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Tutorial RNASeq of comparative transcriptomics based on the species Sparus aurata

  1. Home
  2. Courses
  3. Tutorial RNASeq differential expression
  4. 1.3 - Experiment design and support
◄1. PRELIMINARY INFORMATION2. STEP-BY-STEP MODE TUTORIAL►
  • CONTENTS
  • 1. PRELIMINARY INFORMATION
    • 1.1 - Tutorial objective
    • 1.2 - Tutorial material and case study
    • 1.3 - Experiment design and support
    • 1.4 - Installing and activating RNASeq and the Server-Side
  • 2. STEP-BY-STEP MODE TUTORIAL
    • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
    • 2.2. - MAPPING & COUNTING PROTOCOL
      • 2.2.1 - Preparing your experiment
      • 2.2.2 - Quality analysis and preprocessing
      • 2.2.3 - Mapping
      • 2.2.4 - Postprocessing
      • 2.2.5 - Differential Expression analysis
  • 3. PIPELINE MODE TUTORIAL
    • 3.1 - TopHat/Hisat2 & Cufflinks protocol
    • 3.2 - Mapping & Counting protocol
  • 4. BIBLIOGRAPHY
  • CITE US
  • 1.3 - Experiment design and support


    The DE study will be performed by comparing the BI group (Infected fish) with  the BC group (the control) using associated fastq files as biological replicates. 

    If you have any questions, contact us for support at https://forum.biotechvana.com. AAlternatively, you can visit our chatbot for immediate online support at https://gpro.biotechvana.com/genie.


    ◄1.2 - Tutorial material and case study1.4 - Installing and activating RNASeq and the Server-Side ►
    • Home
    • Calendar
    • Course sections
      • CONTENTS
      • 1. PRELIMINARY INFORMATION
      • 1.1 - Tutorial objective
      • 1.2 - Tutorial material and case study
      • 1.3 - Experiment design and support
      • 1.4 - Installing and activating RNASeq and the Server-Side
      • 2. STEP-BY-STEP MODE TUTORIAL
      • 2.1. - TOPHAT/HISAT2 & CUFFLINKS
      • 2.1.1 - Preparing your experiment
      • 2.1.2 - Quality analysis and preprocessing
      • 2.1.3 - Mapping
      • 2.1.4 - Transcriptome Assembly
      • 2.1.5 - Differential Expression analysis
      • 2.1.6 - GOSeq
      • 2.2. - MAPPING & COUNTING PROTOCOL
      • 2.2.1 - Prepare your experiment for the mapping & counting analysis
      • 2.2.2 - Quality analysis and preprocessing
      • 2.2.3 - Mapping
      • 2.2.4 - Postprocessing
      • 2.2.5 - Differential Expression analysis
      • 3. PIPELINE MODE TUTORIAL
      • 3.1 - TopHat/Hisat2 & Cufflinks protocol
      • 3.2 - Mapping & Counting protocol
      • 4. BIBLIOGRAPHY
      • Pipeline mode: Tophat & Cufflinks protocol results
      • Pipeline mode: Mapping & Counting protocol results
      • CITE US
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