Basic Statistics
Measure | Value |
---|---|
Filename | ZFG-17-12_20_26350_S6_R1_001.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18319281 |
Sequences flagged as poor quality | 0 |
Sequence length | 45-51 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTCAGAGTGCTTCTGGCTCAGCTTGGTGTAAGCATTCTTGATGTCGTCCA | 24100 | 0.13155538145847537 | No Hit |
GTGGAGTTTAGCGGTATCTCTCGGCCAGAGCCAGAGCCAAGTTCTGCAGGA | 23517 | 0.12837294214767492 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCTACTA | 5925 | 0.0 | 23.312336 | 43 |
TCCTACT | 6155 | 0.0 | 22.661798 | 42 |
ATTCCTA | 6260 | 0.0 | 22.188227 | 40 |
TTCCTAC | 6570 | 0.0 | 21.283825 | 41 |
ATATTCC | 7185 | 0.0 | 19.454441 | 38 |
GCCAATT | 8715 | 0.0 | 17.95701 | 1 |
GCTTATT | 5130 | 0.0 | 17.42568 | 1 |
ATACGAT | 2220 | 0.0 | 17.411276 | 37 |
GAGTTAA | 8265 | 0.0 | 17.23797 | 17 |
TATTCCT | 8325 | 0.0 | 16.871252 | 39 |
GCGGTAT | 6775 | 0.0 | 16.651443 | 11 |
TTTAGCG | 7710 | 0.0 | 16.499851 | 7 |
TGAGTTA | 8620 | 0.0 | 16.476095 | 16 |
TTAGCGG | 7075 | 0.0 | 16.391722 | 8 |
GATACGA | 2405 | 0.0 | 16.352003 | 36 |
GTTCGAA | 1440 | 0.0 | 16.106136 | 1 |
CGCTACG | 925 | 0.0 | 16.034307 | 36 |
CATATTC | 8900 | 0.0 | 15.907638 | 37 |
GTTAAAC | 9065 | 0.0 | 15.518417 | 19 |
AGAGTGC | 8245 | 0.0 | 15.373998 | 5 |