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Tutorial RNASeq of comparative transcriptomics based on the species Sparus aurata

  1. Home
  2. Courses
  3. Tutorial RNASeq differential expression
  4. Pipeline mode: Mapping & Counting protocol results
  5. 07_edgeR
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
    • 2.2. - MAPPING & COUNTING PROTOCOL
      • 2.2.1 - Preparing your experiment
      • 2.2.2 - Quality analysis and preprocessing
      • 2.2.3 - Mapping
      • 2.2.4 - Postprocessing
      • 2.2.5 - Differential Expression analysis
  • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 3.2 - Mapping & Counting protocol
  • 4. BIBLIOGRAPHY
  • CITE US

07_edgeR

    • BCVplot_plot.png
    • BI_vs_BCBI_vs_BC
    • Dispersion_BCV.txtDispersion_BCV.txt
    • edgeR_logedgeR_log
    • exploration_plot.png
Previous activity ◄ 06_CORSET
  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
    • 2.1.1 - Preparing your experiment
    • 2.1.2 - Quality analysis and preprocessing
    • 2.1.3 - Mapping
    • 2.1.4 - Transcriptome Assembly
    • 2.1.5 - Differential Expression analysis
    • 2.1.6 - GOSeq
    • 2.2. - MAPPING & COUNTING PROTOCOL
    • 2.2.1 - Prepare your experiment for the mapping & counting analysis
    • 2.2.2 - Quality analysis and preprocessing
    • 2.2.3 - Mapping
    • 2.2.4 - Postprocessing
    • 2.2.5 - Differential Expression analysis
    • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 3.2 - Mapping & Counting protocol
    • 4. BIBLIOGRAPHY
    • Pipeline mode: Tophat & Cufflinks protocol results
    • Pipeline mode: Mapping & Counting protocol results
    • CITE US
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