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Tutorial RNASeq for detection of pre-tumoral biomarkers using a group case study of Proliferative Verrucous Leukoplakia

  1. Home
  2. Courses
  3. RNASeq Leukoplakia
  4. Pipeline mode: Tophat & Cufflinks protocol results
  5. 03_TOPHAT
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
  • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
  • 4. ACKNOWLEDGEMENTS
  • 5. BIBLIOGRAPHY
  • CITE US

03_TOPHAT

    • align_summaryalign_summary
    • JVB-R1_S1_R1_001.bamJVB-R1_S1_R1_001.bam
    • JVB-R2_S2_R1_001.bamJVB-R2_S2_R1_001.bam
    • JVB-R3_S8_R1_001.bamJVB-R3_S8_R1_001.bam
    • JVB-R4_S9_R1_001.bamJVB-R4_S9_R1_001.bam
    • JVB-R5_S3_R1_001.bamJVB-R5_S3_R1_001.bam
    • JVB-R6_S4_R1_001.bamJVB-R6_S4_R1_001.bam
    • JVB-R7_S10_R1_001.bamJVB-R7_S10_R1_001.bam
    • JVB-R8_S11_R1_001.bamJVB-R8_S11_R1_001.bam
    • JVB-R9_S5_R1_001.bamJVB-R9_S5_R1_001.bam
    • JVB-R10_S12_R1_001.bamJVB-R10_S12_R1_001.bam
    • JVB-R11_S6_R1_001.bamJVB-R11_S6_R1_001.bam
    • JVB-R12_S7_R1_001.bamJVB-R12_S7_R1_001.bam
    • JVB-R13_S13_R1_001.bamJVB-R13_S13_R1_001.bam
    • JVB-R14_S14_R1_001.bamJVB-R14_S14_R1_001.bam
    • JVB-R15_S15_R1_001.bamJVB-R15_S15_R1_001.bam
Previous activity ◄ 02_PRINSEQ
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  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
    • 2.1.1 - Preparing your experiment
    • 2.1.2 - Quality analysis and preprocessing
    • 2.1.3 - Mapping
    • 2.1.4 - Transcriptome Assembly
    • 2.1.5 - Differential Expression analysis
    • 2.1.6 - GOSeq
    • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 4. ACKNOWLEDGEMENTS
    • Pipeline mode: Tophat & Cufflinks protocol results
    • 5. BIBLIOGRAPHY
    • CITE US
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