Font size
A-
A
A+
Site color
R
A
A
A
MAIN
eCAMPUS
CLASS
FORUM
English (en)
Español - Internacional (es)
Acceder
Skip to main content
Tutorial RNASeq of comparative transcriptomics based on the species Sparus aurata
Home
Courses
Tutorial RNASeq differential expression
Pipeline mode: Mapping & Counting protocol results
06_CORSET
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating RNASeq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1. - TOPHAT/HISAT2 & CUFFLINKS
2.1.1 - Preparing your experiment
2.1.2 - Quality analysis and preprocessing
2.1.3 - Mapping
2.1.4 - Transcriptome Assembly
2.1.5 - Differential Expression analysis
2.1.6 - GOSeq
2.2. - MAPPING & COUNTING PROTOCOL
2.2.1 - Preparing your experiment
2.2.2 - Quality analysis and preprocessing
2.2.3 - Mapping
2.2.4 - Postprocessing
2.2.5 - Differential Expression analysis
3. PIPELINE MODE TUTORIAL
3.1 - TopHat/Hisat2 & Cufflinks protocol
3.2 - Mapping & Counting protocol
4. BIBLIOGRAPHY
CITE US
06_CORSET
clusters.txt
counts.csv
counts.txt
Download folder
Previous activity
◄ 05_Bowtie2
Jump to...
Jump to...
01_FASTQC
02_CUTADAPT
03_PRINSEQ
04_FASTQC
05_TOPHAT
06_CUFFLINKS
06_CUFFDIFF
01_FASTQC
02_CUTADAPT
03_PRINSEQ
04_FASTQC
05_Bowtie2
07_edgeR
Next activity
07_edgeR ►
Home
Calendar
Course sections
CONTENTS
1. PRELIMINARY INFORMATION
1.1 - Tutorial objective
1.2 - Tutorial material and case study
1.3 - Experiment design and support
1.4 - Installing and activating RNASeq and the Server-Side
2. STEP-BY-STEP MODE TUTORIAL
2.1. - TOPHAT/HISAT2 & CUFFLINKS
2.1.1 - Preparing your experiment
2.1.2 - Quality analysis and preprocessing
2.1.3 - Mapping
2.1.4 - Transcriptome Assembly
2.1.5 - Differential Expression analysis
2.1.6 - GOSeq
2.2. - MAPPING & COUNTING PROTOCOL
2.2.1 - Prepare your experiment for the mapping & counting analysis
2.2.2 - Quality analysis and preprocessing
2.2.3 - Mapping
2.2.4 - Postprocessing
2.2.5 - Differential Expression analysis
3. PIPELINE MODE TUTORIAL
3.1 - TopHat/Hisat2 & Cufflinks protocol
3.2 - Mapping & Counting protocol
4. BIBLIOGRAPHY
Pipeline mode: Tophat & Cufflinks protocol results
Pipeline mode: Mapping & Counting protocol results
CITE US
About us
Team
Publications
R&D
Patents & trademarks
Announcements
Careers
Journal
Sequencing Partners
Biotechvana
Valencia Lab
Parc Cientific Universitat de Valencia
Carrer del Catedràtic Agustín Escardino, 9. 46980 Paterna (Valencia) Spain
Madrid Lab
Parque Científico de Madrid
Campus de Cantoblanco
Calle Faraday 7, 28049 Madrid Spain
Contact us
Phone: +34 960 06 74 93
Email:
biotechvana@biotechvana.com
Esta plataforma forma parte de: IVACE PROJECT IMDIGB/2020/56
Projectes de Digitalizació de PIME (DIGITALIZA-CV TELETREBALL)2020
Biotechvana © 2021
eCampus Privacy policy
eCampus Terms of use
