Basic Statistics
Measure | Value |
---|---|
Filename | JVB-R12_S7_R1_001.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14415240 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 74121 | 0.5141849875548378 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 22551 | 0.156438602479043 | No Hit |
CTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTT | 14562 | 0.1010180891889417 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCCCTT | 2005 | 0.0 | 22.549128 | 1 |
CGCGTAA | 790 | 0.0 | 16.288288 | 1 |
GCGTAAC | 1050 | 0.0 | 13.248369 | 2 |
CGGGATA | 505 | 3.6379788E-12 | 13.084678 | 1 |
TCGTTCG | 1025 | 0.0 | 12.899731 | 28 |
ACGGTTA | 2410 | 0.0 | 12.842947 | 3 |
GACCGTT | 1215 | 0.0 | 12.312941 | 26 |
GCCGTTA | 2535 | 0.0 | 12.075789 | 20 |
CCGTTAA | 2585 | 0.0 | 11.842421 | 21 |
CGCGATT | 265 | 1.4931583E-4 | 11.811293 | 1 |
GGTACCG | 2655 | 0.0 | 11.396002 | 11 |
CGCTACT | 775 | 0.0 | 11.218612 | 1 |
CGGGCTA | 900 | 0.0 | 11.206146 | 1 |
TCGCGTA | 780 | 0.0 | 11.146465 | 2 |
GTCGGTA | 535 | 1.3915269E-9 | 11.050857 | 1 |
GTCGCTA | 1325 | 0.0 | 11.028427 | 27 |
CACGGTT | 3195 | 0.0 | 10.667115 | 2 |
ACCGTTC | 1470 | 0.0 | 10.650632 | 27 |
GTACCGC | 2960 | 0.0 | 10.574263 | 12 |
GCGATCG | 730 | 1.8189894E-12 | 10.487245 | 41 |