FastQCFastQC Report
lun 21 ene 2019
JVB-R12_S7_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameJVB-R12_S7_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14415240
Sequences flagged as poor quality0
Sequence length35-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT741210.5141849875548378No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA225510.156438602479043No Hit
CTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTT145620.1010180891889417No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCCTT20050.022.5491281
CGCGTAA7900.016.2882881
GCGTAAC10500.013.2483692
CGGGATA5053.6379788E-1213.0846781
TCGTTCG10250.012.89973128
ACGGTTA24100.012.8429473
GACCGTT12150.012.31294126
GCCGTTA25350.012.07578920
CCGTTAA25850.011.84242121
CGCGATT2651.4931583E-411.8112931
GGTACCG26550.011.39600211
CGCTACT7750.011.2186121
CGGGCTA9000.011.2061461
TCGCGTA7800.011.1464652
GTCGGTA5351.3915269E-911.0508571
GTCGCTA13250.011.02842727
CACGGTT31950.010.6671152
ACCGTTC14700.010.65063227
GTACCGC29600.010.57426312
GCGATCG7301.8189894E-1210.48724541