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Tutorial RNASeq for detection of pre-tumoral biomarkers using a group case study of Proliferative Verrucous Leukoplakia

  1. Home
  2. Courses
  3. RNASeq Leukoplakia
  4. RefSeq
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
  • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
  • 4. ACKNOWLEDGEMENTS
  • 5. BIBLIOGRAPHY
  • CITE US

RefSeq

    • gene_annotations.csvgene_annotations.csv
    • homo_sapiens_genome.1.bt2l.gzhomo_sapiens_genome.1.bt2l.gz
    • homo_sapiens_genome.2.bt2l.gzhomo_sapiens_genome.2.bt2l.gz
    • homo_sapiens_genome.3.bt2l.gzhomo_sapiens_genome.3.bt2l.gz
    • homo_sapiens_genome.4.bt2l.gzhomo_sapiens_genome.4.bt2l.gz
    • homo_sapiens_genome.fa.gzhomo_sapiens_genome.fa.gz
    • homo_sapiens_genome.rev.1.bt2l.gzhomo_sapiens_genome.rev.1.bt2l.gz
    • homo_sapiens_genome.rev.2.bt2l.gzhomo_sapiens_genome.rev.2.bt2l.gz
    • homo_sapiens_ref_transcriptome.1.bt2.gzhomo_sapiens_ref_transcriptome.1.bt2.gz
    • homo_sapiens_ref_transcriptome.2.bt2.gzhomo_sapiens_ref_transcriptome.2.bt2.gz
    • homo_sapiens_ref_transcriptome.3.bt2.gzhomo_sapiens_ref_transcriptome.3.bt2.gz
    • homo_sapiens_ref_transcriptome.4.bt2.gzhomo_sapiens_ref_transcriptome.4.bt2.gz
    • homo_sapiens_ref_transcriptome.fa.gzhomo_sapiens_ref_transcriptome.fa.gz
    • homo_sapiens_ref_transcriptome.fa.tlst.gzhomo_sapiens_ref_transcriptome.fa.tlst.gz
    • homo_sapiens_ref_transcriptome.gff.gzhomo_sapiens_ref_transcriptome.gff.gz
    • homo_sapiens_ref_transcriptome.rev.1.bt2.gzhomo_sapiens_ref_transcriptome.rev.1.bt2.gz
    • homo_sapiens_ref_transcriptome.rev.2.bt2.gzhomo_sapiens_ref_transcriptome.rev.2.bt2.gz
    • Homo_sapiens.GRCh38.95.gtf.gzHomo_sapiens.GRCh38.95.gtf.gz
    • pathways_annotations.csvpathways_annotations.csv
  • RefSeq
  • Home
  • Calendar
  • Course sections
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
    • 2.1.1 - Preparing your experiment
    • 2.1.2 - Quality analysis and preprocessing
    • 2.1.3 - Mapping
    • 2.1.4 - Transcriptome Assembly
    • 2.1.5 - Differential Expression analysis
    • 2.1.6 - GOSeq
    • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 4. ACKNOWLEDGEMENTS
    • Pipeline mode: Tophat & Cufflinks protocol results
    • 5. BIBLIOGRAPHY
    • CITE US
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