param	value
cmd_line	cuffdiff -q --no-update-check -b /home/rceprian/Projects/pipeline_mode/03_refseq_pipeline/Sparus_aurata_genome_VER21.fa --total-hits-norm -o /home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/07_Cuffdiff/BI_vs_BC -L BC,BI /home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/06_Cufflinks/merged.gtf /home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_03_26333_S7_R1_001.bam,/home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_06_26336_S10_R1_001.bam,/home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_09_26339_S13_R1_001.bam,/home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_12_26342_S16_R1_001.bam /home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_16_26346_S2_R1_001.bam,/home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_20_26350_S6_R1_001.bam,/home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_24_26354_S10_R1_001.bam,/home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_28_26358_S14_R1_001.bam,/home/rceprian/Projects/pipeline_mode/PMQDE_SE_2/05_Tophat/ZFG-17-12_32_26362_S18_R1_001.bam 
version	2.2.1
SVN_revision	4237
boost_version	104700