:0.461:2
chr2	239134138	rs7572392	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:31:18:0.444:2	0/1:6,5:32:11:0.455:2	./.	0/1:23,9:32:32:0.281:2	0/1:16,13:30:29:0.448:2	0/1:0,28:29:28:1.00:2	0/1:20,8:31:28:0.286:2	0/1:3,27:31:30:0.900:2	0/1:0,28:31:28:1.00:2	./.	0/1:27,17:29:44:0.386:2
chr2	239139883	rs13425452	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,31:32:66:0.470:2	0/1:21,13:33:34:0.382:2	0/1:3,4:32:7:0.571:2	0/1:34,33:31:67:0.493:2	0/1:0,59:32:59:1.00:2	0/1:0,52:32:52:1.00:2	0/1:29,21:31:50:0.420:2	0/1:1,49:32:50:0.980:2	0/1:0,60:33:60:1.00:2	./.	0/1:40,34:32:74:0.459:2
chr2	239140638	rs13419960	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:30:21:0.250:2	./.	0/1:41,32:27:73:0.438:2	./.	./.	./.	./.	./.	./.
chr2	239140682	rs13419980	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:32:16:0.250:2	./.	0/1:48,33:30:81:0.407:2	./.	./.	./.	./.	./.	./.
chr2	239140727	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.
chr2	239140728	rs11689033	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,23:32:72:0.319:2	0/1:25,20:32:45:0.444:2	./.	0/1:58,60:33:118:0.508:2	0/1:28,28:30:56:0.500:2	0/1:0,104:32:104:1.00:2	0/1:36,27:32:63:0.429:2	0/1:1,92:32:93:0.989:2	0/1:2,98:33:100:0.980:2	./.	0/1:48,55:33:103:0.534:2
chr2	239141152	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239141157	rs115643647	G	T,A	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant11	GT:BQ:DP:FA:SS	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/2:31:63:0.063:2	0/1:30:12:0.583:2	./.	0/1:32:63:0.397:2	./.	./.	./.	./.	./.	./.
chr2	239141174	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239141221	rs11694487	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,42:30:102:0.412:2	0/1:40,22:31:62:0.355:2	0/1:7,5:32:12:0.417:2	0/1:61,43:30:104:0.413:2	0/1:2,65:29:67:0.970:2	0/1:2,100:29:102:0.980:2	0/1:38,24:29:62:0.387:2	0/1:5,90:29:95:0.947:2	0/1:1,117:31:119:0.992:2	./.	0/1:59,50:30:109:0.459:2
chr2	239155053	rs934945	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,28:31:82:0.341:2	0/1:38,16:30:54:0.296:2	0/1:53,28:31:81:0.346:2	./.	./.	0/1:1,82:31:83:0.988:2	./.	./.
chr2	239157721	rs35873326	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,21:31:42:0.500:2	./.	./.	./.	./.	./.	0/1:9,16:31:25:0.640:2
chr2	239162318	rs10195959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:33:65:0.477:2
chr2	239165663	rs2304669	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,20:29:41:0.488:2	0/1:22,15:28:37:0.405:2	./.	./.	./.	0/1:27,39:29:66:0.591:2	0/1:44,29:28:73:0.397:2	0/1:0,60:29:60:1.00:2	./.	./.	0/1:24,20:27:44:0.455:2
chr2	239167209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.
chr2	239170873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	239181810	rs142139283	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,47:31:110:0.427:2	./.	./.	./.	./.
chr2	239229372	rs13398676	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,22:32:46:0.478:2	0/1:10,11:31:21:0.524:2	0/1:2,3:32:5:0.600:2	0/1:29,33:32:62:0.532:2	0/1:31,32:30:63:0.508:2	0/1:0,59:31:60:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,71:31:71:1.00:2	0/1:1,38:33:39:0.974:2	./.	0/1:12,18:31:30:0.600:2
chr2	239237388	rs61742338	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:7:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239237751	rs3769110	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2
chr2	239237953	rs12464423	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:25:4:0.750:2	./.	./.	0/1:1,48:30:49:0.980:2	0/1:21,16:29:37:0.432:2	./.	0/1:23,28:32:51:0.549:2	./.	./.
chr2	239237974	rs17854985	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:28:32:0.594:2
chr2	239253224	rs58277463	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,32:31:88:0.364:2
chr2	239261866	rs3213874	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,56:32:129:0.434:2	0/1:40,31:32:71:0.437:2	./.	0/1:85,93:32:178:0.522:2	0/1:104,89:31:193:0.461:2	./.	0/1:120,71:33:191:0.372:2	0/1:1,185:32:186:0.995:2	0/1:89,92:33:181:0.508:2	./.	./.
chr2	239344412	rs3191996	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,41:31:79:0.519:2	0/1:20,19:31:39:0.487:2	./.	0/1:41,38:31:80:0.481:2	./.	./.	./.	./.	./.	0/1:32,32:30:64:0.500:2	./.
chr2	240003813	rs61754649	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:31:103:0.476:2	./.	./.	./.	./.
chr2	240003870	rs1063639	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,83:30:137:0.606:2	0/1:25,39:31:64:0.609:2	0/1:17,14:29:31:0.452:2	./.	0/1:0,191:30:191:1.00:2	./.	./.	0/1:0,192:30:192:1.00:2	./.	0/1:0,159:30:159:1.00:2	0/1:1,145:30:146:0.993:2
chr2	240011717	rs61752234	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,64:30:151:0.424:2	./.	0/1:80,65:30:145:0.448:2	./.	./.	./.	./.	./.
chr2	240016771	rs2279273	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:32:52:0.538:2
chr2	240033247	rs146056747	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,55:29:113:0.487:2	./.	./.	./.
chr2	240033391	rs148813865	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,30:30:63:0.476:2	./.	./.	./.	./.	./.	./.
chr2	240036848	rs114495208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:30:60:0.467:2	./.	./.	./.	./.	./.
chr2	240036959	rs79199572	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	0/1:10,5:32:15:0.333:2	./.	./.	./.	./.	./.	./.	0/1:20,19:33:39:0.487:2	./.	./.
chr2	240055966	rs35291459	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,10:29:20:0.500:2	./.	./.	./.	0/1:8,9:29:17:0.529:2	./.	0/1:6,5:32:11:0.455:2
chr2	240323661	rs1709851	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,13:31:34:0.382:2	0/1:8,12:32:20:0.600:2	0/1:0,3:22:3:1.00:2	./.	0/1:0,35:30:35:1.00:2	0/1:26,27:30:53:0.509:2	0/1:0,19:31:19:1.00:2	0/1:25,24:30:49:0.490:2	0/1:0,50:32:50:1.00:2	0/1:0,32:30:32:1.00:2	0/1:31,33:31:64:0.516:2
chr2	240500170	rs35846411	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,18:32:48:0.375:2	./.	0/1:14,27:31:41:0.659:2	./.	./.	./.	./.	./.
chr2	240500173	rs10187580	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,33:29:47:0.702:2	0/1:28,14:31:42:0.333:2	0/1:20,27:30:47:0.574:2	0/1:1,46:30:47:0.979:2	0/1:2,54:31:56:0.964:2	0/1:17,13:32:30:0.433:2	0/1:23,12:33:36:0.343:2
chr2	240500249	rs59626274	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,79:30:152:0.523:2	./.	./.	./.	0/1:0,117:31:117:1.00:2	./.	0/1:50,49:30:99:0.495:2
chr2	240500294	rs11683242	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,11:31:17:0.647:2	0/1:99,65:30:164:0.396:2	./.	0/1:76,82:29:158:0.519:2	./.	./.	./.	./.	./.
chr2	240500413	rs6543554	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,43:29:92:0.467:2	0/1:37,21:29:58:0.362:2	0/1:0,13:30:13:1.00:2	0/1:73,55:30:128:0.430:2	0/1:80,79:29:159:0.497:2	0/1:0,116:29:116:1.00:2	0/1:85,70:30:155:0.452:2	0/1:0,147:29:147:1.00:2	0/1:1,128:30:129:0.992:2	0/1:0,112:29:112:1.00:2	0/1:59,67:28:126:0.532:2
chr2	240500437	rs10180205	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,80:32:169:0.473:2	0/1:48,77:31:125:0.616:2	0/1:74,71:32:145:0.490:2	0/1:0,157:32:157:1.00:2	0/1:0,119:33:119:1.00:2	0/1:73,54:32:127:0.425:2	0/1:65,56:31:121:0.463:2
chr2	240684644	rs201083198	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,70:30:177:0.395:2	./.	./.	./.	./.	./.
chr2	240912983	rs73105362	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,96:30:188:0.511:2	0/1:39,45:31:84:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	240921615	rs55992217	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,32:32:53:0.604:2	0/1:32,17:31:49:0.347:2	./.
chr2	240923050	rs1530144	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,4:31:21:0.190:2	0/1:2,116:31:118:0.983:2	./.	0/1:53,52:31:105:0.495:2	./.	./.	0/1:55,68:32:123:0.553:2	./.	./.
chr2	240923124	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	240946766	rs13848	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:34:3:0.667:2	0/1:1,32:33:33:0.970:2	./.	0/1:13,11:30:24:0.458:2	./.	./.	0/1:17,24:34:41:0.585:2	./.	./.
chr2	240957243	rs6746937	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,64:31:120:0.533:2	./.	./.	0/1:85,78:31:163:0.479:2	./.	./.	0/1:1,141:31:142:0.993:2
chr2	240961722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:35:143:0.028:2	./.
chr2	240961728	rs2083411	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,70:33:126:0.560:2	0/1:39,45:33:84:0.536:2	0/1:14,8:32:22:0.364:2	0/1:0,138:33:138:1.00:2	0/1:64,66:32:130:0.508:2	0/1:2,147:33:149:0.987:2	./.	0/1:100,87:33:187:0.465:2	0/1:95,94:34:189:0.497:2	./.	0/1:1,167:33:168:0.994:2
chr2	240969058	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:34:181:0.022:2
chr2	240969265	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,63:32:192:0.328:2	./.	./.	./.	./.	./.	./.
chr2	240969266	rs199979103	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,63:32:195:0.323:2	./.	./.	./.	./.	./.	./.
chr2	240969312	rs10187574	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,15:30:30:0.500:2	0/1:47,140:30:187:0.749:2	./.	0/1:112,77:30:189:0.407:2	./.	./.	0/1:122,66:31:188:0.351:2	./.	./.
chr2	240969456	rs201784423	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:31:20:0.400:2	0/1:99,79:31:178:0.444:2	0/1:143,55:31:198:0.278:2	./.	0/1:124,57:31:181:0.315:2	0/1:114,75:31:189:0.397:2	0/1:139,39:32:178:0.219:2	0/1:85,82:31:167:0.491:2	0/1:153,34:31:187:0.182:2
chr2	240969483	rs145620667	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,6:32:27:0.222:2	0/1:97,92:32:189:0.487:2	./.	0/1:141,47:31:188:0.250:2	./.	./.	0/1:150,33:33:185:0.180:2	./.	./.
chr2	240969640	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,5:31:49:0.102:2	0/1:166,21:31:187:0.112:2	0/1:173,17:31:191:0.089:2	./.	0/1:172,17:32:189:0.090:2	0/1:182,16:33:198:0.081:2	0/1:180,19:32:199:0.095:2	0/1:174,15:31:190:0.079:2	0/1:174,18:32:193:0.094:2
chr2	240969798	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	0/1:69,3:35:72:0.042:2	./.
chr2	240981262	rs6728493	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:24,17:32:41:0.415:2	./.	./.	0/1:34,27:33:61:0.443:2	./.	./.	0/1:20,20:33:40:0.500:2	./.
chr2	240981375	rs6732185	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,48:32:95:0.505:2	0/1:24,28:31:52:0.538:2	0/1:0,14:32:14:1.00:2	0/1:1,103:31:104:0.990:2	0/1:76,82:31:159:0.519:2	./.	0/1:103,71:32:174:0.408:2	0/1:0,165:31:165:1.00:2	0/1:58,44:31:103:0.431:2	0/1:1,66:31:67:0.985:2	0/1:53,54:32:107:0.505:2
chr2	240981464	rs113555849	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,4:28:44:0.091:2	0/1:29,6:26:36:0.171:2	./.	./.	0/1:63,4:27:67:0.060:2	./.	./.	./.	./.	./.	0/1:52,4:26:57:0.071:2
chr2	240981487	rs60617721	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,24:29:55:0.436:2	./.	./.	0/1:31,18:29:49:0.367:2	./.	./.	0/1:25,18:30:43:0.419:2	./.
chr2	240981492	rs141908616	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,5:32:40:0.128:2	./.	./.	./.	0/1:44,5:26:49:0.102:2	./.	./.	./.	0/1:39,4:27:43:0.093:2	./.	0/1:35,5:29:41:0.125:2
chr2	240981515	rs59139800	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:28:33:0.394:2	./.	./.	0/1:23,9:26:32:0.281:2	./.	./.	0/1:18,9:31:27:0.333:2	./.
chr2	240981520	rs28711942	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,6:27:37:0.162:2	0/1:13,6:22:19:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:32:34:0.091:2
chr2	240981528	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:28:34:0.118:2	0/1:32,3:32:36:0.086:2	./.	0/1:29,4:32:33:0.121:2
chr2	240981576	rs28681323	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:32:19:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	240981968	rs368876876	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,5:31:36:0.143:2	./.	./.	0/1:1,4:31:5:0.800:2	./.	0/1:0,2:33:2:1.00:2	./.
chr2	240982009	rs202192655	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:29:76:0.053:2	./.	./.	./.	./.	./.	./.
chr2	240982024	rs74213762	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,5:30:50:0.100:2	0/1:28,8:27:36:0.222:2	./.	./.	./.	0/1:59,6:27:67:0.092:2	0/1:37,5:31:42:0.119:2	./.	0/1:43,4:33:48:0.085:2	./.	0/1:23,6:28:29:0.207:2
chr2	240982047	rs148163158	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,9:25:52:0.173:2	./.	./.	./.	./.	./.	./.	./.
chr2	240982052	rs77588089	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,4:31:40:0.108:2	./.	0/1:39,13:31:52:0.250:2	0/1:112,16:29:128:0.125:2	0/1:83,8:29:93:0.088:2	0/1:59,4:34:63:0.063:2	0/1:53,28:32:81:0.346:2	0/1:53,12:33:66:0.185:2	0/1:27,7:32:34:0.206:2	0/1:36,10:30:46:0.217:2
chr2	240982060	rs201132375	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:30:60:0.067:2	0/1:130,13:26:143:0.091:2	./.	./.	0/1:88,12:25:100:0.120:2	./.	0/1:35,6:31:41:0.146:2	./.
chr2	240982075	rs139834525	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,9:23:66:0.136:2	./.	./.	./.	./.	./.	./.	./.
chr2	240982080	rs143810849	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,9:29:68:0.134:2	0/1:152,8:28:160:0.050:2	0/1:99,6:27:106:0.057:2	./.	0/1:113,9:30:123:0.074:2	0/1:74,11:29:86:0.129:2	0/1:39,4:28:46:0.093:2	0/1:50,6:27:57:0.107:2
chr2	240982103	rs74344384	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,7:25:77:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr2	240982108	rs112152720	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,9:26:187:0.048:2	./.	./.	./.
chr2	240982116	rs72993513	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:14,64:31:78:0.821:2	0/1:109,62:31:171:0.363:2	./.	./.	0/1:24,160:31:185:0.870:2	0/1:64,39:32:103:0.379:2	0/1:12,58:31:70:0.829:2	0/1:55,30:31:85:0.353:2
chr2	240982131	rs79839275	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,60:29:124:0.484:2	./.	./.
chr2	240982228	rs10439373	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,51:31:115:0.459:2	0/1:34,39:30:73:0.534:2	0/1:0,6:31:6:1.00:2	0/1:6,96:31:103:0.941:2	0/1:89,86:30:177:0.491:2	./.	./.	0/1:4,174:31:180:0.978:2	0/1:91,63:32:154:0.409:2	0/1:3,92:31:95:0.968:2	0/1:63,61:31:126:0.492:2
chr2	240982247	rs75044548	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,12:28:108:0.111:2	./.	./.	./.	./.	./.	./.	./.
chr2	240982257	rs62184587	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,51:30:108:0.472:2	0/1:36,28:28:64:0.438:2	./.	0/1:87,17:29:104:0.163:2	./.	./.	0/1:113,10:26:123:0.081:2	./.	./.	0/1:89,9:30:99:0.092:2	./.
chr2	240982271	rs76841013	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,17:28:92:0.185:2	./.	./.	0/1:104,9:29:113:0.080:2	./.	./.	0/1:78,8:31:86:0.093:2	./.
chr2	240984789	rs12465491	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:29:20:0.300:2	0/1:99,92:30:191:0.482:2	./.	./.	0/1:85,103:30:188:0.548:2	./.	./.	0/1:82,71:30:153:0.464:2	./.
chr2	240984827	rs72993519	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,81:27:192:0.422:2	./.	./.	./.	./.	./.
chr2	240984833	rs13389099	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,15:32:28:0.556:2	0/1:91,96:32:187:0.513:2	0/1:90,102:31:192:0.531:2	./.	./.	0/1:7,176:31:183:0.962:2	0/1:101,84:32:185:0.454:2	0/1:92,99:32:191:0.518:2	0/1:87,78:32:165:0.473:2
chr2	240984955	rs201011599	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,34:29:178:0.191:2	./.	0/1:175,17:25:192:0.089:2	./.	./.	0/1:175,16:30:191:0.084:2	./.	./.
chr2	240985099	rs150098707	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:31:24:0.417:2	0/1:95,92:31:187:0.492:2	0/1:138,44:31:182:0.242:2	./.	0/1:123,69:31:192:0.359:2	0/1:85,96:30:182:0.530:2	0/1:124,54:32:178:0.303:2	0/1:66,88:31:154:0.571:2	0/1:116,57:31:173:0.329:2
chr2	240985126	rs199947939	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,3:30:19:0.158:2	0/1:106,80:32:186:0.430:2	./.	0/1:148,41:31:189:0.217:2	./.	./.	0/1:157,31:32:188:0.165:2	./.	./.
chr2	240985347	rs13030992	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:30:17:1.00:2	0/1:125,36:31:161:0.224:2	0/1:120,35:30:156:0.226:2	./.	0/1:135,45:30:180:0.250:2	0/1:112,37:31:149:0.248:2	0/1:135,40:31:175:0.229:2	0/1:100,36:31:136:0.265:2	0/1:112,32:30:144:0.222:2
chr2	241066201	rs74526284	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,61:32:158:0.386:2	./.	./.	./.	./.	./.
chr2	241066280	rs4292120	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,99:31:102:0.971:2	0/1:74,61:30:135:0.452:2	0/1:0,80:31:80:1.00:2	0/1:71,43:31:114:0.377:2	0/1:91,45:31:136:0.331:2	0/1:78,48:32:126:0.381:2	0/1:1,90:31:91:0.989:2	0/1:75,48:30:123:0.390:2
chr2	241066313	rs79464938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:29:58:0.431:2	./.	./.	./.	./.	./.
chr2	241069348	rs115914450	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,103:31:182:0.566:2	./.	./.	./.	./.
chr2	241069410	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,12:32:132:0.091:2	./.	./.	./.
chr2	241070438	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2
chr2	241392491	rs4268920	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.
chr2	241395503	rs2292832	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,3:28:3:1.00:2	./.
chr2	241397487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.	./.
chr2	241401661	rs150046174	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:31:72:0.500:2	./.	./.	./.
chr2	241401741	rs1042829	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,41:31:77:0.532:2	0/1:12,18:31:30:0.600:2	./.	./.	0/1:43,54:30:97:0.557:2	./.	./.	0/1:0,111:31:111:1.00:2	./.	./.	./.
chr2	241404317	rs2229458	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,32:31:32:1.00:2	0/1:10,15:31:25:0.600:2	0/1:8,17:30:25:0.680:2	0/1:1,16:32:17:0.941:2	./.	0/1:0,26:32:26:1.00:2	0/1:0,21:31:21:1.00:2	0/1:1,16:30:17:0.941:2
chr2	241404499	rs2228327	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,70:31:70:1.00:2	0/1:30,34:31:64:0.531:2	0/1:34,28:30:62:0.452:2	0/1:2,62:31:64:0.969:2	./.	0/1:0,39:33:39:1.00:2	./.	0/1:19,12:31:31:0.387:2
chr2	241405479	rs1126920	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,29:31:73:0.397:2	./.	./.	0/1:47,45:31:92:0.489:2	./.	./.	./.
chr2	241405485	rs2228330	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,65:29:65:1.00:2	0/1:30,30:29:60:0.500:2
chr2	241405528	rs2228331	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:28:20:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,99:27:99:1.00:2	0/1:79,54:28:133:0.406:2	0/1:0,71:28:71:1.00:2	0/1:80,48:28:128:0.375:2	0/1:1,77:29:78:0.987:2	0/1:0,71:28:71:1.00:2	0/1:0,56:28:56:1.00:2
chr2	241405608	rs1042841	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,56:31:126:0.444:2	./.	./.	0/1:93,43:31:136:0.316:2	./.	./.	./.
chr2	241419090	rs73010211	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:30:22:0.409:2	./.	./.
chr2	241420373	rs147804085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:32:56:0.482:2
chr2	241451350	rs10427348	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,12:33:23:0.522:2	0/1:13,6:29:19:0.316:2	0/1:0,3:33:3:1.00:2	0/1:29,11:32:40:0.275:2	0/1:30,25:32:55:0.455:2	./.	./.	0/1:21,15:33:36:0.417:2	0/1:16,10:34:26:0.385:2	./.	./.
chr2	241451351	rs35044862	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:33:27:0.519:2	./.	./.
chr2	241459497	rs68104327	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,53:32:114:0.465:2	0/1:40,36:32:76:0.474:2	./.	./.	./.	0/1:79,28:33:107:0.262:2	./.	./.
chr2	241463453	rs3821348	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:28:9:0.444:2	0/1:51,45:32:96:0.469:2	./.	0/1:50,44:31:94:0.468:2	0/1:61,37:31:98:0.378:2	./.	./.	./.	./.
chr2	241463595	rs35996697	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:32:53:0.472:2	0/1:40,23:30:63:0.365:2	./.	./.	./.	0/1:20,22:33:42:0.524:2	./.	./.
chr2	241465261	rs35186665	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:30:65:0.446:2	./.	./.	./.
chr2	241492395	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,2:35:6:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241496770	rs62621191	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,26:30:57:0.456:2	0/1:31,40:31:71:0.563:2	./.	./.	./.	0/1:33,12:32:45:0.267:2	./.	./.
chr2	241531477	rs3792268	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241531479	rs3792269	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,40:30:97:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr2	241533345	rs13007017	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,84:30:155:0.542:2	./.	./.	./.
chr2	241535752	rs200003517	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,15:13:78:0.192:2	./.	./.	./.	./.	./.
chr2	241537421	rs3749166	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,14:32:14:1.00:2	0/1:34,49:31:83:0.590:2	0/1:0,93:32:94:1.00:2	0/1:30,41:31:71:0.577:2	0/1:33,45:31:78:0.577:2	0/1:0,72:32:72:1.00:2	0/1:31,46:33:77:0.597:2	./.	0/1:13,22:32:35:0.629:2
chr2	241538061	rs55878652	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,85:33:165:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr2	241538074	rs2975766	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:29:93:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,180:29:180:1.00:2	0/1:0,138:29:138:1.00:2	0/1:87,81:29:168:0.482:2	0/1:0,151:30:151:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,122:30:122:1.00:2	./.	0/1:0,134:29:134:1.00:2
chr2	241556421	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,5:28:105:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241556424	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241569669	rs147336244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:30:19:0.474:2	./.	./.	./.	./.
chr2	241569692	rs3749171	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:28:12:0.273:2	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.
chr2	241569849	rs12468377	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:27:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241570092	rs12468453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241570127	rs12468485	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241570249	rs3749172	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,27:27:53:0.509:2	0/1:16,9:28:25:0.360:2	0/1:0,12:26:12:1.00:2	0/1:33,41:28:74:0.554:2	0/1:41,33:28:74:0.446:2	0/1:45,34:28:79:0.430:2	0/1:35,48:27:83:0.578:2	0/1:2,92:29:94:0.979:2	0/1:1,52:29:53:0.981:2	./.	0/1:24,25:27:49:0.510:2
chr2	241570391	rs2975786	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,4:33:21:0.190:2	0/1:8,4:30:12:0.333:2	0/1:0,10:30:10:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,20:31:20:1.00:2	0/1:23,12:33:35:0.343:2	./.	0/1:1,35:33:36:0.972:2	0/1:0,33:32:33:1.00:2	./.	0/1:20,13:29:33:0.394:2
chr2	241570446	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2	./.	./.	./.	./.
chr2	241570639	rs116534085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,32:32:56:0.571:2	./.	./.	./.	./.	./.	./.
chr2	241616119	rs200464367	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,26:30:173:0.151:2	0/1:142,39:28:182:0.215:2	0/1:29,29:30:59:0.500:2	0/1:149,40:29:189:0.212:2	0/1:147,38:31:188:0.205:2	0/1:147,37:30:185:0.201:2	0/1:88,97:31:185:0.524:2	0/1:164,30:30:194:0.155:2	./.	0/1:114,72:29:187:0.387:2	0/1:148,28:27:178:0.159:2
chr2	241621685	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,8:33:41:0.195:2	0/1:21,10:32:31:0.323:2	./.	./.	./.	0/1:57,18:32:75:0.240:2	0/1:38,20:31:58:0.345:2	./.	./.	0/1:16,22:33:38:0.579:2	0/1:14,10:31:25:0.417:2
chr2	241621700	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,10:28:44:0.227:2	0/1:21,10:29:31:0.323:2	./.	./.	./.	0/1:57,18:28:76:0.240:2	0/1:35,22:29:57:0.386:2	./.	./.	0/1:19,25:30:44:0.568:2	0/1:12,9:27:21:0.429:2
chr2	241621747	rs201329918	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,10:29:37:0.270:2	0/1:20,7:31:27:0.259:2	./.	./.	./.	0/1:33,15:30:49:0.313:2	0/1:19,15:30:34:0.441:2	./.	./.	0/1:12,25:29:38:0.676:2	0/1:13,9:31:22:0.409:2
chr2	241621788	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.	./.	./.	0/1:6,11:31:17:0.647:2	./.
chr2	241621866	rs62187796	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:28:11:0.818:2	0/1:2,5:30:7:0.714:2	0/1:3,12:31:15:0.800:2	./.	0/1:2,7:31:9:0.778:2	0/1:4,7:31:11:0.636:2	./.	0/1:2,5:30:7:0.714:2
chr2	241621869	rs74882485	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:13,3:29:16:0.188:2	./.	./.	0/1:8,4:33:12:0.333:2	0/1:0,2:31:2:1.00:2	./.
chr2	241622187	rs4081909	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:31:20:0.700:2	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.
chr2	241622209	rs4081908	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,19:29:83:0.235:2	0/1:13,17:30:31:0.567:2	0/1:10,19:30:29:0.655:2	0/1:0,85:30:85:1.00:2	0/1:0,60:31:61:1.00:2	0/1:1,114:29:115:0.991:2	0/1:1,152:30:153:0.993:2	0/1:104,44:30:149:0.297:2	0/1:63,62:30:126:0.496:2	0/1:0,114:30:114:1.00:2	0/1:0,92:29:92:1.00:2
chr2	241627836	rs1003972	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:34:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241627928	rs1560619	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,14:31:40:0.350:2	0/1:19,7:31:26:0.269:2	./.	0/1:37,33:30:70:0.471:2	0/1:29,32:31:61:0.525:2	0/1:25,23:30:48:0.479:2	0/1:45,33:30:78:0.423:2	./.	./.	0/1:0,37:30:37:1.00:2	0/1:21,23:30:44:0.523:2
chr2	241631390	rs146209567	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:70,4:29:74:0.054:2	./.	./.	0/1:127,8:32:135:0.059:2	./.	0/1:73,12:31:85:0.141:2	0/1:67,8:32:75:0.107:2	0/1:95,8:32:103:0.078:2	0/1:88,7:33:95:0.074:2	0/1:43,3:32:46:0.065:2	0/1:54,10:32:64:0.156:2
chr2	241631413	rs71428454	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,14:31:50:0.280:2	0/1:23,5:28:28:0.179:2	./.	./.	./.	0/1:34,11:30:45:0.244:2	0/1:18,8:31:26:0.308:2	./.	./.	0/1:3,18:30:21:0.857:2	0/1:39,4:30:43:0.093:2
chr2	241631476	rs4328629	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,6:32:13:0.462:2	./.	./.	0/1:11,8:29:19:0.421:2	0/1:6,11:31:17:0.647:2	0/1:16,10:28:27:0.385:2	0/1:2,3:29:5:0.600:2	./.	./.	0/1:0,14:32:14:1.00:2	0/1:6,3:33:9:0.333:2
chr2	241631665	rs76463197	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,21:31:43:0.488:2	0/1:26,20:30:46:0.435:2	0/1:20,29:30:49:0.592:2	0/1:7,8:31:15:0.533:2	0/1:17,21:30:38:0.553:2	0/1:13,16:31:29:0.552:2	./.	0/1:3,10:29:13:0.769:2
chr2	241631798	rs142225246	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:31:19:0.421:2	./.	./.	./.	0/1:8,9:31:18:0.529:2	./.
chr2	241631839	rs202017172	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,10:31:25:0.400:2	0/1:14,11:32:25:0.440:2	./.	./.	./.	0/1:21,10:29:31:0.323:2	0/1:16,9:28:25:0.360:2	./.	./.	0/1:6,14:28:21:0.700:2	0/1:10,5:31:15:0.333:2
chr2	241631886	rs375751722	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:29:33:0.424:2	0/1:20,10:27:30:0.333:2	./.	./.	./.	0/1:31,10:27:41:0.244:2	0/1:30,12:28:42:0.286:2	./.	./.	0/1:14,14:28:28:0.500:2	0/1:17,6:30:23:0.261:2
chr2	241631901	rs372417168	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:32:30:0.400:2	0/1:18,9:32:27:0.333:2	./.	./.	./.	0/1:33,11:32:44:0.250:2	0/1:32,13:31:45:0.289:2	./.	./.	0/1:13,14:33:27:0.519:2	0/1:18,5:32:23:0.217:2
chr2	241637616	rs201744512	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,43:29:186:0.235:2	0/1:143,34:30:178:0.192:2	0/1:25,29:30:54:0.537:2	0/1:157,29:29:186:0.156:2	0/1:150,37:29:189:0.198:2	0/1:155,27:30:183:0.148:2	0/1:140,51:30:191:0.267:2	0/1:156,33:29:189:0.175:2	./.	0/1:118,64:29:182:0.352:2	0/1:153,28:28:182:0.155:2
chr2	241660387	rs76974316	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,79:29:156:0.506:2	./.	./.
chr2	241674165	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.
chr2	241685270	rs143037290	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:29:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241685586	rs73102625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,29:32:70:0.414:2	./.	./.	./.
chr2	241688137	rs115056533	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	./.	./.	./.	0/1:47,18:33:65:0.277:2	./.	./.
chr2	241696840	rs10594016	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,7:22:67:0.104:2	./.	./.	./.	./.	./.	./.	./.
chr2	241696941	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,15:11:115:0.130:2	./.
chr2	241700676	rs35945835	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,30:31:83:0.361:2	./.	./.	./.	./.	./.
chr2	241713646	rs1063353	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:32:21:1.00:2	./.	./.	0/1:92,88:32:180:0.489:2	0/1:116,74:33:190:0.389:2	0/1:87,107:33:194:0.552:2	0/1:92,74:33:166:0.446:2	./.	0/1:82,67:32:149:0.450:2
chr2	241722445	rs2288750	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	0/1:34,44:31:78:0.564:2	./.	./.	0/1:48,43:32:91:0.473:2	./.	./.
chr2	241808314	rs34116584	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,47:29:87:0.540:2	./.	./.	0/1:53,71:29:124:0.573:2	0/1:3,90:30:93:0.968:2	./.	./.
chr2	241808685	rs35698882	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,55:32:135:0.407:2	./.	./.	0/1:100,58:32:158:0.367:2	0/1:1,101:33:102:0.990:2	./.	./.
chr2	241813453	rs33958047	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	0/1:31,12:30:43:0.279:2	./.	./.	./.	./.
chr2	241817516	rs4426527	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,39:32:75:0.520:2	./.	./.	0/1:33,49:32:82:0.598:2	0/1:0,66:33:66:1.00:2	./.	./.
chr2	241828012	rs6708304	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.	0/1:0,13:32:13:1.00:2	0/1:0,5:32:5:1.00:2	0/1:9,4:33:13:0.308:2	./.	./.	./.
chr2	241828034	rs6707568	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,9:28:9:1.00:2	0/1:2,16:31:18:0.889:2	0/1:1,18:30:19:0.947:2	0/1:0,7:32:7:1.00:2
chr2	241830969	rs10171067	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:0,39:30:39:1.00:2	0/1:2,43:31:45:0.956:2	0/1:51,36:30:87:0.414:2	./.	./.	0/1:13,18:32:31:0.581:2
chr2	241831005	rs10195453	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,33:30:33:1.00:2	0/1:0,42:31:42:1.00:2	0/1:42,22:31:64:0.344:2	./.	./.	0/1:8,19:31:27:0.704:2
chr2	241831296	rs6709469	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:61,3:34:64:0.047:2	./.	0/1:7,11:32:18:0.611:2	./.	./.	0/1:0,83:31:84:1.00:2	0/1:0,94:32:94:1.00:2	0/1:67,36:31:103:0.350:2	./.	./.	0/1:41,39:32:80:0.488:2
chr2	241834907	rs4359646	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,83:30:198:0.419:2	0/1:113,83:31:196:0.423:2	./.	./.	./.	./.
chr2	241834944	rs4468809	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	0/1:167,5:33:172:0.029:2	0/1:3,168:32:171:0.982:2	0/1:3,162:33:165:0.982:2	0/1:106,83:33:189:0.439:2	./.	./.	0/1:69,60:32:129:0.465:2
chr2	241835379	rs12105122	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.
chr2	241865156	rs4675847	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:0,129:32:129:1.00:2	./.	0/1:113,59:33:172:0.343:2	0/1:0,152:32:152:1.00:2	0/1:106,66:33:172:0.384:2	0/1:0,136:32:136:1.00:2	0/1:96,83:32:179:0.464:2
chr2	241872597	rs4441463	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,14:29:15:0.933:2	./.	0/1:0,87:30:87:1.00:2	./.	0/1:54,33:30:87:0.379:2	0/1:1,76:30:77:0.987:2	0/1:67,45:30:112:0.402:2	0/1:38,25:30:63:0.397:2	0/1:34,30:28:64:0.469:2
chr2	241898824	rs10169006	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:29:10:1.00:2	./.	0/1:2,90:29:92:0.978:2	./.	0/1:103,53:29:156:0.340:2	0/1:0,134:30:134:1.00:2	0/1:41,48:32:89:0.539:2	0/1:50,40:30:90:0.444:2	0/1:58,35:30:93:0.376:2
chr2	241903943	rs77569264	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	0/1:59,47:32:106:0.443:2	./.	./.	./.	./.	./.	0/1:22,29:32:51:0.569:2
chr2	241904001	rs11688859	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:28:11:1.00:2	./.	0/1:0,24:28:24:1.00:2	./.	0/1:9,12:30:21:0.571:2	0/1:0,33:28:33:1.00:2	0/1:17,20:29:37:0.541:2	0/1:17,9:29:26:0.346:2	0/1:5,7:28:12:0.583:2
chr2	241922430	rs4577273	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,41:28:104:0.394:2	./.	./.	0/1:80,74:29:154:0.481:2	./.	./.	./.	./.
chr2	241929228	rs10200024	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,17:30:17:1.00:2	0/1:3,74:29:77:0.961:2	0/1:42,36:29:78:0.462:2	0/1:0,76:29:76:1.00:2	0/1:45,29:30:74:0.392:2	./.	0/1:45,44:31:89:0.494:2	0/1:33,24:30:57:0.421:2	0/1:40,25:29:66:0.385:2
chr2	241979550	rs7571117	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,26:28:55:0.473:2	0/1:22,20:28:42:0.476:2	0/1:4,10:28:14:0.714:2	0/1:29,35:27:64:0.547:2	0/1:65,44:29:109:0.404:2	0/1:57,23:29:80:0.288:2	0/1:2,81:28:83:0.976:2	0/1:0,95:28:95:1.00:2	./.	0/1:34,30:29:64:0.469:2	0/1:0,48:27:48:1.00:2
chr2	241991797	rs373069031	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,29:30:42:0.690:2
chr2	241991875	rs57214830	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,28:32:49:0.571:2	0/1:15,18:30:33:0.545:2	./.	0/1:17,45:31:62:0.726:2	./.	0/1:55,40:30:95:0.421:2	0/1:32,43:30:75:0.573:2	./.	./.	./.	./.
chr2	242002263	rs3732228	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,26:30:71:0.366:2	./.	./.	./.	./.	./.	./.	./.
chr2	242003487	rs17852471	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,41:29:85:0.488:2	0/1:32,13:30:45:0.289:2	./.	0/1:44,46:29:90:0.511:2	./.	0/1:57,39:29:96:0.406:2	0/1:15,25:29:40:0.625:2	./.	./.	./.	./.
chr2	242004296	rs150081750	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:30:102:0.525:2	./.	./.	./.	./.	./.
chr2	242004866	rs2286321	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,23:29:59:0.390:2	0/1:14,8:29:22:0.364:2	./.	0/1:31,34:28:65:0.523:2	./.	0/1:29,29:28:58:0.500:2	0/1:30,10:27:40:0.250:2	./.	./.	./.	./.
chr2	242021126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.
chr2	242021742	rs2108485	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,35:29:91:0.385:2	0/1:28,19:30:47:0.404:2	./.	./.	./.	0/1:50,60:30:110:0.545:2	0/1:151,5:33:156:0.032:2	0/1:84,65:30:149:0.436:2	./.	./.	0/1:38,55:30:93:0.591:2
chr2	242028741	rs1062748	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:30:18:0.444:2	./.	0/1:60,50:27:110:0.455:2	./.	./.	0/1:78,58:28:136:0.426:2	0/1:47,59:31:106:0.557:2	0/1:40,37:27:77:0.481:2	0/1:66,36:29:103:0.353:2
chr2	242029426	rs62187374	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,40:31:74:0.541:2	0/1:30,22:31:52:0.423:2	./.	./.	./.	0/1:42,35:31:77:0.455:2	./.	./.	./.	./.	./.
chr2	242029737	rs61234509	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:31:19:0.316:2	./.	0/1:115,78:32:193:0.404:2	./.	./.	0/1:102,91:32:193:0.472:2	0/1:95,97:33:192:0.505:2	0/1:87,77:32:164:0.470:2	0/1:70,64:32:134:0.478:2
chr2	242033696	rs57117519	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:30:72:0.431:2	./.	./.	0/1:36,28:31:65:0.438:2
chr2	242033770	rs2302047	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	0/1:50,33:31:83:0.398:2	./.	./.	0/1:55,60:32:115:0.522:2	0/1:55,51:34:106:0.481:2	0/1:23,42:32:65:0.646:2	0/1:50,49:32:99:0.495:2
chr2	242035544	rs2240539	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,113:31:198:0.571:2	./.	./.	0/1:60,68:31:128:0.531:2
chr2	242036797	rs2286323	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,36:30:74:0.486:2	0/1:29,27:30:56:0.482:2	./.	./.	./.	0/1:38,39:30:77:0.506:2	./.	./.	./.	./.	./.
chr2	242039198	rs3796093	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,36:33:77:0.468:2	./.	./.	0/1:38,32:32:70:0.457:2
chr2	242040636	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,65:31:124:0.524:2	./.	./.	./.	./.	./.	./.
chr2	242041728	rs2286324	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,23:31:64:0.359:2	0/1:15,14:31:29:0.483:2	./.	./.	./.	0/1:54,63:30:117:0.538:2	./.	./.	./.	./.	./.
chr2	242046785	rs1131293	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,50:31:93:0.538:2	0/1:26,15:32:41:0.366:2	./.	./.	./.	0/1:74,79:32:153:0.516:2	./.	./.	./.	./.	./.
chr2	242047605	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,5:26:40:0.125:2	./.	./.	./.	0/1:29,3:30:32:0.094:2
chr2	242051777	rs2074824	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,38:33:68:0.559:2	0/1:32,22:33:54:0.407:2	./.	./.	./.	0/1:53,62:32:115:0.539:2	./.	./.	./.	./.	./.
chr2	242054403	rs3815305	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:32:31:0.387:2	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242054718	rs61748659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242062162	rs2302050	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:32:48:0.375:2	0/1:14,12:30:26:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242063448	rs2302052	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:27:56:0.500:2	./.	./.	0/1:19,17:30:36:0.472:2
chr2	242065624	rs2240541	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:29:41:0.415:2	./.	./.	0/1:14,9:27:23:0.391:2
chr2	242066314	rs2240542	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,56:31:107:0.523:2	0/1:63,49:31:112:0.438:2	./.	0/1:3,85:31:88:0.966:2	0/1:38,39:32:77:0.506:2	0/1:38,36:31:74:0.486:2	0/1:0,64:31:64:1.00:2
chr2	242066443	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.
chr2	242066830	rs2240544	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:32:57:0.368:2	./.	./.	0/1:22,16:33:38:0.421:2
chr2	242072357	rs34401965	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	0/1:41,47:33:89:0.534:2	./.	./.
chr2	242076549	rs141291099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.
chr2	242077496	rs1470414	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,16:32:33:0.485:2	0/1:7,14:32:21:0.667:2	./.	0/1:33,25:32:58:0.431:2	0/1:35,42:31:77:0.545:2	0/1:31,34:31:65:0.523:2	0/1:22,24:31:46:0.522:2	0/1:41,29:31:70:0.414:2	./.	0/1:0,38:32:38:1.00:2	0/1:18,23:31:41:0.561:2
chr2	242079007	rs2074828	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,37:30:66:0.561:2	0/1:27,20:30:47:0.426:2	0/1:5,9:29:14:0.643:2	0/1:58,51:30:109:0.468:2	0/1:55,44:29:99:0.444:2	0/1:59,56:29:115:0.487:2	0/1:51,41:29:92:0.446:2	0/1:67,65:29:132:0.492:2	./.	0/1:0,75:30:75:1.00:2	0/1:56,42:29:100:0.429:2
chr2	242082262	rs6709462	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,22:31:42:0.524:2	0/1:18,6:31:24:0.250:2	0/1:8,4:31:12:0.333:2	0/1:27,23:31:50:0.460:2	0/1:30,35:30:65:0.538:2	0/1:43,29:31:72:0.403:2	0/1:45,35:31:80:0.438:2	0/1:31,34:30:65:0.523:2	0/1:44,23:32:67:0.343:2	0/1:0,37:30:37:1.00:2	0/1:21,24:31:45:0.533:2
chr2	242128115	rs150946357	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,53:31:122:0.434:2	./.	./.	./.	./.	./.
chr2	242129487	rs11695874	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,64:31:115:0.557:2	./.	0/1:59,65:31:124:0.524:2	0/1:57,53:30:110:0.482:2	./.	./.
chr2	242139546	rs146489756	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.
chr2	242140785	rs78154103	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:30:28:0.536:2	0/1:17,20:30:37:0.541:2	0/1:25,11:31:36:0.306:2	0/1:9,17:29:26:0.654:2	./.	./.
chr2	242141719	rs2074840	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,4:33:18:0.222:2	0/1:4,3:32:7:0.429:2	0/1:0,2:32:2:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,16:31:16:1.00:2	0/1:11,11:30:22:0.500:2	0/1:0,31:32:31:1.00:2	0/1:15,14:32:29:0.483:2	0/1:0,21:33:21:1.00:2	0/1:12,17:32:29:0.586:2
chr2	242149010	rs57677160	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,87:30:178:0.489:2	0/1:66,74:30:140:0.529:2	0/1:79,114:30:193:0.591:2	0/1:65,75:31:140:0.536:2	./.	./.
chr2	242151585	rs7593101	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	0/1:101,61:31:162:0.377:2	0/1:7,141:31:148:0.953:2	./.	0/1:39,37:31:77:0.487:2	./.
chr2	242157087	rs111770284	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	0/1:1,24:29:25:0.960:2	0/1:3,4:31:7:0.571:2	./.	0/1:7,11:30:18:0.611:2	./.	0/1:1,3:30:4:0.750:2
chr2	242157089	rs151090828	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	0/1:9,10:27:19:0.526:2	./.	./.
chr2	242157228	rs78605785	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	0/1:17,7:31:24:0.292:2	0/1:2,23:32:25:0.920:2	./.	0/1:11,13:32:24:0.542:2	./.
chr2	242157241	rs76832527	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,50:30:51:0.980:2	./.	0/1:1,47:30:48:0.979:2	0/1:6,14:31:20:0.700:2	./.	0/1:12,13:32:25:0.520:2	./.	0/1:6,8:26:14:0.571:2
chr2	242163359	rs7590653	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:30:53:0.434:2	0/1:0,39:31:39:1.00:2	./.	0/1:26,22:31:48:0.458:2	./.
chr2	242169646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.
chr2	242174609	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.
chr2	242179129	rs200802562	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:24,7:24:31:0.226:2	./.	0/1:52,21:14:73:0.288:2	0/1:67,13:12:80:0.163:2	0/1:63,15:14:78:0.192:2	./.	./.	0/1:54,10:13:64:0.156:2	0/1:44,8:15:52:0.154:2	./.
chr2	242179134	rs10153800	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,90:30:91:0.989:2	0/1:3,103:30:108:0.972:2	0/1:41,29:31:70:0.414:2	0/1:31,28:29:59:0.475:2	./.
chr2	242192848	rs7578199	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,135:32:137:0.985:2	0/1:4,142:32:146:0.973:2	0/1:74,66:34:140:0.471:2	0/1:57,43:32:100:0.430:2	./.
chr2	242202149	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,70:30:135:0.519:2
chr2	242203916	rs11891776	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:31:64:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,99:31:99:1.00:2	./.	0/1:0,88:30:88:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,123:31:124:1.00:2
chr2	242275509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.
chr2	242312572	rs61739702	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,35:32:106:0.330:2	./.	0/1:42,49:32:92:0.538:2	./.
chr2	242350466	rs2240479	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,35:33:71:0.493:2	0/1:25,13:33:38:0.342:2	./.	0/1:50,33:33:83:0.398:2	0/1:26,36:33:62:0.581:2	./.	./.	./.	./.	./.	./.
chr2	242371101	rs757978	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,43:32:90:0.478:2	./.	./.
chr2	242373686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242407588	rs41342147	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,38:32:94:0.404:2	./.	./.	./.	0/1:53,59:32:112:0.527:2	./.	./.
chr2	242407746	rs10933559	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,40:31:72:0.556:2	./.	0/1:1,42:31:43:0.977:2	0/1:51,34:31:85:0.400:2	./.	./.	./.
chr2	242422890	rs144542827	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:34:66:0.061:2	./.
chr2	242433489	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,12:15:161:0.075:2	./.	./.	./.	./.	./.	./.
chr2	242438515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.
chr2	242440221	rs13013693	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:29:22:0.545:2	./.	0/1:76,103:31:179:0.575:2	./.	0/1:5,172:32:177:0.972:2	0/1:108,77:32:186:0.416:2	./.	./.	./.
chr2	242440268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.
chr2	242447423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.
chr2	242501828	rs145137590	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:32:77:0.532:2	./.
chr2	242572846	rs3208142	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,33:32:34:0.971:2	0/1:0,40:33:40:1.00:2	./.	0/1:33,26:31:59:0.441:2	./.	0/1:25,23:33:48:0.479:2	./.
chr2	242573211	rs7424328	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,17:30:41:0.415:2	0/1:12,15:30:27:0.556:2	0/1:0,5:30:5:1.00:2	./.	0/1:31,28:30:59:0.475:2	0/1:2,45:30:47:0.957:2	./.	0/1:36,35:30:71:0.493:2	./.	0/1:21,25:30:46:0.543:2	0/1:23,22:31:45:0.489:2
chr2	242598758	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	./.	./.
chr2	242606036	rs6709768	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,5:34:78:0.064:2	./.	0/1:9,7:33:16:0.438:2	0/1:73,55:33:128:0.430:2	0/1:86,69:33:155:0.445:2	0/1:49,53:32:102:0.520:2	./.	0/1:76,67:32:143:0.469:2	./.	0/1:48,37:33:85:0.435:2	0/1:52,36:33:88:0.409:2
chr2	242606080	rs35613684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:31:85:0.447:2	./.
chr2	242610738	rs11538896	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,97:30:98:0.990:2	0/1:0,60:29:60:1.00:2	./.	0/1:74,73:31:148:0.497:2	./.	./.	0/1:2,194:31:196:0.990:2	./.	./.	./.	0/1:57,38:31:95:0.400:2
chr2	242610773	rs7601000	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,93:31:94:0.989:2	0/1:0,54:32:54:1.00:2	0/1:12,7:29:19:0.368:2	0/1:0,165:32:165:1.00:2	0/1:1,172:32:173:0.994:2	0/1:0,189:32:189:1.00:2	0/1:0,178:32:178:1.00:2	0/1:89,97:32:186:0.522:2	./.	0/1:0,110:32:110:1.00:2	0/1:0,104:31:105:1.00:2
chr2	242618050	rs1131195	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:25,26:33:51:0.510:2	0/1:17,11:32:28:0.393:2	0/1:26,18:32:44:0.409:2	./.	0/1:26,26:33:52:0.500:2	./.	0/1:23,23:32:46:0.500:2	0/1:47,23:32:70:0.329:2
chr2	242674803	rs77940364	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:32:16:0.625:2	0/1:0,4:32:4:1.00:2	./.
chr2	242680430	rs4073889	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,14:32:29:0.483:2	0/1:20,15:30:35:0.429:2	./.	./.	0/1:0,50:31:50:1.00:2	./.	./.	0/1:0,49:32:49:1.00:2	0/1:0,43:32:43:1.00:2	0/1:18,23:32:41:0.561:2	0/1:19,11:30:30:0.367:2
chr2	242688292	rs34767042	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,36:31:78:0.462:2	0/1:32,25:28:57:0.439:2	0/1:6,5:31:11:0.455:2	./.	0/1:0,115:29:115:1.00:2	./.	./.	0/1:0,116:30:116:1.00:2	0/1:1,117:31:118:0.992:2	0/1:32,46:31:78:0.590:2	0/1:27,36:32:63:0.571:2
chr2	242690675	rs1106639	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,83:31:193:0.430:2	./.	0/1:117,72:32:189:0.381:2	./.	0/1:66,75:32:141:0.532:2
chr2	242690745	rs1105273	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,35:31:69:0.507:2	0/1:22,27:31:49:0.551:2	0/1:6,7:31:13:0.538:2	./.	0/1:75,38:31:113:0.336:2	./.	./.	0/1:61,59:32:120:0.492:2	0/1:51,83:33:134:0.619:2	./.	./.
chr2	242690770	rs141343442	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,38:28:104:0.365:2	./.	./.
chr2	242694669	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:27:21:0.238:2	./.	./.	./.	./.	./.
chr2	242694999	rs145205270	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:32:71:0.521:2	./.	./.	./.	./.	./.
chr2	242716380	rs12469459	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,46:31:98:0.469:2	0/1:39,32:32:71:0.451:2	./.	0/1:1,77:32:78:0.987:2	./.	0/1:37,36:32:73:0.493:2	./.	0/1:36,28:32:64:0.438:2
chr2	242742875	rs62620233	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,33:29:75:0.440:2	./.	./.	0/1:34,26:29:60:0.433:2	./.	0/1:33,28:29:61:0.459:2	./.
chr2	242743357	rs78253117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	./.
chr2	242756247	rs146496787	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:33:18:0.333:2	./.	./.
chr2	242757411	rs36111671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,15:28:32:0.469:2	./.	./.	./.	./.	./.	./.
chr2	242757820	rs11545301	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:32:32:0.625:2	0/1:0,17:32:17:1.00:2	./.	0/1:10,10:33:20:0.500:2	0/1:11,6:31:17:0.353:2	./.
chr2	242758179	rs2293764	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,11:32:36:0.306:2	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	./.	0/1:32,10:31:42:0.238:2
chr2	242758203	rs2293763	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,22:32:69:0.319:2	0/1:0,23:32:23:1.00:2	./.	./.	./.	./.	./.	0/1:50,17:31:67:0.254:2
chr2	242758301	rs147362605	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:27:74:0.419:2	./.	./.	./.
chr2	242758326	rs2293761	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,18:28:47:0.383:2	0/1:0,21:25:21:1.00:2	./.	./.	./.	./.	./.	0/1:18,19:26:37:0.514:2
chr2	242793273	rs2227981	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,16:28:48:0.333:2	0/1:9,10:29:19:0.526:2	./.	0/1:34,21:31:55:0.382:2	0/1:0,22:30:22:1.00:2	0/1:0,57:29:57:1.00:2	0/1:20,12:29:32:0.375:2	./.	0/1:25,10:31:35:0.286:2	0/1:26,22:30:48:0.458:2	./.
chr2	242813124	rs13016102	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,57:32:57:1.00:2
chr2	242814009	rs7420371	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	0/1:0,5:31:5:1.00:2	0/1:0,10:31:10:1.00:2	./.	./.	./.	./.	./.
chr2	242814027	rs76439282	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2
chr2	242814268	rs114620732	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,37:31:69:0.536:2	./.	./.	./.	./.	./.	./.	./.
chr2	242814283	rs28499542	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,39:30:77:0.506:2	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2
chr2	242814360	rs28378061	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,19:31:50:0.380:2	./.	./.	./.	./.	./.	./.	0/1:26,9:34:35:0.257:2
chr2	242814463	rs28523279	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:32:58:0.448:2	./.	./.	./.	./.	./.	./.	0/1:12,18:32:30:0.600:2
chr2	242814588	rs371087280	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:26:21:0.476:2	0/1:3,5:29:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242839363	rs4973668	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:32:12:0.250:2	0/1:57,45:32:102:0.441:2	0/1:1,85:32:86:0.988:2	0/1:0,99:32:99:1.00:2	./.	./.	./.	./.	0/1:39,38:33:77:0.494:2
chr2	242839372	rs78233573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,46:32:114:0.404:2	./.
chr3	361508	rs2272522	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:8,8:33:16:0.500:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	0/1:12,14:33:26:0.538:2	./.	./.
chr3	391100	rs13060847	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,26:33:26:1.00:2	0/1:2,33:33:35:0.943:2	0/1:0,54:34:54:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,64:33:64:1.00:2
chr3	396416	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr3	403425	rs148288092	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,95:33:186:0.511:2	0/1:55,45:32:100:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	407739	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.
chr3	430968	rs115357599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,51:32:116:0.440:2
chr3	439963	rs6442827	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,50:33:51:0.980:2	0/1:0,53:33:53:1.00:2	0/1:0,85:34:85:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,80:33:80:1.00:2
chr3	440028	rs6771714	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:29:72:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,101:29:101:1.00:2	0/1:2,69:29:71:0.972:2	0/1:0,66:29:66:1.00:2	0/1:0,109:30:109:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,80:29:81:1.00:2
chr3	1262474	rs2013828	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:29:17:0.353:2	0/1:3,142:30:145:0.979:2	./.	0/1:70,88:29:158:0.557:2	0/1:2,94:29:96:0.979:2	./.	0/1:87,71:29:158:0.449:2	./.	0/1:87,76:29:163:0.466:2
chr3	1269607	rs61739199	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,36:29:85:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr3	1363384	rs185281214	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,51:32:124:0.411:2	./.	./.	./.
chr3	1418753	rs17038365	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	./.	./.	./.	./.	0/1:36,28:32:64:0.438:2	./.
chr3	1424718	rs2291101	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,62:29:132:0.470:2	0/1:41,33:30:74:0.446:2	./.	0/1:85,69:29:154:0.448:2	0/1:94,40:28:134:0.299:2	./.	0/1:97,67:29:164:0.409:2	0/1:0,126:29:126:1.00:2	0/1:117,71:29:188:0.378:2	0/1:65,55:29:120:0.458:2	0/1:0,120:29:121:1.00:2
chr3	1424745	rs4684146	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:79,65:31:144:0.451:2	0/1:49,40:32:89:0.449:2	./.	./.	0/1:99,51:31:150:0.340:2	./.	./.	0/1:96,60:31:156:0.385:2	./.	./.	0/1:90,78:32:168:0.464:2
chr3	1424850	rs2291100	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,20:30:21:0.952:2	0/1:69,65:31:134:0.485:2	./.	0/1:61,76:30:137:0.555:2	./.	./.	0/1:89,87:31:176:0.494:2	0/1:72,48:31:120:0.400:2	./.
chr3	1424987	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.
chr3	3067850	rs7629924	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	./.	0/1:2,149:33:151:0.987:2	./.	./.
chr3	3067853	rs7639977	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	0/1:2,148:32:150:0.987:2	./.	./.
chr3	3076401	rs6790908	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,72:31:73:0.986:2	0/1:0,32:30:32:1.00:2	./.	./.	0/1:54,49:30:103:0.476:2	0/1:52,38:31:90:0.422:2	0/1:61,77:30:138:0.558:2	0/1:0,121:30:121:1.00:2	./.	0/1:0,70:30:70:1.00:2	./.
chr3	3076443	rs6803232	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,84:29:84:1.00:2	0/1:0,40:29:40:1.00:2	0/1:1,12:26:13:0.923:2	./.	0/1:82,68:29:150:0.453:2	0/1:75,51:29:126:0.405:2	0/1:79,96:29:175:0.549:2	0/1:0,154:29:154:1.00:2	0/1:71,47:30:118:0.398:2	0/1:0,86:29:86:1.00:2	./.
chr3	3080611	rs10510251	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,29:33:63:0.460:2	0/1:14,17:32:31:0.548:2	./.	./.	0/1:51,49:32:100:0.490:2	./.	0/1:25,26:32:51:0.510:2	./.	./.	./.	./.
chr3	3081750	rs6802588	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,61:31:109:0.560:2	0/1:27,40:31:67:0.597:2	0/1:6,7:31:13:0.538:2	0/1:5,124:31:130:0.961:2	0/1:52,51:31:103:0.495:2	./.	0/1:55,44:30:99:0.444:2	./.	0/1:77,57:32:134:0.425:2	0/1:70,66:31:136:0.485:2	0/1:0,152:31:152:1.00:2
chr3	3081825	rs339285	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:29:123:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,122:28:122:1.00:2	0/1:0,140:28:140:1.00:2	0/1:0,149:29:149:1.00:2	0/1:84,71:29:155:0.458:2	0/1:74,63:30:138:0.460:2	0/1:0,114:29:115:1.00:2	0/1:0,158:29:158:1.00:2
chr3	3095492	rs200709524	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,9:15:47:0.191:2	./.	./.	./.	./.	0/1:47,10:12:57:0.175:2	./.	0/1:41,11:17:53:0.212:2	./.	./.	0/1:51,12:18:63:0.190:2
chr3	3139957	rs2290610	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,49:32:97:0.510:2	0/1:46,36:32:82:0.439:2	0/1:4,7:33:11:0.636:2	0/1:61,44:33:105:0.419:2	./.	0/1:46,51:32:97:0.526:2	./.	0/1:55,52:33:107:0.486:2	0/1:50,48:34:98:0.490:2	0/1:59,50:33:109:0.459:2	0/1:74,68:33:142:0.479:2
chr3	3170792	rs334773	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,105:33:105:1.00:2	0/1:1,77:32:78:0.987:2	0/1:0,104:32:104:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,88:33:88:1.00:2
chr3	3171622	rs150869212	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,20:29:42:0.476:2	./.	./.	./.	./.	./.	0/1:29,29:30:58:0.500:2
chr3	3189279	rs1705805	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:31:74:1.00:2	0/1:0,44:30:44:1.00:2	./.	0/1:1,83:31:84:0.988:2	0/1:36,23:29:59:0.390:2	0/1:1,72:30:73:0.986:2	0/1:1,61:31:62:0.984:2	0/1:35,30:31:65:0.462:2	0/1:38,41:31:79:0.519:2	0/1:42,34:31:76:0.447:2	0/1:66,55:31:121:0.455:2
chr3	3192647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr3	3192694	rs201809570	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,11:17:72:0.153:2	./.	./.	./.	./.
chr3	3221322	rs200222965	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,15:12:107:0.142:2
chr3	3886501	rs187548325	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,67:32:162:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr3	3886580	rs4685689	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,75:31:75:1.00:2	0/1:1,67:30:68:0.985:2	0/1:0,59:30:59:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,96:31:96:1.00:2
chr3	3886721	rs3749350	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:33:11:0.455:2	0/1:36,32:33:68:0.471:2	./.	0/1:37,31:32:68:0.456:2	0/1:30,20:33:50:0.400:2	./.	./.	0/1:2,47:33:49:0.959:2	0/1:30,37:32:67:0.552:2
chr3	3886784	rs113168029	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,32:31:72:0.444:2	./.	./.	./.	./.	./.
chr3	3886847	rs3749349	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,17:32:46:0.370:2	./.	0/1:20,20:32:40:0.500:2	0/1:28,10:32:38:0.263:2	./.	./.	0/1:0,33:33:33:1.00:2	0/1:40,11:34:51:0.216:2
chr3	3886919	rs3749348	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	0/1:9,8:31:18:0.471:2	./.	./.	./.	0/1:0,17:32:17:1.00:2	0/1:21,6:33:27:0.222:2
chr3	3887093	rs9844909	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,11:31:19:0.579:2	./.	0/1:4,11:33:15:0.733:2	./.	0/1:9,15:34:24:0.625:2	./.	./.
chr3	3887171	rs75655400	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,14:31:25:0.560:2	./.	./.	./.	./.	./.	./.
chr3	3887508	rs35362954	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:29:83:0.434:2	0/1:30,25:29:55:0.455:2	./.	./.	./.	0/1:48,58:29:106:0.547:2
chr3	3887876	rs2120609	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:30:58:0.982:2	0/1:0,25:29:25:1.00:2	./.	0/1:27,36:30:63:0.571:2	0/1:31,23:29:54:0.426:2	0/1:35,29:30:64:0.453:2	./.	0/1:0,45:30:45:1.00:2	0/1:35,21:32:56:0.375:2	./.	0/1:43,29:29:72:0.403:2
chr3	3888429	rs34611357	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,17:32:52:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr3	3888653	rs7648844	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:32:41:0.561:2	0/1:7,12:32:19:0.632:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	3889222	rs1872417	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,65:32:65:1.00:2
chr3	4345702	rs76956955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,19:31:55:0.345:2	./.	./.	./.	./.	./.	./.
chr3	4345766	rs13099918	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,14:31:47:0.298:2	0/1:10,8:33:18:0.444:2	0/1:2,2:34:4:0.500:2	./.	0/1:15,19:31:34:0.559:2	./.	./.	0/1:35,19:32:54:0.352:2	0/1:19,26:34:45:0.578:2	0/1:0,40:33:40:1.00:2	0/1:29,32:33:61:0.525:2
chr3	4354697	rs6801634	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,47:31:106:0.443:2	0/1:59,58:31:117:0.496:2	0/1:53,46:31:99:0.465:2	./.	0/1:72,50:32:122:0.410:2	./.	./.
chr3	4354802	rs150691823	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,13:34:44:0.295:2	./.
chr3	4355483	rs6793896	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:34:21:0.381:2	./.	./.	./.	./.	./.	./.	./.
chr3	4358210	rs7647539	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:32:11:0.273:2	0/1:43,22:33:65:0.338:2	0/1:23,31:31:54:0.574:2	0/1:45,25:31:70:0.357:2	0/1:24,16:31:40:0.400:2	./.	0/1:28,21:33:49:0.429:2	0/1:2,43:32:45:0.956:2	0/1:41,26:31:67:0.388:2
chr3	4403837	rs2633852	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,14:34:37:0.378:2	0/1:18,5:33:23:0.217:2	./.	0/1:2,59:32:61:0.967:2	0/1:0,43:32:43:1.00:2	0/1:36,23:32:59:0.390:2	0/1:35,22:33:57:0.386:2	./.	0/1:37,27:33:64:0.422:2	0/1:33,30:32:63:0.476:2	0/1:39,42:32:81:0.519:2
chr3	4491007	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,6:31:112:0.054:2	./.	./.	./.	./.	./.	./.
chr3	4508742	rs2819590	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,4:30:12:0.333:2	0/1:4,8:30:12:0.667:2	0/1:2,3:31:5:0.600:2	0/1:7,5:32:12:0.417:2	0/1:9,3:32:12:0.250:2	0/1:2,5:30:7:0.714:2	0/1:4,6:32:10:0.600:2
chr3	4709097	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.
chr3	4712413	rs2306875	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:30:40:1.00:2	0/1:0,15:32:15:1.00:2	./.	./.	0/1:0,16:31:16:1.00:2	0/1:5,8:27:13:0.615:2	./.	0/1:15,19:31:34:0.559:2	0/1:22,15:32:37:0.405:2	0/1:10,7:32:17:0.412:2	0/1:13,27:31:40:0.675:2
chr3	4716811	rs2306877	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:71,64:33:135:0.474:2	0/1:25,36:32:61:0.590:2	./.	./.	0/1:56,27:31:83:0.325:2	./.	./.	./.	./.	0/1:49,55:33:104:0.529:2	./.
chr3	4725969	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,9:16:44:0.205:2	./.	0/1:38,7:17:45:0.156:2	0/1:41,13:14:54:0.241:2	0/1:54,10:16:65:0.156:2	0/1:39,6:21:45:0.133:2	0/1:62,8:23:70:0.114:2
chr3	4725973	rs199876574	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,10:13:62:0.161:2	./.	./.	0/1:61,14:14:76:0.187:2
chr3	4725976	rs201072463	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,12:14:54:0.222:2	./.	./.	0/1:52,14:13:66:0.212:2	./.	./.	0/1:66,14:18:80:0.175:2
chr3	4817057	rs6442905	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:29:81:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,52:29:52:1.00:2	0/1:1,25:28:26:0.962:2	0/1:1,59:29:60:0.983:2	0/1:0,60:30:60:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,105:29:105:1.00:2
chr3	4829732	rs13079522	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:86,54:31:140:0.386:2	0/1:42,43:30:85:0.506:2	0/1:11,5:30:16:0.313:2	./.	./.	0/1:53,82:30:135:0.607:2	./.	0/1:61,63:30:124:0.508:2	./.	./.	0/1:0,140:31:140:1.00:2
chr3	4842231	rs2291862	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,22:31:58:0.379:2	0/1:14,17:32:31:0.548:2	./.	0/1:37,31:31:68:0.456:2	./.	0/1:5,57:31:62:0.919:2	./.	./.	0/1:32,34:32:66:0.515:2	./.	0/1:0,73:31:73:1.00:2
chr3	4856180	rs711631	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,34:30:64:0.531:2	0/1:17,8:29:25:0.320:2	0/1:0,11:30:11:1.00:2	0/1:2,77:30:79:0.975:2	0/1:0,89:29:89:1.00:2	./.	0/1:0,87:29:87:1.00:2	0/1:2,87:29:89:0.978:2	0/1:0,82:30:82:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,64:29:64:1.00:2
chr3	4856234	rs901854	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,21:30:46:0.457:2	0/1:11,4:30:15:0.267:2	0/1:0,12:29:12:1.00:2	0/1:23,30:30:53:0.566:2	./.	./.	./.	0/1:0,55:29:55:1.00:2	0/1:28,29:32:57:0.509:2	0/1:0,34:29:34:1.00:2	0/1:0,38:30:38:1.00:2
chr3	5021403	rs2271566	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,12:31:17:0.706:2	./.	./.	./.	0/1:6,10:31:16:0.625:2	./.	./.
chr3	5024771	rs908078	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:33:35:0.486:2	./.	./.	./.	0/1:21,12:34:33:0.364:2	./.	./.
chr3	5164207	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.
chr3	5164221	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:27:197:0.025:2	./.	./.	./.
chr3	5164258	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:31:122:0.041:2	./.	./.	./.
chr3	5229643	rs144177905	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:24:9:0.556:2	./.	./.	./.
chr3	5229860	rs199602685	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:33:60:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr3	5241309	rs410509	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:1,39:33:40:0.975:2	0/1:0,11:33:11:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,75:33:75:1.00:2
chr3	5244711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2	./.
chr3	6903297	rs3749380	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:46:1.00:2	0/1:0,29:31:29:1.00:2	0/1:6,3:26:9:0.333:2	0/1:45,43:29:88:0.489:2	0/1:3,127:30:130:0.977:2	0/1:62,61:30:123:0.496:2	./.	0/1:71,43:31:114:0.377:2	./.	./.	./.
chr3	7494417	rs2229902	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,35:32:90:0.389:2	0/1:32,37:31:69:0.536:2	./.	./.	0/1:45,52:31:99:0.536:2	./.	0/1:55,43:31:98:0.439:2	0/1:67,50:31:117:0.427:2	0/1:0,104:33:104:1.00:2	0/1:2,82:32:84:0.976:2	./.
chr3	7620168	rs34373930	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:33:90:0.444:2	./.	./.	./.	0/1:2,85:33:87:0.977:2	./.
chr3	7620382	rs7614915	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:32:85:0.447:2	./.	./.	./.	0/1:1,40:33:42:0.976:2	./.
chr3	7620789	rs1485175	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,66:29:147:0.449:2	0/1:44,42:28:86:0.488:2	0/1:10,6:29:16:0.375:2	0/1:78,70:28:148:0.473:2	0/1:69,59:29:129:0.461:2	0/1:73,93:28:166:0.560:2	./.	0/1:3,168:28:171:0.982:2	./.	0/1:0,155:28:155:1.00:2	0/1:94,74:28:168:0.440:2
chr3	7620828	rs1485174	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,74:32:155:0.477:2	./.	./.	./.	0/1:1,138:32:140:0.993:2	./.
chr3	7728055	rs182447901	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:26:174:0.029:2	./.	./.	./.	./.
chr3	8590313	rs3088339	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,40:31:88:0.455:2	./.	0/1:34,27:30:61:0.443:2	./.	./.	0/1:40,22:30:64:0.355:2	0/1:31,34:30:66:0.523:2	./.
chr3	8675539	rs2276800	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,28:31:59:0.475:2	0/1:39,40:31:79:0.506:2	0/1:38,50:31:88:0.568:2	./.	./.	./.
chr3	8775457	rs2072583	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,30:31:65:0.462:2	0/1:21,20:32:41:0.488:2	0/1:7,3:31:10:0.300:2	./.	0/1:36,20:31:56:0.357:2	0/1:35,31:30:66:0.470:2	./.	./.	./.	./.	0/1:39,41:30:80:0.513:2
chr3	8775589	rs1974763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,60:31:120:0.500:2	./.	./.	0/1:41,51:32:92:0.554:2	0/1:61,72:31:133:0.541:2	0/1:57,60:32:117:0.513:2	./.	./.
chr3	8775661	rs1008642	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,14:32:44:0.318:2	0/1:18,12:32:30:0.400:2	0/1:6,3:33:9:0.333:2	./.	0/1:43,22:31:65:0.338:2	0/1:34,29:32:63:0.460:2	0/1:50,21:30:71:0.296:2	./.	./.	./.	0/1:39,28:32:67:0.418:2
chr3	8787220	rs13087941	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,38:31:71:0.535:2	0/1:36,36:31:72:0.500:2	0/1:23,27:31:50:0.540:2	./.	0/1:29,16:32:45:0.356:2
chr3	8809184	rs237902	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,26:29:47:0.553:2	0/1:4,15:31:19:0.789:2	./.	./.	./.	0/1:0,53:30:53:1.00:2	0/1:49,36:30:85:0.424:2	0/1:40,46:29:86:0.535:2	./.	0/1:24,28:30:52:0.538:2	./.
chr3	8809222	rs4686302	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,100:30:198:0.505:2	0/1:96,99:29:195:0.508:2	0/1:66,42:30:108:0.389:2	./.	./.
chr3	8809703	rs2228485	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,27:30:27:1.00:2	0/1:1,3:30:4:0.750:2	0/1:0,56:30:56:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,50:28:50:1.00:2	0/1:25,32:30:57:0.561:2	0/1:30,28:30:58:0.483:2	0/1:29,27:31:56:0.482:2	0/1:0,42:30:42:1.00:2	0/1:0,33:31:33:1.00:2
chr3	8955389	rs373572	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:33:99:1.00:2	0/1:0,35:32:35:1.00:2	0/1:4,5:32:9:0.556:2	0/1:51,40:32:91:0.440:2	0/1:0,78:31:78:1.00:2	0/1:52,41:31:93:0.441:2	0/1:0,59:32:59:1.00:2	0/1:55,62:33:117:0.530:2	0/1:0,108:33:108:1.00:2	0/1:55,50:33:105:0.476:2	0/1:3,126:32:129:0.977:2
chr3	9005078	rs615967	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,35:31:35:1.00:2	0/1:6,3:31:9:0.333:2	0/1:43,62:31:105:0.590:2	0/1:1,63:31:64:0.984:2	0/1:40,38:31:78:0.487:2	./.	0/1:39,61:31:100:0.610:2	0/1:1,71:32:72:0.986:2	0/1:31,39:31:70:0.557:2	0/1:26,28:31:54:0.519:2
chr3	9032348	rs201777874	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,51:28:98:0.520:2	0/1:32,42:30:75:0.568:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9055172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.
chr3	9079714	rs867528	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,33:29:65:0.508:2	0/1:20,14:29:34:0.412:2	./.	./.	./.	./.	./.	./.	0/1:19,20:30:39:0.513:2	./.	0/1:25,32:28:57:0.561:2
chr3	9099989	rs61747289	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,75:32:139:0.540:2	./.
chr3	9166594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.
chr3	9166595	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.
chr3	9406836	rs1054975	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,36:29:75:0.480:2	0/1:29,25:29:54:0.463:2	0/1:11,13:31:24:0.542:2	0/1:28,50:29:78:0.641:2	0/1:2,67:28:69:0.971:2	0/1:0,80:30:80:1.00:2	0/1:46,33:29:79:0.418:2	./.	0/1:0,103:30:103:1.00:2	0/1:34,26:28:60:0.433:2	0/1:0,89:29:89:1.00:2
chr3	9422210	rs2596916	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,49:33:91:0.538:2	0/1:17,24:33:41:0.585:2	0/1:8,9:33:17:0.529:2	0/1:66,58:33:124:0.468:2	0/1:0,55:32:55:1.00:2	0/1:0,76:33:76:1.00:2	0/1:40,21:33:61:0.344:2	./.	0/1:0,101:34:101:1.00:2	0/1:49,28:33:77:0.364:2	0/1:1,143:33:145:0.993:2
chr3	9425911	rs1129170	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,23:33:40:0.575:2	0/1:13,4:32:17:0.235:2	./.	0/1:18,20:32:38:0.526:2	0/1:0,27:31:27:1.00:2	0/1:0,21:31:21:1.00:2	0/1:20,9:31:29:0.310:2	./.	0/1:0,31:32:31:1.00:2	0/1:25,18:31:43:0.419:2	0/1:0,35:32:35:1.00:2
chr3	9425944	rs1046788	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.	0/1:0,67:30:67:1.00:2	./.	0/1:24,30:30:54:0.556:2	./.
chr3	9426224	rs1129174	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:191,4:33:195:0.021:2	./.	0/1:16,9:32:25:0.360:2	0/1:100,96:31:196:0.490:2	./.	./.	./.	0/1:2,179:31:181:0.989:2	./.	0/1:107,86:32:193:0.446:2	./.
chr3	9517369	rs11542009	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:32:57:0.421:2	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9517577	rs17747739	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	0/1:74,59:32:133:0.444:2	./.	./.
chr3	9543919	rs367990615	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr3	9719654	rs188918962	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,44:30:87:0.506:2	./.	./.
chr3	9739461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9746481	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:24:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9747392	rs78883514	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9768336	rs3868893	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	0/1:2,152:32:154:0.987:2	./.	./.	0/1:90,74:32:165:0.451:2	./.
chr3	9769008	rs3891072	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	0/1:1,58:31:59:0.983:2	./.	./.	0/1:19,33:31:52:0.635:2	./.
chr3	9771223	rs200361798	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,3:34:69:0.043:2
chr3	9781473	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,93:29:169:0.554:2	./.	./.	./.	./.	./.
chr3	9785266	rs142213134	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,30:32:45:0.667:2	./.	./.
chr3	9798475	rs113561019	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,60:31:127:0.472:2	0/1:47,37:32:84:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9798773	rs1052133	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,31:32:32:0.969:2	0/1:30,23:32:53:0.434:2	./.	0/1:25,16:34:41:0.390:2	./.
chr3	9854937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.
chr3	9867625	rs3732527	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:32:158:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,151:32:151:1.00:2	0/1:1,154:32:155:0.994:2	0/1:0,162:31:162:1.00:2	./.	0/1:79,75:32:154:0.487:2	0/1:1,162:32:163:0.994:2	./.	0/1:1,159:31:162:0.994:2
chr3	9870857	rs2290303	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,81:31:83:0.976:2	0/1:1,58:31:59:0.983:2	0/1:7,11:31:18:0.611:2	0/1:90,68:30:158:0.430:2	0/1:6,174:30:180:0.967:2	0/1:0,156:30:156:1.00:2	./.	./.	0/1:79,68:31:147:0.463:2	0/1:74,45:31:119:0.378:2	0/1:2,106:31:108:0.981:2
chr3	9871030	rs2290305	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,61:32:63:0.968:2	0/1:0,24:32:24:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,95:31:96:0.990:2	0/1:2,87:32:89:0.978:2	./.	0/1:64,46:31:110:0.418:2	0/1:0,51:33:51:1.00:2	0/1:30,19:33:49:0.388:2	0/1:0,45:32:45:1.00:2
chr3	9874914	rs115917139	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,26:31:64:0.406:2	./.	./.	./.	./.	./.
chr3	9876919	rs1057278	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.	./.	0/1:30,25:30:55:0.455:2	0/1:23,18:31:41:0.439:2	./.	./.
chr3	9876987	rs1057281	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,10:32:34:0.294:2	./.	./.	./.	0/1:14,17:30:31:0.548:2	0/1:33,11:32:44:0.250:2	./.	./.
chr3	9881922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	./.	./.
chr3	9883679	rs149627688	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.
chr3	9908935	rs17222536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,47:31:114:0.412:2	./.	./.	./.	./.	./.
chr3	9918861	rs456168	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.
chr3	9920138	rs17851444	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,52:31:127:0.409:2	./.	./.	./.	0/1:4,141:32:145:0.972:2	0/1:100,55:33:156:0.355:2	0/1:62,58:32:120:0.483:2	./.
chr3	9934605	rs279553	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:32:140:1.00:2	0/1:0,104:31:105:1.00:2	0/1:2,14:31:16:0.875:2	0/1:91,103:32:195:0.531:2	0/1:2,192:31:195:0.990:2	./.	0/1:98,99:31:197:0.503:2	./.	0/1:98,83:32:181:0.459:2	0/1:74,81:32:155:0.523:2	0/1:0,185:31:185:1.00:2
chr3	9952706	rs279572	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,31:29:31:1.00:2	0/1:1,3:30:4:0.750:2	0/1:24,30:30:54:0.556:2	0/1:31,30:30:61:0.492:2	./.	0/1:30,31:30:61:0.508:2	./.	0/1:20,30:30:50:0.600:2	0/1:19,18:31:37:0.486:2	0/1:40,28:28:68:0.412:2
chr3	9952788	rs279571	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,70:31:71:0.986:2	0/1:0,40:30:40:1.00:2	0/1:3,7:31:10:0.700:2	0/1:53,25:30:78:0.321:2	0/1:25,27:30:52:0.519:2	./.	0/1:47,27:31:74:0.365:2	./.	0/1:35,33:30:69:0.485:2	0/1:29,35:30:64:0.547:2	0/1:1,86:29:87:0.989:2
chr3	9956279	rs455863	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,31:32:31:1.00:2	0/1:5,7:31:12:0.583:2	0/1:47,65:32:112:0.580:2	0/1:98,61:32:159:0.384:2	./.	0/1:76,67:32:143:0.469:2	./.	0/1:63,53:33:117:0.457:2	0/1:57,37:33:94:0.394:2	0/1:42,48:32:90:0.533:2
chr3	9957455	rs1056286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr3	9959713	rs4686383	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,38:32:73:0.521:2	0/1:39,26:33:65:0.400:2	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	0/1:64,70:33:134:0.522:2	./.	0/1:41,48:32:89:0.539:2
chr3	9960070	rs708567	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:35,29:30:64:0.453:2	0/1:42,16:29:58:0.276:2	./.	0/1:38,32:30:70:0.457:2	./.	0/1:30,26:31:56:0.464:2	0/1:31,22:30:53:0.415:2	0/1:35,27:31:62:0.435:2
chr3	9965582	rs75692599	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,50:32:110:0.455:2	./.	./.	./.
chr3	9970031	rs279549	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:29:9:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,8:31:8:1.00:2
chr3	9970158	rs279548	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,8:30:8:1.00:2	./.	./.	0/1:5,3:31:8:0.375:2	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.
chr3	9974315	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr3	9974543	rs148575246	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,22:31:44:0.500:2	./.	./.	./.	./.	./.	./.
chr3	9974868	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:32:39:0.579:2	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9975247	rs183956	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,4:32:4:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:0,5:31:5:1.00:2	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:33:4:1.00:2
chr3	9976159	rs279552	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,45:32:45:1.00:2
chr3	9985096	rs76764016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:31:24:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9985656	rs3774207	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,31:32:61:0.508:2	0/1:23,23:31:46:0.500:2	./.	./.	./.	0/1:47,39:30:86:0.453:2	./.	./.	./.	0/1:30,26:31:56:0.464:2	0/1:56,55:32:111:0.495:2
chr3	9988175	rs61740128	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,19:29:47:0.404:2	./.	./.	./.	0/1:16,28:31:44:0.636:2	./.	0/1:9,20:29:29:0.690:2	./.
chr3	9990800	rs59465469	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:31:31:0.419:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	0/1:21,14:33:35:0.400:2	./.	./.	./.	0/1:18,17:32:35:0.486:2	0/1:17,13:30:31:0.433:2
chr3	9991101	rs55847233	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:33:25:0.480:2	0/1:10,9:33:19:0.474:2	./.	./.	./.	0/1:38,22:32:60:0.367:2	./.	./.	./.	0/1:24,17:34:41:0.415:2	0/1:25,29:32:54:0.537:2
chr3	9991163	rs55847610	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,19:32:32:0.594:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	0/1:24,13:31:37:0.351:2	./.	./.	./.	0/1:19,7:33:26:0.269:2	0/1:16,11:33:27:0.407:2
chr3	9991388	rs279601	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,109:33:109:1.00:2	0/1:1,107:32:108:0.991:2	0/1:0,136:32:137:1.00:2	0/1:0,156:32:156:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,110:32:110:1.00:2
chr3	10049098	rs200467492	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,11:12:54:0.204:2	./.	./.	./.	0/1:39,10:19:50:0.204:2	./.	0/1:61,12:13:73:0.164:2	0/1:76,11:14:87:0.126:2	0/1:59,15:16:75:0.203:2	0/1:44,8:18:52:0.154:2	0/1:61,17:18:78:0.218:2
chr3	10049287	rs2272118	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,79:27:146:0.541:2	0/1:49,44:27:93:0.473:2	./.	./.	./.	0/1:76,69:27:145:0.476:2	./.	./.	./.	0/1:104,57:28:161:0.354:2	0/1:78,72:27:150:0.480:2
chr3	10088266	rs72492997	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,9:32:172:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	10088299	rs112887807	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,11:29:173:0.064:2	0/1:152,17:31:169:0.101:2	0/1:58,6:30:64:0.094:2	0/1:164,18:30:182:0.099:2	0/1:178,9:29:187:0.048:2	0/1:137,36:30:173:0.208:2	0/1:151,23:30:174:0.132:2	0/1:176,11:31:187:0.059:2	0/1:164,18:29:182:0.099:2	0/1:143,21:30:165:0.128:2	0/1:159,21:30:180:0.117:2
chr3	10088308	rs72492998	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,19:33:179:0.107:2	0/1:159,23:32:182:0.126:2	0/1:57,6:32:63:0.095:2	0/1:162,26:33:188:0.138:2	0/1:172,15:32:187:0.080:2	0/1:130,49:32:179:0.274:2	0/1:143,34:33:178:0.192:2	0/1:173,16:32:189:0.085:2	0/1:165,20:32:185:0.108:2	0/1:144,25:32:169:0.148:2	0/1:163,26:33:189:0.138:2
chr3	10088343	rs73126218	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,30:32:191:0.157:2	0/1:137,22:31:160:0.138:2	0/1:46,6:30:52:0.115:2	0/1:157,31:32:188:0.165:2	0/1:154,29:32:183:0.158:2	0/1:128,58:32:186:0.312:2	0/1:140,50:32:190:0.263:2	0/1:177,18:32:195:0.092:2	0/1:163,25:32:188:0.133:2	0/1:128,51:32:179:0.285:2	0/1:156,35:32:191:0.183:2
chr3	10088404	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,12:31:133:0.090:2	0/1:100,9:32:109:0.083:2	./.	0/1:91,11:32:102:0.108:2	0/1:125,16:31:141:0.113:2	0/1:102,17:30:119:0.143:2	0/1:96,18:31:114:0.158:2	./.	0/1:103,4:34:107:0.037:2	0/1:96,23:32:119:0.193:2	0/1:108,12:32:120:0.100:2
chr3	10089723	rs12330369	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,16:32:97:0.165:2	0/1:42,9:32:51:0.176:2	0/1:13,4:32:17:0.235:2	0/1:57,10:31:67:0.149:2	0/1:63,8:32:72:0.113:2	0/1:63,22:31:85:0.259:2	0/1:65,29:32:95:0.309:2	0/1:76,15:31:91:0.165:2	0/1:88,22:33:110:0.200:2	0/1:59,24:33:83:0.289:2	0/1:89,32:32:121:0.264:2
chr3	10091084	rs375412395	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,9:32:196:0.046:2	./.	./.	./.	./.	./.
chr3	10091153	rs35652360	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,13:30:171:0.076:2	./.	0/1:169,9:32:178:0.051:2	./.	./.	0/1:146,15:30:161:0.093:2	0/1:185,10:29:195:0.051:2
chr3	10094159	rs145522204	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,29:30:49:0.592:2	./.	./.	./.	0/1:29,35:29:64:0.547:2	./.	./.	./.
chr3	10106532	rs3864017	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,12:32:91:0.132:2	0/1:90,12:32:102:0.118:2	./.	./.	./.	0/1:74,18:32:92:0.196:2	./.
chr3	10142949	rs3172417	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:89,83:32:172:0.483:2	0/1:81,85:32:166:0.512:2	./.	./.	./.	0/1:77,93:33:170:0.547:2	./.	0/1:101,76:33:178:0.429:2
chr3	10146444	rs368053372	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.
chr3	10157468	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2
chr3	10251340	rs464286	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:29:23:1.00:2	0/1:0,16:29:16:1.00:2	./.	./.	./.	0/1:20,13:30:33:0.394:2	0/1:16,9:29:25:0.360:2	./.	0/1:30,13:30:43:0.302:2	./.	./.
chr3	10255002	rs35060588	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,29:28:56:0.518:2	./.	0/1:40,27:29:67:0.403:2	./.	./.	./.	./.
chr3	10264480	rs3844283	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,38:32:75:0.507:2	./.	0/1:36,39:31:75:0.520:2	./.	0/1:21,32:32:53:0.604:2	./.	./.
chr3	10276163	rs708035	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,91:31:91:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,150:31:150:1.00:2	0/1:83,63:31:146:0.432:2	0/1:0,147:31:147:1.00:2	./.	0/1:0,127:32:127:1.00:2	0/1:71,54:32:125:0.432:2	./.
chr3	10276185	rs11465927	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	0/1:90,66:32:156:0.423:2	./.	./.	./.	./.	./.	./.
chr3	10280465	rs9854688	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:30:90:0.444:2
chr3	10302172	rs394558	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,59:31:59:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,86:31:86:1.00:2	0/1:44,43:31:89:0.494:2	0/1:58,58:31:116:0.500:2	./.	0/1:0,73:31:73:1.00:2	0/1:36,20:31:56:0.357:2	0/1:27,27:31:54:0.500:2
chr3	10311939	rs2075352	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,73:32:75:0.973:2	0/1:3,31:33:34:0.912:2	0/1:8,3:33:11:0.273:2	./.	./.	0/1:14,45:32:59:0.763:2	./.	./.	./.	./.	./.
chr3	10312507	rs2075353	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,48:33:48:1.00:2	0/1:0,32:32:32:1.00:2	0/1:4,6:32:10:0.600:2	./.	./.	0/1:26,19:32:45:0.422:2	./.	./.	./.	./.	./.
chr3	10331457	rs696217	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,50:31:50:1.00:2	0/1:0,24:32:24:1.00:2	./.	./.	./.	0/1:27,29:30:56:0.518:2	./.	./.	./.	./.	./.
chr3	10353550	rs35670	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,35:31:36:0.972:2	./.	0/1:18,19:32:37:0.514:2	./.	0/1:29,30:34:59:0.508:2	0/1:22,8:29:30:0.267:2	0/1:18,10:32:28:0.357:2
chr3	10353626	rs35671	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:30:27:0.370:2	./.	0/1:4,166:31:170:0.976:2	./.	0/1:116,79:31:195:0.405:2	./.	0/1:84,64:33:148:0.432:2	0/1:57,46:31:103:0.447:2	0/1:70,62:31:132:0.470:2
chr3	10379923	rs35678	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:30:12:0.583:2	./.	0/1:2,81:31:83:0.976:2	./.	0/1:43,33:32:76:0.434:2	./.	0/1:0,70:32:70:1.00:2	0/1:20,29:33:49:0.592:2	0/1:34,38:32:72:0.528:2
chr3	10413601	rs2289273	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,181:30:184:0.984:2	0/1:0,158:31:158:1.00:2	./.	./.	./.	0/1:108,86:31:194:0.443:2	./.	./.	./.	./.	./.
chr3	10413715	rs2289274	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,151:31:153:0.987:2	0/1:3,94:32:97:0.969:2	0/1:18,12:30:30:0.400:2	./.	./.	0/1:99,73:31:172:0.424:2	./.	./.	./.	0/1:84,73:32:157:0.465:2	0/1:97,68:31:167:0.412:2
chr3	10420087	rs751122	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,38:32:38:1.00:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:30,26:31:56:0.464:2	0/1:24,14:33:38:0.368:2	./.	./.	0/1:0,48:33:48:1.00:2	0/1:36,4:29:40:0.100:2	./.
chr3	10443827	rs13084776	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	./.	0/1:20,15:32:35:0.429:2	0/1:31,29:31:61:0.483:2
chr3	10885920	rs2304725	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,141:30:146:0.966:2	0/1:3,155:31:158:0.981:2	./.	0/1:58,46:31:104:0.442:2	./.
chr3	10960044	rs143086604	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,12:31:196:0.061:2	./.	./.	./.	./.	./.	./.
chr3	10967739	rs2272395	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,129:32:129:1.00:2	0/1:91,83:32:175:0.477:2	0/1:0,158:32:159:1.00:2	./.	./.	0/1:79,68:33:147:0.463:2	0/1:66,46:32:112:0.411:2	0/1:0,136:31:136:1.00:2
chr3	10974903	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.
chr3	10976876	rs2245532	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,66:31:133:0.496:2	0/1:1,122:31:123:0.992:2	./.	./.	0/1:50,56:31:106:0.528:2	0/1:0,64:31:64:1.00:2	0/1:0,99:30:99:1.00:2
chr3	11059130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.
chr3	11064024	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.
chr3	11301791	rs2067468	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:31:56:0.482:2	./.	./.	./.	./.	./.
chr3	11302884	rs1809049	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:31:50:0.380:2	./.	./.	./.	0/1:12,15:31:27:0.556:2	./.
chr3	11302933	rs346068	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,7:33:21:0.333:2	0/1:9,12:33:21:0.571:2	./.	0/1:0,18:33:18:1.00:2	./.	0/1:0,30:33:30:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,25:32:25:1.00:2	0/1:5,4:32:9:0.444:2	0/1:0,32:31:32:1.00:2
chr3	11303437	rs346069	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,2:33:2:1.00:2	0/1:0,8:30:8:1.00:2	./.	./.	./.	0/1:0,3:34:3:1.00:2
chr3	11303874	rs346070	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,74:32:179:0.416:2	0/1:54,53:32:107:0.495:2	0/1:2,33:32:35:0.943:2	0/1:0,156:33:156:1.00:2	./.	0/1:1,176:32:177:0.994:2	0/1:1,178:33:179:0.994:2	0/1:3,181:32:184:0.984:2	0/1:1,177:33:178:0.994:2	0/1:113,63:33:176:0.358:2	0/1:0,167:32:167:1.00:2
chr3	11304575	rs3732941	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,55:29:127:0.433:2	./.	./.	./.	0/1:43,50:30:93:0.538:2	./.
chr3	11400019	rs36117895	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:30:81:0.457:2	./.	./.	./.	./.	./.
chr3	11402126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.
chr3	11596302	rs8154	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,32:29:51:0.627:2	0/1:13,15:27:28:0.536:2	0/1:6,7:30:13:0.538:2	./.	0/1:1,68:28:69:0.986:2	0/1:24,20:28:44:0.455:2	0/1:42,31:28:73:0.425:2	./.	0/1:24,22:28:46:0.478:2	0/1:13,9:30:22:0.409:2	./.
chr3	11596348	rs14016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	0/1:19,17:31:36:0.472:2	./.	./.	./.	./.	./.
chr3	11643465	rs2276749	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,89:32:89:1.00:2
chr3	11871215	rs11551661	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:30:43:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr3	11880760	rs7641243	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,25:34:50:0.500:2	./.	0/1:15,12:34:27:0.444:2	./.	./.	0/1:33,25:34:58:0.431:2	./.	./.
chr3	11887991	rs408600	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,37:31:37:1.00:2	0/1:5,4:31:9:0.444:2	0/1:75,59:32:134:0.440:2	0/1:0,100:32:100:1.00:2	0/1:43,54:32:97:0.557:2	0/1:87,57:32:144:0.396:2	0/1:87,54:32:142:0.383:2	0/1:60,67:33:128:0.528:2	0/1:0,72:32:72:1.00:2	0/1:49,35:29:84:0.417:2
chr3	12046076	rs2618395	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,16:29:16:1.00:2
chr3	12229015	rs794999	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:27:32:1.00:2	0/1:0,24:27:24:1.00:2	./.	0/1:1,37:27:38:0.974:2	0/1:0,32:28:32:1.00:2	./.	0/1:0,26:29:26:1.00:2	0/1:1,30:28:31:0.968:2	0/1:29,21:30:50:0.420:2	0/1:0,35:27:35:1.00:2	0/1:11,7:30:18:0.389:2
chr3	12229092	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:34:131:0.031:2	./.	./.	./.	./.
chr3	12232074	rs310764	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:30:64:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,112:30:112:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,91:31:91:1.00:2
chr3	12393125	rs1801282	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:31:70:0.429:2	./.	./.	./.	0/1:64,42:29:106:0.396:2
chr3	12475557	rs3856806	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,66:31:121:0.545:2	./.	./.	./.	./.	./.	./.	0/1:50,49:32:99:0.495:2
chr3	12531421	rs12495784	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,18:31:55:0.327:2	./.	./.	./.	./.	0/1:29,12:32:42:0.293:2
chr3	12531461	rs78685815	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,22:32:65:0.338:2	./.	./.	./.	./.	0/1:30,32:33:62:0.516:2
chr3	12544779	rs77899976	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,68:32:137:0.496:2
chr3	12544829	rs33955793	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,70:31:142:0.493:2	./.	./.	./.	0/1:66,68:32:135:0.507:2	./.	./.
chr3	12544856	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.
chr3	12545091	rs3796329	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,52:28:110:0.473:2
chr3	12560560	rs17036879	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:31:40:0.425:2
chr3	12613866	rs2648307	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:28:52:1.00:2	0/1:0,22:29:22:1.00:2	./.	0/1:0,43:29:43:1.00:2	0/1:24,22:28:46:0.478:2	0/1:2,59:28:61:0.967:2	0/1:46,27:29:73:0.370:2	./.	0/1:0,48:29:48:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,41:28:41:1.00:2
chr3	12641737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.
chr3	12660185	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.
chr3	12838293	rs12631514	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,42:31:42:1.00:2	./.	0/1:0,79:32:79:1.00:2	0/1:0,75:30:75:1.00:2	0/1:50,46:32:96:0.479:2	0/1:60,50:32:110:0.455:2	0/1:0,106:31:106:1.00:2	0/1:62,38:32:100:0.380:2	0/1:42,40:32:82:0.488:2	0/1:41,46:33:87:0.529:2
chr3	12848822	rs11718898	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,87:33:90:0.989:2	0/1:0,62:32:62:1.00:2	0/1:9,7:32:16:0.438:2	0/1:0,176:33:176:1.00:2	0/1:1,188:32:189:0.995:2	0/1:0,166:32:166:1.00:2	0/1:104,88:32:192:0.458:2	0/1:1,190:32:191:0.995:2	0/1:90,83:33:173:0.480:2	0/1:74,71:32:145:0.490:2	0/1:0,115:33:115:1.00:2
chr3	12848913	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.
chr3	12856856	rs2305398	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,159:29:160:0.994:2	0/1:1,96:29:97:0.990:2	0/1:12,14:29:26:0.538:2	0/1:2,178:29:180:0.989:2	0/1:1,189:29:190:0.995:2	0/1:1,181:29:182:0.995:2	0/1:97,97:28:194:0.500:2	0/1:5,183:28:188:0.973:2	0/1:86,99:30:185:0.535:2	0/1:91,102:29:193:0.528:2	0/1:1,180:27:181:0.994:2
chr3	12857493	rs2305397	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:2,36:31:38:0.947:2	./.	0/1:0,108:31:108:1.00:2	0/1:1,127:32:128:0.992:2	0/1:63,50:31:113:0.442:2	0/1:74,66:32:140:0.471:2	0/1:8,129:31:137:0.942:2	0/1:65,55:33:121:0.458:2	0/1:57,28:32:85:0.329:2	0/1:49,46:32:95:0.484:2
chr3	12858028	rs3732675	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,35:32:35:1.00:2	./.	0/1:0,100:32:100:1.00:2	0/1:1,130:32:131:0.992:2	0/1:0,89:32:89:1.00:2	0/1:73,54:32:127:0.425:2	0/1:1,120:32:121:0.992:2	0/1:68,38:33:106:0.358:2	0/1:41,32:32:73:0.438:2	0/1:54,37:30:91:0.407:2
chr3	12858687	rs62637653	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:31:50:0.540:2
chr3	12858780	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:29:121:0.033:2	./.	./.
chr3	12858822	rs3732677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,51:29:114:0.447:2	./.	./.	./.	./.	./.
chr3	12858966	rs17037287	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,10:30:29:0.345:2	./.	./.	./.	./.	./.	./.
chr3	12859004	rs3732678	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:1,34:31:35:0.971:2	./.	0/1:0,72:32:72:1.00:2	0/1:3,53:32:56:0.946:2	0/1:0,46:32:46:1.00:2	0/1:26,29:30:55:0.527:2	0/1:0,52:31:52:1.00:2	0/1:40,38:32:78:0.487:2	0/1:34,13:32:47:0.277:2	0/1:1,36:31:37:0.973:2
chr3	12859007	rs183560231	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:29:38:0.447:2
chr3	12861586	rs4684883	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,12:33:46:0.261:2	0/1:43,20:32:63:0.317:2	./.	./.	./.	0/1:34,17:34:51:0.333:2	./.	./.
chr3	12861608	rs3817121	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,17:32:54:0.315:2	0/1:53,33:32:87:0.384:2	./.	./.	./.	0/1:43,23:32:66:0.348:2	./.	./.
chr3	12875443	rs12629133	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,2:31:2:1.00:2	0/1:19,18:31:37:0.486:2	0/1:0,35:29:36:1.00:2	0/1:15,20:29:35:0.571:2	0/1:28,10:30:38:0.263:2	./.	0/1:10,17:30:27:0.630:2	0/1:17,19:32:36:0.528:2	0/1:0,44:30:44:1.00:2
chr3	12877657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.
chr3	12962074	rs35319679	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:65,42:32:107:0.393:2	./.	0/1:38,23:32:61:0.377:2	./.	0/1:48,36:32:84:0.429:2	./.	./.	./.
chr3	12977060	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	12977631	rs151018442	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:31:36:0.278:2	./.	./.	./.
chr3	12983083	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.
chr3	12983284	rs200380325	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.
chr3	13361287	rs354478	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,81:31:81:1.00:2	0/1:55,34:31:89:0.382:2	0/1:65,41:30:106:0.387:2	0/1:74,37:31:111:0.333:2	0/1:1,100:31:101:0.990:2	0/1:2,83:31:85:0.976:2	0/1:0,82:32:82:1.00:2	./.
chr3	13361391	rs354479	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,55:31:55:1.00:2	0/1:22,20:30:42:0.476:2	0/1:1,56:30:57:0.982:2	0/1:23,22:31:45:0.489:2	0/1:1,61:31:62:0.984:2	0/1:0,57:31:57:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,54:31:54:1.00:2
chr3	13364876	rs514084	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,46:31:47:0.979:2	0/1:20,16:32:36:0.444:2	0/1:27,26:31:53:0.491:2	0/1:39,34:31:73:0.466:2	0/1:0,56:31:56:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,41:32:41:1.00:2	./.
chr3	13367406	rs665064	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,53:31:53:1.00:2	./.	0/1:31,38:31:69:0.551:2	0/1:38,26:32:64:0.406:2	0/1:2,55:32:57:0.965:2	0/1:1,59:33:60:0.983:2	0/1:0,25:32:25:1.00:2	./.
chr3	13368892	rs2271509	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,73:31:73:1.00:2	0/1:2,35:31:37:0.946:2	0/1:0,12:31:12:1.00:2	./.	0/1:67,65:30:132:0.492:2	0/1:62,61:31:123:0.496:2	0/1:70,73:32:143:0.510:2	./.	./.	./.	0/1:1,106:32:107:0.991:2
chr3	13379400	rs3773302	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,30:31:30:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:19,11:30:30:0.367:2	0/1:35,26:31:61:0.426:2	./.	./.	0/1:39,3:33:42:0.071:2	0/1:0,16:32:16:1.00:2
chr3	13383540	rs2271504	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:33:54:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,25:33:25:1.00:2	0/1:51,41:33:92:0.446:2	0/1:0,60:32:60:1.00:2	0/1:50,39:33:89:0.438:2	0/1:43,45:33:88:0.511:2	0/1:91,6:32:97:0.062:2	0/1:53,50:33:103:0.485:2	./.	0/1:0,98:33:98:1.00:2
chr3	13395475	rs2280085	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:32:190:0.537:2	./.	./.	./.	./.	0/1:1,140:32:141:0.993:2
chr3	13395579	rs2280084	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,88:32:89:0.989:2	0/1:3,83:32:86:0.965:2	0/1:0,17:31:17:1.00:2	0/1:50,75:32:125:0.600:2	0/1:0,167:31:167:1.00:2	0/1:68,73:32:141:0.518:2	0/1:53,76:31:129:0.589:2	0/1:142,11:32:153:0.072:2	0/1:54,73:32:127:0.575:2	./.	0/1:0,106:32:106:1.00:2
chr3	13399786	rs6795271	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,95:31:95:1.00:2	0/1:1,49:31:50:0.980:2	0/1:0,12:31:12:1.00:2	./.	0/1:67,87:31:154:0.565:2	./.	0/1:42,47:30:89:0.528:2	./.	./.	./.	./.
chr3	13407556	rs3732671	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:27:58:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,3:30:3:1.00:2	0/1:34,29:29:63:0.460:2	0/1:0,72:28:72:1.00:2	0/1:37,35:29:72:0.486:2	0/1:38,39:28:77:0.506:2	./.	0/1:58,34:29:92:0.370:2	./.	0/1:0,49:27:49:1.00:2
chr3	13413494	rs74681769	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,42:33:95:0.442:2	0/1:33,23:32:56:0.411:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	13418992	rs150173648	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,54:29:105:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr3	13421150	rs7628051	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,92:30:92:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,22:30:22:1.00:2	./.	0/1:0,78:30:78:1.00:2	0/1:52,52:30:104:0.500:2	0/1:49,42:30:91:0.462:2	0/1:110,5:31:115:0.043:2	./.	./.	0/1:0,107:29:107:1.00:2
chr3	13545697	rs17038240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,63:32:120:0.525:2	./.	./.	./.	./.	./.
chr3	13612020	rs3732667	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:32:19:0.368:2
chr3	13612107	rs17038305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,22:33:31:0.710:2
chr3	13612786	rs111389908	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,29:31:47:0.617:2	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	13612936	rs3732666	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,21:32:41:0.512:2	./.	./.	./.	./.	0/1:10,13:33:23:0.565:2	./.	0/1:11,9:33:20:0.450:2
chr3	13613015	rs3796318	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:31:41:0.390:2
chr3	13613064	rs7623097	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,21:33:66:0.318:2
chr3	13613079	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.
chr3	13670481	rs2242023	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,120:30:120:1.00:2	0/1:0,69:30:69:1.00:2	0/1:11,11:30:22:0.500:2	./.	0/1:1,133:30:134:0.993:2	0/1:0,158:30:158:1.00:2	0/1:113,40:29:153:0.261:2	0/1:108,68:30:176:0.386:2	0/1:0,154:31:154:1.00:2	./.	0/1:65,49:29:114:0.430:2
chr3	13670508	rs41283996	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,94:29:125:0.752:2	0/1:56,98:30:154:0.636:2	./.	0/1:65,52:30:117:0.444:2	./.
chr3	13670536	rs9843344	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,60:31:60:1.00:2	0/1:0,36:31:36:1.00:2	0/1:7,5:30:12:0.417:2	./.	0/1:0,54:31:54:1.00:2	0/1:1,79:31:80:0.988:2	0/1:74,17:32:92:0.187:2	0/1:71,33:32:104:0.317:2	0/1:0,65:32:65:1.00:2	./.	0/1:22,17:32:39:0.436:2
chr3	13670776	rs4684968	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,61:29:61:1.00:2	0/1:0,37:29:37:1.00:2	0/1:9,3:26:12:0.250:2	./.	0/1:0,78:28:78:1.00:2	0/1:71,44:29:115:0.383:2	0/1:43,38:29:81:0.469:2	0/1:56,31:27:87:0.356:2	0/1:3,61:29:64:0.953:2	./.	0/1:34,21:28:55:0.382:2
chr3	13672296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.
chr3	13679203	rs1061375	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,80:32:194:0.412:2	0/1:90,55:32:145:0.379:2	./.	0/1:78,108:32:187:0.581:2	./.	./.	0/1:1,120:33:121:0.992:2
chr3	13679328	rs373511143	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:31:72:0.069:2	./.
chr3	13679335	rs1061376	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,65:31:136:0.478:2	0/1:50,42:31:92:0.457:2	./.	0/1:63,59:31:122:0.484:2	./.	./.	0/1:0,90:31:90:1.00:2
chr3	13896140	rs3762719	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:29:62:0.387:2	./.	./.	0/1:26,16:28:42:0.381:2	./.
chr3	13896284	rs12639607	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	./.	./.	0/1:11,15:32:26:0.577:2	./.
chr3	14174427	rs4685076	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,44:31:78:0.564:2	0/1:26,14:30:40:0.350:2	./.	./.	0/1:31,34:30:65:0.523:2	./.	0/1:39,54:30:93:0.581:2	./.	0/1:47,55:31:102:0.539:2	0/1:46,30:30:76:0.395:2	0/1:45,27:30:72:0.375:2
chr3	14175262	rs2340917	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,41:29:91:0.451:2	0/1:31,21:29:52:0.404:2	./.	./.	0/1:44,52:29:96:0.542:2	./.	0/1:51,45:30:96:0.469:2	./.	0/1:66,53:30:119:0.445:2	0/1:60,45:30:105:0.429:2	0/1:51,58:29:109:0.532:2
chr3	14180731	rs113449357	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:31:109:0.477:2	./.	./.	./.	./.
chr3	14187449	rs2228001	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,20:31:49:0.408:2	0/1:17,15:31:32:0.469:2	./.	0/1:27,22:31:49:0.449:2	0/1:0,28:32:28:1.00:2	./.	0/1:1,46:31:47:0.979:2	./.	0/1:19,29:32:48:0.604:2	0/1:0,34:31:34:1.00:2	0/1:0,47:31:47:1.00:2
chr3	14193889	rs2227998	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,26:32:65:0.400:2	0/1:17,8:32:25:0.320:2	./.	./.	0/1:51,38:32:89:0.427:2	./.	./.	./.	0/1:40,38:34:78:0.487:2	0/1:45,30:32:75:0.400:2	0/1:51,24:32:75:0.320:2
chr3	14197987	rs2958057	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,143:32:144:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,167:31:167:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,153:32:153:1.00:2
chr3	14214524	rs2229089	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,28:32:76:0.368:2	./.	./.	./.	./.
chr3	14547182	rs61731938	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:30:38:0.421:2	./.	0/1:26,11:33:37:0.297:2	./.	./.
chr3	14547198	rs61731939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,13:30:22:0.591:2	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.
chr3	14551444	rs9845816	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,14:32:23:0.609:2	0/1:20,9:32:29:0.310:2	0/1:2,3:33:5:0.600:2	0/1:15,20:32:35:0.571:2	0/1:20,20:33:40:0.500:2	0/1:20,24:32:44:0.545:2	0/1:0,47:32:47:1.00:2	0/1:11,17:33:28:0.607:2	0/1:20,11:34:31:0.355:2	0/1:16,13:33:29:0.448:2	./.
chr3	14552994	rs4685168	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,41:32:66:0.621:2	0/1:19,20:31:39:0.513:2	0/1:1,6:32:7:0.857:2	0/1:42,30:33:73:0.417:2	0/1:1,71:31:72:0.986:2	0/1:0,89:31:89:1.00:2	0/1:1,99:33:100:0.990:2	0/1:46,54:32:100:0.540:2	0/1:39,45:33:84:0.536:2	0/1:0,81:32:82:1.00:2	0/1:45,37:32:82:0.451:2
chr3	14555216	rs4685171	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,16:30:37:0.432:2	0/1:13,12:31:25:0.480:2	0/1:3,3:29:6:0.500:2	0/1:51,45:30:96:0.469:2	0/1:67,30:30:97:0.309:2	0/1:37,57:30:94:0.606:2	0/1:1,73:31:75:0.986:2	0/1:59,60:30:119:0.504:2	0/1:41,37:31:78:0.474:2	0/1:41,26:30:67:0.388:2	./.
chr3	14555811	rs4613440	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,8:30:26:0.308:2	0/1:13,6:31:19:0.316:2	./.	0/1:27,18:31:45:0.400:2	0/1:40,20:32:60:0.333:2	0/1:48,25:32:74:0.342:2	0/1:1,31:32:32:0.969:2	0/1:38,35:31:73:0.479:2	0/1:22,25:32:47:0.532:2	0/1:13,18:33:31:0.581:2	./.
chr3	14563237	rs7645232	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,36:30:59:0.610:2	0/1:20,23:31:43:0.535:2	./.	./.	./.	./.	0/1:15,35:30:50:0.700:2	./.	./.	./.	./.
chr3	14563258	rs4234526	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:30:33:0.364:2	0/1:1,23:29:24:0.958:2	0/1:29,16:30:45:0.356:2	./.	0/1:17,7:31:24:0.292:2	./.	0/1:21,10:29:31:0.323:2	./.
chr3	14581885	rs200230523	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,54:31:85:0.635:2	./.	./.
chr3	14703156	rs187313760	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	./.	./.	./.	./.
chr3	14712473	rs1901	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,42:31:85:0.494:2	0/1:21,42:31:63:0.667:2	0/1:0,7:32:7:1.00:2	./.	0/1:2,57:31:59:0.966:2	./.	./.	./.	./.	0/1:48,44:32:92:0.478:2	0/1:0,98:31:98:1.00:2
chr3	14724345	rs17040154	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	./.	./.	./.	./.	./.	./.
chr3	14724413	rs9821143	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,22:32:63:0.349:2	0/1:11,18:32:29:0.621:2	0/1:1,6:30:7:0.857:2	./.	0/1:0,63:31:63:1.00:2	./.	./.	./.	./.	0/1:44,16:31:60:0.267:2	0/1:0,53:32:53:1.00:2
chr3	14745857	rs17040196	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:0,49:31:49:1.00:2	0/1:34,31:30:65:0.477:2	0/1:32,30:32:62:0.484:2	0/1:49,38:32:87:0.437:2	0/1:0,65:32:65:1.00:2	0/1:22,36:31:58:0.621:2	0/1:1,65:31:66:0.985:2
chr3	14755572	rs6765537	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:0,56:27:57:1.00:2	0/1:56,45:28:101:0.446:2	0/1:51,59:28:110:0.536:2	0/1:88,56:28:144:0.389:2	0/1:1,74:29:75:0.987:2	0/1:57,39:29:96:0.406:2	0/1:0,81:28:81:1.00:2
chr3	14755617	rs6790129	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:0,41:30:41:1.00:2	0/1:39,30:30:69:0.435:2	0/1:31,47:30:78:0.603:2	0/1:62,41:30:103:0.398:2	0/1:3,45:31:48:0.938:2	0/1:30,34:31:64:0.531:2	0/1:0,59:30:59:1.00:2
chr3	14770001	rs35363400	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,20:32:52:0.385:2	./.	./.	./.	./.	./.	./.
chr3	14860735	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:30:80:0.050:2	./.	./.	./.	./.
chr3	14861847	rs201245272	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:34:57:0.053:2	./.	./.
chr3	14862121	rs61751584	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:28:59:0.492:2	./.	./.	./.	./.	./.	./.	./.
chr3	14862376	rs144177006	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2	./.
chr3	14939167	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.	./.	./.
chr3	14939471	rs67571220	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,51:31:96:0.531:2	./.	./.	./.	./.	./.	0/1:24,26:31:50:0.520:2
chr3	14939479	rs2164356	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,44:32:44:1.00:2	0/1:4,6:31:10:0.600:2	0/1:1,69:31:70:0.986:2	0/1:55,46:30:101:0.455:2	0/1:42,39:31:81:0.481:2	0/1:45,55:32:100:0.550:2	0/1:52,61:31:113:0.540:2	0/1:0,76:32:76:1.00:2	0/1:32,28:31:60:0.467:2	0/1:29,26:31:55:0.473:2
chr3	15080696	rs2230444	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,39:32:100:0.390:2	0/1:37,33:32:70:0.471:2	0/1:68,38:32:106:0.358:2	./.	./.	./.	./.
chr3	15115603	rs201337565	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr3	15272045	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:31:164:0.024:2	./.
chr3	15276541	rs17539942	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,25:33:60:0.417:2	./.	./.	./.	./.	./.	./.	0/1:40,33:34:73:0.452:2
chr3	15276562	rs35189473	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,45:32:93:0.484:2	./.	./.	./.	./.	./.
chr3	15282076	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:29:35:0.400:2	./.	./.	./.	./.	./.
chr3	15298549	rs138210635	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:32:95:0.474:2
chr3	15311325	rs1287467	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,100:30:101:1.00:2	0/1:56,47:31:103:0.456:2	0/1:0,87:30:87:1.00:2	0/1:0,72:30:72:1.00:2	0/1:1,85:30:86:0.988:2	0/1:0,59:31:59:1.00:2	0/1:43,30:30:73:0.411:2	0/1:1,69:28:70:0.986:2
chr3	15373858	rs115738660	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,11:28:13:0.846:2
chr3	15469383	rs41284029	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,36:31:112:0.321:2	./.	./.	./.	./.	./.
chr3	15476011	rs1563415	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,17:31:37:0.459:2	0/1:8,9:30:17:0.529:2	./.	./.	0/1:18,13:31:31:0.419:2	./.	./.	./.	0/1:31,19:31:50:0.380:2	./.	0/1:20,24:30:44:0.545:2
chr3	15478047	rs144767041	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,79:32:137:0.577:2	./.	./.	./.	./.	./.	./.	./.
chr3	15495386	rs55866379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	0/1:26,35:32:61:0.574:2	./.
chr3	15516481	rs924812	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,12:32:25:0.480:2	0/1:5,15:32:20:0.750:2	./.	0/1:28,13:33:41:0.317:2	./.	0/1:31,20:32:51:0.392:2	0/1:0,25:33:25:1.00:2	0/1:20,12:32:32:0.375:2	0/1:18,22:33:40:0.550:2	0/1:18,13:31:31:0.419:2	./.
chr3	15520838	rs750387	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.
chr3	15610070	rs905650	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:31:38:0.342:2	0/1:14,16:30:30:0.533:2	./.	0/1:23,26:30:49:0.531:2	./.	./.
chr3	15616531	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.
chr3	15628040	rs74637339	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,22:32:48:0.458:2	./.	./.	./.	./.	./.	./.
chr3	15643335	rs201756597	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:190:0.021:2	./.	./.	./.	./.
chr3	15686776	rs3817641	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,36:29:88:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr3	15727823	rs7630642	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,48:32:93:0.516:2	./.	./.	./.	./.	./.	./.	0/1:67,50:32:117:0.427:2
chr3	15737689	rs2470548	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,23:32:23:1.00:2	./.	0/1:49,23:31:72:0.319:2	./.	0/1:30,19:31:49:0.388:2	0/1:41,32:31:73:0.438:2	0/1:1,48:32:49:0.980:2	0/1:37,30:33:67:0.448:2	0/1:34,25:32:59:0.424:2	0/1:43,34:32:77:0.442:2
chr3	15737698	rs2470549	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,25:32:25:1.00:2	0/1:9,3:33:12:0.250:2	0/1:46,23:33:69:0.333:2	./.	0/1:32,20:32:52:0.385:2	0/1:39,32:31:71:0.451:2	0/1:2,42:32:44:0.955:2	0/1:36,31:33:67:0.463:2	0/1:33,26:33:59:0.441:2	0/1:40,32:33:72:0.444:2
chr3	15753641	rs2455834	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,24:27:24:1.00:2	./.	0/1:10,26:29:36:0.722:2	./.	0/1:14,13:30:27:0.481:2	0/1:15,26:29:41:0.634:2	0/1:1,42:28:43:0.977:2	0/1:39,22:30:61:0.361:2	0/1:23,26:29:49:0.531:2	0/1:37,17:28:54:0.315:2
chr3	15776909	rs202016048	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.
chr3	15807793	rs138689821	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,16:32:50:0.320:2	./.	./.	./.	./.
chr3	16217131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.
chr3	16242193	rs143956414	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,75:31:151:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr3	16254172	rs17851238	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,42:28:99:0.424:2	./.	./.	./.	./.	./.	0/1:50,38:32:89:0.432:2
chr3	16261420	rs2271077	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:33:78:0.513:2	./.	./.
chr3	16268944	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2
chr3	16268974	rs15767	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,18:31:38:0.474:2	0/1:19,18:32:37:0.486:2	./.	0/1:30,35:31:65:0.538:2	0/1:39,33:31:72:0.458:2	0/1:0,52:31:52:1.00:2	0/1:22,18:32:40:0.450:2	0/1:30,34:31:64:0.531:2	./.	0/1:30,26:31:56:0.464:2	0/1:31,50:31:81:0.617:2
chr3	16268986	rs14576	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,17:31:36:0.472:2	0/1:18,17:32:35:0.486:2	./.	0/1:27,36:30:63:0.571:2	./.	0/1:0,50:30:50:1.00:2	0/1:20,19:31:39:0.487:2	0/1:30,37:30:67:0.552:2	./.	0/1:24,29:31:53:0.547:2	0/1:28,47:31:75:0.627:2
chr3	16305674	rs14080	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,49:33:94:0.521:2	0/1:25,17:33:42:0.405:2	0/1:9,9:32:18:0.500:2	./.	./.	0/1:70,38:32:108:0.352:2	0/1:3,66:33:69:0.957:2	0/1:56,37:33:93:0.398:2	0/1:0,101:33:102:1.00:2	0/1:57,36:32:93:0.387:2	0/1:67,33:33:100:0.330:2
chr3	16312564	rs842259	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,47:32:91:0.516:2	0/1:16,23:32:39:0.590:2	0/1:10,3:31:13:0.231:2	./.	./.	0/1:57,59:31:116:0.509:2	0/1:5,96:32:101:0.950:2	0/1:56,44:31:100:0.440:2	0/1:1,129:32:130:0.992:2	0/1:69,57:32:126:0.452:2	0/1:77,52:31:129:0.403:2
chr3	16327855	rs842274	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:91,59:32:150:0.393:2	0/1:51,32:32:83:0.386:2	0/1:6,13:32:19:0.684:2	./.	./.	0/1:91,102:32:193:0.528:2	0/1:3,188:32:191:0.984:2	0/1:106,85:31:192:0.445:2	0/1:2,189:33:191:0.990:2	0/1:76,80:32:156:0.513:2	0/1:96,90:31:187:0.484:2
chr3	16327909	rs6777976	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:74,116:33:190:0.611:2	0/1:49,56:32:105:0.533:2	0/1:14,13:33:27:0.481:2	./.	./.	./.	./.	./.	./.	0/1:73,74:33:147:0.503:2	0/1:97,97:33:194:0.500:2
chr3	16358584	rs690241	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,33:31:74:0.446:2	0/1:18,6:29:24:0.250:2	0/1:9,7:32:16:0.438:2	0/1:1,67:30:68:0.985:2	0/1:0,61:29:61:1.00:2	0/1:47,36:30:83:0.434:2	./.	0/1:41,54:29:95:0.568:2	./.	0/1:45,27:30:72:0.375:2	0/1:48,37:30:85:0.435:2
chr3	16364919	rs690216	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,26:30:57:0.456:2	0/1:30,20:29:50:0.400:2	./.	0/1:1,78:29:79:0.987:2	0/1:0,61:29:61:1.00:2	0/1:51,42:29:93:0.452:2	./.	0/1:58,41:29:99:0.414:2	./.	0/1:45,25:29:70:0.357:2	0/1:59,47:29:106:0.443:2
chr3	16364954	rs11554130	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:29:38:0.474:2	0/1:23,15:31:38:0.395:2	./.	./.	./.	./.	./.	./.	./.	0/1:43,13:28:56:0.232:2	0/1:44,40:29:84:0.476:2
chr3	16450898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.
chr3	16633630	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,5:31:167:0.030:2	0/1:180,5:32:185:0.027:2	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2
chr3	16636857	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.
chr3	16640075	rs11710967	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:26:5:1.00:2	./.	0/1:0,5:33:5:1.00:2
chr3	16646745	rs9847342	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,63:30:110:0.573:2	0/1:33,30:30:63:0.476:2	0/1:1,12:30:13:0.923:2	0/1:0,116:31:116:1.00:2	0/1:0,99:29:99:1.00:2	0/1:1,118:29:119:0.992:2	0/1:72,49:29:121:0.405:2	0/1:0,104:30:104:1.00:2	0/1:1,74:30:75:0.987:2	0/1:64,42:31:106:0.396:2	0/1:0,71:31:71:1.00:2
chr3	17051328	rs7653834	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,39:33:96:0.406:2	./.	0/1:59,36:32:95:0.379:2	0/1:33,45:32:79:0.577:2	./.	0/1:46,48:34:94:0.511:2	0/1:39,33:33:72:0.458:2	./.
chr3	17052268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr3	17052702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.
chr3	17053499	rs4602367	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,36:30:74:0.486:2	0/1:28,18:31:46:0.391:2	./.	0/1:32,28:32:60:0.467:2	0/1:35,25:31:60:0.417:2	0/1:49,21:33:70:0.300:2	0/1:35,43:32:78:0.551:2	./.	0/1:0,78:32:78:1.00:2	0/1:57,29:31:86:0.337:2	./.
chr3	17053613	rs61751588	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:32:35:0.343:2	0/1:10,7:33:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	17208267	rs1138454	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,41:31:75:0.547:2	0/1:32,19:30:51:0.373:2	0/1:4,7:31:11:0.636:2	./.	0/1:45,32:28:77:0.416:2	./.	./.	./.	0/1:0,98:30:98:1.00:2	./.	0/1:67,45:30:112:0.402:2
chr3	17275173	rs2060628	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,17:33:26:0.654:2	0/1:3,168:33:171:0.982:2	./.	0/1:87,88:32:175:0.503:2	./.	./.	0/1:113,84:34:197:0.426:2	0/1:0,121:33:121:1.00:2	0/1:1,181:32:183:0.995:2
chr3	17446447	rs34457748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,33:32:89:0.375:2
chr3	18427924	rs2229261	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,48:30:88:0.545:2	0/1:29,38:31:67:0.567:2	0/1:9,3:30:12:0.250:2	0/1:0,128:30:128:1.00:2	0/1:61,52:30:113:0.460:2	0/1:69,49:29:118:0.415:2	./.	./.	0/1:2,92:31:94:0.979:2	0/1:3,97:30:100:0.970:2	0/1:62,40:31:102:0.392:2
chr3	19190241	rs34370450	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,32:31:73:0.438:2	0/1:25,21:32:46:0.457:2	./.	./.	0/1:30,24:31:54:0.444:2	./.	0/1:30,24:33:54:0.444:2	./.	./.	./.	./.
chr3	19556822	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.
chr3	19574945	rs33915638	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,45:29:109:0.413:2	0/1:63,37:29:100:0.370:2	./.	./.	./.	0/1:70,69:29:140:0.496:2
chr3	19575232	rs34561654	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,24:30:72:0.333:2	./.	./.	./.	./.	./.	./.
chr3	19575562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.	./.	./.	./.
chr3	19924058	rs76398910	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:32:28:0.286:2	./.	0/1:20,18:33:38:0.474:2	./.	./.
chr3	19930003	rs4858714	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	0/1:19,7:31:26:0.269:2	./.	0/1:38,11:33:49:0.224:2	0/1:28,13:32:41:0.317:2	0/1:47,34:32:81:0.420:2
chr3	19930130	rs76305623	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,33:32:89:0.371:2	./.	0/1:66,49:33:116:0.426:2	./.	./.
chr3	19947126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.
chr3	19959756	rs2929366	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,84:31:87:0.966:2	0/1:1,46:30:47:0.979:2	./.	./.	0/1:0,72:30:72:1.00:2	0/1:59,66:30:125:0.528:2	0/1:0,114:31:114:1.00:2	./.	0/1:0,145:31:145:1.00:2	0/1:62,34:31:96:0.354:2	0/1:0,144:31:144:1.00:2
chr3	19961330	rs2931403	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,85:31:85:1.00:2	0/1:0,44:32:44:1.00:2	./.	./.	0/1:0,67:31:67:1.00:2	0/1:61,46:31:107:0.430:2	0/1:1,62:31:63:0.984:2	0/1:57,24:31:81:0.296:2	0/1:1,99:32:100:0.990:2	0/1:0,77:32:77:1.00:2	0/1:0,128:32:128:1.00:2
chr3	19961331	rs2929362	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,46:31:85:0.541:2	0/1:26,21:31:47:0.447:2	./.	./.	./.	./.	0/1:44,27:30:71:0.380:2	./.	0/1:52,50:31:102:0.490:2	./.	./.
chr3	19962044	rs13078867	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,11:32:31:0.355:2	0/1:14,14:33:28:0.500:2	./.	./.	0/1:17,5:26:22:0.227:2	./.	./.	./.	./.	./.	0/1:21,34:32:55:0.618:2
chr3	19975139	rs17180771	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,61:31:122:0.504:2	./.	0/1:103,77:31:180:0.428:2	./.	0/1:102,97:32:199:0.487:2	0/1:71,76:32:147:0.517:2	0/1:92,101:31:193:0.523:2
chr3	19975215	rs17795400	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,86:30:188:0.460:2	0/1:85,76:30:161:0.472:2	./.	./.	0/1:94,67:29:161:0.416:2	./.	./.	./.	./.	./.	0/1:95,87:31:182:0.478:2
chr3	19992432	rs6773437	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,26:32:26:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,22:34:22:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,38:33:38:1.00:2
chr3	19992477	rs148447810	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,3:34:31:0.097:2	./.	./.	./.	./.	./.	./.	./.
chr3	19992521	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:33:33:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr3	20113830	rs3021408	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,25:32:56:0.446:2	0/1:11,16:33:27:0.593:2	0/1:0,3:31:3:1.00:2	0/1:28,18:33:46:0.391:2	0/1:23,16:31:39:0.410:2	0/1:32,27:32:59:0.458:2	./.	0/1:0,41:32:41:1.00:2	0/1:38,18:33:56:0.321:2	0/1:28,22:32:50:0.440:2	0/1:45,38:31:83:0.458:2
chr3	20141356	rs35424474	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	0/1:19,4:30:23:0.174:2	./.	0/1:3,10:31:13:0.769:2	./.	./.	0/1:18,11:32:29:0.379:2
chr3	20142851	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr3	20212621	rs75326306	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,48:32:107:0.449:2	./.	./.	./.	./.	./.
chr3	20216454	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.
chr3	20216519	rs61729306	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,46:32:109:0.422:2	0/1:33,26:32:59:0.441:2	./.	./.	0/1:49,30:32:79:0.380:2	./.	./.	./.	0/1:58,36:33:95:0.383:2	./.	./.
chr3	21462754	rs451242	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:28:19:1.00:2	0/1:0,16:27:16:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,54:28:54:1.00:2	0/1:31,20:28:51:0.392:2	0/1:0,30:29:30:1.00:2	0/1:0,27:29:27:1.00:2	0/1:19,33:28:52:0.635:2
chr3	21462787	rs427233	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,15:32:27:0.556:2	0/1:11,11:32:22:0.500:2	0/1:0,4:30:4:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,75:32:75:1.00:2	0/1:36,22:32:58:0.379:2	0/1:0,40:33:40:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,52:32:52:1.00:2
chr3	21462880	rs4455340	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:32:25:0.480:2	0/1:0,19:31:19:1.00:2	./.	0/1:14,11:29:25:0.440:2	0/1:20,5:32:25:0.200:2	0/1:7,13:32:20:0.650:2	0/1:10,16:32:26:0.615:2	./.
chr3	21706469	rs114302168	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,47:31:101:0.465:2	./.	./.	./.	./.	./.
chr3	23250218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr3	23929073	rs115996277	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	23959425	rs35629664	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.
chr3	23997547	rs61732086	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,93:33:196:0.474:2	./.
chr3	24006477	rs4858097	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,89:32:89:1.00:2
chr3	24164510	rs13081063	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,65:33:144:0.451:2	./.	./.
chr3	24184995	rs3752874	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:74,66:32:140:0.471:2	0/1:48,23:31:71:0.324:2	./.	0/1:98,74:31:172:0.430:2	./.	0/1:76,48:31:124:0.387:2	./.	./.	0/1:81,71:32:152:0.467:2	0/1:52,57:31:109:0.523:2	./.
chr3	25611354	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,3:34:62:0.048:2	./.	./.	./.	./.
chr3	25639828	rs61739570	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	25675362	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:29:72:0.056:2	./.	./.	./.	./.	./.
chr3	25679738	rs60422476	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:61,49:33:110:0.445:2	0/1:43,22:32:65:0.338:2	./.	./.	0/1:49,27:32:76:0.355:2	0/1:65,64:31:129:0.496:2	./.	./.	./.	0/1:55,37:32:92:0.402:2	0/1:82,62:32:144:0.431:2
chr3	25761570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:34:132:0.030:2	./.	./.
chr3	25777564	rs202119444	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:73,6:25:79:0.076:2	./.	./.	0/1:116,8:19:124:0.065:2	./.	0/1:97,14:18:111:0.126:2	./.	0/1:103,12:20:115:0.104:2	0/1:114,10:22:124:0.081:2	0/1:91,14:18:105:0.133:2	0/1:97,9:23:106:0.085:2
chr3	25805649	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:34:169:0.024:2	./.	./.	./.	./.
chr3	25833051	rs139719761	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,36:32:115:0.313:2
chr3	26751260	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,10:32:141:0.071:2
chr3	26751493	rs35497952	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,29:31:66:0.439:2	./.	./.	./.	./.	0/1:32,31:31:63:0.492:2	./.	./.
chr3	26752005	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:33:44:0.500:2	./.
chr3	26752097	rs188194787	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,12:31:28:0.429:2	./.	./.	./.	./.	./.	./.
chr3	27204052	rs17854381	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:10:0.333:2	./.	./.	./.	0/1:41,48:31:89:0.539:2	0/1:71,38:30:109:0.349:2	0/1:44,59:31:103:0.573:2	0/1:0,61:31:61:1.00:2	./.
chr3	27233566	rs35493524	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,89:31:193:0.461:2	0/1:78,76:31:154:0.494:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	27243045	rs17680166	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	0/1:56,57:33:113:0.504:2	0/1:86,60:33:146:0.411:2	0/1:91,67:33:158:0.424:2	0/1:3,121:32:125:0.976:2	./.
chr3	27244045	rs9823271	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,14:33:36:0.389:2	0/1:8,11:33:19:0.579:2	./.	./.	./.	./.	0/1:22,33:33:55:0.600:2	./.	./.	./.	./.
chr3	27257351	rs187971651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:26:10:0.333:2	./.
chr3	27297816	rs3213930	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:30:55:1.00:2	0/1:2,21:30:23:0.913:2	0/1:0,9:30:9:1.00:2	0/1:0,45:30:45:1.00:2	0/1:27,16:29:43:0.372:2	./.	0/1:1,49:29:50:0.980:2	0/1:28,28:29:56:0.500:2	0/1:0,84:30:84:1.00:2	0/1:0,75:29:75:1.00:2	0/1:40,41:30:81:0.506:2
chr3	27326097	rs11129280	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	0/1:16,12:32:28:0.429:2	0/1:31,21:32:52:0.404:2	0/1:32,28:34:60:0.467:2	0/1:0,32:32:32:1.00:2	./.
chr3	27326451	rs10510594	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:30:19:0.474:2	0/1:11,3:30:14:0.214:2	./.	0/1:0,11:30:11:1.00:2	./.
chr3	27332177	rs674303	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,67:33:68:0.985:2	0/1:0,33:32:33:1.00:2	0/1:6,5:32:11:0.455:2	0/1:0,71:32:71:1.00:2	0/1:34,25:32:59:0.424:2	./.	0/1:17,19:32:36:0.528:2	./.	0/1:51,39:33:90:0.433:2	./.	0/1:51,40:33:91:0.440:2
chr3	27332820	rs10510592	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:30:26:0.462:2	./.	./.	./.	0/1:49,35:30:84:0.417:2	0/1:67,68:30:135:0.504:2	0/1:88,72:31:160:0.450:2	0/1:0,132:31:132:1.00:2	./.
chr3	27387641	rs55958314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,35:33:65:0.538:2	./.	./.
chr3	27424718	rs1472256	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:30:60:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,93:29:93:1.00:2
chr3	27442336	rs3736312	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,30:32:71:0.423:2	0/1:27,14:31:41:0.341:2	0/1:11,4:30:15:0.267:2	0/1:57,31:30:88:0.352:2	0/1:32,23:31:55:0.418:2	0/1:35,30:31:66:0.462:2	./.	./.	./.	./.	0/1:59,40:32:100:0.404:2
chr3	27463229	rs79251239	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	./.	./.	0/1:37,31:32:68:0.456:2	./.	./.	0/1:48,27:32:75:0.360:2
chr3	27472936	rs3755652	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,116:32:117:0.991:2	0/1:0,74:32:74:1.00:2	0/1:7,7:31:14:0.500:2	0/1:57,60:31:117:0.513:2	0/1:55,38:31:93:0.409:2	0/1:80,70:31:150:0.467:2	./.	./.	./.	./.	0/1:81,72:30:153:0.471:2
chr3	27473066	rs13077400	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,32:30:32:1.00:2	0/1:5,10:32:15:0.667:2	0/1:36,34:31:70:0.486:2	0/1:19,24:29:43:0.558:2	0/1:25,29:30:54:0.537:2	./.	./.	./.	./.	0/1:44,34:31:78:0.436:2
chr3	27475540	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.
chr3	27478899	rs2029618	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:29:48:0.458:2	0/1:29,20:29:49:0.408:2	0/1:2,46:30:48:0.958:2	0/1:30,29:30:59:0.492:2	./.
chr3	27478968	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	27490194	rs13096477	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,80:32:161:0.497:2	0/1:44,45:32:89:0.506:2	0/1:12,9:34:21:0.429:2	0/1:121,66:33:187:0.353:2	0/1:50,34:33:84:0.405:2	0/1:81,82:32:163:0.503:2	./.	./.	./.	./.	0/1:96,77:32:173:0.445:2
chr3	27763350	rs200215171	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:33:13:0.615:2	./.	./.	./.	./.	./.	./.	./.
chr3	28283294	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2
chr3	28304845	rs368316365	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:32:195:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr3	28304854	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr3	28365590	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:34:143:0.028:2	./.	./.
chr3	28365733	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2
chr3	28520373	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,7:33:120:0.058:2	./.
chr3	28520417	rs1563656	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,58:33:106:0.547:2	0/1:38,45:32:83:0.542:2	0/1:9,9:31:18:0.500:2	./.	0/1:42,25:31:67:0.373:2	./.	0/1:0,74:32:74:1.00:2	./.	0/1:0,123:33:123:1.00:2	./.	0/1:0,160:32:160:1.00:2
chr3	28533658	rs13100556	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:82,44:32:126:0.349:2	0/1:44,24:32:68:0.353:2	./.	./.	./.	./.	0/1:53,43:32:96:0.448:2	./.	0/1:1,109:32:110:0.991:2	./.	./.
chr3	29530008	rs3773022	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,21:32:32:0.656:2	0/1:18,5:32:23:0.217:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	29804487	rs1371839	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,38:32:61:0.623:2	0/1:15,16:31:31:0.516:2	0/1:0,4:29:4:1.00:2	0/1:33,28:30:61:0.459:2	0/1:0,39:30:39:1.00:2	0/1:22,20:28:42:0.476:2	0/1:19,16:31:35:0.457:2	0/1:17,27:30:44:0.614:2	0/1:41,35:32:76:0.461:2	0/1:19,17:31:36:0.472:2	./.
chr3	30029724	rs1868491	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,23:31:47:0.489:2	./.	./.	./.	./.	0/1:23,13:33:36:0.361:2	./.	./.
chr3	30032626	rs114278295	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,69:30:158:0.437:2	./.
chr3	30713795	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chr3	30819751	rs143542109	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:30:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	30827904	rs6550024	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,50:31:88:0.568:2	./.	./.	./.	./.	./.
chr3	31659458	rs199778452	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,30:15:142:0.213:2	0/1:78,15:12:94:0.161:2	./.	0/1:124,46:11:170:0.271:2	0/1:103,25:13:128:0.195:2	0/1:114,56:13:171:0.329:2	0/1:96,28:15:124:0.226:2	0/1:125,41:12:167:0.247:2	0/1:139,29:12:168:0.173:2	0/1:96,15:17:111:0.135:2	0/1:109,38:16:147:0.259:2
chr3	31659462	rs74346226	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:77,12:13:89:0.135:2	./.	0/1:156,14:14:171:0.082:2	./.	0/1:159,25:14:185:0.136:2	./.	./.	./.	0/1:113,18:11:131:0.137:2	./.
chr3	31665283	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.
chr3	31710165	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.
chr3	31712393	rs3749405	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,67:32:69:0.971:2	0/1:0,54:32:54:1.00:2	./.	./.	0/1:62,49:30:111:0.441:2	0/1:81,61:31:142:0.430:2	0/1:65,71:31:136:0.522:2	./.	./.	./.	./.
chr3	31725316	rs2278959	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,76:32:77:0.987:2	0/1:0,57:32:57:1.00:2	./.	0/1:68,44:31:112:0.393:2	0/1:54,42:32:96:0.438:2	0/1:66,41:31:107:0.383:2	0/1:70,48:31:118:0.407:2	./.	./.	./.	0/1:65,33:32:98:0.337:2
chr3	31789442	rs141263490	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,47:29:98:0.480:2	./.	./.	./.
chr3	31789582	rs2290532	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,41:31:41:1.00:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:37,39:31:76:0.513:2	./.	0/1:49,42:30:91:0.462:2	./.	0/1:30,30:33:60:0.500:2	0/1:28,26:31:54:0.481:2	./.
chr3	32030859	rs186046779	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,26:30:80:0.325:2	./.	./.	./.	./.	./.	./.	./.
chr3	32030998	rs4639011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,84:32:166:0.506:2	./.	./.
chr3	32031024	rs4449357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:32:108:0.056:2	./.	0/1:71,71:31:142:0.500:2	./.	0/1:66,84:31:150:0.560:2
chr3	32031053	rs140232911	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:33:140:0.036:2	./.	./.
chr3	32031135	rs6419811	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,57:31:138:0.416:2	./.	0/1:71,64:31:135:0.474:2
chr3	32031246	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.	./.	./.
chr3	32031315	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.
chr3	32031615	rs13064905	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,46:31:165:0.279:2	./.	0/1:116,39:32:155:0.252:2
chr3	32031622	rs13087612	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,46:33:169:0.272:2	./.	0/1:120,40:33:160:0.250:2
chr3	32031643	rs13065048	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,52:29:172:0.302:2	./.	0/1:117,47:28:165:0.287:2
chr3	32031765	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr3	32031784	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	./.	./.	./.	./.
chr3	32031792	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr3	32031962	rs1808125	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,6:29:80:0.075:2	0/1:36,4:30:40:0.100:2	0/1:36,53:28:89:0.596:2	./.	./.	0/1:35,43:30:78:0.551:2	0/1:42,43:29:85:0.506:2	0/1:33,23:30:56:0.411:2
chr3	32032001	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:32:48:0.063:2	./.	./.	./.	./.
chr3	32032029	rs4458400	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	0/1:64,4:32:68:0.059:2
chr3	32032113	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.
chr3	32032397	rs4955216	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:33:95:0.421:2	./.	0/1:74,56:33:130:0.431:2
chr3	32032717	rs150561647	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,44:30:90:0.489:2	0/1:35,35:32:70:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	32032743	rs13094125	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,4:34:149:0.027:2	./.	./.	./.	./.	0/1:75,72:34:147:0.490:2	./.	0/1:85,49:32:134:0.366:2
chr3	32180203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.
chr3	32200460	rs185158781	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:31:72:0.417:2	./.	./.	./.	./.
chr3	32200537	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,3:36:103:0.029:2	./.	./.	./.
chr3	32578522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chr3	32586521	rs138677120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,30:32:85:0.353:2	./.	./.
chr3	32769189	rs11558687	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	32927509	rs6774703	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,84:32:84:1.00:2
chr3	32933036	rs13096271	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:31:52:0.431:2	./.	./.	0/1:21,29:33:50:0.580:2	./.	./.
chr3	32995928	rs2228428	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,50:32:51:0.980:2	0/1:0,27:32:27:1.00:2	./.	./.	./.	./.	0/1:37,32:31:69:0.464:2	0/1:41,29:31:70:0.414:2	./.	0/1:0,53:31:53:1.00:2	0/1:1,76:31:77:0.987:2
chr3	32996509	rs6770096	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:31:41:0.341:2	./.	./.
chr3	33055688	rs73826339	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,59:28:130:0.454:2	0/1:32,30:30:62:0.484:2	./.	0/1:78,86:28:164:0.524:2	./.	./.	./.	0/1:101,53:27:154:0.344:2	./.	./.	./.
chr3	33055721	rs4302331	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:29:102:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,125:29:125:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,93:30:93:1.00:2
chr3	33094973	rs79518579	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,48:31:118:0.407:2	./.	./.	./.	./.	./.
chr3	33099717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,6:33:114:0.053:2	./.	./.
chr3	33110383	rs35289681	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:32:64:0.516:2	./.
chr3	33138544	rs7614776	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,73:33:73:1.00:2	0/1:1,75:34:76:0.987:2	0/1:0,62:33:62:1.00:2	0/1:0,64:33:64:1.00:2
chr3	33138549	rs7637099	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:0,92:32:92:1.00:2	./.	./.	0/1:25,28:32:53:0.528:2	0/1:0,74:31:74:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,62:32:62:1.00:2	0/1:32,27:31:59:0.458:2
chr3	33161898	rs4076086	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,17:32:25:0.680:2	./.	./.	0/1:27,34:31:61:0.557:2	0/1:34,29:31:63:0.460:2	./.	./.	./.	./.
chr3	33165919	rs146124454	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,49:30:104:0.471:2	./.	./.	./.	./.	./.
chr3	33174156	rs1135127	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,26:30:86:0.302:2	0/1:34,31:30:65:0.477:2	./.	0/1:65,40:30:105:0.381:2	./.	./.	./.	0/1:90,45:30:135:0.333:2	0/1:0,96:30:96:1.00:2	0/1:51,34:29:85:0.400:2	0/1:69,43:30:112:0.384:2
chr3	33174168	rs1135128	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:56,21:33:77:0.273:2	0/1:30,29:33:59:0.492:2	./.	0/1:58,39:33:97:0.402:2	./.	./.	./.	0/1:85,40:32:125:0.320:2	0/1:0,95:34:95:1.00:2	0/1:43,32:32:75:0.427:2	0/1:66,39:33:105:0.371:2
chr3	33194518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.
chr3	33194990	rs6810039	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,80:32:162:0.494:2	0/1:60,39:32:99:0.394:2	0/1:16,5:31:21:0.238:2	0/1:99,97:32:196:0.495:2	./.	0/1:102,91:31:193:0.472:2	0/1:5,186:32:191:0.974:2	0/1:95,96:32:191:0.503:2	./.	./.	./.
chr3	33195284	rs61743511	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,10:32:36:0.278:2	0/1:9,6:32:15:0.400:2	./.	./.	./.	0/1:20,27:30:47:0.574:2	0/1:18,6:31:24:0.250:2	0/1:21,14:31:35:0.400:2	./.	./.	./.
chr3	33195309	rs61743461	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:31:39:0.513:2	0/1:8,6:29:14:0.429:2	./.	./.	./.	0/1:18,17:30:35:0.486:2	0/1:15,8:31:23:0.348:2	0/1:18,15:28:33:0.455:2	./.	./.	./.
chr3	33249370	rs61744674	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,57:29:154:0.370:2	./.
chr3	33255592	rs9637517	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,12:32:12:1.00:2	0/1:53,60:32:114:0.531:2	0/1:44,30:32:74:0.405:2	0/1:55,32:31:87:0.368:2	0/1:0,117:32:117:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,127:34:127:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,121:32:121:1.00:2
chr3	33318997	rs201905493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:27:25:0.360:2	./.	./.	./.
chr3	33319023	rs374563543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	33426992	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,4:31:178:0.022:2	./.	./.	./.	./.	./.	./.
chr3	33431826	rs41285089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,71:31:162:0.438:2	./.	./.	./.	./.	./.
chr3	33434128	rs62252101	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:2,32:31:34:0.941:2	0/1:0,14:31:14:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	./.
chr3	33434831	rs2293250	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,18:33:41:0.439:2	0/1:0,55:32:55:1.00:2	0/1:18,38:33:56:0.679:2	0/1:30,18:32:48:0.375:2	./.	0/1:16,10:34:26:0.385:2	0/1:44,27:33:71:0.380:2
chr3	33454280	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,9:26:190:0.047:2	./.	./.	./.	./.	./.	./.
chr3	33454282	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,9:25:189:0.048:2	./.	./.	./.	./.	./.	./.
chr3	33458266	rs3736563	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,25:32:42:0.595:2	./.	./.	0/1:1,193:32:194:0.995:2	0/1:103,62:33:165:0.376:2	0/1:118,79:32:197:0.401:2	./.	0/1:97,89:32:186:0.478:2	./.
chr3	33543195	rs111990025	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:33:43:0.581:2	./.	./.	./.	./.
chr3	33543196	rs200365117	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr3	33552155	rs61735757	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,74:31:179:0.413:2	./.	./.	./.	./.	./.
chr3	33725859	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr3	33728610	rs61738888	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,46:33:106:0.434:2	./.	./.	0/1:44,24:33:68:0.353:2	./.	0/1:72,33:33:105:0.314:2	./.	./.
chr3	33877626	rs3792594	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,10:31:29:0.345:2	0/1:59,74:30:133:0.556:2	0/1:60,55:30:115:0.478:2	./.	0/1:1,134:30:135:0.993:2	0/1:0,159:31:159:1.00:2	./.	./.	0/1:84,80:32:164:0.488:2
chr3	33879770	rs3203777	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,114:32:117:0.974:2	0/1:1,53:32:54:0.981:2	./.	0/1:49,57:31:106:0.538:2	./.	./.	./.	./.	0/1:77,62:32:139:0.446:2	0/1:0,94:32:94:1.00:2	./.
chr3	33887008	rs112754416	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,80:30:185:0.432:2	./.	0/1:103,79:31:182:0.434:2	./.	./.	./.	./.
chr3	33893987	rs9813017	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,45:32:130:0.346:2	./.	./.	0/1:61,37:32:98:0.378:2	0/1:61,42:32:103:0.408:2	./.	./.	./.
chr3	33894186	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr3	33895391	rs3183982	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:27:10:0.800:2	0/1:43,47:28:90:0.522:2	0/1:34,26:27:60:0.433:2	./.	0/1:3,49:28:52:0.942:2	0/1:0,67:28:67:1.00:2	./.	./.	0/1:64,78:29:142:0.549:2
chr3	33905566	rs1127732	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:29:22:0.409:2	./.	0/1:101,85:30:186:0.457:2	./.	0/1:94,86:30:180:0.478:2	0/1:100,82:30:182:0.451:2	./.	./.	0/1:92,89:30:181:0.492:2
chr3	33907915	rs61751641	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,34:32:80:0.425:2	./.	./.
chr3	33907945	rs3183987	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:29:12:0.417:2	0/1:44,29:29:74:0.397:2	0/1:25,23:29:48:0.479:2	./.	0/1:2,42:29:44:0.955:2	0/1:0,108:29:109:1.00:2	./.	./.	0/1:49,42:29:91:0.462:2
chr3	35725250	rs969818	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,69:32:70:0.986:2	0/1:1,61:31:62:0.984:2	0/1:2,7:30:9:0.778:2	./.	0/1:0,72:30:72:1.00:2	0/1:48,38:31:86:0.442:2	0/1:47,44:31:91:0.484:2	0/1:0,123:31:123:1.00:2	0/1:77,62:32:139:0.446:2	0/1:55,31:32:86:0.360:2	0/1:0,105:31:105:1.00:2
chr3	35778773	rs2278757	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,8:29:24:0.333:2	0/1:13,8:30:21:0.381:2	0/1:0,4:31:4:1.00:2	0/1:18,11:31:29:0.379:2	./.	0/1:16,9:32:25:0.360:2	0/1:17,11:32:28:0.393:2	0/1:21,15:30:36:0.417:2	0/1:19,5:31:24:0.208:2	0/1:14,6:30:21:0.300:2	0/1:12,7:32:19:0.368:2
chr3	36422135	rs112766131	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	0/1:0,5:28:5:1.00:2	./.	./.	./.
chr3	36422216	rs73052248	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,31:32:61:0.508:2	./.	./.	./.	0/1:15,19:31:34:0.559:2	./.	./.	0/1:14,13:30:27:0.481:2
chr3	36779707	rs3796187	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,12:30:16:0.750:2	0/1:38,45:30:83:0.542:2	./.	0/1:41,54:30:95:0.568:2	./.	0/1:3,92:31:95:0.968:2	./.	0/1:37,43:31:80:0.538:2	./.
chr3	36779992	rs55888784	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:31:77:0.442:2
chr3	36875116	rs186229206	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,24:31:58:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr3	36875292	rs202062734	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,63:32:153:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr3	36897568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr3	36897812	rs11712950	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	0/1:19,4:32:23:0.174:2	0/1:15,10:32:25:0.400:2	./.	0/1:10,8:33:18:0.444:2	0/1:12,5:32:17:0.294:2	0/1:0,31:32:31:1.00:2
chr3	36898036	rs62245253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,73:32:170:0.429:2	./.	./.	./.
chr3	36898973	rs17201603	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:33:54:0.426:2	./.	./.	./.	./.
chr3	36898991	rs61732326	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,35:30:63:0.556:2	./.	./.	./.	0/1:44,28:30:72:0.389:2
chr3	37033462	rs4647200	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:31:34:0.441:2	./.	./.	./.
chr3	37034356	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:27:11:0.364:2	./.
chr3	37034446	rs34566456	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2
chr3	37053568	rs1799977	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,26:29:51:0.510:2	0/1:32,24:30:56:0.429:2	./.	0/1:37,45:30:82:0.549:2	0/1:46,33:31:79:0.418:2	0/1:67,34:29:101:0.337:2	0/1:54,50:30:104:0.481:2	0/1:55,53:30:108:0.491:2	0/1:65,54:32:119:0.454:2	0/1:43,36:30:79:0.456:2	./.
chr3	37083740	rs9876116	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,79:30:80:0.988:2	0/1:0,33:30:33:1.00:2	./.	0/1:64,51:29:115:0.443:2	0/1:0,46:30:46:1.00:2	0/1:63,37:30:100:0.370:2	0/1:58,34:30:92:0.370:2	0/1:72,32:29:105:0.308:2	0/1:64,45:31:109:0.413:2	0/1:61,31:30:92:0.337:2	./.
chr3	37089130	rs35001569	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,46:32:120:0.383:2	./.	./.	./.	./.	./.
chr3	37089131	rs63749986	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,46:28:121:0.380:2	./.	./.	./.	./.	./.
chr3	37092019	rs35831931	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:31:57:0.439:2	0/1:21,13:32:34:0.382:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	37163039	rs336595	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,68:31:68:1.00:2
chr3	37366459	rs11718848	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,129:33:130:0.992:2	0/1:2,71:32:73:0.973:2	./.	./.	0/1:3,89:31:92:0.967:2	./.	0/1:112,55:32:167:0.329:2	0/1:110,79:32:189:0.418:2	0/1:117,78:33:195:0.400:2	./.	./.
chr3	37367890	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr3	37368755	rs62241896	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,51:31:51:1.00:2	0/1:0,26:33:26:1.00:2	./.	./.	0/1:1,47:32:48:0.979:2	./.	0/1:15,20:33:35:0.571:2	0/1:22,23:32:45:0.511:2	0/1:43,22:33:65:0.338:2	./.	./.
chr3	37379234	rs140703855	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,64:33:135:0.474:2	0/1:29,36:32:65:0.554:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	37459181	rs115735701	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,13:33:30:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr3	37459523	rs193051820	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	37523079	rs17227748	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,78:31:155:0.503:2	./.	0/1:87,78:31:165:0.473:2	./.	0/1:62,62:31:124:0.500:2	./.	./.
chr3	37535984	rs2507940	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:56,45:32:103:0.446:2	0/1:25,26:32:51:0.510:2	./.	./.	0/1:52,42:32:94:0.447:2	0/1:62,49:32:111:0.441:2	0/1:37,45:32:82:0.549:2	0/1:0,108:32:108:1.00:2	0/1:60,48:32:108:0.444:2	0/1:41,53:33:96:0.564:2	0/1:0,119:33:119:1.00:2
chr3	37536056	rs2507941	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,88:33:191:0.461:2
chr3	37560842	rs61751646	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,78:31:186:0.419:2	./.	./.
chr3	37574951	rs267561	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,16:32:43:0.372:2	0/1:12,16:32:28:0.571:2	./.	./.	0/1:53,41:31:94:0.436:2	0/1:44,24:31:68:0.353:2	0/1:59,41:31:100:0.410:2	0/1:0,56:30:56:1.00:2	0/1:46,38:32:84:0.452:2	0/1:41,12:30:53:0.226:2	0/1:0,50:32:50:1.00:2
chr3	37695192	rs3821909	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,54:30:121:0.446:2	./.	./.	./.	./.	0/1:98,49:30:147:0.333:2	./.	0/1:73,41:31:115:0.360:2
chr3	37695260	rs57547208	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,50:29:91:0.549:2	0/1:23,24:30:47:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	37778481	rs1118148	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:4,22:28:26:0.846:2	./.	0/1:0,39:28:39:1.00:2	./.	./.	./.	./.	0/1:25,17:28:42:0.405:2	./.	0/1:31,18:28:49:0.367:2
chr3	38038982	rs6809649	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	0/1:72,50:32:122:0.410:2	0/1:36,50:33:86:0.581:2	./.	./.
chr3	38043904	rs9843296	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:31:53:0.491:2	0/1:35,22:31:57:0.386:2	./.	./.
chr3	38047680	rs11707277	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	0/1:35,32:31:67:0.478:2	0/1:38,20:33:58:0.345:2	./.	./.
chr3	38047954	rs9816693	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	0/1:41,22:32:63:0.349:2	0/1:38,30:33:68:0.441:2	./.	./.
chr3	38051941	rs9857730	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:72,41:30:113:0.363:2	0/1:33,27:29:60:0.450:2	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	0/1:5,148:30:153:0.967:2	0/1:80,79:31:159:0.497:2	./.	./.
chr3	38052804	rs61755441	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,23:31:50:0.460:2	0/1:18,20:31:38:0.526:2	./.	./.	./.	./.	./.	0/1:44,25:30:69:0.362:2	./.	./.	./.
chr3	38058044	rs72863996	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38058058	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,41:30:97:0.423:2	./.	./.
chr3	38061748	rs61751648	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	0/1:36,30:33:66:0.455:2	./.	./.	./.
chr3	38080952	rs7625806	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:23,13:28:36:0.361:2	./.	0/1:17,5:27:22:0.227:2	0/1:12,14:28:26:0.538:2	0/1:2,17:28:19:0.895:2	0/1:19,13:29:32:0.406:2	./.
chr3	38081031	rs7616776	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:31:10:1.00:2	./.	0/1:68,44:32:112:0.393:2	./.	./.	./.	0/1:1,61:33:62:0.984:2	0/1:31,34:33:65:0.523:2	./.
chr3	38087123	rs7630340	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,45:29:86:0.523:2	0/1:30,29:28:59:0.492:2	./.	./.	./.	./.	0/1:39,31:29:70:0.443:2	0/1:50,31:28:82:0.383:2	./.	./.	./.
chr3	38125705	rs7652276	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:54,34:30:88:0.386:2	./.	./.	./.	0/1:0,79:30:79:1.00:2	0/1:39,30:31:69:0.435:2	./.
chr3	38136401	rs34503588	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:28:63:0.540:2	0/1:19,14:29:33:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38139089	rs17731258	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,63:28:136:0.463:2	./.	./.	./.
chr3	38139120	rs202125600	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38151731	rs12630114	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,15:33:25:0.600:2	0/1:13,7:31:20:0.350:2	0/1:0,5:33:5:1.00:2	./.	0/1:20,17:32:37:0.459:2	./.	0/1:16,11:28:27:0.407:2	0/1:15,30:31:45:0.667:2	0/1:0,30:32:30:1.00:2	0/1:13,22:31:36:0.629:2	./.
chr3	38157998	rs200307012	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,9:17:51:0.176:2
chr3	38170810	rs156265	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,83:32:185:0.451:2	./.	./.	./.	0/1:106,91:33:197:0.462:2	./.	./.
chr3	38170844	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:34:146:0.027:2	./.	./.
chr3	38173098	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.
chr3	38173469	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr3	38182253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:30:124:0.032:2	./.
chr3	38182641	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:29:65:0.092:2
chr3	38271881	rs6599079	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,27:32:75:0.360:2	0/1:20,15:32:35:0.429:2	./.	./.	./.	./.	0/1:20,20:30:40:0.500:2	0/1:45,27:31:72:0.375:2	./.	./.	./.
chr3	38307510	rs9842091	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:73,95:33:168:0.565:2	0/1:67,67:32:134:0.500:2	0/1:23,17:33:40:0.425:2	./.	./.	./.	0/1:97,95:33:192:0.495:2	./.	./.	./.	./.
chr3	38307615	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,15:12:94:0.161:2	./.	./.
chr3	38348027	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.	./.	./.
chr3	38349171	rs148000898	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,71:33:157:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr3	38350479	rs818819	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,128:30:129:0.992:2	0/1:0,66:30:66:1.00:2	0/1:19,6:30:25:0.240:2	0/1:0,168:30:168:1.00:2	0/1:3,137:30:140:0.979:2	0/1:0,159:30:159:1.00:2	0/1:120,75:31:195:0.385:2	0/1:1,162:30:163:0.994:2	0/1:113,76:31:189:0.402:2	0/1:0,127:30:127:1.00:2	0/1:0,129:29:129:1.00:2
chr3	38350519	rs818818	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,170:32:171:0.994:2	0/1:0,95:31:95:1.00:2	0/1:16,7:32:23:0.304:2	0/1:0,186:31:186:1.00:2	0/1:3,186:31:189:0.984:2	0/1:0,190:30:190:1.00:2	0/1:117,64:32:181:0.354:2	0/1:0,184:31:184:1.00:2	0/1:122,73:31:195:0.374:2	0/1:1,183:31:184:0.995:2	0/1:0,171:31:171:1.00:2
chr3	38350543	rs818817	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,174:29:175:0.994:2	0/1:0,103:29:103:1.00:2	0/1:10,11:30:21:0.524:2	0/1:0,180:30:180:1.00:2	0/1:5,166:29:171:0.971:2	0/1:1,182:29:183:0.995:2	0/1:103,77:29:180:0.428:2	0/1:0,178:29:178:1.00:2	0/1:123,60:30:183:0.328:2	0/1:0,187:29:187:1.00:2	0/1:0,180:29:182:1.00:2
chr3	38355225	rs73064822	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	0/1:16,9:29:25:0.360:2	./.
chr3	38355293	rs192274726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:33:87:0.460:2	./.	./.
chr3	38357817	rs2070492	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.	./.	0/1:39,21:29:60:0.350:2	./.	./.
chr3	38357961	rs240033	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,50:30:105:0.476:2	0/1:32,25:30:57:0.439:2	./.	0/1:50,52:31:102:0.510:2	0/1:54,67:30:121:0.554:2	./.	0/1:60,74:31:134:0.552:2	./.	0/1:56,54:32:110:0.491:2	./.	./.
chr3	38401836	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr3	38401839	rs818850	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:31:134:1.00:2	0/1:1,84:30:85:0.988:2	0/1:17,6:31:23:0.261:2	0/1:1,189:31:190:0.995:2	0/1:0,193:30:193:1.00:2	0/1:1,196:30:197:0.995:2	0/1:3,197:30:200:0.985:2	0/1:0,195:30:195:1.00:2	0/1:0,190:31:190:1.00:2	0/1:2,135:31:137:0.985:2	0/1:0,155:30:155:1.00:2
chr3	38404472	rs17118	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,16:31:49:0.327:2	0/1:17,16:30:33:0.485:2	./.	./.	./.	./.	0/1:0,35:31:35:1.00:2	0/1:39,29:30:68:0.426:2	./.	0/1:39,24:31:63:0.381:2	./.
chr3	38406773	rs704943	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:33:25:1.00:2	0/1:0,17:31:17:1.00:2	0/1:3,5:32:8:0.625:2	0/1:0,34:31:34:1.00:2	0/1:0,39:31:39:1.00:2	0/1:1,38:31:39:0.974:2	0/1:0,33:31:33:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,28:31:28:1.00:2
chr3	38407117	rs2234610	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:31:31:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38408361	rs843890	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:1,20:33:21:0.952:2	0/1:2,4:32:6:0.667:2	0/1:0,34:31:34:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,36:34:36:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,55:33:55:1.00:2
chr3	38519424	rs2070489	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:52,45:33:98:0.464:2	0/1:33,26:32:59:0.441:2	0/1:0,26:33:26:1.00:2	./.	./.	0/1:2,122:33:124:0.984:2	0/1:1,113:33:114:0.991:2	0/1:1,88:32:89:0.989:2	0/1:0,111:33:111:1.00:2	0/1:0,116:33:116:1.00:2	0/1:71,39:32:110:0.355:2
chr3	38520727	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,58:34:123:0.472:2	./.	./.
chr3	38524742	rs1046048	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,42:30:90:0.467:2	0/1:37,24:31:61:0.393:2	./.	./.	./.	0/1:0,94:31:94:1.00:2	0/1:1,145:31:146:0.993:2	0/1:82,72:31:154:0.468:2	0/1:50,41:32:91:0.451:2	0/1:0,91:32:91:1.00:2	0/1:44,43:32:87:0.494:2
chr3	38565706	rs137953389	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38592406	rs1805126	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:14,15:30:29:0.517:2	./.	./.	0/1:0,49:28:49:1.00:2	0/1:22,14:30:36:0.389:2	./.	./.
chr3	38597188	rs199473266	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,5:31:117:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr3	38601671	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:34:136:0.029:2	./.	./.	./.	./.	./.	./.
chr3	38601875	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,5:28:157:0.032:2	./.	./.	./.	./.	./.	./.
chr3	38622467	rs7430407	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,183:33:183:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,114:34:114:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,115:32:115:1.00:2
chr3	38645420	rs1805124	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,26:29:79:0.329:2	0/1:31,18:29:49:0.367:2	./.	0/1:5,81:30:86:0.942:2	0/1:57,34:30:91:0.374:2	0/1:61,57:31:118:0.483:2	0/1:68,40:30:108:0.370:2	0/1:3,101:30:104:0.971:2	./.	./.	0/1:42,34:31:76:0.447:2
chr3	38674712	rs6599230	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,35:30:35:1.00:2	0/1:19,12:30:31:0.387:2	0/1:1,44:30:45:0.978:2	0/1:0,31:30:31:1.00:2	0/1:1,46:29:47:0.979:2	0/1:0,39:31:39:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,31:30:31:1.00:2
chr3	38739574	rs6599241	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:30:99:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,150:30:150:1.00:2	0/1:0,148:30:148:1.00:2	0/1:0,179:30:179:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,176:30:176:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,101:30:101:1.00:2
chr3	38739622	rs77804526	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,41:33:107:0.383:2	./.
chr3	38739845	rs6599242	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:33:114:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,162:32:162:1.00:2	0/1:67,73:32:140:0.521:2	0/1:0,151:33:151:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,97:33:97:1.00:2
chr3	38740001	rs78425180	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:30:89:0.483:2	./.
chr3	38748833	rs6790627	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,60:32:114:0.526:2	0/1:30,31:32:61:0.508:2	0/1:9,4:33:13:0.308:2	0/1:69,44:31:113:0.389:2	0/1:71,53:32:124:0.427:2	./.	./.	./.	./.	0/1:44,61:32:105:0.581:2	./.
chr3	38763863	rs6771157	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,75:30:169:0.444:2	0/1:87,83:29:170:0.488:2	0/1:62,44:29:106:0.415:2	./.	./.
chr3	38764998	rs12632942	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,44:33:94:0.468:2	0/1:47,40:33:87:0.460:2	0/1:52,34:33:87:0.395:2	./.	./.
chr3	38766675	rs6795970	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,118:32:119:1.00:2	0/1:63,39:31:102:0.382:2	0/1:89,55:32:144:0.382:2	0/1:57,39:32:96:0.406:2	0/1:0,89:33:90:1.00:2	0/1:41,35:32:76:0.461:2	0/1:45,35:31:80:0.438:2
chr3	38766701	rs6791171	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,45:33:95:0.479:2	./.	./.
chr3	38766722	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2
chr3	38768247	rs59468016	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,41:31:75:0.547:2	0/1:42,31:30:73:0.425:2	0/1:33,44:31:77:0.571:2	./.	./.
chr3	38768300	rs57326399	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,67:30:107:0.626:2	0/1:47,47:29:94:0.500:2	0/1:58,40:30:98:0.408:2	./.	./.
chr3	38768334	rs7374804	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,55:31:129:0.426:2	0/1:68,48:32:116:0.414:2	./.	./.	./.	./.	./.
chr3	38770299	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,58:28:116:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr3	38793940	rs7630989	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,32:31:55:0.582:2	./.
chr3	38793989	rs7617919	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:29:41:0.317:2	0/1:23,19:31:42:0.452:2	0/1:25,14:32:39:0.359:2	./.	./.
chr3	38798171	rs62244070	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:31:14:0.571:2	0/1:7,11:32:18:0.611:2	./.	./.
chr3	38802197	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr3	38802251	rs7641844	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,14:32:38:0.368:2	0/1:16,14:32:30:0.467:2	0/1:19,22:31:41:0.537:2	0/1:17,14:33:31:0.452:2	./.
chr3	38888764	rs62244134	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:31:69:0.377:2	./.	./.
chr3	38936134	rs33985936	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:77,62:32:139:0.446:2	0/1:48,41:31:89:0.461:2	./.	./.	0/1:0,160:31:160:1.00:2	./.	./.	./.	0/1:91,98:33:189:0.519:2	0/1:65,77:32:142:0.542:2	./.
chr3	38945560	rs4073113	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,53:30:139:0.381:2	0/1:55,29:29:84:0.345:2	0/1:11,6:30:17:0.353:2	0/1:92,65:30:157:0.414:2	./.	0/1:79,76:30:155:0.490:2	0/1:3,128:30:131:0.977:2	0/1:3,119:30:122:0.975:2	0/1:1,127:31:128:0.992:2	0/1:73,48:30:122:0.397:2	0/1:85,83:31:168:0.494:2
chr3	38991598	rs78812474	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	./.	./.	./.	./.	./.
chr3	39108050	rs148407227	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,43:33:99:0.434:2	0/1:25,23:32:48:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	39111140	rs2293312	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,20:32:51:0.392:2	0/1:29,11:32:40:0.275:2	0/1:4,3:32:7:0.429:2	0/1:21,27:32:48:0.563:2	0/1:0,48:32:48:1.00:2	0/1:27,21:31:48:0.438:2	./.	./.	./.	0/1:42,20:33:62:0.323:2	0/1:38,41:33:79:0.519:2
chr3	39141946	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.	./.
chr3	39144354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.
chr3	39150614	rs190808723	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,34:31:80:0.425:2	./.	./.	./.	./.	./.	./.
chr3	39152345	rs1112438	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,49:32:99:0.495:2	0/1:28,32:32:60:0.533:2	0/1:9,3:32:12:0.250:2	0/1:92,58:31:150:0.387:2	0/1:1,81:31:82:0.988:2	./.	./.	./.	./.	0/1:70,47:32:117:0.402:2	0/1:57,59:31:116:0.509:2
chr3	39152438	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:28:95:0.042:2
chr3	39161456	rs1274972	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,35:32:84:0.417:2	0/1:37,31:32:68:0.456:2	0/1:6,5:32:11:0.455:2	0/1:72,50:32:122:0.410:2	0/1:2,63:32:65:0.969:2	0/1:78,49:32:127:0.386:2	./.	./.	./.	0/1:34,38:33:72:0.528:2	0/1:76,62:32:138:0.449:2
chr3	39161464	rs1274971	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,32:32:77:0.416:2	0/1:32,28:32:60:0.467:2	0/1:2,3:31:5:0.600:2	0/1:66,49:31:115:0.426:2	0/1:1,52:32:53:0.981:2	0/1:73,42:31:115:0.365:2	./.	./.	./.	0/1:27,35:32:62:0.565:2	0/1:72,56:32:128:0.438:2
chr3	39161508	rs186774683	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:31:40:0.400:2	./.	./.	./.	./.
chr3	39170246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,45:30:79:0.570:2	./.	./.	./.	./.	./.	./.
chr3	39178437	rs35934336	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:33:112:0.455:2	./.	./.
chr3	39180099	rs784498	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,57:30:119:0.479:2	0/1:29,38:30:67:0.567:2	0/1:9,4:32:13:0.308:2	0/1:86,94:30:181:0.522:2	./.	0/1:0,144:30:145:1.00:2	0/1:1,121:30:122:0.992:2	0/1:2,172:30:175:0.989:2	0/1:1,152:31:153:0.993:2	0/1:78,54:31:132:0.409:2	0/1:87,57:32:144:0.396:2
chr3	39180100	rs80238762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,57:32:146:0.390:2
chr3	39180263	rs704959	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,26:32:55:0.473:2	0/1:12,15:31:27:0.556:2	0/1:1,3:26:4:0.750:2	0/1:28,10:33:38:0.263:2	./.	0/1:31,21:31:52:0.404:2	0/1:1,22:32:23:0.957:2	0/1:1,44:32:45:0.978:2	0/1:0,46:33:46:1.00:2	0/1:19,22:32:41:0.537:2	0/1:27,33:33:60:0.550:2
chr3	39184959	rs1274958	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,48:32:119:0.407:2	0/1:47,27:32:74:0.365:2	0/1:14,4:32:18:0.222:2	0/1:88,83:31:171:0.485:2	./.	0/1:0,126:30:126:1.00:2	0/1:0,178:31:178:1.00:2	0/1:1,127:31:128:0.992:2	0/1:0,141:32:141:1.00:2	0/1:70,48:32:118:0.407:2	0/1:82,55:31:137:0.401:2
chr3	39185077	rs1274957	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,39:29:89:0.448:2	0/1:22,30:30:52:0.577:2	0/1:8,6:31:14:0.429:2	0/1:85,64:29:149:0.430:2	./.	0/1:66,62:29:128:0.484:2	0/1:2,166:29:170:0.988:2	0/1:0,111:30:112:1.00:2	0/1:1,113:30:117:0.991:2	0/1:60,32:29:93:0.348:2	0/1:59,48:31:108:0.449:2
chr3	39185248	rs784519	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:2,55:32:57:0.965:2	0/1:8,4:31:12:0.333:2	0/1:82,54:33:136:0.397:2	0/1:0,187:32:189:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,172:32:172:1.00:2	0/1:1,168:32:169:0.994:2	0/1:0,145:33:145:1.00:2	0/1:0,107:32:107:1.00:2	0/1:68,62:32:130:0.477:2
chr3	39186728	rs784517	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,31:30:62:0.500:2	0/1:13,18:32:31:0.581:2	./.	0/1:30,65:31:95:0.684:2	./.	./.	0/1:56,58:31:114:0.509:2	0/1:4,120:32:124:0.968:2	0/1:1,104:32:105:0.990:2	0/1:43,57:32:100:0.570:2	0/1:33,35:31:68:0.515:2
chr3	39225585	rs146284335	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,60:30:179:0.335:2	./.	./.	./.	./.	./.
chr3	39226114	rs34810344	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:30:16:0.625:2	./.	./.	./.	./.	./.	0/1:66,49:31:115:0.426:2	./.	./.
chr3	39226127	rs3732383	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,37:31:80:0.463:2	0/1:34,24:32:58:0.414:2	0/1:9,6:33:15:0.400:2	0/1:41,44:32:85:0.518:2	./.	./.	./.	./.	0/1:52,60:32:112:0.536:2	./.	./.
chr3	39227535	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,20:34:62:0.323:2	./.	./.
chr3	39227664	rs61736155	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,18:32:43:0.419:2	0/1:9,14:31:23:0.609:2	./.	0/1:29,22:31:51:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr3	39228043	rs11711871	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,14:32:39:0.359:2	0/1:14,10:31:24:0.417:2	./.	0/1:24,14:29:38:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr3	39228676	rs62244166	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:31:30:0.500:2	0/1:31,19:29:50:0.380:2	./.	./.	./.
chr3	39228772	rs61736153	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:31:59:0.407:2	./.	./.	./.
chr3	39229011	rs74827471	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:32:41:0.512:2	./.	./.	./.	./.	./.
chr3	39229900	rs6805248	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:29:60:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,100:30:100:1.00:2	0/1:1,72:30:73:0.986:2	0/1:0,61:29:61:1.00:2	0/1:0,67:30:67:1.00:2
chr3	39230439	rs115099187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:33:36:0.417:2	./.	./.
chr3	39230490	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:32:80:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr3	39230607	rs146075058	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,51:32:109:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr3	39230997	rs2271487	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,5:31:14:0.357:2	0/1:0,3:29:3:1.00:2	0/1:10,14:29:24:0.583:2	./.	./.	./.	./.	0/1:19,12:32:31:0.387:2	./.	./.
chr3	39307162	rs3732378	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:38,40:30:78:0.513:2	0/1:44,39:30:85:0.470:2	./.	./.	./.	./.	./.
chr3	39307256	rs3732379	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.	0/1:1,97:31:98:0.990:2	0/1:51,55:31:106:0.519:2	./.	./.	./.	./.	0/1:66,73:32:139:0.525:2
chr3	39373902	rs2853699	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,86:32:180:0.480:2	0/1:59,45:32:104:0.433:2	0/1:21,7:33:28:0.250:2	0/1:109,86:32:195:0.441:2	0/1:3,149:32:152:0.980:2	0/1:111,85:32:196:0.434:2	./.	0/1:127,63:32:191:0.332:2	./.	0/1:109,78:32:187:0.417:2	0/1:101,91:32:192:0.474:2
chr3	39374931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.
chr3	39431081	rs2270770	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:30:92:1.00:2	0/1:1,50:30:51:0.980:2	0/1:10,6:28:16:0.375:2	0/1:1,135:30:136:0.993:2	0/1:5,92:30:97:0.948:2	0/1:0,103:29:103:1.00:2	0/1:2,105:30:107:0.981:2	0/1:73,71:30:144:0.493:2	0/1:49,57:31:107:0.538:2	./.	0/1:68,54:31:122:0.443:2
chr3	39433380	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,5:30:143:0.035:2	./.	./.	./.	./.	./.	./.
chr3	39433396	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,5:30:131:0.038:2	./.	./.	./.	./.	./.	./.
chr3	39453160	rs2269350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2	./.	./.
chr3	40231883	rs1317317	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:30:58:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,58:29:58:1.00:2	0/1:27,23:29:50:0.460:2	0/1:0,57:28:57:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,58:29:58:1.00:2
chr3	40251392	rs1799418	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,52:31:121:0.430:2	0/1:0,85:31:85:1.00:2	./.	0/1:42,42:31:84:0.500:2	0/1:53,58:32:111:0.523:2	0/1:0,87:32:87:1.00:2	./.	0/1:0,88:31:88:1.00:2
chr3	40286017	rs4618168	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:30:117:1.00:2	0/1:1,53:28:54:0.981:2	0/1:0,29:29:29:1.00:2	0/1:66,77:30:143:0.538:2	./.	0/1:75,75:29:150:0.500:2	0/1:0,128:29:128:1.00:2	0/1:72,55:28:127:0.433:2	./.	0/1:0,112:29:112:1.00:2	./.
chr3	40351484	rs11709089	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:29:32:1.00:2	0/1:0,15:29:15:1.00:2	0/1:1,5:31:6:0.833:2	0/1:29,15:29:44:0.341:2	./.	0/1:18,16:31:34:0.471:2	0/1:21,11:29:32:0.344:2	0/1:26,10:31:36:0.278:2	./.	0/1:15,21:30:37:0.583:2	./.
chr3	40464372	rs144967530	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.
chr3	40468896	rs1047855	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,141:32:141:1.00:2	0/1:2,75:31:77:0.974:2	0/1:13,15:31:28:0.536:2	./.	./.	0/1:103,83:31:186:0.446:2	0/1:102,92:31:195:0.474:2	0/1:104,88:31:192:0.458:2	./.	0/1:79,91:32:171:0.535:2	./.
chr3	40498845	rs2276868	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,138:30:142:0.972:2	0/1:0,188:30:188:1.00:2	0/1:70,78:30:148:0.527:2	0/1:102,88:31:190:0.463:2	0/1:106,76:31:182:0.418:2	0/1:0,137:30:137:1.00:2	0/1:85,53:30:138:0.384:2	0/1:0,140:30:140:1.00:2
chr3	40498933	rs4973904	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,28:31:28:1.00:2	0/1:4,5:32:9:0.556:2	0/1:2,51:32:53:0.962:2	0/1:1,46:31:47:0.979:2	0/1:0,39:31:39:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,54:31:54:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,28:31:28:1.00:2
chr3	40502907	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.
chr3	40502918	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.	./.
chr3	40502938	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2
chr3	40503506	rs148931839	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:32:25:0.480:2	0/1:9,10:32:19:0.526:2	./.	./.	./.	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	./.
chr3	40503709	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,6:33:58:0.103:2	./.
chr3	40519429	rs4553952	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,88:33:88:1.00:2	0/1:1,92:32:93:0.989:2	0/1:0,147:32:147:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,104:34:104:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,115:32:115:1.00:2
chr3	40528547	rs61733800	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	40529603	rs113564598	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:32:18:0.500:2	./.	./.	./.	0/1:97,68:31:165:0.412:2	./.	./.	./.	./.
chr3	40553953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.
chr3	40558163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr3	41278119	rs77750814	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,11:17:51:0.216:2	./.
chr3	41288466	rs6769117	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,53:31:110:0.482:2	0/1:46,39:32:85:0.459:2
chr3	41723280	rs6763446	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.
chr3	41756965	rs61744388	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	0/1:33,15:30:48:0.313:2	0/1:1,68:30:69:0.986:2	0/1:40,26:30:66:0.394:2	./.	./.	0/1:30,29:31:59:0.492:2	0/1:30,27:32:57:0.474:2
chr3	41756986	rs61744385	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	0/1:34,17:30:51:0.333:2	0/1:1,64:31:65:0.985:2	0/1:36,28:31:64:0.438:2	./.	./.	0/1:25,27:31:52:0.519:2	0/1:29,27:32:56:0.482:2
chr3	41831203	rs17215589	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,14:29:38:0.368:2	0/1:0,88:31:88:1.00:2	0/1:47,25:31:73:0.347:2	./.	./.	0/1:32,25:31:57:0.439:2	./.
chr3	41841716	rs4973986	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,169:32:170:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,176:33:176:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,124:32:125:1.00:2	0/1:0,188:32:188:1.00:2	0/1:1,176:33:177:0.994:2	0/1:0,156:33:156:1.00:2	0/1:2,174:31:176:0.989:2
chr3	41860955	rs17063572	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:30:30:0.400:2	./.
chr3	41877414	rs3774372	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:33:28:0.607:2	./.	0/1:64,26:31:90:0.289:2	0/1:4,112:32:116:0.966:2	0/1:67,39:33:106:0.368:2	./.	./.	0/1:64,59:33:123:0.480:2	0/1:82,62:34:144:0.431:2
chr3	41925398	rs1052501	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,181:32:183:0.989:2	0/1:0,116:32:116:1.00:2	0/1:32,11:31:43:0.256:2	0/1:2,175:31:177:0.989:2	0/1:122,69:31:191:0.361:2	./.	0/1:109,64:32:173:0.370:2	0/1:2,181:31:183:0.989:2	0/1:2,179:32:181:0.989:2	./.	0/1:109,69:31:178:0.388:2
chr3	41925423	rs1716687	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:33:167:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,156:32:156:1.00:2	0/1:2,158:32:160:0.988:2	0/1:2,156:32:158:0.987:2	0/1:1,147:33:148:0.993:2	0/1:95,71:32:166:0.428:2	0/1:0,144:32:144:1.00:2
chr3	41937000	rs1717003	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,44:32:44:1.00:2	0/1:25,19:31:44:0.432:2	./.	0/1:27,18:31:45:0.400:2	0/1:1,41:32:42:0.976:2	0/1:0,48:33:48:1.00:2	./.	0/1:73,34:32:107:0.318:2
chr3	41939929	.	T	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.