Basic Statistics
Measure | Value |
---|---|
Filename | ZFG-17-12_32_26362_S18_R1_001.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18000836 |
Sequences flagged as poor quality | 0 |
Sequence length | 45-51 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTGGAGTTTAGCGGTATCTCTCGGCCAGAGCCAGAGCCAAGTTCTGCAGGA | 18964 | 0.10535066260255913 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCTACTA | 5035 | 0.0 | 18.391842 | 43 |
TCCTACT | 5230 | 0.0 | 17.722431 | 42 |
ATTCCTA | 5475 | 0.0 | 17.283474 | 40 |
TTCCTAC | 5645 | 0.0 | 16.608185 | 41 |
GCCAATT | 7265 | 0.0 | 15.154716 | 1 |
ATATTCC | 6395 | 0.0 | 14.829829 | 38 |
TTAGCGG | 6925 | 0.0 | 14.2152195 | 8 |
CGCTTAA | 970 | 0.0 | 14.138659 | 41 |
GCGGTAT | 6795 | 0.0 | 14.089137 | 11 |
TTTAGCG | 7585 | 0.0 | 14.074874 | 7 |
GGGGATT | 5180 | 0.0 | 13.561239 | 1 |
GAGTTAA | 6875 | 0.0 | 13.270873 | 17 |
CCAATTT | 7660 | 0.0 | 13.139312 | 2 |
TGAGTTA | 6990 | 0.0 | 13.020535 | 16 |
CGGTATC | 7715 | 0.0 | 13.020347 | 12 |
TATTCCT | 7330 | 0.0 | 12.968863 | 39 |
AAGCACG | 3255 | 0.0 | 12.843318 | 45 |
GTGCATT | 7065 | 0.0 | 12.747422 | 1 |
GTCACAT | 8390 | 0.0 | 12.720112 | 1 |
GTTCGAT | 2520 | 0.0 | 12.687099 | 1 |