2.2.1.3 - Mapping
In this tutorial we will use Hisat2. To start, go to the Step-by-Step menu path, Mapping & Counting → Mapping → Hisat2 and proceed as indicated in Video 9.
Video 9. Mapping step using Hisat2.
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Expected results from Mapping analysis When Hisat2 is complete, you will receive a bam file per sample with the reads mapped against the reference genome data set. The expected results of this step are available in the following link Mapping Remember you can check how the job was completed by accessing the job tracking panel. To learn more about Hisat2, see https://daehwankimlab.github.io/hisat2/. |
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