Basic Statistics
Measure | Value |
---|---|
Filename | ZFG-17-12_20_26350_S6_R1_001.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19171471 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTCAGAGTGCTTCTGGCTCAGCTTGGTGTAAGCATTCTTGATGTCGTCCA | 24728 | 0.1289833211024861 | No Hit |
GTGGAGTTTAGCGGTATCTCTCGGCCAGAGCCAGAGCCAAGTTCTGCAGGA | 24434 | 0.1274497924546322 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCTACTA | 5690 | 0.0 | 22.84923 | 43 |
TCCTACT | 6070 | 0.0 | 21.382915 | 42 |
ATTCCTA | 6165 | 0.0 | 21.016325 | 40 |
TTCCTAC | 6310 | 0.0 | 20.854107 | 41 |
ATATTCC | 7150 | 0.0 | 18.309685 | 38 |
GCTTATT | 5710 | 0.0 | 17.68903 | 1 |
GCGGTAT | 7015 | 0.0 | 16.834364 | 11 |
GTCCATT | 8750 | 0.0 | 16.77394 | 1 |
TTAGCGG | 7150 | 0.0 | 16.645088 | 8 |
GCCAATT | 9395 | 0.0 | 16.342274 | 1 |
TTTAGCG | 8080 | 0.0 | 16.149698 | 7 |
GAGTTAA | 8470 | 0.0 | 16.066328 | 17 |
CTTATGA | 4630 | 0.0 | 16.031796 | 18 |
TGAGTTA | 8475 | 0.0 | 15.764741 | 16 |
ATACGAT | 2255 | 0.0 | 15.660993 | 37 |
CGGTATC | 7625 | 0.0 | 15.427969 | 12 |
GTTCGAT | 2475 | 0.0 | 15.394786 | 1 |
AGAGTGC | 8540 | 0.0 | 15.333118 | 5 |
GTTAAAC | 8760 | 0.0 | 15.277844 | 19 |
GTTTATT | 10885 | 0.0 | 15.244442 | 1 |