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Tutorial RNASeq of comparative transcriptomics based on the species Sparus aurata

  1. Página Principal
  2. Nuestros cursos
  3. Tutorial RNASeq differential expression
  4. Pipeline mode: Tophat & Cufflinks protocol results
  5. 02_CUTADAPT
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
    • 2.2. - MAPPING & COUNTING PROTOCOL
      • 2.2.1 - Genome mapping
        • 2.2.1.1 - Preparing your experiment
        • 2.2.1.2 - Quality analysis and preprocessing
        • 2.2.1.3. - Mapping
        • 2.2.1.4 - Postprocessing
        • 2.2.1.5 - Differential Expression analysis
        • 2.2.1.6 - GOseq
      • 2.2.2 - Transcriptome mapping
        • 2.2.2.1 - Preparing your experiment
        • 2.2.2.2 - Quality analysis and preprocessing
        • 2.2.2.3 - Mapping
        • 2.2.2.4 - Postprocesing
        • 2.2.2.5 - Differential Expression
  • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 3.2 - Mapping & Counting protocol
  • 4. BIBLIOGRAPHY
  • CITE US

02_CUTADAPT

 
 
summarysummary
 ZFG-17-12_03_26333_S7_R1_001.fastq.gzZFG-17-12_03_26333_S7_R1_001.fastq.gz
 ZFG-17-12_06_26336_S10_R1_001.fastq.gzZFG-17-12_06_26336_S10_R1_001.fastq.gz
 ZFG-17-12_09_26339_S13_R1_001.fastq.gzZFG-17-12_09_26339_S13_R1_001.fastq.gz
 ZFG-17-12_12_26342_S16_R1_001.fastq.gzZFG-17-12_12_26342_S16_R1_001.fastq.gz
 ZFG-17-12_16_26346_S2_R1_001.fastq.gzZFG-17-12_16_26346_S2_R1_001.fastq.gz
 ZFG-17-12_20_26350_S6_R1_001.fastq.gzZFG-17-12_20_26350_S6_R1_001.fastq.gz
 ZFG-17-12_24_26354_S10_R1_001.fastq.gzZFG-17-12_24_26354_S10_R1_001.fastq.gz
 ZFG-17-12_28_26358_S14_R1_001.fastq.gzZFG-17-12_28_26358_S14_R1_001.fastq.gz
 ZFG-17-12_32_26362_S18_R1_001.fastq.gzZFG-17-12_32_26362_S18_R1_001.fastq.gz
Actividad previa ◄ 01_FASTQC
Siguiente actividad 03_PRINSEQ ►
  • Página Principal
  • Calendario
  • Secciones del curso
    • CONTENTS
    • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
    • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
    • 2.1.1 - Preparing your experiment
    • 2.1.2 - Quality analysis and preprocessing
    • 2.1.3 - Mapping
    • 2.1.4 - Transcriptome Assembly
    • 2.1.5 - Differential Expression analysis
    • 2.1.6 - GOSeq
    • 2.2. - MAPPING & COUNTING PROTOCOL
    • 2.2.1.1 - Prepare your experiment for the mapping & counting analysis
    • 2.2.1.2 - Quality analysis and preprocessing
    • 2.2.1.3 - Mapping
    • 2.2.1.4 - Postprocessing
    • 2.2.1.5 - Differential Expression analysis
    • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 3.2 - Mapping & Counting protocol
    • 4. BIBLIOGRAPHY
    • Pipeline mode: Tophat & Cufflinks protocol results
    • Pipeline mode: Mapping & Counting protocol results
    • CITE US
    • CASE STUDY
    • 2.2.1 - Genome mapping
    • 2.2.1.6 - GOseq
    • 2.2.2 - Transcriptome mapping
    • 2.2.2.1 - Preparing your experiment
    • 2.2.2.2 - Quality analysis and preprocessing
    • 2.2.2.3 - Mapping
    • 2.2.2.4 - Postprocessing
    • 2.2.2.5 - Differential Expression analysis
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